Query 026410
Match_columns 239
No_of_seqs 175 out of 1275
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 3.4E-62 7.3E-67 439.7 16.5 201 35-235 1-205 (363)
2 PLN02493 probable peroxisomal 100.0 2.1E-57 4.7E-62 422.6 18.1 174 34-207 2-175 (367)
3 PLN02535 glycolate oxidase 100.0 5.5E-57 1.2E-61 419.8 17.5 182 31-212 1-182 (364)
4 PRK11197 lldD L-lactate dehydr 100.0 1.5E-56 3.2E-61 419.0 17.1 174 34-207 2-175 (381)
5 cd04736 MDH_FMN Mandelate dehy 100.0 6.9E-56 1.5E-60 412.0 15.9 168 39-207 1-168 (361)
6 TIGR02708 L_lactate_ox L-lacta 100.0 1.6E-55 3.4E-60 410.3 17.3 174 34-207 12-186 (367)
7 cd03332 LMO_FMN L-Lactate 2-mo 100.0 4.6E-55 1E-59 409.3 17.0 172 35-207 18-190 (383)
8 cd04737 LOX_like_FMN L-Lactate 100.0 5.9E-54 1.3E-58 398.3 16.6 174 34-207 4-178 (351)
9 cd02922 FCB2_FMN Flavocytochro 100.0 1.9E-51 4.1E-56 380.8 16.9 169 39-207 1-171 (344)
10 PF01070 FMN_dh: FMN-dependent 100.0 2.4E-48 5.2E-53 361.6 13.0 169 45-213 1-172 (356)
11 PLN02979 glycolate oxidase 100.0 2E-42 4.4E-47 321.1 14.0 132 76-207 43-174 (366)
12 COG1304 idi Isopentenyl diphos 100.0 7.4E-36 1.6E-40 277.9 10.3 171 38-213 1-174 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 9.5E-33 2.1E-37 250.8 16.7 169 39-207 1-174 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 99.3 2.9E-12 6.4E-17 118.3 8.1 119 69-190 17-150 (326)
15 PRK05437 isopentenyl pyrophosp 99.2 1.3E-11 2.9E-16 115.2 7.8 120 71-190 27-158 (352)
16 TIGR02151 IPP_isom_2 isopenten 99.1 1E-10 2.2E-15 108.4 8.3 119 73-191 22-152 (333)
17 PRK05458 guanosine 5'-monophos 98.3 1.7E-06 3.6E-11 80.4 6.7 102 73-188 6-119 (326)
18 TIGR01306 GMP_reduct_2 guanosi 98.2 2.8E-06 6.1E-11 78.8 6.4 126 73-207 3-138 (321)
19 PRK08649 inosine 5-monophospha 97.1 0.0016 3.6E-08 61.5 8.1 117 73-196 17-173 (368)
20 cd00381 IMPDH IMPDH: The catal 97.0 0.0025 5.5E-08 59.1 8.0 106 73-188 3-114 (325)
21 TIGR01304 IMP_DH_rel_2 IMP deh 94.8 0.15 3.2E-06 48.5 8.6 62 72-139 13-75 (369)
22 PRK06843 inosine 5-monophospha 93.8 0.42 9E-06 46.0 9.4 69 73-149 11-81 (404)
23 PF00478 IMPDH: IMP dehydrogen 92.4 0.13 2.7E-06 48.7 3.5 121 73-205 4-148 (352)
24 TIGR01305 GMP_reduct_1 guanosi 91.5 0.83 1.8E-05 43.1 7.8 115 73-197 9-135 (343)
25 TIGR00737 nifR3_yhdG putative 90.8 2 4.3E-05 39.5 9.5 88 98-192 3-100 (319)
26 cd04739 DHOD_like Dihydroorota 89.6 2.8 6E-05 38.9 9.5 37 154-191 100-136 (325)
27 PLN02495 oxidoreductase, actin 89.2 3.4 7.3E-05 39.6 9.9 39 155-193 115-153 (385)
28 PRK05096 guanosine 5'-monophos 88.9 3.4 7.4E-05 39.0 9.5 69 73-149 10-85 (346)
29 PRK07259 dihydroorotate dehydr 88.7 4.6 0.0001 36.6 10.2 95 91-192 1-130 (301)
30 cd04738 DHOD_2_like Dihydrooro 88.7 7 0.00015 36.2 11.5 47 63-109 9-56 (327)
31 cd02940 DHPD_FMN Dihydropyrimi 87.6 5.8 0.00013 36.1 10.1 40 154-193 100-139 (299)
32 PRK05286 dihydroorotate dehydr 86.2 16 0.00034 34.1 12.3 99 87-193 44-182 (344)
33 cd04740 DHOD_1B_like Dihydroor 85.5 12 0.00025 33.8 10.8 42 154-196 90-131 (296)
34 cd02810 DHOD_DHPD_FMN Dihydroo 84.8 9.7 0.00021 34.0 9.9 41 154-195 99-139 (289)
35 TIGR01037 pyrD_sub1_fam dihydr 84.0 14 0.0003 33.4 10.7 95 92-193 1-131 (300)
36 PTZ00314 inosine-5'-monophosph 82.2 5.9 0.00013 39.0 8.0 108 73-189 19-135 (495)
37 cd04730 NPD_like 2-Nitropropan 81.2 6.7 0.00014 33.8 7.2 81 102-189 2-89 (236)
38 TIGR03151 enACPred_II putative 80.4 6.8 0.00015 36.1 7.3 85 94-189 5-96 (307)
39 PRK08318 dihydropyrimidine deh 79.1 22 0.00047 33.9 10.5 39 154-192 100-138 (420)
40 PRK07565 dihydroorotate dehydr 78.9 15 0.00033 33.9 9.2 36 154-190 102-137 (334)
41 PRK05567 inosine 5'-monophosph 76.5 7.1 0.00015 38.2 6.5 107 73-187 10-124 (486)
42 cd04722 TIM_phosphate_binding 76.2 19 0.00041 28.9 8.1 74 119-192 12-96 (200)
43 TIGR01303 IMP_DH_rel_1 IMP deh 76.2 11 0.00023 37.1 7.7 70 73-151 13-84 (475)
44 PRK02506 dihydroorotate dehydr 75.1 32 0.0007 31.6 10.1 96 91-193 1-132 (310)
45 PRK03170 dihydrodipicolinate s 72.6 30 0.00065 31.1 9.2 85 103-188 6-104 (292)
46 PRK03620 5-dehydro-4-deoxygluc 71.6 26 0.00056 32.0 8.6 85 103-189 12-110 (303)
47 PRK10415 tRNA-dihydrouridine s 71.4 24 0.00052 32.6 8.4 88 98-192 5-102 (321)
48 PRK10550 tRNA-dihydrouridine s 71.1 19 0.00042 33.2 7.7 83 103-192 1-100 (312)
49 cd00951 KDGDH 5-dehydro-4-deox 71.1 27 0.00059 31.5 8.6 84 103-188 5-102 (289)
50 PRK07807 inosine 5-monophospha 70.8 15 0.00033 36.1 7.2 105 73-187 14-126 (479)
51 TIGR03455 HisG_C-term ATP phos 70.1 23 0.00049 27.5 6.7 55 133-187 29-94 (100)
52 PF08029 HisG_C: HisG, C-termi 69.8 6.9 0.00015 28.9 3.6 49 139-187 11-70 (75)
53 TIGR01858 tag_bisphos_ald clas 68.7 12 0.00026 34.3 5.7 67 117-187 25-102 (282)
54 TIGR01302 IMP_dehydrog inosine 68.5 23 0.0005 34.3 7.9 109 73-189 3-119 (450)
55 PLN02274 inosine-5'-monophosph 68.4 21 0.00047 35.3 7.8 108 73-189 23-139 (505)
56 PRK09195 gatY tagatose-bisphos 67.9 12 0.00025 34.4 5.5 67 117-187 27-104 (284)
57 cd00947 TBP_aldolase_IIB Tagat 67.5 14 0.0003 33.8 5.9 68 117-188 22-100 (276)
58 PF01116 F_bP_aldolase: Fructo 67.2 6.6 0.00014 36.0 3.7 68 118-189 27-105 (287)
59 cd02808 GltS_FMN Glutamate syn 67.1 18 0.00039 34.5 6.7 48 100-149 75-122 (392)
60 TIGR00683 nanA N-acetylneurami 66.1 48 0.001 30.1 9.1 85 103-188 5-104 (290)
61 COG2185 Sbm Methylmalonyl-CoA 65.9 42 0.00091 27.9 7.8 90 98-192 10-103 (143)
62 PRK12738 kbaY tagatose-bisphos 65.8 15 0.00033 33.8 5.8 67 117-187 27-104 (286)
63 PRK12737 gatY tagatose-bisphos 64.1 18 0.00038 33.3 5.8 67 117-187 27-104 (284)
64 PRK12857 fructose-1,6-bisphosp 61.6 20 0.00044 32.9 5.7 73 117-195 27-110 (284)
65 PF01645 Glu_synthase: Conserv 61.0 6.7 0.00014 37.4 2.6 40 100-140 63-102 (368)
66 cd08205 RuBisCO_IV_RLP Ribulos 60.6 80 0.0017 29.9 9.8 96 96-193 124-236 (367)
67 TIGR00289 conserved hypothetic 59.8 61 0.0013 28.7 8.3 131 55-194 5-147 (222)
68 cd00950 DHDPS Dihydrodipicolin 58.3 84 0.0018 28.0 9.1 83 104-187 6-102 (284)
69 TIGR00290 MJ0570_dom MJ0570-re 58.3 58 0.0013 28.9 7.9 133 55-194 5-148 (223)
70 TIGR03679 arCOG00187 arCOG0018 58.1 46 0.001 29.0 7.2 67 123-194 78-149 (218)
71 PRK08227 autoinducer 2 aldolas 57.7 49 0.0011 30.1 7.5 61 123-187 162-226 (264)
72 TIGR00167 cbbA ketose-bisphosp 57.6 32 0.0007 31.6 6.4 68 117-188 27-108 (288)
73 PRK08185 hypothetical protein; 56.8 30 0.00065 31.8 6.0 66 118-187 23-98 (283)
74 PRK05835 fructose-bisphosphate 56.3 29 0.00064 32.3 5.9 68 117-188 26-105 (307)
75 PF00701 DHDPS: Dihydrodipicol 56.3 1.1E+02 0.0023 27.5 9.5 84 104-188 7-104 (289)
76 cd00408 DHDPS-like Dihydrodipi 55.3 1.2E+02 0.0025 26.9 9.5 84 104-188 3-100 (281)
77 PLN02826 dihydroorotate dehydr 55.2 22 0.00048 34.3 5.1 46 62-109 46-91 (409)
78 PRK11815 tRNA-dihydrouridine s 55.1 88 0.0019 29.0 9.0 92 98-196 6-106 (333)
79 COG2070 Dioxygenases related t 55.1 1.2E+02 0.0025 28.5 9.8 115 51-187 37-154 (336)
80 TIGR02313 HpaI-NOT-DapA 2,4-di 55.0 1.1E+02 0.0024 27.8 9.4 85 103-188 5-103 (294)
81 smart00481 POLIIIAc DNA polyme 54.7 17 0.00036 25.2 3.2 26 169-194 17-42 (67)
82 TIGR03884 sel_bind_Methan sele 54.6 17 0.00036 27.1 3.2 27 165-191 26-54 (74)
83 PRK07998 gatY putative fructos 54.1 32 0.00069 31.6 5.7 70 118-193 28-108 (283)
84 PRK06801 hypothetical protein; 54.1 34 0.00073 31.4 5.9 74 117-196 27-111 (286)
85 PRK11081 tRNA guanosine-2'-O-m 54.1 57 0.0012 29.0 7.2 74 113-189 25-99 (229)
86 TIGR03249 KdgD 5-dehydro-4-deo 53.8 90 0.002 28.2 8.6 97 103-202 10-120 (296)
87 cd08210 RLP_RrRLP Ribulose bis 53.7 1.2E+02 0.0026 28.8 9.7 117 74-192 94-230 (364)
88 cd01994 Alpha_ANH_like_IV This 53.2 37 0.00079 29.1 5.7 91 96-194 52-151 (194)
89 PRK06806 fructose-bisphosphate 50.5 42 0.00092 30.6 5.9 60 123-182 65-130 (281)
90 PF03060 NMO: Nitronate monoox 50.4 1.5E+02 0.0032 27.4 9.6 44 95-147 6-49 (330)
91 TIGR01521 FruBisAldo_II_B fruc 49.5 43 0.00093 31.8 5.9 68 117-188 25-104 (347)
92 cd07015 Clp_protease_NfeD Nodu 48.8 25 0.00053 29.9 3.9 32 166-197 15-46 (172)
93 PRK08673 3-deoxy-7-phosphohept 48.7 53 0.0011 30.9 6.4 34 118-151 143-176 (335)
94 PLN02417 dihydrodipicolinate s 48.6 1.3E+02 0.0027 27.1 8.7 84 104-188 7-104 (280)
95 cd02810 DHOD_DHPD_FMN Dihydroo 48.4 1.7E+02 0.0037 26.0 9.4 82 102-187 98-196 (289)
96 cd07021 Clp_protease_NfeD_like 47.9 27 0.00058 29.7 4.0 32 166-197 15-46 (178)
97 PRK01130 N-acetylmannosamine-6 46.6 73 0.0016 27.3 6.6 68 120-192 24-98 (221)
98 PRK13399 fructose-1,6-bisphosp 46.4 52 0.0011 31.2 5.9 70 117-189 27-107 (347)
99 TIGR00674 dapA dihydrodipicoli 45.5 1.6E+02 0.0034 26.4 8.8 85 103-188 3-101 (285)
100 cd07944 DRE_TIM_HOA_like 4-hyd 45.1 52 0.0011 29.6 5.6 33 164-197 135-167 (266)
101 cd00954 NAL N-Acetylneuraminic 44.7 2.2E+02 0.0047 25.6 9.6 83 104-188 6-104 (288)
102 PRK07709 fructose-bisphosphate 44.6 68 0.0015 29.5 6.3 68 117-188 27-108 (285)
103 KOG1436 Dihydroorotate dehydro 44.4 7.6 0.00017 36.7 0.1 45 63-109 57-101 (398)
104 PRK08610 fructose-bisphosphate 44.4 61 0.0013 29.8 6.0 67 117-187 27-107 (286)
105 PF05226 CHASE2: CHASE2 domain 44.3 28 0.00061 31.3 3.8 33 162-194 59-91 (310)
106 PRK07119 2-ketoisovalerate fer 43.9 80 0.0017 29.7 6.8 66 118-187 7-78 (352)
107 cd08585 GDPD_like_3 Glyceropho 43.7 74 0.0016 27.9 6.2 28 168-195 196-224 (237)
108 cd00945 Aldolase_Class_I Class 43.6 1.5E+02 0.0032 24.0 7.8 72 117-190 11-88 (201)
109 PRK09196 fructose-1,6-bisphosp 43.2 61 0.0013 30.8 5.9 69 117-188 27-106 (347)
110 PRK13398 3-deoxy-7-phosphohept 42.9 85 0.0018 28.4 6.6 34 118-151 77-110 (266)
111 PRK00489 hisG ATP phosphoribos 42.9 82 0.0018 28.4 6.6 49 139-187 221-280 (287)
112 cd04741 DHOD_1A_like Dihydroor 42.1 1.8E+02 0.0038 26.5 8.6 90 94-192 1-131 (294)
113 PRK12595 bifunctional 3-deoxy- 42.1 66 0.0014 30.5 6.0 69 119-187 169-259 (360)
114 PRK12855 hypothetical protein; 41.8 31 0.00068 27.1 3.2 27 166-192 59-86 (103)
115 PLN02775 Probable dihydrodipic 41.8 1.3E+02 0.0027 27.9 7.6 74 65-141 25-113 (286)
116 cd07896 Adenylation_kDNA_ligas 41.1 1.1E+02 0.0023 25.2 6.5 41 157-197 125-166 (174)
117 PRK13397 3-deoxy-7-phosphohept 40.9 85 0.0018 28.4 6.2 76 109-188 57-157 (250)
118 PF01906 YbjQ_1: Putative heav 40.8 33 0.00072 26.5 3.2 25 166-190 59-84 (105)
119 PF01068 DNA_ligase_A_M: ATP d 40.4 88 0.0019 26.0 6.0 43 154-196 150-194 (202)
120 PRK02877 hypothetical protein; 39.3 36 0.00078 26.8 3.2 29 166-194 59-88 (106)
121 TIGR00742 yjbN tRNA dihydrouri 38.6 2.1E+02 0.0047 26.4 8.7 83 104-193 2-93 (318)
122 PRK04147 N-acetylneuraminate l 38.6 2.9E+02 0.0063 24.8 9.5 85 103-188 8-107 (293)
123 PRK07084 fructose-bisphosphate 38.6 71 0.0015 30.0 5.5 68 117-188 33-116 (321)
124 PF01902 ATP_bind_4: ATP-bindi 38.3 56 0.0012 28.8 4.6 84 100-194 56-148 (218)
125 PRK11858 aksA trans-homoaconit 37.8 2.3E+02 0.005 26.7 9.0 28 167-195 145-172 (378)
126 TIGR03151 enACPred_II putative 37.7 1.1E+02 0.0023 28.2 6.5 58 122-188 77-137 (307)
127 TIGR01361 DAHP_synth_Bsub phos 36.5 1.2E+02 0.0026 27.3 6.5 70 118-187 75-166 (260)
128 COG0329 DapA Dihydrodipicolina 36.2 2.1E+02 0.0046 26.1 8.2 87 102-189 8-108 (299)
129 PRK12856 hypothetical protein; 36.1 44 0.00095 26.3 3.2 28 166-193 59-87 (103)
130 PRK01119 hypothetical protein; 36.1 44 0.00095 26.3 3.2 29 166-194 59-88 (106)
131 cd06557 KPHMT-like Ketopantoat 36.0 1.2E+02 0.0026 27.4 6.4 41 164-207 152-195 (254)
132 COG1606 ATP-utilizing enzymes 35.2 39 0.00085 30.9 3.1 28 173-200 34-62 (269)
133 cd04795 SIS SIS domain. SIS (S 33.9 1.6E+02 0.0035 20.4 6.9 35 153-187 47-81 (87)
134 PRK13396 3-deoxy-7-phosphohept 33.4 73 0.0016 30.3 4.8 41 110-151 144-184 (352)
135 TIGR01859 fruc_bis_ald_ fructo 33.2 1.1E+02 0.0024 27.9 5.8 55 127-181 68-129 (282)
136 COG1180 PflA Pyruvate-formate 33.1 3.6E+02 0.0078 24.1 9.3 91 110-201 90-193 (260)
137 cd07901 Adenylation_DNA_ligase 33.1 1.3E+02 0.0027 25.7 5.9 38 162-199 161-200 (207)
138 cd08600 GDPD_EcGlpQ_like Glyce 32.9 2E+02 0.0043 26.5 7.5 24 170-193 266-289 (318)
139 COG0393 Uncharacterized conser 32.6 52 0.0011 26.2 3.1 28 167-194 60-88 (108)
140 PRK08366 vorA 2-ketoisovalerat 32.3 1.7E+02 0.0036 28.1 7.1 66 119-187 7-79 (390)
141 PRK00967 hypothetical protein; 32.1 55 0.0012 25.6 3.2 29 166-194 59-88 (105)
142 TIGR01036 pyrD_sub2 dihydrooro 32.1 56 0.0012 30.5 3.8 44 86-137 41-84 (335)
143 TIGR00035 asp_race aspartate r 31.8 51 0.0011 28.6 3.3 68 131-207 33-100 (229)
144 PF06506 PrpR_N: Propionate ca 31.7 1.8E+02 0.0039 24.1 6.5 81 100-187 51-132 (176)
145 PRK01217 hypothetical protein; 31.6 57 0.0012 26.0 3.2 29 166-194 66-95 (114)
146 PRK07315 fructose-bisphosphate 31.5 1.7E+02 0.0037 26.8 6.8 19 121-139 31-49 (293)
147 PF05036 SPOR: Sporulation rel 31.4 79 0.0017 21.6 3.7 31 155-185 4-34 (76)
148 COG2102 Predicted ATPases of P 31.0 1.2E+02 0.0025 27.2 5.3 94 94-195 51-150 (223)
149 cd04739 DHOD_like Dihydroorota 31.0 3.6E+02 0.0078 24.8 8.9 82 102-189 99-197 (325)
150 PF01180 DHO_dh: Dihydroorotat 30.8 36 0.00078 30.7 2.2 18 92-109 2-19 (295)
151 cd08573 GDPD_GDE1 Glycerophosp 30.6 1.4E+02 0.003 26.5 5.9 26 168-193 216-241 (258)
152 COG1030 NfeD Membrane-bound se 30.2 65 0.0014 31.6 3.9 28 166-193 42-69 (436)
153 cd08612 GDPD_GDE4 Glycerophosp 30.2 1.1E+02 0.0023 27.8 5.2 25 168-192 249-273 (300)
154 COG0107 HisF Imidazoleglycerol 30.2 50 0.0011 30.0 2.9 61 123-188 112-176 (256)
155 PRK09627 oorA 2-oxoglutarate-a 30.1 1.7E+02 0.0037 27.8 6.7 65 119-187 7-77 (375)
156 PLN02858 fructose-bisphosphate 29.7 1.1E+02 0.0025 34.1 6.1 62 122-187 1128-1199(1378)
157 cd05013 SIS_RpiR RpiR-like pro 29.6 2.4E+02 0.0053 21.1 6.8 38 153-190 60-97 (139)
158 PRK06806 fructose-bisphosphate 29.5 2.4E+02 0.0051 25.8 7.3 29 120-148 85-113 (281)
159 KOG2550 IMP dehydrogenase/GMP 29.3 86 0.0019 30.8 4.5 113 72-193 30-151 (503)
160 cd02801 DUS_like_FMN Dihydrour 29.2 3.5E+02 0.0076 22.8 8.5 39 154-193 55-93 (231)
161 COG0107 HisF Imidazoleglycerol 29.1 1.7E+02 0.0036 26.7 6.0 66 123-192 65-133 (256)
162 PRK09622 porA pyruvate flavodo 29.1 1.9E+02 0.0042 27.6 7.0 66 118-187 13-86 (407)
163 COG3147 DedD Uncharacterized p 28.9 48 0.001 29.6 2.6 43 154-197 150-192 (226)
164 cd07020 Clp_protease_NfeD_1 No 28.7 88 0.0019 26.3 4.1 30 165-194 14-43 (187)
165 PRK10200 putative racemase; Pr 28.6 49 0.0011 29.0 2.6 39 167-207 62-100 (230)
166 PF02593 dTMP_synthase: Thymid 28.4 73 0.0016 28.3 3.6 34 164-197 60-93 (217)
167 TIGR01362 KDO8P_synth 3-deoxy- 28.4 62 0.0014 29.5 3.3 103 6-133 102-215 (258)
168 PF07338 DUF1471: Protein of u 28.2 1E+02 0.0022 21.2 3.7 22 166-187 18-39 (56)
169 TIGR01361 DAHP_synth_Bsub phos 28.1 1.5E+02 0.0033 26.6 5.8 30 122-151 122-151 (260)
170 cd08568 GDPD_TmGDE_like Glycer 27.6 1.8E+02 0.0039 24.9 6.0 22 170-191 184-205 (226)
171 PF02811 PHP: PHP domain; Int 27.3 61 0.0013 25.7 2.8 27 168-194 17-43 (175)
172 cd08559 GDPD_periplasmic_GlpQ_ 27.2 1.9E+02 0.0041 26.1 6.3 21 170-190 246-266 (296)
173 PRK05198 2-dehydro-3-deoxyphos 27.0 66 0.0014 29.4 3.2 103 6-133 110-223 (264)
174 COG1830 FbaB DhnA-type fructos 27.0 2.4E+02 0.0051 25.9 6.7 86 98-187 139-237 (265)
175 PRK06361 hypothetical protein; 26.9 67 0.0015 27.2 3.1 25 168-192 11-35 (212)
176 cd08601 GDPD_SaGlpQ_like Glyce 26.4 2.3E+02 0.005 24.7 6.5 23 169-191 207-229 (256)
177 PRK03732 hypothetical protein; 26.4 80 0.0017 25.2 3.2 26 166-191 66-92 (114)
178 PRK11633 cell division protein 26.3 1.5E+02 0.0032 26.4 5.3 38 154-191 148-185 (226)
179 cd04742 NPD_FabD 2-Nitropropan 26.2 3.8E+02 0.0083 26.1 8.4 84 95-186 8-101 (418)
180 cd04728 ThiG Thiazole synthase 26.0 64 0.0014 29.3 2.9 54 154-207 90-150 (248)
181 TIGR02090 LEU1_arch isopropylm 26.0 4E+02 0.0086 25.0 8.4 30 164-194 138-167 (363)
182 PRK13397 3-deoxy-7-phosphohept 25.9 1.4E+02 0.0029 27.1 5.0 97 15-134 112-214 (250)
183 PRK08659 2-oxoglutarate ferred 25.5 1.9E+02 0.004 27.5 6.1 65 118-186 7-77 (376)
184 TIGR00284 dihydropteroate synt 24.5 2.5E+02 0.0053 28.0 6.9 124 37-194 163-290 (499)
185 cd07372 2A5CPDO_B The beta sub 23.7 1.9E+02 0.0041 26.5 5.6 69 120-188 38-120 (294)
186 PF09413 DUF2007: Domain of un 23.5 94 0.002 21.4 2.8 54 120-176 10-65 (67)
187 cd04729 NanE N-acetylmannosami 23.2 2.9E+02 0.0063 23.5 6.4 65 122-187 30-99 (219)
188 cd00308 enolase_like Enolase-s 23.1 3.3E+02 0.0072 23.2 6.8 63 122-185 135-201 (229)
189 KOG2794 Delta-aminolevulinic a 22.9 1.2E+02 0.0026 28.2 4.1 49 144-193 216-267 (340)
190 cd04743 NPD_PKS 2-Nitropropane 22.9 3.2E+02 0.0068 25.7 6.9 71 109-186 57-129 (320)
191 PRK11840 bifunctional sulfur c 22.8 71 0.0015 30.1 2.6 50 153-202 163-219 (326)
192 COG1737 RpiR Transcriptional r 22.6 2.9E+02 0.0064 24.7 6.6 76 124-199 148-223 (281)
193 PRK08367 porA pyruvate ferredo 22.6 3.6E+02 0.0077 25.8 7.4 66 119-187 8-80 (394)
194 cd03317 NAAAR N-acylamino acid 22.4 4.1E+02 0.0089 24.3 7.7 62 122-184 218-283 (354)
195 PLN02424 ketopantoate hydroxym 22.0 1.5E+02 0.0033 28.0 4.6 41 164-207 176-219 (332)
196 TIGR02660 nifV_homocitr homoci 21.9 6.5E+02 0.014 23.5 9.0 24 36-60 20-43 (365)
197 COG4252 Predicted transmembran 21.8 1.1E+02 0.0023 29.7 3.7 32 162-193 78-109 (400)
198 PLN02617 imidazole glycerol ph 21.5 1E+02 0.0023 30.8 3.7 32 156-187 423-458 (538)
199 PLN02245 ATP phosphoribosyl tr 21.4 4.6E+02 0.0099 25.5 7.8 59 129-187 299-381 (403)
200 TIGR00067 glut_race glutamate 21.3 91 0.002 27.8 3.0 37 170-207 50-87 (251)
201 PF03102 NeuB: NeuB family; I 21.2 1E+02 0.0023 27.5 3.3 55 121-176 102-167 (241)
202 KOG1541 Predicted protein carb 21.2 1E+02 0.0022 28.1 3.1 38 154-193 154-191 (270)
203 COG1591 Holliday junction reso 21.0 3.1E+02 0.0067 22.7 5.7 75 119-196 8-94 (137)
204 cd03174 DRE_TIM_metallolyase D 20.8 5.4E+02 0.012 22.1 7.7 27 36-63 16-42 (265)
205 cd00953 KDG_aldolase KDG (2-ke 20.8 6.1E+02 0.013 22.7 8.9 80 106-188 8-99 (279)
206 PRK05286 dihydroorotate dehydr 20.8 2.1E+02 0.0045 26.6 5.4 36 155-190 213-248 (344)
207 PRK00311 panB 3-methyl-2-oxobu 20.7 2.9E+02 0.0063 25.1 6.1 41 164-207 155-198 (264)
208 COG0167 PyrD Dihydroorotate de 20.7 99 0.0022 28.9 3.1 42 91-136 1-42 (310)
209 TIGR01501 MthylAspMutase methy 20.6 4.3E+02 0.0094 21.5 6.6 65 117-183 14-83 (134)
210 cd02072 Glm_B12_BD B12 binding 20.6 4.5E+02 0.0098 21.2 6.6 25 123-147 41-66 (128)
211 cd00952 CHBPH_aldolase Trans-o 20.3 6.6E+02 0.014 22.9 9.4 72 116-188 26-111 (309)
212 cd04738 DHOD_2_like Dihydrooro 20.2 2.2E+02 0.0048 26.2 5.4 34 155-188 204-237 (327)
213 TIGR01588 citE citrate lyase, 20.1 1.4E+02 0.0031 27.1 4.0 37 160-199 7-43 (288)
214 COG2121 Uncharacterized protei 20.1 4.4E+02 0.0095 23.5 6.8 85 117-207 77-171 (214)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=3.4e-62 Score=439.73 Aligned_cols=201 Identities=58% Similarity=0.893 Sum_probs=192.4
Q ss_pred CCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchh
Q 026410 35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK 114 (239)
Q Consensus 35 ~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~ 114 (239)
++|+.|||+.|+++|||.+||||.|||+|++|+++|++||+||+|+||+|+||+.+|+||++||+++++||+|||||+|+
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcC-CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 115 l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
|+|||||.++||||.++|++|++||++++|+|||++++| +++|||||+++||+++++|++|||++|||||+||||+|++
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999985 8999999999999999999999999999999999999999
Q ss_pred CCchhHhhcCCCCC---CCCCcccccccccCCCCCCchhhhhccc
Q 026410 194 GRREADIKNKMITP---PLKNLEGLLSTKVSSDTGSNFEADAKRP 235 (239)
Q Consensus 194 g~Re~d~r~~f~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (239)
|+|+.|+||+|.+| +++||++.....++..+++|++.|++..
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~ 205 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQ 205 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcC
Confidence 99999999999999 6899998877666666888999887643
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=2.1e-57 Score=422.64 Aligned_cols=174 Identities=59% Similarity=0.963 Sum_probs=170.9
Q ss_pred CCCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccch
Q 026410 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (239)
Q Consensus 34 ~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~ 113 (239)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+||+++||+|++||+++++||+|||+|++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 114 ~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
+++||+||+++||||+++|++|++||.+++|+|||+++.+++.|||||+++|+++++++|+|||++||+|||||||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987677899999999999999999999999999999999999999
Q ss_pred CCchhHhhcCCCCC
Q 026410 194 GRREADIKNKMITP 207 (239)
Q Consensus 194 g~Re~d~r~~f~~p 207 (239)
|+||+|+||+|.+|
T Consensus 162 G~R~~d~r~~~~~p 175 (367)
T PLN02493 162 GRRESDIKNRFTLP 175 (367)
T ss_pred CcchhhhcccCCCC
Confidence 99999999999998
No 3
>PLN02535 glycolate oxidase
Probab=100.00 E-value=5.5e-57 Score=419.84 Aligned_cols=182 Identities=81% Similarity=1.216 Sum_probs=174.9
Q ss_pred CCCCCCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccc
Q 026410 31 MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPT 110 (239)
Q Consensus 31 ~~~~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~ 110 (239)
|.++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+||+++||+|++||+++++||+|||+
T Consensus 1 ~~~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~ 80 (364)
T PLN02535 1 MADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPT 80 (364)
T ss_pred CCcccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecC
Q 026410 111 ALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT 190 (239)
Q Consensus 111 g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~ 190 (239)
|+++++||+||+++||||+++|++|++|+.+++|+|||+++.+++.|||||+++|+++++++|+|||++||+|||||||+
T Consensus 81 g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~ 160 (364)
T PLN02535 81 AMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADV 160 (364)
T ss_pred HHhcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecC
Confidence 99999999999999999999999999999999999999987678899999999999999999999999999999999999
Q ss_pred CCCCCchhHhhcCCCCCCCCCc
Q 026410 191 PRLGRREADIKNKMITPPLKNL 212 (239)
Q Consensus 191 p~~g~Re~d~r~~f~~p~~~~~ 212 (239)
|+.|+||+|+||+|.+|.++++
T Consensus 161 p~~g~R~~d~r~~~~~p~~~~~ 182 (364)
T PLN02535 161 PRLGRREADIKNKMISPQLKNF 182 (364)
T ss_pred CCCCCchhhhhcCCCCcchhhH
Confidence 9999999999999998843343
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-56 Score=418.97 Aligned_cols=174 Identities=34% Similarity=0.522 Sum_probs=170.8
Q ss_pred CCCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccch
Q 026410 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (239)
Q Consensus 34 ~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~ 113 (239)
.++|++|||+.||++||+.+|+|+.||++||.|+++|+++|++|+|+||+|+||+++||+|++||+++++||+|||+|++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 114 ~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
+++||+||+++||||+++|++|++|+.+++|+|||+++.++..|||||+++|+++++++|+|||++||+|||||||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987777899999999999999999999999999999999999999
Q ss_pred CCchhHhhcCCCCC
Q 026410 194 GRREADIKNKMITP 207 (239)
Q Consensus 194 g~Re~d~r~~f~~p 207 (239)
|+||+|+||+|++|
T Consensus 162 G~Rerd~rn~~~~p 175 (381)
T PRK11197 162 GARYRDAHSGMSGP 175 (381)
T ss_pred CCChhhhhcCCCCC
Confidence 99999999999988
No 5
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=6.9e-56 Score=411.96 Aligned_cols=168 Identities=44% Similarity=0.689 Sum_probs=164.7
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchhccCc
Q 026410 39 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANP 118 (239)
Q Consensus 39 ~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp 118 (239)
+|||+.||++||+.+|+|++||++||.|+++|++||++|+|+||+|+||+++||+|++||+++++||+|||+|+++++||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchh
Q 026410 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREA 198 (239)
Q Consensus 119 ~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re~ 198 (239)
+||+++||||+++|++|++||+|++|+|||+++.+++.|||||++ |+++++++|+|||++||+|||||||+|+.|+||+
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988777899999997 5999999999999999999999999999999999
Q ss_pred HhhcCCCCC
Q 026410 199 DIKNKMITP 207 (239)
Q Consensus 199 d~r~~f~~p 207 (239)
|.||+|.+|
T Consensus 160 d~r~~~~~p 168 (361)
T cd04736 160 DLRNGFAIP 168 (361)
T ss_pred hhhcCCCCC
Confidence 999999988
No 6
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=1.6e-55 Score=410.34 Aligned_cols=174 Identities=35% Similarity=0.573 Sum_probs=170.5
Q ss_pred CCCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccch
Q 026410 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (239)
Q Consensus 34 ~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~ 113 (239)
+++|++|||+.||++||+.+|+|++||++||+|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|++
T Consensus 12 ~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~ 91 (367)
T TIGR02708 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAH 91 (367)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhc-CCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 026410 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (239)
Q Consensus 114 ~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~-~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (239)
+++||+||.++||||+++|++|++|+.+++|+|||+++. +++.|||||+++|+++++++|+|||++||+||+||||+|+
T Consensus 92 ~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~ 171 (367)
T TIGR02708 92 KLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATV 171 (367)
T ss_pred hccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999874 5789999999999999999999999999999999999999
Q ss_pred CCCchhHhhcCCCCC
Q 026410 193 LGRREADIKNKMITP 207 (239)
Q Consensus 193 ~g~Re~d~r~~f~~p 207 (239)
.|+||+|+||+|.+|
T Consensus 172 ~g~R~~d~r~~~~~p 186 (367)
T TIGR02708 172 GGNREVDVRNGFVFP 186 (367)
T ss_pred CCcchhhhhcCCCCC
Confidence 999999999999988
No 7
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=4.6e-55 Score=409.27 Aligned_cols=172 Identities=41% Similarity=0.626 Sum_probs=168.2
Q ss_pred CCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchh
Q 026410 35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK 114 (239)
Q Consensus 35 ~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~ 114 (239)
++|++|||+.||++||+.+|+|+.||++||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|+++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhc-CCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 115 l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~-~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
++||+||+++||||+++|++|++|+.+++|+|||+++. +++.|||||+++||++++++|+|||++||+|||||||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 99999999999999999999999999999999999875 47899999999999999999999999999999999999999
Q ss_pred CCchhHhhcCCCCC
Q 026410 194 GRREADIKNKMITP 207 (239)
Q Consensus 194 g~Re~d~r~~f~~p 207 (239)
|+||+|+||+| .|
T Consensus 178 g~Rerd~r~~~-~p 190 (383)
T cd03332 178 GWRPRDLDLGY-LP 190 (383)
T ss_pred CCchhhhhcCC-CC
Confidence 99999999999 45
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=5.9e-54 Score=398.27 Aligned_cols=174 Identities=41% Similarity=0.638 Sum_probs=170.7
Q ss_pred CCCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccch
Q 026410 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (239)
Q Consensus 34 ~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~ 113 (239)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+||+++||+|++||+++++||+|||||++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhc-CCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 026410 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (239)
Q Consensus 114 ~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~-~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (239)
+++||+||+++||||+++|++|++|+.+++|+|||+++. +++.|||||+++|+++++++|+||+++||++|+||||+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999887 5789999999999999999999999999999999999999
Q ss_pred CCCchhHhhcCCCCC
Q 026410 193 LGRREADIKNKMITP 207 (239)
Q Consensus 193 ~g~Re~d~r~~f~~p 207 (239)
.|+|++|+||+|.+|
T Consensus 164 ~g~R~~d~r~~~~~p 178 (351)
T cd04737 164 GGNREADIRNKFQFP 178 (351)
T ss_pred CCcchHHHHhcCCCC
Confidence 999999999999988
No 9
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=1.9e-51 Score=380.79 Aligned_cols=169 Identities=46% Similarity=0.700 Sum_probs=165.1
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchhccCc
Q 026410 39 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANP 118 (239)
Q Consensus 39 ~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp 118 (239)
+|||+.||++||+.+|+|++||++||+|+++|++||++|+|+||+|+|++++||+|+|||+++++||+|||||+++++||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhc-C-CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCc
Q 026410 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-N-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRR 196 (239)
Q Consensus 119 ~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~-~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~R 196 (239)
+||+++||||+++|++|++||++++|+|||+++. | ++.|||||+++|++.++++++|||++||+||+||||+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 9999999999999999999999999999998774 4 6899999999999999999999999999999999999999999
Q ss_pred hhHhhcCCCCC
Q 026410 197 EADIKNKMITP 207 (239)
Q Consensus 197 e~d~r~~f~~p 207 (239)
++|+||+|..|
T Consensus 161 ~~d~r~~~~~p 171 (344)
T cd02922 161 ERDERLKAEEA 171 (344)
T ss_pred hhhhhhcCCcC
Confidence 99999999988
No 10
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=2.4e-48 Score=361.56 Aligned_cols=169 Identities=47% Similarity=0.679 Sum_probs=159.0
Q ss_pred HHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchhccCcHHHHHH
Q 026410 45 ARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVAT 124 (239)
Q Consensus 45 Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~al 124 (239)
||++||+.+|+||+||+++|.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||||++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhHhhcCC
Q 026410 125 ARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204 (239)
Q Consensus 125 ArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re~d~r~~f 204 (239)
||||+++|++|++|++++.++|||+++.+++.|||||+++|++.+.++|+|||++||+||+||||+|+.|+|++|.|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998878899999999999999999999999999999999999999999999999999
Q ss_pred CCC---CCCCcc
Q 026410 205 ITP---PLKNLE 213 (239)
Q Consensus 205 ~~p---~~~~~~ 213 (239)
++| +++++.
T Consensus 161 ~~p~~~~~~~~~ 172 (356)
T PF01070_consen 161 SVPPKLSPRNLL 172 (356)
T ss_dssp CCSTTHCTTCGT
T ss_pred CCCccccccccc
Confidence 998 455553
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=2e-42 Score=321.08 Aligned_cols=132 Identities=60% Similarity=0.962 Sum_probs=129.2
Q ss_pred ccccccccccCCCCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcCCc
Q 026410 76 RITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAV 155 (239)
Q Consensus 76 ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~~~ 155 (239)
-|+|+||+|+||+++||+|++||+++++||+|||+|+++++||+||.++||||+++|++|++|+++++|+|||+++.+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999876788
Q ss_pred eeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhHhhcCCCCC
Q 026410 156 RFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP 207 (239)
Q Consensus 156 ~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re~d~r~~f~~p 207 (239)
.|||||+++|+++++++|+||+++||+||+||||+|+.|+||+|+||+|.+|
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p 174 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLP 174 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999998
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.4e-36 Score=277.92 Aligned_cols=171 Identities=47% Similarity=0.656 Sum_probs=162.8
Q ss_pred HHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchhccC
Q 026410 38 LNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLAN 117 (239)
Q Consensus 38 l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~h 117 (239)
+.|+++.|++++| ..|+|+.+|+++|+|+++|.++|++|.|+||+|++++++|++|++||+++++||+|+||++++|.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3589999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 026410 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRRE 197 (239)
Q Consensus 118 p~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re 197 (239)
++||...+++|+++|+++++|+.+|+++|++.+..+ ||+|+.+||+...++++||+++||+++++|||.|+.|+|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999977655 8999999999999999999999999999999999999999
Q ss_pred hHhhcCCCCC---CCCCcc
Q 026410 198 ADIKNKMITP---PLKNLE 213 (239)
Q Consensus 198 ~d~r~~f~~p---~~~~~~ 213 (239)
+|.++++..| ...|+.
T Consensus 156 ~d~~~~i~a~~~~~h~n~~ 174 (360)
T COG1304 156 RDAVNGISAPALAIHLNVL 174 (360)
T ss_pred HHHHhccCCCcccccccHH
Confidence 9999999888 345553
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=9.5e-33 Score=250.79 Aligned_cols=169 Identities=51% Similarity=0.754 Sum_probs=157.1
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchhccCc
Q 026410 39 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANP 118 (239)
Q Consensus 39 ~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp 118 (239)
.|||..|+++||+..|+|+.+|++++.|+++|+.+|++|+|+||+|++++++||+|+|||++++.||+|+||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCch-
Q 026410 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRRE- 197 (239)
Q Consensus 119 ~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re- 197 (239)
+++.++|++|+++|+++++|++++.++|++.+..+++.|+|||...|++.+.++++++++.|+++|.+++|+|..|.|.
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~ 160 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLT 160 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCC
Confidence 9999999999999999999999999999999877788999999988999999999999999999999999999977552
Q ss_pred ----hHhhcCCCCC
Q 026410 198 ----ADIKNKMITP 207 (239)
Q Consensus 198 ----~d~r~~f~~p 207 (239)
+.+|.....|
T Consensus 161 ~~~i~~l~~~~~~p 174 (299)
T cd02809 161 WDDLAWLRSQWKGP 174 (299)
T ss_pred HHHHHHHHHhcCCC
Confidence 3344444455
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.33 E-value=2.9e-12 Score=118.27 Aligned_cols=119 Identities=20% Similarity=0.149 Sum_probs=84.5
Q ss_pred HHHHHhccccccccccc--CCCCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCC----
Q 026410 69 ENVEAFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS---- 142 (239)
Q Consensus 69 ~N~~af~ri~l~PRvL~--dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss---- 142 (239)
.+...|++|+|+|+.|+ +++++||+|+|||+++++||+++||+|....-.+...++|++|.++|++|++||++.
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35677999999999999 889999999999999999999999865422123346899999999999999999853
Q ss_pred ----CcHHHHHhhcC-CceeEEEEe----ecCHHHHHHHHHHHHHcCCcEEEEeecC
Q 026410 143 ----SSIEEVAASCN-AVRFYQLYV----FKKRDIAATLVQRAERNGFKALVLTADT 190 (239)
Q Consensus 143 ----~sleeia~~~~-~~~wfQLy~----~~dr~~~~~li~rAe~aG~~AlvvTVD~ 190 (239)
.+++.+.+..+ .+.+-=+-. ..+.+ +..+..+.++++|+-|+++.
T Consensus 97 ~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~---~~~~~i~~~~adalel~l~~ 150 (326)
T cd02811 97 PELAESFTVVREAPPNGPLIANLGAVQLNGYGVE---EARRAVEMIEADALAIHLNP 150 (326)
T ss_pred hhhhhHHHHHHHhCCCceEEeecCccccCCCCHH---HHHHHHHhcCCCcEEEeCcc
Confidence 23344544444 221111111 11333 33333455689999999975
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.25 E-value=1.3e-11 Score=115.16 Aligned_cols=120 Identities=22% Similarity=0.185 Sum_probs=84.0
Q ss_pred HHHhccccccccccc--CCCCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCC------
Q 026410 71 VEAFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS------ 142 (239)
Q Consensus 71 ~~af~ri~l~PRvL~--dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss------ 142 (239)
...|++|+|.|+.|+ +++++||+|+|||+++++||+|+||++..-.-.+.+.++|++|.++|+++++||++.
T Consensus 27 ~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~ 106 (352)
T PRK05437 27 TTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE 106 (352)
T ss_pred CCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh
Confidence 445999999999999 788999999999999999999999865431123456899999999999999999862
Q ss_pred --CcHHHHHhhcC-CceeEEEEeecCHHH-HHHHHHHHHHcCCcEEEEeecC
Q 026410 143 --SSIEEVAASCN-AVRFYQLYVFKKRDI-AATLVQRAERNGFKALVLTADT 190 (239)
Q Consensus 143 --~sleeia~~~~-~~~wfQLy~~~dr~~-~~~li~rAe~aG~~AlvvTVD~ 190 (239)
.+++.+++..| .+.+.=|........ .++..+.++..++.|+-|++..
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~ 158 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNP 158 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcc
Confidence 23334444444 222221111111112 1334444566789999999865
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.15 E-value=1e-10 Score=108.39 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=80.6
Q ss_pred Hhccccccccccc--CCCCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCC--------
Q 026410 73 AFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS-------- 142 (239)
Q Consensus 73 af~ri~l~PRvL~--dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss-------- 142 (239)
.|++|+|.|..|+ +++++||||+|||++++.||+++||+|..-.-..-...+|++|+++|+++++||++.
T Consensus 22 ~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~ 101 (333)
T TIGR02151 22 GFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPETA 101 (333)
T ss_pred CcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhH
Confidence 3999999999999 578999999999999999999999865431112336799999999999999999762
Q ss_pred CcHHHHHhhcCC-ceeEEEEeecCHH-HHHHHHHHHHHcCCcEEEEeecCC
Q 026410 143 SSIEEVAASCNA-VRFYQLYVFKKRD-IAATLVQRAERNGFKALVLTADTP 191 (239)
Q Consensus 143 ~sleeia~~~~~-~~wfQLy~~~dr~-~~~~li~rAe~aG~~AlvvTVD~p 191 (239)
.+.+.+.+..++ +..--+-.....+ ...+..+.++..++.|+-++++.+
T Consensus 102 ~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~ 152 (333)
T TIGR02151 102 DTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVL 152 (333)
T ss_pred hHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccc
Confidence 122334443432 2221111111101 123344445567889999999743
No 17
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.27 E-value=1.7e-06 Score=80.43 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=72.8
Q ss_pred HhcccccccccccC--CCCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHh
Q 026410 73 AFHRITFRPRILVD--VSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (239)
Q Consensus 73 af~ri~l~PRvL~d--v~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~ 150 (239)
.|++++|+|..|+. ++++|++|+|+|.++++||+|++|- ...+..+|++|++.|...++-- .++|+..+
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHR---FDPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 39999999999995 5689999999999999999999982 2689999999999998888854 35666442
Q ss_pred h---c-CCceeEEEEeec----CHHHHHHHHHHHHHcCC--cEEEEee
Q 026410 151 S---C-NAVRFYQLYVFK----KRDIAATLVQRAERNGF--KALVLTA 188 (239)
Q Consensus 151 ~---~-~~~~wfQLy~~~----dr~~~~~li~rAe~aG~--~AlvvTV 188 (239)
- . +. ||+..- ..+. .+.++...++|+ ++|+|++
T Consensus 77 ~~r~~~~~----~l~v~~~vg~~~~~-~~~~~~Lv~ag~~~d~i~iD~ 119 (326)
T PRK05458 77 FIKDMHEQ----GLIASISVGVKDDE-YDFVDQLAAEGLTPEYITIDI 119 (326)
T ss_pred HHHhcccc----ccEEEEEecCCHHH-HHHHHHHHhcCCCCCEEEEEC
Confidence 2 2 32 344422 2332 344555556765 7655543
No 18
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.20 E-value=2.8e-06 Score=78.81 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=82.7
Q ss_pred HhcccccccccccC--CCCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHh
Q 026410 73 AFHRITFRPRILVD--VSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (239)
Q Consensus 73 af~ri~l~PRvL~d--v~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~ 150 (239)
.|++++|+|+.|+. ++++|++|+|+|.++++||+|++|- ...+..+|++|++.|...++-- .++|+..+
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK---~~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHR---FDEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 49999999999995 4689999999999999999999982 3789999999999999999865 25666432
Q ss_pred hcCCceeEEEEeecC---HHHHHHHHHHHHHcCCcEEEEeecCCCCCC-----chhHhhcCCCCC
Q 026410 151 SCNAVRFYQLYVFKK---RDIAATLVQRAERNGFKALVLTADTPRLGR-----READIKNKMITP 207 (239)
Q Consensus 151 ~~~~~~wfQLy~~~d---r~~~~~li~rAe~aG~~AlvvTVD~p~~g~-----Re~d~r~~f~~p 207 (239)
..+...=-|++..-. .+...+.+....++|..+=+|.+|+...=. .-+.+|..+..|
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~ 138 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDS 138 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCC
Confidence 221000003333221 122234455556778545556666643222 235566666444
No 19
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.14 E-value=0.0016 Score=61.53 Aligned_cols=117 Identities=16% Similarity=0.151 Sum_probs=77.5
Q ss_pred HhcccccccccccC--CCCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCC----CCCcHH
Q 026410 73 AFHRITFRPRILVD--VSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFT----SSSSIE 146 (239)
Q Consensus 73 af~ri~l~PRvL~d--v~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~----ss~sle 146 (239)
.|+++.|+|. ++. .+++|+++.+-+..+..||+++||.+. .+..++++..++|-.-++... ...+.|
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gV------t~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAV------VSPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCccc------CCHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 5999999999 674 467899998999999999999998543 355788888888886666621 112344
Q ss_pred HHHhhc----C------------Cce---------------eEEEEeecCHHHHHHHHHHHHHcCCcEEEEe---ecCCC
Q 026410 147 EVAASC----N------------AVR---------------FYQLYVFKKRDIAATLVQRAERNGFKALVLT---ADTPR 192 (239)
Q Consensus 147 eia~~~----~------------~~~---------------wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT---VD~p~ 192 (239)
++.+.. + .+. -.-+-+.-+.....++++.++++|+++|+++ +|...
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h 169 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEH 169 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhc
Confidence 433211 0 000 0111111133345688888999999999995 47666
Q ss_pred CCCc
Q 026410 193 LGRR 196 (239)
Q Consensus 193 ~g~R 196 (239)
.+.+
T Consensus 170 ~~~~ 173 (368)
T PRK08649 170 VSKE 173 (368)
T ss_pred cCCc
Confidence 5543
No 20
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.02 E-value=0.0025 Score=59.10 Aligned_cols=106 Identities=23% Similarity=0.228 Sum_probs=71.4
Q ss_pred Hhccccccccccc-CCCCCCcceeecC-cccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHh
Q 026410 73 AFHRITFRPRILV-DVSRIDLSTTILD-YKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (239)
Q Consensus 73 af~ri~l~PRvL~-dv~~~Dtst~llG-~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~ 150 (239)
.|+++.|+|.... +.+++|++|.|.+ ..+..||+.|||.+. .|..+|.+.+++|-.-++... .++|+..+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~~--~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHRN--MSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeCC--CCHHHHHH
Confidence 4899999998643 5678999999998 889999999999653 245677777787776666532 44566543
Q ss_pred hc----CCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEee
Q 026410 151 SC----NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 151 ~~----~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTV 188 (239)
.. +.....+.. .. +....+.++.+.++|++.|+|+.
T Consensus 75 ~i~~vk~~l~v~~~~-~~-~~~~~~~~~~l~eagv~~I~vd~ 114 (325)
T cd00381 75 EVRKVKGRLLVGAAV-GT-REDDKERAEALVEAGVDVIVIDS 114 (325)
T ss_pred HHHHhccCceEEEec-CC-ChhHHHHHHHHHhcCCCEEEEEC
Confidence 32 222222332 22 23345667777789999888765
No 21
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=94.84 E-value=0.15 Score=48.51 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=48.0
Q ss_pred HHhccccccccc-ccCCCCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecC
Q 026410 72 EAFHRITFRPRI-LVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSF 139 (239)
Q Consensus 72 ~af~ri~l~PRv-L~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs 139 (239)
-.|++|.|+|.- =++-+++||+..+=+.++..||+.|||++.. +..++.++.++|-+-++|.
T Consensus 13 ~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsa 75 (369)
T TIGR01304 13 YSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNL 75 (369)
T ss_pred CCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccc
Confidence 369999999974 3366778888888778899999999997542 4577888888888666764
No 22
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.85 E-value=0.42 Score=46.02 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=50.3
Q ss_pred Hhccccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHH
Q 026410 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA 149 (239)
Q Consensus 73 af~ri~l~PRvL~-dv~~~Dtst~ll-G~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia 149 (239)
.|+++.|+|..-. ..+++|++|.|. ...+..||+-|||... .+..+|.|..++|-.-+++. ..++|++.
T Consensus 11 tfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 11 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred CccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 4899999998543 335678888775 4567899999999643 25578888888887777763 46677654
No 23
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=92.43 E-value=0.13 Score=48.69 Aligned_cols=121 Identities=23% Similarity=0.236 Sum_probs=66.3
Q ss_pred Hhcccccccccc---cCCCCCCcceee-cCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHH-
Q 026410 73 AFHRITFRPRIL---VDVSRIDLSTTI-LDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEE- 147 (239)
Q Consensus 73 af~ri~l~PRvL---~dv~~~Dtst~l-lG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~slee- 147 (239)
.|+++.|+|..- +...++|+++.+ =+.++..||+-|||-.. .|..+|.+-++.|-..++--. .++|+
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtV------te~~mAiama~~Gglgvih~~--~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTV------TESEMAIAMARLGGLGVIHRN--MSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTT------SSHHHHHHHHHTTSEEEEESS--SCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCcccc------chHHHHHHHHHhcCCceecCC--CCHHHH
Confidence 499999999974 444556666445 58899999999997322 356778888888888887543 44543
Q ss_pred ------HHhhcC-------CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCch------hHhhcCCC
Q 026410 148 ------VAASCN-------AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRRE------ADIKNKMI 205 (239)
Q Consensus 148 ------ia~~~~-------~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re------~d~r~~f~ 205 (239)
|+...| +....-.-+.-.. ...+.++...++|++.|+|++ +. |.-+ +.+|..|.
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~-~~~er~~~L~~agvD~ivID~--a~-g~s~~~~~~ik~ik~~~~ 148 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD-DDFERAEALVEAGVDVIVIDS--AH-GHSEHVIDMIKKIKKKFP 148 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESST-CHHHHHHHHHHTT-SEEEEE---SS-TTSHHHHHHHHHHHHHST
T ss_pred HHHHhhhccccccccccccccceEEEEecCCH-HHHHHHHHHHHcCCCEEEccc--cC-ccHHHHHHHHHHHHHhCC
Confidence 222111 1111112222111 124555556678999887654 33 4444 45555553
No 24
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=91.54 E-value=0.83 Score=43.05 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=70.3
Q ss_pred Hhccccccccccc--CCCCCCcceeecCc-----ccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcH
Q 026410 73 AFHRITFRPRILV--DVSRIDLSTTILDY-----KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSI 145 (239)
Q Consensus 73 af~ri~l~PRvL~--dv~~~Dtst~llG~-----~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sl 145 (239)
.|+++.|+|+--. .-+++|++++|-.+ .+..||+-|.|- .-+|..+|.+-++.|...++-- .+++
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMd------tv~~~~mA~~la~~g~~~~iHk--~~~~ 80 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMD------TVGTFEMAAALSQHSIFTAIHK--HYSV 80 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCC------cccCHHHHHHHHHCCCeEEEee--CCCH
Confidence 4899999998322 33678999998644 689999988752 2368889999999999999854 3456
Q ss_pred HHHHhh----cCCceeEEEEe-ecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 026410 146 EEVAAS----CNAVRFYQLYV-FKKRDIAATLVQRAERNGFKALVLTADTPRLGRRE 197 (239)
Q Consensus 146 eeia~~----~~~~~wfQLy~-~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re 197 (239)
|+-++. .+... -++.+ -.-.+...+.++...++|...=+|.||+.. |.-+
T Consensus 81 e~~~~~v~~~~~~~~-~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~Ah-Ghs~ 135 (343)
T TIGR01305 81 DEWKAFATNSSPDCL-QNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVAN-GYSE 135 (343)
T ss_pred HHHHHHHHhhccccc-ceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCC-CcHH
Confidence 663322 22111 12222 222333345566666676333444555544 4433
No 25
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=90.76 E-value=2 Score=39.47 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=57.0
Q ss_pred CcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCC-CCC-------cHHHHHhhc--CCceeEEEEeecCHH
Q 026410 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFT-SSS-------SIEEVAASC--NAVRFYQLYVFKKRD 167 (239)
Q Consensus 98 G~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~-ss~-------sleeia~~~--~~~~wfQLy~~~dr~ 167 (239)
|..+..|+++|||.+.. +.+.-+.+++.|.-++.+-+ +.. ...++.... +.+...||. -.+.+
T Consensus 3 ~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~~ 75 (319)
T TIGR00737 3 NIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDPD 75 (319)
T ss_pred CccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCHH
Confidence 56788999999986543 33445556666655554432 111 122222222 245668884 45677
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 026410 168 IAATLVQRAERNGFKALVLTADTPR 192 (239)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~ 192 (239)
...+..++++++||++|=|..-.|.
T Consensus 76 ~~~~aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 76 TMAEAAKINEELGADIIDINMGCPV 100 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCH
Confidence 7788899999999999999988874
No 26
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=89.61 E-value=2.8 Score=38.86 Aligned_cols=37 Identities=16% Similarity=-0.015 Sum_probs=28.7
Q ss_pred CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 026410 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p 191 (239)
.+.+.|+.- .+.+...+.+++++++|+++|-|.+-.+
T Consensus 100 ~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~ 136 (325)
T cd04739 100 IPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYAL 136 (325)
T ss_pred CeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 456778743 3556667899999999999999999863
No 27
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=89.22 E-value=3.4 Score=39.57 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=29.8
Q ss_pred ceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 155 ~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
+.+.-+.-..+.+...+++++++++|+++|-|.+-+|..
T Consensus 115 pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 115 ILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred cEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 344444333477888899999999999999999988764
No 28
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.88 E-value=3.4 Score=39.04 Aligned_cols=69 Identities=26% Similarity=0.327 Sum_probs=50.5
Q ss_pred Hhccccccccccc--CCCCCCcceeec-----CcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcH
Q 026410 73 AFHRITFRPRILV--DVSRIDLSTTIL-----DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSI 145 (239)
Q Consensus 73 af~ri~l~PRvL~--dv~~~Dtst~ll-----G~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sl 145 (239)
.|+++.|+|+--. .-+++|++.+|- -+.+..||+-|+|- .=+|..+|.+-++.|...++-- .+++
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMd------TV~~~~mA~~la~~g~~~~iHk--~~~~ 81 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMD------TVGTFEMAKALASFDILTAVHK--HYSV 81 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCC------ccccHHHHHHHHHCCCeEEEec--CCCH
Confidence 5899999999543 225778877664 35567999999862 2368889999999999999853 3467
Q ss_pred HHHH
Q 026410 146 EEVA 149 (239)
Q Consensus 146 eeia 149 (239)
|+-+
T Consensus 82 e~~~ 85 (346)
T PRK05096 82 EEWA 85 (346)
T ss_pred HHHH
Confidence 7643
No 29
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=88.73 E-value=4.6 Score=36.55 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=57.5
Q ss_pred CcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceee-cCC--------------------------CCC
Q 026410 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFT--------------------------SSS 143 (239)
Q Consensus 91 Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~l-Ss~--------------------------ss~ 143 (239)
|++|+++|.++.-||++|+-.. ...+ ..++...+.|..+++ .|. .+.
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~----~~~~--~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTF----GFGG--EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCC----CCCH--HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 6899999999999999986211 1122 234444444443332 221 123
Q ss_pred cHHH----HHhhc---CCceeEEEEeecCHHHHHHHHHHHHHcC-CcEEEEeecCCC
Q 026410 144 SIEE----VAASC---NAVRFYQLYVFKKRDIAATLVQRAERNG-FKALVLTADTPR 192 (239)
Q Consensus 144 slee----ia~~~---~~~~wfQLy~~~dr~~~~~li~rAe~aG-~~AlvvTVD~p~ 192 (239)
+++. +.... +.+...||.- .+.+...+..++++++| +++|-|.+=+|.
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~g-~~~~~~~~~a~~~~~aG~~D~iElN~~cP~ 130 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVAG-STEEEYAEVAEKLSKAPNVDAIELNISCPN 130 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEecc-CCHHHHHHHHHHHhccCCcCEEEEECCCCC
Confidence 3333 32221 2345677743 35667788899999999 999999775554
No 30
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=88.71 E-value=7 Score=36.15 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=34.7
Q ss_pred chhcHHHHHHHhcccccccccc-cCCCCCCcceeecCcccCcceEecc
Q 026410 63 DEHTLKENVEAFHRITFRPRIL-VDVSRIDLSTTILDYKISAPIIIAP 109 (239)
Q Consensus 63 de~T~~~N~~af~ri~l~PRvL-~dv~~~Dtst~llG~~~s~Pi~iaP 109 (239)
-|.+++-...+++.+...|=.+ +...++|++|+++|.++..||++|.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As 56 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA 56 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc
Confidence 4556666777776665555322 3567889999999999999998865
No 31
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=87.65 E-value=5.8 Score=36.10 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=32.5
Q ss_pred CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
.+...|+.=..+.+...+.+++++++|+++|-|.+.+|..
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~ 139 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG 139 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 4567787544377777888999998999999999999986
No 32
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=86.15 E-value=16 Score=34.14 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=55.5
Q ss_pred CCCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeec-CCC------------------------
Q 026410 87 VSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FTS------------------------ 141 (239)
Q Consensus 87 v~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lS-s~s------------------------ 141 (239)
..+++++|+++|.++..||++|. |.. ..+| ..+.....|..+++- |.+
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~~----~~~~--~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GFD----KNGE--AIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CCC----CChH--HHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 45778999999999999998865 322 2333 334455555544332 211
Q ss_pred ----CCcHH----HHHhhc-CCceeEEEEeec------CHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 142 ----SSSIE----EVAASC-NAVRFYQLYVFK------KRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 142 ----s~sle----eia~~~-~~~~wfQLy~~~------dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
+..+| ++.+.. .-+.+..+.-.+ ..+...+++++++. ++++|.+.+=+|..
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~ 182 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNT 182 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCC
Confidence 11233 232221 123455553321 23344555555544 59999999988876
No 33
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=85.52 E-value=12 Score=33.76 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=32.2
Q ss_pred CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCc
Q 026410 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRR 196 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~R 196 (239)
.+...||.- .+.+...+..++++++|+++|-|++-+|....|
T Consensus 90 ~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~ 131 (296)
T cd04740 90 TPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGG 131 (296)
T ss_pred CcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC
Confidence 456778754 345666788999999999999999998875443
No 34
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=84.83 E-value=9.7 Score=34.04 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=31.5
Q ss_pred CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 026410 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGR 195 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~ 195 (239)
.+...||.-. +.+...+.+++++++|+++|-|++.+|....
T Consensus 99 ~pvi~si~g~-~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~ 139 (289)
T cd02810 99 QPLIASVGGS-SKEDYVELARKIERAGAKALELNLSCPNVGG 139 (289)
T ss_pred CeEEEEeccC-CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC
Confidence 3456676433 5667788899999999999999999987653
No 35
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=83.96 E-value=14 Score=33.35 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=57.7
Q ss_pred cceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeec-C--------------------------CCCCc
Q 026410 92 LSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-F--------------------------TSSSS 144 (239)
Q Consensus 92 tst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lS-s--------------------------~ss~s 144 (239)
++|+++|.++..||++||.... ...| ..+...+.|..+++. | ..+.+
T Consensus 1 l~~~~~g~~l~npi~~aag~~~----~~~~--~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMG----SGVE--SLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCC----CCHH--HHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 4789999999999999993211 1112 122233336555554 1 12223
Q ss_pred HHH----HHhh---cCCceeEEEEeecCHHHHHHHHHHHHHcC--CcEEEEeecCCCC
Q 026410 145 IEE----VAAS---CNAVRFYQLYVFKKRDIAATLVQRAERNG--FKALVLTADTPRL 193 (239)
Q Consensus 145 lee----ia~~---~~~~~wfQLy~~~dr~~~~~li~rAe~aG--~~AlvvTVD~p~~ 193 (239)
++. +... .+.+...||.- .+.+...+.++++++++ +++|-|.+=+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g-~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~ 131 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG-SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV 131 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec-CCHHHHHHHHHHHHhccCccCEEEEECCCCCC
Confidence 433 2221 12357889863 45666677888888764 8999999888875
No 36
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=82.16 E-value=5.9 Score=39.02 Aligned_cols=108 Identities=22% Similarity=0.339 Sum_probs=67.8
Q ss_pred Hhccccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHh
Q 026410 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (239)
Q Consensus 73 af~ri~l~PRvL~-dv~~~Dtst~ll-G~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~ 150 (239)
.|+.+.|.|..-. ..+++|++|.+- ...+..||+-|||.-. .|..+|.+-+++|=.-++. ...++|+.++
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~v------t~~~ma~a~a~~GglGvi~--~~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTV------TEHKMAIAMALMGGIGVIH--NNCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCcccc------ccHHHHHHHHHCCCeEEec--CCCCHHHHHH
Confidence 3899999998543 235678887765 4478899999987432 4567777888887777774 3567887665
Q ss_pred hcC------CceeEE-EEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q 026410 151 SCN------AVRFYQ-LYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (239)
Q Consensus 151 ~~~------~~~wfQ-Ly~~~dr~~~~~li~rAe~aG~~AlvvTVD 189 (239)
... ...... +.+..+ .-..+.++...+.++..+.|+-+
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~pd-~tv~eA~~lm~~~~~s~vpVvd~ 135 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSPN-HTVADVLEIKEKKGFSSILITVD 135 (495)
T ss_pred HHhhccccccccccCCeecCCC-CCHHHHHHHHHHcCCcEEEEEeC
Confidence 431 100001 111222 23345566667788988888654
No 37
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=81.25 E-value=6.7 Score=33.78 Aligned_cols=81 Identities=19% Similarity=0.098 Sum_probs=45.5
Q ss_pred CcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHH-------HhhcCCceeEEEEeecCHHHHHHHHH
Q 026410 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV-------AASCNAVRFYQLYVFKKRDIAATLVQ 174 (239)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleei-------a~~~~~~~wfQLy~~~dr~~~~~li~ 174 (239)
..||+.|||.+. . ....++++.+.|-.-.+|... .+.+++ .+..+.+.-+++.....+....+.++
T Consensus 2 ~~pi~~a~m~g~--~----~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGV--S----TPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCC--C----CHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 469999998654 2 334555555666434444321 123322 22221222345554332134568899
Q ss_pred HHHHcCCcEEEEeec
Q 026410 175 RAERNGFKALVLTAD 189 (239)
Q Consensus 175 rAe~aG~~AlvvTVD 189 (239)
.++++|+++|.+.-.
T Consensus 75 ~~~~~g~d~v~l~~~ 89 (236)
T cd04730 75 VALEEGVPVVSFSFG 89 (236)
T ss_pred HHHhCCCCEEEEcCC
Confidence 999999999998644
No 38
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=80.40 E-value=6.8 Score=36.07 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=50.1
Q ss_pred eeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHH-------HhhcCCceeEEEEeecCH
Q 026410 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV-------AASCNAVRFYQLYVFKKR 166 (239)
Q Consensus 94 t~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleei-------a~~~~~~~wfQLy~~~dr 166 (239)
|++||. ..||+.+||++. . ...++.|..++|..-+++... .+.|++ ++..+.+ |.+.+....
T Consensus 5 ~~~lgi--~~Pii~apM~~~--s----~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~p--fgvn~~~~~ 73 (307)
T TIGR03151 5 CDLLGI--EYPIFQGGMAWV--A----TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKP--FGVNIMLLS 73 (307)
T ss_pred hHHhCC--CCCEEcCCCCCC--C----CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCC--cEEeeecCC
Confidence 345654 579999999763 2 346888888888888887543 344443 2222222 122221111
Q ss_pred HHHHHHHHHHHHcCCcEEEEeec
Q 026410 167 DIAATLVQRAERNGFKALVLTAD 189 (239)
Q Consensus 167 ~~~~~li~rAe~aG~~AlvvTVD 189 (239)
....++++.+.+.|++.+.++.-
T Consensus 74 ~~~~~~~~~~~~~~v~~v~~~~g 96 (307)
T TIGR03151 74 PFVDELVDLVIEEKVPVVTTGAG 96 (307)
T ss_pred CCHHHHHHHHHhCCCCEEEEcCC
Confidence 12346677777889988877543
No 39
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=79.09 E-value=22 Score=33.91 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=31.6
Q ss_pred CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 026410 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (239)
.+...||.-..+.+...+..+.++++|+++|-|.+-.|.
T Consensus 100 ~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~ 138 (420)
T PRK08318 100 RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH 138 (420)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 345778764436777788999999999999999999987
No 40
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=78.92 E-value=15 Score=33.94 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=26.7
Q ss_pred CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecC
Q 026410 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT 190 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~ 190 (239)
.+...|+.- .+.+...+.+++++++|+++|-|.+-.
T Consensus 102 ~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~sc 137 (334)
T PRK07565 102 IPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYY 137 (334)
T ss_pred CcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 456777754 344555788899999999999998754
No 41
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=76.49 E-value=7.1 Score=38.16 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=58.8
Q ss_pred Hhccccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHh
Q 026410 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (239)
Q Consensus 73 af~ri~l~PRvL~-dv~~~Dtst~ll-G~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~ 150 (239)
.|+++.|.|..-. ..+++|++|.+- +..+..||+-|||... .+.|++.+= .+.|-.-++.. ..+.|+..+
T Consensus 10 t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~v----T~~ela~av--a~~GglG~i~~--~~~~e~~~~ 81 (486)
T PRK05567 10 TFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTV----TEARMAIAM--AREGGIGVIHK--NMSIEEQAE 81 (486)
T ss_pred CccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCc----CHHHHHHHH--HhCCCCCEecC--CCCHHHHHH
Confidence 4899999998543 235678887764 5667899999998644 234544433 33333334442 334555432
Q ss_pred hc------CCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 151 SC------NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 151 ~~------~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
.. .....-.........-..+.++...+.++..+.|+
T Consensus 82 ~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVv 124 (486)
T PRK05567 82 EVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVV 124 (486)
T ss_pred HHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEE
Confidence 21 11111112222222334566666677788777765
No 42
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=76.19 E-value=19 Score=28.86 Aligned_cols=74 Identities=20% Similarity=0.136 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhcCCceeecCC-C-----C--Cc---HHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 119 EGEVATARAAASCNTIMVLSFT-S-----S--SS---IEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 119 ~gE~alArAA~~~gi~~~lSs~-s-----s--~s---leeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
+.....++.+.+.|+-++.... . . .. ++++....+.+...|++.....+......++++++|+++|.|+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~ 91 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIH 91 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEe
Confidence 3456778888887764433221 1 1 11 4445554456778899876655544444678999999999999
Q ss_pred ecCCC
Q 026410 188 ADTPR 192 (239)
Q Consensus 188 VD~p~ 192 (239)
...+.
T Consensus 92 ~~~~~ 96 (200)
T cd04722 92 GAVGY 96 (200)
T ss_pred ccCCc
Confidence 98864
No 43
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=76.18 E-value=11 Score=37.08 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=50.4
Q ss_pred HhcccccccccccC-C-CCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHh
Q 026410 73 AFHRITFRPRILVD-V-SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (239)
Q Consensus 73 af~ri~l~PRvL~d-v-~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~ 150 (239)
.|+.+.|+|..-.- . +++|++|. +..++..||+-|||- .=-|..+|.+-+..|=..++-. +.++|+-++
T Consensus 13 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~P~vsa~md------tvTe~~MAi~~A~~GGigvIh~--n~~i~~qae 83 (475)
T TIGR01303 13 TYNDVFMVPSRSEVGSRFDVDLSTA-DGTGTTIPLVVANMT------AVAGRRMAETVARRGGIVILPQ--DLPIPAVKQ 83 (475)
T ss_pred CccceEEccCccCccCCCceeeccc-ccCccccceeeccch------hhHHHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 48999999985432 2 36788887 668999999999972 2257778888788877777754 456766544
Q ss_pred h
Q 026410 151 S 151 (239)
Q Consensus 151 ~ 151 (239)
.
T Consensus 84 ~ 84 (475)
T TIGR01303 84 T 84 (475)
T ss_pred H
Confidence 3
No 44
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=75.15 E-value=32 Score=31.61 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=55.8
Q ss_pred CcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceee-cCC--------------------------CCC
Q 026410 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFT--------------------------SSS 143 (239)
Q Consensus 91 Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~l-Ss~--------------------------ss~ 143 (239)
|++|+++|.+|.-||++|.-... ..+|. .+...+.|..+++ .|. .+.
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~----~~~e~--~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC----MTKEE--LEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC----CCHHH--HHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 67999999999999999863221 11222 2224444443332 121 223
Q ss_pred cHHHHH----hh---cC-CceeEEEEeecCHHHHHHHHHHHHHcC-CcEEEEeecCCCC
Q 026410 144 SIEEVA----AS---CN-AVRFYQLYVFKKRDIAATLVQRAERNG-FKALVLTADTPRL 193 (239)
Q Consensus 144 sleeia----~~---~~-~~~wfQLy~~~dr~~~~~li~rAe~aG-~~AlvvTVD~p~~ 193 (239)
.++... +. .+ .+...++ .-.+.+...++.++++++| +++|-|.+-+|..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si-~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~ 132 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSV-VGLSPEETHTILKKIQASDFNGLVELNLSCPNV 132 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE-EeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence 333322 21 11 2333344 2335666678889999998 9999999998843
No 45
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=72.58 E-value=30 Score=31.10 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=55.3
Q ss_pred cceEeccccchhccCcHHHHHHHHHHhhcCCceee--cC---CCCCcHHHH-------HhhcCC--ceeEEEEeecCHHH
Q 026410 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMVL--SF---TSSSSIEEV-------AASCNA--VRFYQLYVFKKRDI 168 (239)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~l--Ss---~ss~sleei-------a~~~~~--~~wfQLy~~~dr~~ 168 (239)
.|.++.|+.-.+-.+.++-..+++-..+.|+--++ |+ +.+.|.+|- .+..++ +.+.++-- .+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 46677787655556777778888888888875433 33 334566552 222332 33444322 35667
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 026410 169 AATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTV 188 (239)
+.++.+.|+++|++++++.-
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 78899999999999999974
No 46
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=71.55 E-value=26 Score=31.97 Aligned_cols=85 Identities=13% Similarity=0.004 Sum_probs=56.0
Q ss_pred cceEeccccchhccCcHHHHHHHHHHhhcCCcee--ecC---CCCCcHHHH-------HhhcCC--ceeEEEEeecCHHH
Q 026410 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSF---TSSSSIEEV-------AASCNA--VRFYQLYVFKKRDI 168 (239)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~--lSs---~ss~sleei-------a~~~~~--~~wfQLy~~~dr~~ 168 (239)
.|.++.|+.-.+-.+.++-..+++-..+.|+--+ .|| +.+.|.||- .+..++ +.+.++- .+-..
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHH
Confidence 5777888765555567777788888888887543 344 234566652 222332 3345553 35667
Q ss_pred HHHHHHHHHHcCCcEEEEeec
Q 026410 169 AATLVQRAERNGFKALVLTAD 189 (239)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTVD 189 (239)
+.+++++|+++|++++++.--
T Consensus 90 ~i~~~~~a~~~Gadav~~~pP 110 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLPP 110 (303)
T ss_pred HHHHHHHHHHhCCCEEEECCC
Confidence 789999999999999988553
No 47
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=71.37 E-value=24 Score=32.64 Aligned_cols=88 Identities=14% Similarity=0.101 Sum_probs=56.6
Q ss_pred CcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCC-CcHH---HH---H-hhc--CCceeEEEEeecCHH
Q 026410 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS-SSIE---EV---A-ASC--NAVRFYQLYVFKKRD 167 (239)
Q Consensus 98 G~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss-~sle---ei---a-~~~--~~~~wfQLy~~~dr~ 167 (239)
+..+..|+++|||++.. +...-+.|++.|..++.+-+-+ .++. +. . ... +.+.-.||. -.|.+
T Consensus 5 ~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~~~~ 77 (321)
T PRK10415 5 QYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GSDPK 77 (321)
T ss_pred CccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CCCHH
Confidence 45678899999996553 4455666777776665544322 1110 11 1 111 234457883 55677
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 026410 168 IAATLVQRAERNGFKALVLTADTPR 192 (239)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~ 192 (239)
...+..+++++.|++.|=+..=+|.
T Consensus 78 ~~~~aa~~~~~~g~d~IdlN~gCP~ 102 (321)
T PRK10415 78 EMADAARINVESGAQIIDINMGCPA 102 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCH
Confidence 7777788888899999999999886
No 48
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=71.15 E-value=19 Score=33.21 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=51.1
Q ss_pred cceEeccccchhccCcHHHHHHHHHHhhcC-CceeecCCC--------CCcHHHHHh------hc--CCceeEEEEeecC
Q 026410 103 APIIIAPTALHKLANPEGEVATARAAASCN-TIMVLSFTS--------SSSIEEVAA------SC--NAVRFYQLYVFKK 165 (239)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~alArAA~~~g-i~~~lSs~s--------s~sleeia~------~~--~~~~wfQLy~~~d 165 (239)
||+++|||++.. +...=+.+++.| .-.+.+-+- .....++.. .. +.+...||. -.|
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 699999997653 233334445555 334433221 112222221 11 256788986 556
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecCCC
Q 026410 166 RDIAATLVQRAERNGFKALVLTADTPR 192 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (239)
.+...+..++++++||++|=|..-.|.
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~ 100 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPS 100 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 777778888999999999988888875
No 49
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=71.14 E-value=27 Score=31.55 Aligned_cols=84 Identities=13% Similarity=0.023 Sum_probs=55.7
Q ss_pred cceEeccccchhccCcHHHHHHHHHHhhcCCcee--ecC---CCCCcHHHHH-------hhcCC--ceeEEEEeecCHHH
Q 026410 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (239)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~--lSs---~ss~sleeia-------~~~~~--~~wfQLy~~~dr~~ 168 (239)
.|.++.|+.-.+-.+.++-..+++-..+.|+--+ .|| +.+.|.||-. +..++ +-+.++- . +-..
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 3667778765555577777888888888887543 444 2345666532 22222 3355553 3 6677
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 026410 169 AATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTV 188 (239)
+.++.++|+++|++++++.-
T Consensus 83 ~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 78999999999999999954
No 50
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=70.83 E-value=15 Score=36.11 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=61.0
Q ss_pred HhcccccccccccC-C-CCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHh
Q 026410 73 AFHRITFRPRILVD-V-SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (239)
Q Consensus 73 af~ri~l~PRvL~d-v-~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~ 150 (239)
.|+.+.|.|..-.- . +++|++|+ ++..+..||+-|||-.. .|..+|.+-++.|=.-++- ...+.++..+
T Consensus 14 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~Pi~sa~Mdtv------t~~~MAiaLAr~GGiGvih--~nl~~~~q~~ 84 (479)
T PRK07807 14 TYDDVFLVPSRSDVGSRFDVDLSTA-DGTGTTIPLVVANMTAV------AGRRMAETVARRGGLVVLP--QDIPIDVVAE 84 (479)
T ss_pred CccceEecccccCccCCCceecccC-CCCccccceeecCCcch------hHHHHHHHHHHCCCceEee--CCCCHHHHHH
Confidence 48999999986542 2 36788887 58899999999997432 3666777777766333332 2234444333
Q ss_pred hcCCceeEE------EEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 151 SCNAVRFYQ------LYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 151 ~~~~~~wfQ------Ly~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
......-.+ +.+..+. -..+.+++..+.++..++|+
T Consensus 85 ~l~~VKv~~iMi~~pvtv~~d~-tv~eA~~~m~~~~~s~l~VV 126 (479)
T PRK07807 85 VVAWVKSRDLVFDTPVTLSPDD-TVGDALALLPKRAHGAVVVV 126 (479)
T ss_pred HHhhcccccccccCCeEECCCC-CHHHHHHHHHhcCCceEEEE
Confidence 211000001 1222222 23455556666778777774
No 51
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=70.06 E-value=23 Score=27.48 Aligned_cols=55 Identities=9% Similarity=0.252 Sum_probs=41.8
Q ss_pred CceeecCCCCCcHHHHHhhcCC-----------ceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 133 TIMVLSFTSSSSIEEVAASCNA-----------VRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 133 i~~~lSs~ss~sleeia~~~~~-----------~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
-.++.=......++++.+..|| ..|+-+...-+++...+++.+.+++|++.|.++
T Consensus 29 ~~~v~~Nvp~~~l~~v~~ilPg~~~PTVs~l~~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~ 94 (100)
T TIGR03455 29 KVLLMMNVPRDNLDEVRALLPGLEGPTVSPLADEGWVAVHAVVDEKVVNELIDKLKAAGARDILVL 94 (100)
T ss_pred eeEEEEeCChhhHHHHHHhcCCCCCCCcCcCCCCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 3344445556677877765431 269888888899999999999999999999875
No 52
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=69.84 E-value=6.9 Score=28.90 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=36.9
Q ss_pred CCCCCcHHHHHhhcC-----------CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 139 FTSSSSIEEVAASCN-----------AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 139 s~ss~sleeia~~~~-----------~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
.....++|++.+..| +..|+-+...=+++.+.+++.+.+++|+..|+++
T Consensus 11 Nvp~~~l~~v~~ilPg~~~PTVs~L~~~~w~AV~~vV~~~~~~~~~~~Lk~~GA~~Ilv~ 70 (75)
T PF08029_consen 11 NVPRESLEEVIKILPGLKSPTVSPLADEDWVAVHAVVPEKQVWDLMDKLKAAGASDILVL 70 (75)
T ss_dssp EEECCCHHHHHHHS--SSS-EEEE-SSTTEEEEEEEEECCCHHHHHHHHHCTT-EEEEEE
T ss_pred eCCHHHHHHHHHhCCCCCCCceeecCCCCEEEEEEEecHHHHHHHHHHHHHcCCCEEEEE
Confidence 344567888877654 2358888777778888999999999999999875
No 53
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=68.74 E-value=12 Score=34.30 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~sleeia-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (239)
+.+-=.++.+||++.+.|.++..... .+++.+. +...-+-..+| |.....+.+.+|.++||.-++
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM 100 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHL----DHHESLDDIRQKVHAGVRSAM 100 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEe
Confidence 44555899999999999999975322 2444432 22223334444 777777889999999999988
Q ss_pred Ee
Q 026410 186 LT 187 (239)
Q Consensus 186 vT 187 (239)
++
T Consensus 101 ~D 102 (282)
T TIGR01858 101 ID 102 (282)
T ss_pred ec
Confidence 75
No 54
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=68.53 E-value=23 Score=34.31 Aligned_cols=109 Identities=25% Similarity=0.333 Sum_probs=59.8
Q ss_pred Hhccccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHh
Q 026410 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (239)
Q Consensus 73 af~ri~l~PRvL~-dv~~~Dtst~ll-G~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~ 150 (239)
.|+.+.|.|..-. ..+++|++|.+= +.+++.||+-|||.-. .+.|.+.+ -+..|-.-++-. ..++|+-++
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtv----Te~ema~~--ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTV----TESRMAIA--MAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCcc----CHHHHHHH--HHhcCCCceeec--CCCHHHHHH
Confidence 3899999998543 235678888876 7899999999998532 23444333 222222222321 234544332
Q ss_pred hc------CCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q 026410 151 SC------NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (239)
Q Consensus 151 ~~------~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD 189 (239)
.. ....--++.......-..+.++...+.++..+.|+=+
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~ 119 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVED 119 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence 21 1110011111122233455666677788988888754
No 55
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=68.43 E-value=21 Score=35.27 Aligned_cols=108 Identities=20% Similarity=0.288 Sum_probs=62.2
Q ss_pred Hhccccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHh
Q 026410 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (239)
Q Consensus 73 af~ri~l~PRvL~-dv~~~Dtst~ll-G~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~ 150 (239)
.|+.+.|.|..-. ..+++|++|.+- ...+..||+-|||.... |..+|.|-..+|-.-++.. ..+.|+..+
T Consensus 23 tfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~~ 94 (505)
T PLN02274 23 TYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQAA 94 (505)
T ss_pred CccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHHH
Confidence 4899999998543 224567776553 34567899999985432 4566666666665546653 345665433
Q ss_pred hc------C-CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q 026410 151 SC------N-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (239)
Q Consensus 151 ~~------~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD 189 (239)
.. . +..---+.+..|. -+.+.++...+.++..+.|+-|
T Consensus 95 ~Irkvk~~~~gmi~dpvtV~pd~-tV~dA~~lm~~~~~~~lpVvD~ 139 (505)
T PLN02274 95 IVRKAKSRRVGFVSDPVVKSPSS-TISSLDELKASRGFSSVCVTET 139 (505)
T ss_pred HHHHhhcccccccCCCeeeCCCC-cHHHHHHHHHhcCCceEEEEeC
Confidence 21 1 1000011222332 3344566667788988888643
No 56
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=67.85 E-value=12 Score=34.44 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=45.9
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----CcHHHH-------HhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEV-------AASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~sleei-------a~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (239)
+.+.=.++.+||++.+.|.++..... ..++.+ ++...-+-..+| |.....+.+++|.++||.-++
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHL----DHg~~~e~i~~Ai~~GftSVM 102 (284)
T PRK09195 27 NLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHL----DHHEKFDDIAQKVRSGVRSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEE
Confidence 44556899999999999999975321 334443 222222333344 777678999999999999987
Q ss_pred Ee
Q 026410 186 LT 187 (239)
Q Consensus 186 vT 187 (239)
++
T Consensus 103 ~D 104 (284)
T PRK09195 103 ID 104 (284)
T ss_pred eC
Confidence 75
No 57
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=67.46 E-value=14 Score=33.80 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----CcHHHHHh-------hcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVAA-------SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~sleeia~-------~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (239)
+.+.=.++.+||++.+.|.++..... .+++.+.. ...-+-..+| |.....+.+.+|.++||..++
T Consensus 22 n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHL----DH~~~~~~i~~ai~~GftSVM 97 (276)
T cd00947 22 NLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHL----DHGSSFELIKRAIRAGFSSVM 97 (276)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCCEEE
Confidence 44555899999999999999976422 33443322 2223444454 666667888999999999988
Q ss_pred Eee
Q 026410 186 LTA 188 (239)
Q Consensus 186 vTV 188 (239)
++-
T Consensus 98 iD~ 100 (276)
T cd00947 98 IDG 100 (276)
T ss_pred eCC
Confidence 763
No 58
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=67.20 E-value=6.6 Score=36.05 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHhhcCCceeecCCCC----CcHHHH-------HhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q 026410 118 PEGEVATARAAASCNTIMVLSFTSS----SSIEEV-------AASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (239)
Q Consensus 118 p~gE~alArAA~~~gi~~~lSs~ss----~sleei-------a~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alvv 186 (239)
.+-=.++.+||++.+.|.++....+ .+++.+ ++...-+-+.+| |.....+.+++|.++||.-+++
T Consensus 27 ~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHL----DH~~~~e~i~~ai~~GftSVM~ 102 (287)
T PF01116_consen 27 LETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHL----DHGKDFEDIKRAIDAGFTSVMI 102 (287)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEE----EEE-SHHHHHHHHHHTSSEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeec----ccCCCHHHHHHHHHhCcccccc
Confidence 3445799999999999999975422 123332 222344567777 6666688899999999999876
Q ss_pred eec
Q 026410 187 TAD 189 (239)
Q Consensus 187 TVD 189 (239)
+--
T Consensus 103 DgS 105 (287)
T PF01116_consen 103 DGS 105 (287)
T ss_dssp E-T
T ss_pred cCC
Confidence 543
No 59
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=67.12 E-value=18 Score=34.49 Aligned_cols=48 Identities=25% Similarity=0.180 Sum_probs=37.7
Q ss_pred ccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHH
Q 026410 100 KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA 149 (239)
Q Consensus 100 ~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia 149 (239)
.+..||+++||++..+ ..+.-.++|.||..+|....++... .+.+++.
T Consensus 75 ~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~ 122 (392)
T cd02808 75 KLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEERE 122 (392)
T ss_pred ccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHh
Confidence 3588999999986665 4567899999999999999998644 4556554
No 60
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=66.12 E-value=48 Score=30.06 Aligned_cols=85 Identities=15% Similarity=0.000 Sum_probs=52.9
Q ss_pred cceEeccccchhccCcHHHHHHHHHHhhcC-Cc--eeecC---CCCCcHHHHH-------hhcCC--ceeEEEEeecCHH
Q 026410 103 APIIIAPTALHKLANPEGEVATARAAASCN-TI--MVLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRD 167 (239)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~alArAA~~~g-i~--~~lSs---~ss~sleeia-------~~~~~--~~wfQLy~~~dr~ 167 (239)
.|.++.|+--.+-.+.++=..+.+-..+.| +- ++.|| +.+.|.||-. +...+ +...++- ..+-+
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~~~t~ 83 (290)
T TIGR00683 5 FSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLK 83 (290)
T ss_pred EeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHH
Confidence 356777875555456677778888777777 43 34444 3445666532 22222 2233332 12456
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 026410 168 IAATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTV 188 (239)
.+.++.+.|+++|++++++.-
T Consensus 84 ~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEeC
Confidence 678999999999999999954
No 61
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=65.94 E-value=42 Score=27.94 Aligned_cols=90 Identities=14% Similarity=0.098 Sum_probs=62.9
Q ss_pred CcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhc--C--CceeEEEEeecCHHHHHHHH
Q 026410 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC--N--AVRFYQLYVFKKRDIAATLV 173 (239)
Q Consensus 98 G~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~--~--~~~wfQLy~~~dr~~~~~li 173 (239)
|++.. |+++++|..+ |.-|-.-++++-+..|.-.+....-+++ ||+..++ . ..--.=.+--.-.+...+++
T Consensus 10 g~rpr--vlvak~GlDg--Hd~gakvia~~l~d~GfeVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lv 84 (143)
T COG2185 10 GARPR--VLVAKLGLDG--HDRGAKVIARALADAGFEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLV 84 (143)
T ss_pred CCCce--EEEeccCccc--cccchHHHHHHHHhCCceEEecCCcCCH-HHHHHHHHhcCCCEEEEEeccchHHHHHHHHH
Confidence 44443 7899999665 7789999999999999999988766555 5555433 2 21111122223467778999
Q ss_pred HHHHHcCCcEEEEeecCCC
Q 026410 174 QRAERNGFKALVLTADTPR 192 (239)
Q Consensus 174 ~rAe~aG~~AlvvTVD~p~ 192 (239)
+..+++|.+.|.|-+=...
T Consensus 85 e~lre~G~~~i~v~~GGvi 103 (143)
T COG2185 85 EALREAGVEDILVVVGGVI 103 (143)
T ss_pred HHHHHhCCcceEEeecCcc
Confidence 9999999999996665443
No 62
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=65.82 E-value=15 Score=33.77 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~sleeia-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (239)
+.+.=.++.+||++.+.|.++..... .+++.+. +...-+-..+| |.....+.+++|-++||.-++
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM 102 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHL----DHHESLDDIRRKVHAGVRSAM 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEe
Confidence 44555899999999999999965321 2444432 22223344444 777778899999999999987
Q ss_pred Ee
Q 026410 186 LT 187 (239)
Q Consensus 186 vT 187 (239)
++
T Consensus 103 ~D 104 (286)
T PRK12738 103 ID 104 (286)
T ss_pred ec
Confidence 65
No 63
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=64.11 E-value=18 Score=33.27 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~sleeia-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (239)
+.+.=.++.+||++.+.|.++..... .+++.+. +...-+-..+| |.....+.+.+|.++||.-++
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHL----DH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHL----DHHEDLDDIKKKVRAGIRSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEE
Confidence 44555799999999999999975321 2344332 22223334444 666667889999999999877
Q ss_pred Ee
Q 026410 186 LT 187 (239)
Q Consensus 186 vT 187 (239)
++
T Consensus 103 iD 104 (284)
T PRK12737 103 ID 104 (284)
T ss_pred ec
Confidence 65
No 64
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=61.55 E-value=20 Score=32.89 Aligned_cols=73 Identities=21% Similarity=0.244 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----CcHHHHHh-------hcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVAA-------SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~sleeia~-------~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (239)
+.+-=.++.+||++.+.|.++..... ..++.++. ...-+-..+| |.....+.+.+|-++||..++
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHL----DH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHL----DHGTDFEQVMKCIRNGFTSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEE
Confidence 34455789999999999999976422 24444322 2223334444 777677889999999999988
Q ss_pred EeecCCCCCC
Q 026410 186 LTADTPRLGR 195 (239)
Q Consensus 186 vTVD~p~~g~ 195 (239)
++ ...+..
T Consensus 103 ~D--gS~lp~ 110 (284)
T PRK12857 103 ID--GSKLPL 110 (284)
T ss_pred Ee--CCCCCH
Confidence 75 444433
No 65
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=61.04 E-value=6.7 Score=37.41 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=32.4
Q ss_pred ccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCC
Q 026410 100 KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFT 140 (239)
Q Consensus 100 ~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ 140 (239)
++++||+++.|++..+ .++.-.++|+||..+|+.+..|..
T Consensus 63 ~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEG 102 (368)
T PF01645_consen 63 ELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEG 102 (368)
T ss_dssp HHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT
T ss_pred hheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCC
Confidence 3789999999988876 467889999999999999888864
No 66
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=60.64 E-value=80 Score=29.91 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=56.3
Q ss_pred ecCcccCcceEeccccch-hccCcHHHHHHHHHHhhcCCcee-----ecCCCCCcHHHHHh--------hc---CCceeE
Q 026410 96 ILDYKISAPIIIAPTALH-KLANPEGEVATARAAASCNTIMV-----LSFTSSSSIEEVAA--------SC---NAVRFY 158 (239)
Q Consensus 96 llG~~~s~Pi~iaP~g~~-~l~hp~gE~alArAA~~~gi~~~-----lSs~ss~sleeia~--------~~---~~~~wf 158 (239)
++|.. .-|++.+|+--. ++ .++.-..+++.....|+-.+ ++++...+.||-.+ +. +....+
T Consensus 124 ~~gv~-~rPli~Ti~kp~~gl-d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y 201 (367)
T cd08205 124 LLGVH-DRPLLGTIIKPSIGL-SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLY 201 (367)
T ss_pred HhCCC-CCCeeeeeeCCCCCC-CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceE
Confidence 45543 568888876433 43 45555677777777886665 33355566665211 11 233333
Q ss_pred EEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 159 QLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 159 QLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
-.-...+.+.+.++.+.|+++|+++++|..-....
T Consensus 202 ~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~ 236 (367)
T cd08205 202 APNITGDPDELRRRADRAVEAGANALLINPNLVGL 236 (367)
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCCEEEEecccccc
Confidence 33333455666777778889999998776654443
No 67
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=59.78 E-value=61 Score=28.68 Aligned_cols=131 Identities=17% Similarity=0.174 Sum_probs=65.2
Q ss_pred hhhcCCccchhcHHHHHHHhcccccccccccCCC-----CCCcc-eeecCcccCcceEeccccchhccCcHHH-HHHHHH
Q 026410 55 DFYAGGAEDEHTLKENVEAFHRITFRPRILVDVS-----RIDLS-TTILDYKISAPIIIAPTALHKLANPEGE-VATARA 127 (239)
Q Consensus 55 ~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~-----~~Dts-t~llG~~~s~Pi~iaP~g~~~l~hp~gE-~alArA 127 (239)
.-++||.+.-.++..=.+.|+-+.|..-+-.+-+ .++.. +..-...+..|+..-.+.+. .+.| ..+.+.
T Consensus 5 vl~SGGKDS~lAl~~~~~~~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~----~e~~~~~l~~~ 80 (222)
T TIGR00289 5 VLYSGGKDSILALYKALEEHEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE----EEKEVEDLAGQ 80 (222)
T ss_pred EEecCcHHHHHHHHHHHHcCeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCc----hhHHHHHHHHH
Confidence 3467888888876654443432222211111100 01110 11123334556555444322 2333 466677
Q ss_pred HhhcCCceeecC-CCC----CcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 026410 128 AASCNTIMVLSF-TSS----SSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (239)
Q Consensus 128 A~~~gi~~~lSs-~ss----~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g 194 (239)
.++.|+-.+++- ..+ .-+|.+++..+=...+.| |.+|++. ++ +-.+.|++|+++.|++..++
T Consensus 81 l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~gl~~~~PL-W~~d~~~---l~-e~i~~Gf~aiIv~v~~~gL~ 147 (222)
T TIGR00289 81 LGELDVEALCIGAIESNYQKSRIDKVCRELGLKSIAPL-WHADPEK---LM-YEVAEKFEVIIVSVSAMGLD 147 (222)
T ss_pred HHHcCCCEEEECccccHHHHHHHHHHHHHcCCEEeccc-cCCCHHH---HH-HHHHcCCeEEEEEEccCCCC
Confidence 777787665543 222 245666665541111222 1345543 33 33489999999999987665
No 68
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=58.27 E-value=84 Score=27.99 Aligned_cols=83 Identities=17% Similarity=0.056 Sum_probs=51.4
Q ss_pred ceEeccccchhccCcHHHHHHHHHHhhcCCcee--ecCC---CCCcHHHH-------HhhcCC--ceeEEEEeecCHHHH
Q 026410 104 PIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSFT---SSSSIEEV-------AASCNA--VRFYQLYVFKKRDIA 169 (239)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~--lSs~---ss~sleei-------a~~~~~--~~wfQLy~~~dr~~~ 169 (239)
|..+.|+.-.+-.+.++-...++-..+.|+--. .||. .+.|.+|- .+...+ +.+.++- ..+-+.+
T Consensus 6 ~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 84 (284)
T cd00950 6 TALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAEA 84 (284)
T ss_pred eeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHHH
Confidence 566677655555577777788888888776443 3332 23455542 222222 3334432 2245667
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 026410 170 ATLVQRAERNGFKALVLT 187 (239)
Q Consensus 170 ~~li~rAe~aG~~AlvvT 187 (239)
.++.+.|+++|++++++.
T Consensus 85 ~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 85 IELTKRAEKAGADAALVV 102 (284)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 888999999999999888
No 69
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=58.25 E-value=58 Score=28.87 Aligned_cols=133 Identities=16% Similarity=0.184 Sum_probs=68.2
Q ss_pred hhhcCCccchhcHHHHHHHhccccc---ccccccCC--CCCCcc-eeecCcccCcceEeccccchhccCcHHHHHHHHHH
Q 026410 55 DFYAGGAEDEHTLKENVEAFHRITF---RPRILVDV--SRIDLS-TTILDYKISAPIIIAPTALHKLANPEGEVATARAA 128 (239)
Q Consensus 55 ~Y~~gGa~de~T~~~N~~af~ri~l---~PRvL~dv--~~~Dts-t~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA 128 (239)
.-++||.+.-.++..=...++=+.| .|.--... ..+.++ +......+..|++.-++.+. ..+-+..+.++.
T Consensus 5 ~l~SGGKDS~~al~~a~~~~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~---~e~~~e~l~~~l 81 (223)
T TIGR00290 5 ALISGGKDSCLALYHALKEHEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT---EEDEVEELKGIL 81 (223)
T ss_pred EEecCcHHHHHHHHHHHHhCeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCC---ccHHHHHHHHHH
Confidence 4568888888886664443332222 22110000 001111 11223445566655443222 123345677777
Q ss_pred hhcCCceeec-CCCC----CcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 026410 129 ASCNTIMVLS-FTSS----SSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (239)
Q Consensus 129 ~~~gi~~~lS-s~ss----~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g 194 (239)
++.|+-.+++ ...+ .-+|.+++..+=...+.|. .+|+ .+++++..++|++++++.|++..++
T Consensus 82 ~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~PLW-~~~~---~~ll~e~i~~G~~aiIv~v~a~gL~ 148 (223)
T TIGR00290 82 HTLDVEAVVFGAIYSEYQKTRIERVCRELGLKSFAPLW-HRDP---EKLMEEFVEEKFEARIIAVAAEGLD 148 (223)
T ss_pred HHcCCCEEEECCcccHHHHHHHHHHHHhcCCEEecccc-CCCH---HHHHHHHHHcCCeEEEEEEecCCCC
Confidence 7778765554 3333 2345566554311111111 2233 4688888899999999999997664
No 70
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=58.09 E-value=46 Score=28.98 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCceee-cCCCC----CcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 026410 123 ATARAAASCNTIMVL-SFTSS----SSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (239)
Q Consensus 123 alArAA~~~gi~~~l-Ss~ss----~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g 194 (239)
++.+++++ |+..++ |+..+ ..+|.++...+=...+ +.+.++ ..++++.+.+.|++++++.|++..++
T Consensus 78 ~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~~---PLw~~~-~~el~~~~~~~G~~~~i~~v~~~~l~ 149 (218)
T TIGR03679 78 ALKELKRE-GVEGIVTGAIASRYQKSRIERICEELGLKVFA---PLWGRD-QEEYLRELVERGFRFIIVSVSAYGLD 149 (218)
T ss_pred HHHHHHHc-CCCEEEECCcccHhHHHHHHHHHHhCCCeEEe---ehhcCC-HHHHHHHHHHCCCEEEEEEEecCCCC
Confidence 44444443 877544 34333 2345555444311111 112222 24688999999999999999987665
No 71
>PRK08227 autoinducer 2 aldolase; Validated
Probab=57.73 E-value=49 Score=30.09 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=38.7
Q ss_pred HHHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEe---ec-CHHHHHHHHHHHHHcCCcEEEEe
Q 026410 123 ATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYV---FK-KRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 123 alArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~---~~-dr~~~~~li~rAe~aG~~AlvvT 187 (239)
..+|.|.+.|.=++=-.++..++++|.+++|-+ +.+ ++ +.+...++++.|.++|+..+++.
T Consensus 162 ~aaRiaaELGADiVK~~y~~~~f~~vv~a~~vP----VviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~G 226 (264)
T PRK08227 162 LATRIAAEMGAQIIKTYYVEEGFERITAGCPVP----IVIAGGKKLPERDALEMCYQAIDEGASGVDMG 226 (264)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHHHcCCCc----EEEeCCCCCCHHHHHHHHHHHHHcCCceeeec
Confidence 556677777755544444435677887766532 223 12 33446788888989999998875
No 72
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=57.59 E-value=32 Score=31.58 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC-----CcHHHHHhh-------c--CCceeEEEEeecCHHHHHHHHHHHHHcCCc
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS-----SSIEEVAAS-------C--NAVRFYQLYVFKKRDIAATLVQRAERNGFK 182 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss-----~sleeia~~-------~--~~~~wfQLy~~~dr~~~~~li~rAe~aG~~ 182 (239)
+.+.=.++.+||++.+.|.++..... ..++.+... . .-+-..+ -|.....+.+++|.++||.
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lH----LDHg~~~e~i~~ai~~Gft 102 (288)
T TIGR00167 27 NLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALH----LDHGASEEDCAQAVKAGFS 102 (288)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEE----CCCCCCHHHHHHHHHcCCC
Confidence 44555799999999999999976332 245544322 2 1233333 3777778999999999999
Q ss_pred EEEEee
Q 026410 183 ALVLTA 188 (239)
Q Consensus 183 AlvvTV 188 (239)
-++++-
T Consensus 103 SVMiDg 108 (288)
T TIGR00167 103 SVMIDG 108 (288)
T ss_pred EEEecC
Confidence 988753
No 73
>PRK08185 hypothetical protein; Provisional
Probab=56.75 E-value=30 Score=31.78 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHhhcCCceeecCCCCC----cHH------HHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 118 PEGEVATARAAASCNTIMVLSFTSSS----SIE------EVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 118 p~gE~alArAA~~~gi~~~lSs~ss~----sle------eia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
.+.=.++.+||++.+.|.++...... +.+ ++++...-+-... -|.....+.+++|-++||..++++
T Consensus 23 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lH----LDHg~~~e~i~~ai~~Gf~SVM~D 98 (283)
T PRK08185 23 SCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIH----LDHGATIEDVMRAIRCGFTSVMID 98 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEE----CCCCCCHHHHHHHHHcCCCEEEEe
Confidence 34446888888888888888653221 212 1122222222222 366666677788888888775554
No 74
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=56.32 E-value=29 Score=32.29 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----CcHHHH-------HhhcC-CceeEEEEeecCHHHHHHHHHHHHHcCCcEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEV-------AASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~sleei-------a~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~Al 184 (239)
+.+.=.++.+||++.+.|.++..... ..++.+ ++..+ -+-. +--|.....+.+++|.++||.-+
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPVa----lHLDHg~~~e~i~~ai~~GftSV 101 (307)
T PRK05835 26 NFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVA----LHLDHGTTFESCEKAVKAGFTSV 101 (307)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEE----EECCCCCCHHHHHHHHHcCCCEE
Confidence 44555899999999999999975332 233322 22222 2333 33377777888999999999998
Q ss_pred EEee
Q 026410 185 VLTA 188 (239)
Q Consensus 185 vvTV 188 (239)
+++-
T Consensus 102 M~Dg 105 (307)
T PRK05835 102 MIDA 105 (307)
T ss_pred EEeC
Confidence 8763
No 75
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=56.31 E-value=1.1e+02 Score=27.47 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=47.8
Q ss_pred ceEeccccchhccCcHHHHHHHHHHhhcCCceee--cCC---CCCcHHHH-------HhhcCC--ceeEEEEeecCHHHH
Q 026410 104 PIIIAPTALHKLANPEGEVATARAAASCNTIMVL--SFT---SSSSIEEV-------AASCNA--VRFYQLYVFKKRDIA 169 (239)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~l--Ss~---ss~sleei-------a~~~~~--~~wfQLy~~~dr~~~ 169 (239)
|..+.|+--.+-.+.++-...++-..+.|+.-++ ||. .+.|.+|- .++.++ +.+.++- ..+-+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 5566676544445666767888888787775433 332 23455442 222333 2333331 2366778
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 026410 170 ATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 170 ~~li~rAe~aG~~AlvvTV 188 (239)
.++.+.|+++|+++++++-
T Consensus 86 i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHhhcCceEEEEec
Confidence 8999999999999999875
No 76
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=55.34 E-value=1.2e+02 Score=26.91 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=50.9
Q ss_pred ceEeccccchhccCcHHHHHHHHHHhhcCCcee--ecC---CCCCcHHHH-------HhhcCC--ceeEEEEeecCHHHH
Q 026410 104 PIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSF---TSSSSIEEV-------AASCNA--VRFYQLYVFKKRDIA 169 (239)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~--lSs---~ss~sleei-------a~~~~~--~~wfQLy~~~dr~~~ 169 (239)
|..+.|+.-.+-.+.++-...++-..+.|+--+ .|| +.+.|.||- .+..++ +.+.++- ..+-+.+
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHHH
Confidence 566777755555567777788888777776443 333 234455542 222222 2233332 1244557
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 026410 170 ATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 170 ~~li~rAe~aG~~AlvvTV 188 (239)
.++.+.|+++|++++++.-
T Consensus 82 i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 82 IELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 8888999999999999954
No 77
>PLN02826 dihydroorotate dehydrogenase
Probab=55.22 E-value=22 Score=34.27 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=32.7
Q ss_pred cchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEecc
Q 026410 62 EDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAP 109 (239)
Q Consensus 62 ~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP 109 (239)
+-|..++--..+++.. +.|+. ....+++++++++|.+++-||++|.
T Consensus 46 dpE~aH~~~~~~l~~~-~~~~~-~~~~~~~L~~~~~Gl~f~NPvglAA 91 (409)
T PLN02826 46 DPETAHSLAISAAARG-LVPRE-KRPDPSVLGVEVWGRTFSNPIGLAA 91 (409)
T ss_pred CHHHHHHHHHHHHHhh-ccccc-ccCCCCCcceEECCEECCCCCEECc
Confidence 5566666667777643 33422 2245678999999999999999985
No 78
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=55.13 E-value=88 Score=29.03 Aligned_cols=92 Identities=14% Similarity=0.009 Sum_probs=55.6
Q ss_pred CcccCcceEeccccchhccCcHHHHHHHHHHhhcCC-ceeecCC-CC-----CcHHHHHhhc--CCceeEEEEeecCHHH
Q 026410 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNT-IMVLSFT-SS-----SSIEEVAASC--NAVRFYQLYVFKKRDI 168 (239)
Q Consensus 98 G~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi-~~~lSs~-ss-----~sleeia~~~--~~~~wfQLy~~~dr~~ 168 (239)
+.....|+++|||++.. +...=+-|+..|. -.+.+-+ +. ....+..... +.+...||. -.|.+.
T Consensus 6 ~~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~ 78 (333)
T PRK11815 6 SKLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPAD 78 (333)
T ss_pred ccCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHH
Confidence 34567799999987653 2222333555554 2333222 11 1122222222 256788985 456777
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCCCCCc
Q 026410 169 AATLVQRAERNGFKALVLTADTPRLGRR 196 (239)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTVD~p~~g~R 196 (239)
..+..++++++||++|=|....|..-.|
T Consensus 79 ~~~aA~~~~~~g~d~IdlN~gCP~~~v~ 106 (333)
T PRK11815 79 LAEAAKLAEDWGYDEINLNVGCPSDRVQ 106 (333)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCHHHcc
Confidence 7788899999999999999888876443
No 79
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=55.06 E-value=1.2e+02 Score=28.49 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=73.1
Q ss_pred hhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchhccC--cHHHHHHHHHH
Q 026410 51 KMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLAN--PEGEVATARAA 128 (239)
Q Consensus 51 ~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~h--p~gE~alArAA 128 (239)
......+.++.-..-.++++...+....-+|.+. ..||... .|++...+.| ...+....-.+
T Consensus 37 aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~----------~~f~~~~------~~v~~~~l~~~~~~~~~~~~~ii 100 (336)
T COG2070 37 AGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVA----------NNFGSAP------APVNVNILVARRNAAEAGVDAII 100 (336)
T ss_pred cCCccccccccCCHHHHHHHHHHHHHhcCCcchh----------ccccccc------ccchhheecccccchHHhhhhHH
Confidence 3444566666666666888887777766666442 2333322 5565555555 34556666667
Q ss_pred hhcCCceeecCCCCCcHHHHHhhc-CCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 129 ASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 129 ~~~gi~~~lSs~ss~sleeia~~~-~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
..+|++.++.++...+-+.|...- -+...+... .+.+..++++++|+.++|.-
T Consensus 101 ~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v------~~~~~A~~~~~~G~d~vI~~ 154 (336)
T COG2070 101 EGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSV------ITVREALKAERAGADAVIAQ 154 (336)
T ss_pred hcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEe------CCHHHHHHHHhCCCCEEEec
Confidence 777999999998865566665432 144444444 24577899999999988764
No 80
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=55.02 E-value=1.1e+02 Score=27.79 Aligned_cols=85 Identities=15% Similarity=0.004 Sum_probs=52.5
Q ss_pred cceEeccccchhccCcHHHHHHHHHHhhcCCce--eecC---CCCCcHHHHH-------hhcCC--ceeEEEEeecCHHH
Q 026410 103 APIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (239)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~--~lSs---~ss~sleeia-------~~~~~--~~wfQLy~~~dr~~ 168 (239)
.|.++.|+--.+-.+.++=..+++-..+.|+-- +.|| +.+.|.||-. +...+ +-+.++- ..+-+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~-~~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG-ALNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC-cchHHH
Confidence 467788875555556666677777777777643 3344 3445666532 22222 2233332 134455
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 026410 169 AATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTV 188 (239)
+.++.+.|+++|++++++.-
T Consensus 84 ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 67889999999999999886
No 81
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=54.66 E-value=17 Score=25.22 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCCCC
Q 026410 169 AATLVQRAERNGFKALVLTADTPRLG 194 (239)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTVD~p~~g 194 (239)
.++++++|++.|++++++|==....|
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~ 42 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFG 42 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccC
Confidence 57899999999999999985544443
No 82
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=54.64 E-value=17 Score=27.07 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=21.0
Q ss_pred CH-HHHHHHHHHHHHcCCcEEE-EeecCC
Q 026410 165 KR-DIAATLVQRAERNGFKALV-LTADTP 191 (239)
Q Consensus 165 dr-~~~~~li~rAe~aG~~Alv-vTVD~p 191 (239)
|. +..++|.++|++.|+.|++ +.+|..
T Consensus 26 d~d~Al~eM~e~A~~lGAnAVVGvr~d~s 54 (74)
T TIGR03884 26 NVDEIVENLREKVKAKGGMGLIAFRITCA 54 (74)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEEEEcC
Confidence 54 4458999999999999975 666665
No 83
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=54.11 E-value=32 Score=31.62 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHhhcCCceeecCCCC----CcHHHHHh-------hcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q 026410 118 PEGEVATARAAASCNTIMVLSFTSS----SSIEEVAA-------SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (239)
Q Consensus 118 p~gE~alArAA~~~gi~~~lSs~ss----~sleeia~-------~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alvv 186 (239)
.+.=.++.+||++.+.|.++..... ..++.+.. ...-+-... -|.....+.+++|-++||..+++
T Consensus 28 ~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lH----LDH~~~~e~i~~Ai~~GftSVM~ 103 (283)
T PRK07998 28 LETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLH----LDHGKTFEDVKQAVRAGFTSVMI 103 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEE----CcCCCCHHHHHHHHHcCCCEEEE
Confidence 3445789999999999999976322 23333322 222222223 36666678888999999999888
Q ss_pred eecCCCC
Q 026410 187 TADTPRL 193 (239)
Q Consensus 187 TVD~p~~ 193 (239)
|....
T Consensus 104 --DgS~l 108 (283)
T PRK07998 104 --DGAAL 108 (283)
T ss_pred --eCCCC
Confidence 55443
No 84
>PRK06801 hypothetical protein; Provisional
Probab=54.11 E-value=34 Score=31.43 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~sleeia-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (239)
+.+-=.++.+||++.+.|.++....+ .+++.+. +...-+ +.+--|.....+.+++|-++||..++
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vp----V~lHlDH~~~~e~i~~Ai~~GftSVm 102 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIP----VVLNLDHGLHFEAVVRALRLGFSSVM 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCC----EEEECCCCCCHHHHHHHHHhCCcEEE
Confidence 34455788888888888888865322 2333332 222222 22233666666778888888888877
Q ss_pred EeecCCCCCCc
Q 026410 186 LTADTPRLGRR 196 (239)
Q Consensus 186 vTVD~p~~g~R 196 (239)
+ |......+
T Consensus 103 ~--D~S~l~~e 111 (286)
T PRK06801 103 F--DGSTLEYE 111 (286)
T ss_pred E--cCCCCCHH
Confidence 7 54444433
No 85
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=54.10 E-value=57 Score=28.96 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=47.1
Q ss_pred hhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHh-hcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q 026410 113 HKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA-SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (239)
Q Consensus 113 ~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~-~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD 189 (239)
.++..|.-=-++.|.|.+.|+.-+...........+.. +.+...|..++...|-+ +.++..++.|+.-+..+..
T Consensus 25 d~V~~p~NlGAIiRta~AfGv~~V~~v~~~~~~~~~~~~s~Ga~~wv~i~~~~~~~---~~i~~lk~~g~~i~at~~~ 99 (229)
T PRK11081 25 EQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMGSTAAGSNSWVQVKTHRTIG---DAVAHLKGQGMQILATHLS 99 (229)
T ss_pred eCCCCcchHHHHHHHHHHhCCCeEEEecCCCccchhhhhcCCchheEEEEEeCCHH---HHHHHHHhCCCEEEEEeCC
Confidence 34434433358999999999976633333333333333 33667899888766544 5666777889988887754
No 86
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=53.83 E-value=90 Score=28.23 Aligned_cols=97 Identities=9% Similarity=0.012 Sum_probs=59.9
Q ss_pred cceEeccccchhccCcHHHHHHHHHHhhcCCcee--ecCC---CCCcHHHHH-------hhcCC--ceeEEEEeecCHHH
Q 026410 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (239)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~--lSs~---ss~sleeia-------~~~~~--~~wfQLy~~~dr~~ 168 (239)
.|.++.|+--.+-.+.++-..+++-..+.|+--+ .||. .+.|.||-. +...+ +.+.++- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 3667778754554567777888888888886543 3442 344666522 22222 4456653 25666
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCCCCCchhHhhc
Q 026410 169 AATLVQRAERNGFKALVLTADTPRLGRREADIKN 202 (239)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTVD~p~~g~Re~d~r~ 202 (239)
+.++.+.|+++|++++++.- .......+..+..
T Consensus 88 ai~~a~~a~~~Gadav~~~p-P~y~~~s~~~i~~ 120 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP-PYLINGEQEGLYA 120 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC-CCCCCCCHHHHHH
Confidence 78889999999999998854 3333334444443
No 87
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=53.70 E-value=1.2e+02 Score=28.76 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=65.9
Q ss_pred hcccccccccccCCCCCCcce----eecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCcee-----ecCCCCCc
Q 026410 74 FHRITFRPRILVDVSRIDLST----TILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMV-----LSFTSSSS 144 (239)
Q Consensus 74 f~ri~l~PRvL~dv~~~Dtst----~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~-----lSs~ss~s 144 (239)
+.+++|-|..+.....|...+ +++|.. .-|++.+-+=-.++ .++.-..++......|+-++ ++++...+
T Consensus 94 L~D~~~p~~~~~~f~GP~~Gi~g~R~~lgv~-~rPl~~tiiKP~GL-~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p 171 (364)
T cd08210 94 LVDFELPPSLLRRFPGPRFGIAGLRALLGIP-ERPLLCSALKPQGL-SAAELAELAYAFALGGIDIIKDDHGLADQPFAP 171 (364)
T ss_pred EEEecCCHHHHhcCCCCCCChHHHHHHhCCC-CCceEEEEeccccC-CHHHHHHHHHHHHhcCCCeeecCccccCccCCC
Confidence 445566666666555554332 244433 44554432211244 35555677777788898776 66677778
Q ss_pred HHHHHh--------hc---CCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 026410 145 IEEVAA--------SC---NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (239)
Q Consensus 145 leeia~--------~~---~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (239)
+||-.+ +. ++...+=.-+-.+.+...+..++|+++|+.+++|.+-+..
T Consensus 172 ~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv~~~~~G 230 (364)
T cd08210 172 FEERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVLIAPGLTG 230 (364)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEEeecccch
Confidence 876321 11 2322222222345566667777778999998887665543
No 88
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=53.19 E-value=37 Score=29.14 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=49.5
Q ss_pred ecCcccCcceEeccccchhccCcHHH----HHHHHHHhhcCCceee-cCCCC----CcHHHHHhhcCCceeEEEEeecCH
Q 026410 96 ILDYKISAPIIIAPTALHKLANPEGE----VATARAAASCNTIMVL-SFTSS----SSIEEVAASCNAVRFYQLYVFKKR 166 (239)
Q Consensus 96 llG~~~s~Pi~iaP~g~~~l~hp~gE----~alArAA~~~gi~~~l-Ss~ss----~sleeia~~~~~~~wfQLy~~~dr 166 (239)
.....+..|+.+-.+... .++-. ..+-+.+++ |+..++ |+..+ .-+|.++...+=...+.| |.+|+
T Consensus 52 ~~A~~lgipl~~i~~~~~---~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PL-W~~~~ 126 (194)
T cd01994 52 LQAEAMGIPLIRIEISGE---EEDEVEDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERLGLEPLAPL-WGRDQ 126 (194)
T ss_pred HHHHHcCCcEEEEeCCCC---chHHHHHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHcCCEEEecc-cCCCH
Confidence 344556677776665321 22222 233333444 676444 34333 244566665541111111 12233
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 026410 167 DIAATLVQRAERNGFKALVLTADTPRLG 194 (239)
Q Consensus 167 ~~~~~li~rAe~aG~~AlvvTVD~p~~g 194 (239)
+++++...+.|++++++.|++..++
T Consensus 127 ---~~ll~e~~~~g~~~~iv~v~~~~L~ 151 (194)
T cd01994 127 ---EELLREMIEAGFKAIIIKVAAEGLD 151 (194)
T ss_pred ---HHHHHHHHHcCCeEEEEEeccCCCC
Confidence 4688888899999999999998665
No 89
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=50.50 E-value=42 Score=30.64 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=33.6
Q ss_pred HHHHHHhhcCCceeecCCCCCcHHHHHhhc-CCceeEEEEeec-----CHHHHHHHHHHHHHcCCc
Q 026410 123 ATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFK-----KRDIAATLVQRAERNGFK 182 (239)
Q Consensus 123 alArAA~~~gi~~~lSs~ss~sleeia~~~-~~~~wfQLy~~~-----dr~~~~~li~rAe~aG~~ 182 (239)
.+..+|+++.+|.++----..+++.+..+. .|..++|+=-.. +-+.++++++.+.+.|+.
T Consensus 65 ~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 65 LMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 334456667777777543335666666554 356677764321 223445666666666654
No 90
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=50.42 E-value=1.5e+02 Score=27.37 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=26.3
Q ss_pred eecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHH
Q 026410 95 TILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEE 147 (239)
Q Consensus 95 ~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~slee 147 (239)
++|| +..||+-+||++ ...+ .++-|..++|-.-+++... .+.|+
T Consensus 6 ~~lg--i~~PIiqapM~~--is~~----~LaaAVs~aGglG~l~~~~-~~~~~ 49 (330)
T PF03060_consen 6 ELLG--IKYPIIQAPMGG--ISTP----ELAAAVSNAGGLGFLGAGG-LTPEQ 49 (330)
T ss_dssp HHHT---SSSEEE---TT--TSSH----HHHHHHHHTTSBEEEECTT-SSHHH
T ss_pred HHhC--CCcCEEcCCCCC--CChH----HHHHHHHhCCCEeeccccc-cChHH
Confidence 3444 456999999987 3333 6777778888888888543 34443
No 91
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=49.55 E-value=43 Score=31.79 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----CcHHHHH-------hhcC-CceeEEEEeecCHHHHHHHHHHHHHcCCcEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~sleeia-------~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~Al 184 (239)
+.+-=.++.+||++.+.|.++....+ .+++.+. +..+ -+-... -|.....+.+++|.++||.-+
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValH----LDHg~~~e~i~~Ai~~GFtSV 100 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMH----QDHGNSPATCQRAIQLGFTSV 100 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEE----CCCCCCHHHHHHHHHcCCCEE
Confidence 44556899999999999999975432 2333322 2222 233333 377777788999999999998
Q ss_pred EEee
Q 026410 185 VLTA 188 (239)
Q Consensus 185 vvTV 188 (239)
+++-
T Consensus 101 MiDg 104 (347)
T TIGR01521 101 MMDG 104 (347)
T ss_pred eecC
Confidence 8763
No 92
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=48.76 E-value=25 Score=29.90 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 026410 166 RDIAATLVQRAERNGFKALVLTADTPRLGRRE 197 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re 197 (239)
.+...+.+++|++.++++|+|.+|+|..--..
T Consensus 15 ~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~ 46 (172)
T cd07015 15 YDQFDRYITIAEQDNAEAIIIELDTPGGRADA 46 (172)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEECCCCCHHH
Confidence 45678889999999999999999999875544
No 93
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=48.74 E-value=53 Score=30.92 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhh
Q 026410 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (239)
Q Consensus 118 p~gE~alArAA~~~gi~~~lSs~ss~sleeia~~ 151 (239)
.+|-..+.+++++.|++++..-+...+++.+.+.
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~ 176 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY 176 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh
Confidence 3455678888999999999988877777776554
No 94
>PLN02417 dihydrodipicolinate synthase
Probab=48.61 E-value=1.3e+02 Score=27.13 Aligned_cols=84 Identities=10% Similarity=-0.102 Sum_probs=47.3
Q ss_pred ceEeccccchhccCcHHHHHHHHHHhhcCCcee--ecC---CCCCcHHHHH-------hhcCC--ceeEEEEeecCHHHH
Q 026410 104 PIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (239)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~--lSs---~ss~sleeia-------~~~~~--~~wfQLy~~~dr~~~ 169 (239)
|-++.|+.-.+-.+.++-..+++-..+.|+.-+ .|| +.+.|.||-. +..++ +...++- ..+-..+
T Consensus 7 ~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~-~~~t~~~ 85 (280)
T PLN02417 7 TAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG-SNSTREA 85 (280)
T ss_pred eeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC-CccHHHH
Confidence 455667654444566666677777666776544 333 2334555422 22222 1122221 1245566
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 026410 170 ATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 170 ~~li~rAe~aG~~AlvvTV 188 (239)
.++.+.|+++|++++++.-
T Consensus 86 i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 86 IHATEQGFAVGMHAALHIN 104 (280)
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 7888888899999888854
No 95
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=48.41 E-value=1.7e+02 Score=26.00 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=46.4
Q ss_pred CcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCC-------------CcH----HHHHhhcCCceeEEEEeec
Q 026410 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS-------------SSI----EEVAASCNAVRFYQLYVFK 164 (239)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss-------------~sl----eeia~~~~~~~wfQLy~~~ 164 (239)
..||+++ +++. .++.-...++.+.++|+-++-=+.+. ..+ ++|++..+-+.+.-+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4576664 3333 23444567777777776544222110 112 2333333223344443344
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 026410 165 KRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 165 dr~~~~~li~rAe~aG~~AlvvT 187 (239)
+.+...++++.++++|+++|+++
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE
Confidence 55678899999999999999987
No 96
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=47.87 E-value=27 Score=29.65 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 026410 166 RDIAATLVQRAERNGFKALVLTADTPRLGRRE 197 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re 197 (239)
.+.+.+.+++|++.++++|+|.+|+|..--..
T Consensus 15 ~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~ 46 (178)
T cd07021 15 AAFVERALKEAKEEGADAVVLDIDTPGGRVDS 46 (178)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEECcCCCHHH
Confidence 45567889999999999999999999865433
No 97
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=46.60 E-value=73 Score=27.29 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCH---HH----HHHHHHHHHHcCCcEEEEeecCCC
Q 026410 120 GEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKR---DI----AATLVQRAERNGFKALVLTADTPR 192 (239)
Q Consensus 120 gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr---~~----~~~li~rAe~aG~~AlvvTVD~p~ 192 (239)
--..+|+++.+.|+..+... +..-++++++...-+.-..+| +|- .+ ..+.++.|.++|+++|++ |.+.
T Consensus 24 ~~~~~a~a~~~~G~~~~~~~-~~~~i~~i~~~~~~Pil~~~~--~d~~~~~~~~~~~~~~v~~a~~aGad~I~~--d~~~ 98 (221)
T PRK01130 24 IMAAMALAAVQGGAVGIRAN-GVEDIKAIRAVVDVPIIGIIK--RDYPDSEVYITPTLKEVDALAAAGADIIAL--DATL 98 (221)
T ss_pred HHHHHHHHHHHCCCeEEEcC-CHHHHHHHHHhCCCCEEEEEe--cCCCCCCceECCCHHHHHHHHHcCCCEEEE--eCCC
Confidence 34799999999998655532 222233443333222211223 110 01 235689999999995444 5543
No 98
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=46.43 E-value=52 Score=31.23 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=45.6
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~sleeia-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (239)
+.+.=.++.+||++.+.|.++..... .+++.+. +..+.+ .+.+--|.....+.+++|.++||.-++
T Consensus 27 n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~V---PVaLHLDHg~~~e~i~~Ai~~GFtSVM 103 (347)
T PRK13399 27 NMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDI---PICLHQDHGNSPATCQSAIRSGFTSVM 103 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCC---cEEEECCCCCCHHHHHHHHhcCCCEEE
Confidence 44556899999999999999975332 2333322 122211 222333777677889999999999988
Q ss_pred Eeec
Q 026410 186 LTAD 189 (239)
Q Consensus 186 vTVD 189 (239)
++--
T Consensus 104 iDgS 107 (347)
T PRK13399 104 MDGS 107 (347)
T ss_pred EeCC
Confidence 7643
No 99
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=45.54 E-value=1.6e+02 Score=26.44 Aligned_cols=85 Identities=15% Similarity=0.039 Sum_probs=50.5
Q ss_pred cceEeccccchhccCcHHHHHHHHHHhhcCCcee--ecCC---CCCcHHHH-------HhhcCC--ceeEEEEeecCHHH
Q 026410 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSFT---SSSSIEEV-------AASCNA--VRFYQLYVFKKRDI 168 (239)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~--lSs~---ss~sleei-------a~~~~~--~~wfQLy~~~dr~~ 168 (239)
.|.++.|+--.+-.+.++-..+++-..+.|+--+ .||. .+.|.||- .+...+ +.+.++- ..+-+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 3566778754555566666777777767775443 3332 23455542 222222 3344432 224556
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 026410 169 AATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTV 188 (239)
+.++.+.|+++|+++++++-
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 77888999999999999975
No 100
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=45.09 E-value=52 Score=29.56 Aligned_cols=33 Identities=9% Similarity=-0.079 Sum_probs=25.1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 026410 164 KKRDIAATLVQRAERNGFKALVLTADTPRLGRRE 197 (239)
Q Consensus 164 ~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re 197 (239)
-+.+...+++++++++|++.|. =+|+.....-+
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~-l~DT~G~~~P~ 167 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFY-IVDSFGSMYPE 167 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEE-EecCCCCCCHH
Confidence 3678889999999999998754 46887765544
No 101
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=44.72 E-value=2.2e+02 Score=25.60 Aligned_cols=83 Identities=16% Similarity=0.046 Sum_probs=46.2
Q ss_pred ceEeccccchhccCcHHHHHHHHHHhhc-CCce--eecC---CCCCcHHHHH-------hhcCCceeEEEEe---ecCHH
Q 026410 104 PIIIAPTALHKLANPEGEVATARAAASC-NTIM--VLSF---TSSSSIEEVA-------ASCNAVRFYQLYV---FKKRD 167 (239)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~alArAA~~~-gi~~--~lSs---~ss~sleeia-------~~~~~~~wfQLy~---~~dr~ 167 (239)
|..+.|+--.+-.+.++-..+++-..+. |+-- +.|| +.+.+.||-. ++..+. +.++. ..+-+
T Consensus 6 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~--~~viagv~~~~~~ 83 (288)
T cd00954 6 AALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGK--VTLIAHVGSLNLK 83 (288)
T ss_pred eceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCC--CeEEeccCCCCHH
Confidence 5566676544445566666666666666 6443 3333 2334555421 222221 12333 23455
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 026410 168 IAATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTV 188 (239)
.+.++.+.|+++|++++++.-
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 84 ESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEeC
Confidence 667888888899999988763
No 102
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=44.60 E-value=68 Score=29.49 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC-----CcHHHH-------HhhcC--CceeEEEEeecCHHHHHHHHHHHHHcCCc
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS-----SSIEEV-------AASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFK 182 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss-----~sleei-------a~~~~--~~~wfQLy~~~dr~~~~~li~rAe~aG~~ 182 (239)
+.+.=.++.+||++.+.|.++..... .+++.+ ++... -+-. +--|.....+.+.+|-++||.
T Consensus 27 n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~----lHLDHg~~~e~i~~ai~~Gft 102 (285)
T PRK07709 27 NLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVA----IHLDHGSSFEKCKEAIDAGFT 102 (285)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEE----EECCCCCCHHHHHHHHHcCCC
Confidence 44555789999999999999976322 233332 22221 1323 333666677888899999999
Q ss_pred EEEEee
Q 026410 183 ALVLTA 188 (239)
Q Consensus 183 AlvvTV 188 (239)
-++++-
T Consensus 103 SVM~Dg 108 (285)
T PRK07709 103 SVMIDA 108 (285)
T ss_pred EEEEeC
Confidence 888763
No 103
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=44.42 E-value=7.6 Score=36.69 Aligned_cols=45 Identities=29% Similarity=0.271 Sum_probs=32.9
Q ss_pred chhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEecc
Q 026410 63 DEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAP 109 (239)
Q Consensus 63 de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP 109 (239)
-|.+++--.. +..|.|.||-=.. .+..+.+++||++++-||++|.
T Consensus 57 ~E~sHrlAv~-aas~gl~Pr~~~~-d~~~L~~k~~g~~f~NPiglAA 101 (398)
T KOG1436|consen 57 PEFSHRLAVL-AASWGLLPRDRVA-DDASLETKVLGRKFSNPIGLAA 101 (398)
T ss_pred HHHHHHHHHH-HHHhCCCchhccC-CccchhhHHhhhhccCchhhhh
Confidence 3555554444 5678999987443 3456888999999999999975
No 104
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=44.36 E-value=61 Score=29.81 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----Cc-HHHHH-------hhcC--CceeEEEEeecCHHHHHHHHHHHHHcCCc
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SS-IEEVA-------ASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFK 182 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~s-leeia-------~~~~--~~~wfQLy~~~dr~~~~~li~rAe~aG~~ 182 (239)
+.+.=.++.+||++.+.|.++..... .+ ++.+. +... -+-... -|.....+.+++|-++||.
T Consensus 27 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lH----LDHg~~~e~i~~ai~~Gft 102 (286)
T PRK08610 27 NLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIH----LDHGSSFEKCKEAIDAGFT 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEE----CCCCCCHHHHHHHHHcCCC
Confidence 44555799999999999999976432 12 44332 1222 132333 3666667888999999999
Q ss_pred EEEEe
Q 026410 183 ALVLT 187 (239)
Q Consensus 183 AlvvT 187 (239)
-++++
T Consensus 103 SVM~D 107 (286)
T PRK08610 103 SVMID 107 (286)
T ss_pred EEEEe
Confidence 98876
No 105
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=44.33 E-value=28 Score=31.26 Aligned_cols=33 Identities=21% Similarity=0.093 Sum_probs=29.0
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 026410 162 VFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (239)
Q Consensus 162 ~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g 194 (239)
++.+|+...+++++..++|+++|++++.-...+
T Consensus 59 ~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f~~~~ 91 (310)
T PF05226_consen 59 WPWPRSVYARLLDRLAAAGAKAIGFDILFDEPD 91 (310)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEeeecCCC
Confidence 467899999999999999999999999876663
No 106
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=43.92 E-value=80 Score=29.65 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHhhcCCceeecCCCCC---c-HHHHHhhcC--CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 118 PEGEVATARAAASCNTIMVLSFTSSS---S-IEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 118 p~gE~alArAA~~~gi~~~lSs~ss~---s-leeia~~~~--~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
-.|+.|+|+||.++|+-++.+ +..+ + +|.+++..+ +..|+| ..|.-.....+-=|--+|++++..|
T Consensus 7 ~~GNeAiA~ga~~ag~~~~a~-YPiTPsTeI~e~la~~~~~~~~~~vq---~E~E~aA~~~a~GAs~aG~Ra~taT 78 (352)
T PRK07119 7 MKGNEAIAEAAIRAGCRCYFG-YPITPQSEIPEYMSRRLPEVGGVFVQ---AESEVAAINMVYGAAATGKRVMTSS 78 (352)
T ss_pred ehHHHHHHHHHHHhCCCEEEE-eCCCCchHHHHHHHHHHHHhCCEEEe---eCcHHHHHHHHHHHHhhCCCEEeec
Confidence 379999999999999987765 3222 2 244444332 335666 4566666788888889999999999
No 107
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=43.66 E-value=74 Score=27.89 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHc-CCcEEEEeecCCCCCC
Q 026410 168 IAATLVQRAERN-GFKALVLTADTPRLGR 195 (239)
Q Consensus 168 ~~~~li~rAe~a-G~~AlvvTVD~p~~g~ 195 (239)
.+.++++++.++ |.+-.+-|||.+..-+
T Consensus 196 ~~~~~v~~~~~~~G~~v~vWTVnd~~~~~ 224 (237)
T cd08585 196 LPNPFVTLARALLGMPVIVWTVRTEEDIA 224 (237)
T ss_pred CcCHHHHHHHHhcCCcEEEEeCCCHHHHH
Confidence 446789999999 9999999999765433
No 108
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=43.63 E-value=1.5e+02 Score=23.97 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcCC--c-eeEEEEeec---CHHHHHHHHHHHHHcCCcEEEEeecC
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNA--V-RFYQLYVFK---KRDIAATLVQRAERNGFKALVLTADT 190 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~~--~-~wfQLy~~~---dr~~~~~li~rAe~aG~~AlvvTVD~ 190 (239)
..+.-..+++.+.+.|+..++-.. .-++.+.+..++ . ...++-... .-+.+.+++++|+++|++++.++...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH
Confidence 445557778888878876554333 234545444432 2 233332211 03566788899999999999987654
No 109
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=43.21 E-value=61 Score=30.78 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----CcHHHHH-------hhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~sleeia-------~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (239)
+.+-=.++.+||++.+.|.++....+ ..++.+. +..+.+ .+.+--|.....+.+++|.++||..++
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~V---PValHLDHg~~~e~i~~ai~~GftSVM 103 (347)
T PRK09196 27 NLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHI---PVVMHQDHGNSPATCQRAIQLGFTSVM 103 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCC---cEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 44555799999999999999975332 2233322 112211 122333666677889999999999988
Q ss_pred Eee
Q 026410 186 LTA 188 (239)
Q Consensus 186 vTV 188 (239)
++-
T Consensus 104 iDg 106 (347)
T PRK09196 104 MDG 106 (347)
T ss_pred ecC
Confidence 763
No 110
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.93 E-value=85 Score=28.42 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhh
Q 026410 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (239)
Q Consensus 118 p~gE~alArAA~~~gi~~~lSs~ss~sleeia~~ 151 (239)
.+|-..+.+.+++.|++++..-+...+++.+.+.
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~ 110 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY 110 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh
Confidence 5666788888899999988877777777666543
No 111
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=42.86 E-value=82 Score=28.36 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=40.5
Q ss_pred CCCCCcHHHHHhhcCC-----------ceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 139 FTSSSSIEEVAASCNA-----------VRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 139 s~ss~sleeia~~~~~-----------~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
......++++.+..|+ ..|+.+...-+++.+.+++.+.+++|++.|+|+
T Consensus 221 ~~~~~~~~~~~~~~p~~~~ptv~~~~~~~~~av~~~~~~~~~~~~~~~l~~~ga~~i~~~ 280 (287)
T PRK00489 221 NAPKEKLDAVIALLPGLESPTVSPLGDEGWVAVHAVVPEDLVWELMDKLKALGARGILVL 280 (287)
T ss_pred eCCHHHHHHHHHhCCCCCCCcccCCCCCCeEEEEEEECHHHHHHHHHHHHHcCCCeEEEe
Confidence 4566678888776431 269999998899999999999999999999885
No 112
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=42.09 E-value=1.8e+02 Score=26.46 Aligned_cols=90 Identities=18% Similarity=0.127 Sum_probs=0.0
Q ss_pred eeecCcccCcceEeccccchhccCc-HHHHHHHHHHhhcCCceeecCCCCCc----------------------------
Q 026410 94 TTILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNTIMVLSFTSSSS---------------------------- 144 (239)
Q Consensus 94 t~llG~~~s~Pi~iaP~g~~~l~hp-~gE~alArAA~~~gi~~~lSs~ss~s---------------------------- 144 (239)
++++|.+++-||++|. .+ +......+.+.+.|..+++--.-+..
T Consensus 1 ~~~~Gl~l~nPi~~As-------g~~~~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~ 73 (294)
T cd04741 1 VTPPGLTISPPLMNAA-------GPWCTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGL 73 (294)
T ss_pred CccCCeeCCCCCEECC-------CCCCCCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCH
Q ss_pred ---HHHHHhh------cCCceeEEEEeecCHHHHHHHHHHHHHc---CCcEEEEeecCCC
Q 026410 145 ---IEEVAAS------CNAVRFYQLYVFKKRDIAATLVQRAERN---GFKALVLTADTPR 192 (239)
Q Consensus 145 ---leeia~~------~~~~~wfQLy~~~dr~~~~~li~rAe~a---G~~AlvvTVD~p~ 192 (239)
++++.+. .+.+...|+.-. .+...+.+++.++. |+++|-|.+=+|.
T Consensus 74 ~~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn 131 (294)
T cd04741 74 DYYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPN 131 (294)
T ss_pred HHHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCC
No 113
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=42.06 E-value=66 Score=30.49 Aligned_cols=69 Identities=9% Similarity=0.078 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcC--Cce----------------eEEEEeec----CHHHHHHHHHHH
Q 026410 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN--AVR----------------FYQLYVFK----KRDIAATLVQRA 176 (239)
Q Consensus 119 ~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~--~~~----------------wfQLy~~~----dr~~~~~li~rA 176 (239)
+|-..+.+.|++.|++++.+-+...+++.+.+..+ .+. =-.+.+.+ +.+....-++..
T Consensus 169 e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i 248 (360)
T PRK12595 169 EGLKILKQVADEYGLAVISEIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYI 248 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 56678888999999999988777777776654422 000 00122222 344455556666
Q ss_pred HHcCCcEEEEe
Q 026410 177 ERNGFKALVLT 187 (239)
Q Consensus 177 e~aG~~AlvvT 187 (239)
...|.+-|+|+
T Consensus 249 ~~~Gn~~i~L~ 259 (360)
T PRK12595 249 MSQGNGQIILC 259 (360)
T ss_pred HHCCCCCEEEE
Confidence 67888766665
No 114
>PRK12855 hypothetical protein; Provisional
Probab=41.83 E-value=31 Score=27.06 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCC
Q 026410 166 RDIAATLVQRAERNGFKALV-LTADTPR 192 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~ 192 (239)
++..++++++|++.|+.|++ |.+|...
T Consensus 59 ~~A~~rm~~~A~~lGAnAVVgvr~d~~~ 86 (103)
T PRK12855 59 DIAMEEMKTLARQKNANAIVGIDVDYEV 86 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhH
Confidence 34558999999999999975 6666544
No 115
>PLN02775 Probable dihydrodipicolinate reductase
Probab=41.82 E-value=1.3e+02 Score=27.88 Aligned_cols=74 Identities=11% Similarity=0.202 Sum_probs=50.1
Q ss_pred hcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceE--------e------ccc-cchhccCcHHHHHHHHHHh
Q 026410 65 HTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPII--------I------APT-ALHKLANPEGEVATARAAA 129 (239)
Q Consensus 65 ~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~--------i------aP~-g~~~l~hp~gE~alArAA~ 129 (239)
.+..+-..+ +.+.|.+-+.+.-..-|..+++.|. ..|+. + .|- -.-.+.||+.=...++.|.
T Consensus 25 ~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~--~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~ 101 (286)
T PLN02775 25 HAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCGV--EVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYC 101 (286)
T ss_pred HHHHHHHhc-CCCEEEEEeccccccccccceeccc--eeeeecCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHH
Confidence 445555566 7888888776644444555677775 44444 0 132 2345678888889999999
Q ss_pred hcCCceeecCCC
Q 026410 130 SCNTIMVLSFTS 141 (239)
Q Consensus 130 ~~gi~~~lSs~s 141 (239)
+.|++.+++|-.
T Consensus 102 ~~g~~~VvGTTG 113 (286)
T PLN02775 102 KNGLPFVMGTTG 113 (286)
T ss_pred HCCCCEEEECCC
Confidence 999999999854
No 116
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=41.14 E-value=1.1e+02 Score=25.24 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=32.0
Q ss_pred eEEEEeecCHHHHHHHHHHHHHcCCcEEEEe-ecCCCCCCch
Q 026410 157 FYQLYVFKKRDIAATLVQRAERNGFKALVLT-ADTPRLGRRE 197 (239)
Q Consensus 157 wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT-VD~p~~g~Re 197 (239)
..+.+...+.+.+.++++++.+.|..++|+- .|+++.+.|.
T Consensus 125 ~~~~~~~~~~~~i~~~~~~~~~~g~EGlv~K~~ds~Y~~gR~ 166 (174)
T cd07896 125 IVPQIPVKSNEALDQYLDEVVAAGGEGLMLRRPDAPYETGRS 166 (174)
T ss_pred EEeeeeeCCHHHHHHHHHHHHhcCCCeEEEecCCCcccCCcC
Confidence 3344445677888999999999999999999 5888765554
No 117
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.87 E-value=85 Score=28.39 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=46.2
Q ss_pred cccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEE---------------------EEeec---
Q 026410 109 PTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQ---------------------LYVFK--- 164 (239)
Q Consensus 109 P~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQ---------------------Ly~~~--- 164 (239)
|-+++++. .+|=..+.+.|++.|++++..-+....++.+.+..+ ++| +.+.+
T Consensus 57 ~~sf~G~G-~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vd---ilqIgs~~~~n~~LL~~va~tgkPVilk~G~~ 132 (250)
T PRK13397 57 AASFQGLG-LQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLD---VIQVGARNMQNFEFLKTLSHIDKPILFKRGLM 132 (250)
T ss_pred CcccCCCC-HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCC---EEEECcccccCHHHHHHHHccCCeEEEeCCCC
Confidence 44445543 356778888888888888887777666666644211 111 22222
Q ss_pred -CHHHHHHHHHHHHHcCCcEEEEee
Q 026410 165 -KRDIAATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 165 -dr~~~~~li~rAe~aG~~AlvvTV 188 (239)
+.+..+..++...+.|.+-|+++=
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 345556666677778887777764
No 118
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=40.82 E-value=33 Score=26.47 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecC
Q 026410 166 RDIAATLVQRAERNGFKALV-LTADT 190 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~ 190 (239)
++..++|.++|++.|+.|++ +.+|.
T Consensus 59 ~~A~~~L~~~A~~~GAnAVIgv~~~~ 84 (105)
T PF01906_consen 59 EEALERLKEEAKELGANAVIGVRFDY 84 (105)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEEEe
Confidence 45568999999999999975 44544
No 119
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=40.37 E-value=88 Score=25.98 Aligned_cols=43 Identities=33% Similarity=0.596 Sum_probs=34.3
Q ss_pred CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEE-eecCCCC-CCc
Q 026410 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVL-TADTPRL-GRR 196 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alvv-TVD~p~~-g~R 196 (239)
.+...+.+...+.+...++.+++.+.|..++|+ ..|+++. |+|
T Consensus 150 ~i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~~~~~Y~~Gkr 194 (202)
T PF01068_consen 150 RIRIVESYVVNSKEELEELFEEAIDQGFEGLVLKDPDSPYEPGKR 194 (202)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEETTSSC-TTEE
T ss_pred ceeEeeeecCCCHHHHHHHHHHHHHcCCceEEEECCCCccCCCCc
Confidence 344555666778889999999999999999999 6899887 565
No 120
>PRK02877 hypothetical protein; Provisional
Probab=39.34 E-value=36 Score=26.80 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 026410 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~~g 194 (239)
++..++|.++|++.|+.||+ +.+|....|
T Consensus 59 ~~A~~rm~~~A~~lGAnAVIgvr~d~~~i~ 88 (106)
T PRK02877 59 EIAFEELGEQARALGADAVVGIDIDYETVG 88 (106)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEehhcc
Confidence 34558899999999999976 667765554
No 121
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=38.63 E-value=2.1e+02 Score=26.44 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=52.6
Q ss_pred ceEeccccchhccCcHHHHHHHHHHhhcCC-ceeecCC-CCC-----cHHHHHhhcC--CceeEEEEeecCHHHHHHHHH
Q 026410 104 PIIIAPTALHKLANPEGEVATARAAASCNT-IMVLSFT-SSS-----SIEEVAASCN--AVRFYQLYVFKKRDIAATLVQ 174 (239)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~alArAA~~~gi-~~~lSs~-ss~-----sleeia~~~~--~~~wfQLy~~~dr~~~~~li~ 174 (239)
||++|||++.. +...=+.++..|. -.+.+-+ +.. ...++....+ .+.-+||. -.|.+...+..+
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 78999986553 3334445566665 3433332 111 1122222222 56778986 566777788889
Q ss_pred HHHHcCCcEEEEeecCCCC
Q 026410 175 RAERNGFKALVLTADTPRL 193 (239)
Q Consensus 175 rAe~aG~~AlvvTVD~p~~ 193 (239)
++++.||++|=|..-.|..
T Consensus 75 ~~~~~g~d~IDlN~GCP~~ 93 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSD 93 (318)
T ss_pred HHHhCCCCEEEEECCCCHH
Confidence 9999999999999988865
No 122
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=38.62 E-value=2.9e+02 Score=24.84 Aligned_cols=85 Identities=15% Similarity=0.028 Sum_probs=53.8
Q ss_pred cceEeccccchhccCcHHHHHHHHHHhh-cCCce--eecC---CCCCcHHHHH-------hhcCC--ceeEEEEeecCHH
Q 026410 103 APIIIAPTALHKLANPEGEVATARAAAS-CNTIM--VLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRD 167 (239)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~alArAA~~-~gi~~--~lSs---~ss~sleeia-------~~~~~--~~wfQLy~~~dr~ 167 (239)
.|.++.|+--.+-.+.++=..+++-..+ .|+-- +.|| +.+.|.||-. +..++ +...++- ..+-+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC-CCCHH
Confidence 4667778765555677777788888877 77643 3444 3345666532 22232 2333431 23456
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 026410 168 IAATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTV 188 (239)
.+.++.+.|+++|++++++.-
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeC
Confidence 678889999999999999874
No 123
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=38.57 E-value=71 Score=29.97 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCC----Cc---HHHHHh-------hc--CCceeEEEEeecCHHHHHHHHHHHHHcC
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSS----SS---IEEVAA-------SC--NAVRFYQLYVFKKRDIAATLVQRAERNG 180 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss----~s---leeia~-------~~--~~~~wfQLy~~~dr~~~~~li~rAe~aG 180 (239)
+.+.=.++.+||++.+.|.++....+ .. ++.+.. .. .-+-..+| |.....+.+.+|.++|
T Consensus 33 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHL----DHg~~~e~i~~ai~~G 108 (321)
T PRK07084 33 NMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHL----DHGDSFELCKDCIDSG 108 (321)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEEC----CCCCCHHHHHHHHHcC
Confidence 34555799999999999999975321 12 333221 11 11333333 6666678899999999
Q ss_pred CcEEEEee
Q 026410 181 FKALVLTA 188 (239)
Q Consensus 181 ~~AlvvTV 188 (239)
|.-++++-
T Consensus 109 ftSVMiD~ 116 (321)
T PRK07084 109 FSSVMIDG 116 (321)
T ss_pred CCEEEeeC
Confidence 98887753
No 124
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=38.28 E-value=56 Score=28.76 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=44.0
Q ss_pred ccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecC-CCC----CcHHHHHhhcC----CceeEEEEeecCHHHHH
Q 026410 100 KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSF-TSS----SSIEEVAASCN----AVRFYQLYVFKKRDIAA 170 (239)
Q Consensus 100 ~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs-~ss----~sleeia~~~~----~~~wfQLy~~~dr~~~~ 170 (239)
-+..|+...++.+. ..+-+..+.++.++.++-.+++- ..+ .-+|.+++..+ .|.|- +|+ +
T Consensus 56 algipl~~~~~~g~---~~~~~~~l~~~l~~~~v~~vv~GdI~~~~~r~~~e~vc~~lGl~~~~PLW~-----~d~---~ 124 (218)
T PF01902_consen 56 ALGIPLIEIPTSGD---EEDYVEDLKEALKELKVEAVVFGDIDSEYQRNWVERVCERLGLEAVFPLWG-----RDR---E 124 (218)
T ss_dssp HHT--EEEEEE------CCCHHHHHHHHHCTC--SEEE--TTS-HHHHHHHHHHHHHCT-EEE-TTTT-------H---H
T ss_pred HCCCCEEEEEccCc---cchhhHHHHHHHHHcCCCEEEECcCCcHHHHHHHHHHHHHcCCEEEecccC-----CCH---H
Confidence 34568888777543 22334677777888887666643 221 12355555543 23331 233 4
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCC
Q 026410 171 TLVQRAERNGFKALVLTADTPRLG 194 (239)
Q Consensus 171 ~li~rAe~aG~~AlvvTVD~p~~g 194 (239)
+++++..+.|++++++.||+..++
T Consensus 125 ~ll~e~i~~Gf~aiIv~V~~~~L~ 148 (218)
T PF01902_consen 125 ELLREFIESGFEAIIVKVDADGLD 148 (218)
T ss_dssp HHHHHHHHTT-EEEEEEEESTT--
T ss_pred HHHHHHHHCCCeEEEEEEeccCCC
Confidence 677777789999999999998764
No 125
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=37.80 E-value=2.3e+02 Score=26.74 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 026410 167 DIAATLVQRAERNGFKALVLTADTPRLGR 195 (239)
Q Consensus 167 ~~~~~li~rAe~aG~~AlvvTVD~p~~g~ 195 (239)
+...++++++.++|++.|.+ .|+.....
T Consensus 145 ~~l~~~~~~~~~~Ga~~I~l-~DT~G~~~ 172 (378)
T PRK11858 145 DFLIEFAKAAEEAGADRVRF-CDTVGILD 172 (378)
T ss_pred HHHHHHHHHHHhCCCCEEEE-eccCCCCC
Confidence 45567778888888886544 47765544
No 126
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=37.74 E-value=1.1e+02 Score=28.24 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCceeecCCCCC--cHHHHHhhcCCce-eEEEEeecCHHHHHHHHHHHHHcCCcEEEEee
Q 026410 122 VATARAAASCNTIMVLSFTSSS--SIEEVAASCNAVR-FYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 122 ~alArAA~~~gi~~~lSs~ss~--sleeia~~~~~~~-wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTV 188 (239)
....+.+.+.|++++.-+.... -++++++. +.. |-++ . +.+..++|+++|+++|+++-
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~--g~~v~~~v---~----s~~~a~~a~~~GaD~Ivv~g 137 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKEN--GVKVIPVV---A----SVALAKRMEKAGADAVIAEG 137 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHc--CCEEEEEc---C----CHHHHHHHHHcCCCEEEEEC
Confidence 3566777778998877554321 12344333 332 3222 1 24567899999999999854
No 127
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=36.51 E-value=1.2e+02 Score=27.29 Aligned_cols=70 Identities=16% Similarity=0.082 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcC--Cce----------------eEEEEeec----CHHHHHHHHHH
Q 026410 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN--AVR----------------FYQLYVFK----KRDIAATLVQR 175 (239)
Q Consensus 118 p~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~--~~~----------------wfQLy~~~----dr~~~~~li~r 175 (239)
.+|=..+.+.|++.|++++.+-+...+++.+.+..+ .+. =..+.+.+ +.+.....++.
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~ 154 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEY 154 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 456677888889999998888777766666543321 000 00122222 45556666777
Q ss_pred HHHcCCcEEEEe
Q 026410 176 AERNGFKALVLT 187 (239)
Q Consensus 176 Ae~aG~~AlvvT 187 (239)
....|.+-|+|+
T Consensus 155 i~~~Gn~~i~l~ 166 (260)
T TIGR01361 155 ILSSGNGNVILC 166 (260)
T ss_pred HHHcCCCcEEEE
Confidence 778898777774
No 128
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=36.23 E-value=2.1e+02 Score=26.12 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=54.4
Q ss_pred CcceEeccccchhccCcHHHHHHHHHHhhcCCc--eeecC---CCCCcHHHHH-------hhcCC--ceeEEEEeecCHH
Q 026410 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRD 167 (239)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~--~~lSs---~ss~sleeia-------~~~~~--~~wfQLy~~~dr~ 167 (239)
..|.++.|+.-.+-.+.++-..+++-..+.|+- +.+|| ..+.|.||-. ++..+ +-..+.- ..+-+
T Consensus 8 vi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~ 86 (299)
T COG0329 8 VIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTA 86 (299)
T ss_pred ceeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHH
Confidence 357778887654445777778888888888764 33343 3345666532 22222 1222221 23456
Q ss_pred HHHHHHHHHHHcCCcEEEEeec
Q 026410 168 IAATLVQRAERNGFKALVLTAD 189 (239)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD 189 (239)
...++.+.|++.|++++++.-=
T Consensus 87 eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 87 EAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEeCC
Confidence 6788999999999999988753
No 129
>PRK12856 hypothetical protein; Provisional
Probab=36.15 E-value=44 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCC
Q 026410 166 RDIAATLVQRAERNGFKALV-LTADTPRL 193 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~~ 193 (239)
++..+++.++|++.|+.|++ +.+|....
T Consensus 59 ~~A~~rm~~~A~~lGAnAVvgvr~d~~~~ 87 (103)
T PRK12856 59 DIAMDEMKELAKQKGANAIVGVDVDYEVV 87 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHh
Confidence 34558899999999999975 66666543
No 130
>PRK01119 hypothetical protein; Provisional
Probab=36.11 E-value=44 Score=26.32 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 026410 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~~g 194 (239)
++..+++.++|++.|+.||+ |.+|....|
T Consensus 59 ~~A~~rm~~~A~~lGAnAVIgvr~d~~~ig 88 (106)
T PRK01119 59 EEAIREMEQRAKDIGANAVIGVDIDYEVLG 88 (106)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeeec
Confidence 34558999999999999987 777765543
No 131
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=36.03 E-value=1.2e+02 Score=27.42 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=24.8
Q ss_pred cCHHHHHHHHHHHH---HcCCcEEEEeecCCCCCCchhHhhcCCCCC
Q 026410 164 KKRDIAATLVQRAE---RNGFKALVLTADTPRLGRREADIKNKMITP 207 (239)
Q Consensus 164 ~dr~~~~~li~rAe---~aG~~AlvvTVD~p~~g~Re~d~r~~f~~p 207 (239)
++.+..+++++||+ +||+.+|++-.=.. .=-+.+.....+|
T Consensus 152 rt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~---~~~~~i~~~v~iP 195 (254)
T cd06557 152 KTEEEAERLLEDALALEEAGAFALVLECVPA---ELAKEITEALSIP 195 (254)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH---HHHHHHHHhCCCC
Confidence 34444678888885 79999999854321 1223334455666
No 132
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=35.24 E-value=39 Score=30.92 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=22.6
Q ss_pred HHHH-HHcCCcEEEEeecCCCCCCchhHh
Q 026410 173 VQRA-ERNGFKALVLTADTPRLGRREADI 200 (239)
Q Consensus 173 i~rA-e~aG~~AlvvTVD~p~~g~Re~d~ 200 (239)
..-| +.+|=.++.||||+|+..+|+...
T Consensus 34 a~la~~~lG~~v~AvTv~sP~~p~~e~e~ 62 (269)
T COG1606 34 AKLAKEALGDNVVAVTVDSPYIPRREIEE 62 (269)
T ss_pred HHHHHHHhccceEEEEEecCCCChhhhhH
Confidence 3344 679999999999999999987543
No 133
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=33.94 E-value=1.6e+02 Score=20.43 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=25.6
Q ss_pred CCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 153 NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 153 ~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
++...+=+-..+....+.++++.|++.|++.+++|
T Consensus 47 ~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 47 KGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 33334434445555668889999999999999999
No 134
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.43 E-value=73 Score=30.27 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=29.7
Q ss_pred ccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhh
Q 026410 110 TALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (239)
Q Consensus 110 ~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~ 151 (239)
-+.+++. .+|-..+.+++++.|++++..-+....++.+.+.
T Consensus 144 ~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~ 184 (352)
T PRK13396 144 YAFQGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEV 184 (352)
T ss_pred cccCCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh
Confidence 3445543 4566788899999999999887777777766554
No 135
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=33.20 E-value=1.1e+02 Score=27.90 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=23.4
Q ss_pred HHhhcC-CceeecCCCCCcHHHHHhhc-CCceeEEEEeec-----CHHHHHHHHHHHHHcCC
Q 026410 127 AAASCN-TIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFK-----KRDIAATLVQRAERNGF 181 (239)
Q Consensus 127 AA~~~g-i~~~lSs~ss~sleeia~~~-~~~~wfQLy~~~-----dr~~~~~li~rAe~aG~ 181 (239)
.|++.+ +|+++----..+++.|..+. .|..+.|+=-.. +-+.++++++.+.+.|+
T Consensus 68 ~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv 129 (282)
T TIGR01859 68 LIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGV 129 (282)
T ss_pred HHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 344455 55555432223455444443 233344442211 12334455555555554
No 136
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=33.12 E-value=3.6e+02 Score=24.14 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=59.6
Q ss_pred ccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHH---HHhhcCCceeEEEEee----------cCHHHHHHHHHHH
Q 026410 110 TALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEE---VAASCNAVRFYQLYVF----------KKRDIAATLVQRA 176 (239)
Q Consensus 110 ~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~slee---ia~~~~~~~wfQLy~~----------~dr~~~~~li~rA 176 (239)
+|+--..+++.-..++++|++.|+..++-|....+-+. +.+..+ .-++=|..+ .+.+.+.+-++.+
T Consensus 90 SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D-~v~~DlK~~~~~~y~~~tg~~~~~vl~~~~~l 168 (260)
T COG1180 90 SGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLD-AVLLDLKAFDDELYRKLTGADNEPVLENLELL 168 (260)
T ss_pred ECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcC-eEEEeeccCChHHHHHHhCCCcHHHHHHHHHH
Confidence 44444556777789999999999999999876654443 333322 122222222 2335566777777
Q ss_pred HHcCCcEEEEeecCCCCCCchhHhh
Q 026410 177 ERNGFKALVLTADTPRLGRREADIK 201 (239)
Q Consensus 177 e~aG~~AlvvTVD~p~~g~Re~d~r 201 (239)
.+.|...-+-|+=.|.....+.+++
T Consensus 169 ~~~g~~ve~r~lviPg~~d~~e~i~ 193 (260)
T COG1180 169 ADLGVHVEIRTLVIPGYNDDEEEIR 193 (260)
T ss_pred HcCCCeEEEEEEEECCCCCCHHHHH
Confidence 7888888777777777656666665
No 137
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculosis LigB. Members of this group contain adeny
Probab=33.10 E-value=1.3e+02 Score=25.72 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=30.3
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEe-ecCCCC-CCchhH
Q 026410 162 VFKKRDIAATLVQRAERNGFKALVLT-ADTPRL-GRREAD 199 (239)
Q Consensus 162 ~~~dr~~~~~li~rAe~aG~~AlvvT-VD~p~~-g~Re~d 199 (239)
...+.+...++++++.+.|..+||+- .|+++. |+|..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~g~EGiv~K~~~s~Y~~g~Rs~~ 200 (207)
T cd07901 161 VTDDPEEAEEFFEEALEAGHEGVMVKSLDSPYQAGRRGKN 200 (207)
T ss_pred ecCCHHHHHHHHHHHHHcCCceEEEeCCCCCcCCCCCCCC
Confidence 34577888999999999999999997 788884 556543
No 138
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=32.87 E-value=2e+02 Score=26.52 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCC
Q 026410 170 ATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 170 ~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
.+++++|.++|....+-|||.+..
T Consensus 266 ~~~V~~ah~~Gl~V~~wTvn~~~~ 289 (318)
T cd08600 266 TDLVKDAHEAGLEVHPYTVRKDAL 289 (318)
T ss_pred HHHHHHHHHcCCEEEEEeccCCcc
Confidence 488999999999999999998753
No 139
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=32.64 E-value=52 Score=26.17 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 026410 167 DIAATLVQRAERNGFKALV-LTADTPRLG 194 (239)
Q Consensus 167 ~~~~~li~rAe~aG~~Alv-vTVD~p~~g 194 (239)
+...++.++|++.|+.|++ |-+|....|
T Consensus 60 ~Al~rm~~~A~~lGAnAVVgvr~d~~~ig 88 (108)
T COG0393 60 EALERMVDEAEALGANAVVGVRFDYSTIG 88 (108)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEechhHhC
Confidence 4458899999999999975 666665544
No 140
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=32.31 E-value=1.7e+02 Score=28.10 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCceeec---CCCCCcHHHHHhhcC----CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 119 EGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN----AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 119 ~gE~alArAA~~~gi~~~lS---s~ss~sleeia~~~~----~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
.|+.++|.||..+|+-++.+ |-+|.=+|.+++..+ +..|.|. .|.-.....+-=|.-+|++++.-|
T Consensus 7 ~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~---E~E~aA~~~aiGAs~aGaRa~TaT 79 (390)
T PRK08366 7 SGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPV---ESEHSAMAACIGASAAGARAFTAT 79 (390)
T ss_pred eHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEe---CCHHHHHHHHHHHHhhCCCeEeee
Confidence 69999999999999988765 222222344554433 3456665 455555777777888899887654
No 141
>PRK00967 hypothetical protein; Provisional
Probab=32.14 E-value=55 Score=25.59 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 026410 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~~g 194 (239)
++..++|.++|++.|++||+ |.+|....+
T Consensus 59 ~eA~~rm~~~A~~~GAnAIIgvr~d~~~~~ 88 (105)
T PRK00967 59 DIAIDRMKEEAKQKGANAIVGMRFDSSSIR 88 (105)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeeec
Confidence 35568999999999999987 778876553
No 142
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=32.08 E-value=56 Score=30.48 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCCCCCcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceee
Q 026410 86 DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL 137 (239)
Q Consensus 86 dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~l 137 (239)
...+. ++|+++|.++..||++|. ..++.....+...++|..+++
T Consensus 41 ~~~~~-L~~~~~Gl~l~NPi~lAs-------G~~~~~~~~~~~~~~G~Gavv 84 (335)
T TIGR01036 41 GASDP-LEVTVLGLKFPNPLGLAA-------GFDKDGEAIDALGAMGFGFLE 84 (335)
T ss_pred cCCCC-CcEEECCEECCCCcEeCC-------ccCCCHHHHHHHHhcCCCEEE
No 143
>TIGR00035 asp_race aspartate racemase.
Probab=31.78 E-value=51 Score=28.61 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=43.7
Q ss_pred cCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhHhhcCCCCC
Q 026410 131 CNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP 207 (239)
Q Consensus 131 ~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re~d~r~~f~~p 207 (239)
..+++++=+. ..+.|..+..-...|-. -...+.+.+++.+++|++++++..+++..- .++++..+.+|
T Consensus 33 ~~~~~i~~~~--~~~~dr~~~~~~~~~~~-----~~~~l~~~~~~L~~~g~d~iviaCNTah~~--~~~l~~~~~iP 100 (229)
T TIGR00035 33 EHPAEVLFNN--PNIPDRTAYILGRGEDR-----PRPILIDIAVKLENAGADFIIMPCNTAHKF--AEDIQKAIGIP 100 (229)
T ss_pred CCCceeeeeC--CCHHHHHHHHhcCCcch-----HHHHHHHHHHHHHHcCCCEEEECCccHHHH--HHHHHHhCCCC
Confidence 3466666333 34666544321111211 134567888999999999999999997764 46788877777
No 144
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=31.68 E-value=1.8e+02 Score=24.08 Aligned_cols=81 Identities=16% Similarity=0.303 Sum_probs=44.2
Q ss_pred ccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCC-CCcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHH
Q 026410 100 KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTS-SSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAER 178 (239)
Q Consensus 100 ~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~s-s~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~ 178 (239)
.++.||.-=|+++..+ =.++.++-...+-..+++... ...++.+.+..+- . +..|...+.+.....++++++
T Consensus 51 ~~~iPVV~I~~s~~Di-----l~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~-~-i~~~~~~~~~e~~~~i~~~~~ 123 (176)
T PF06506_consen 51 HVSIPVVEIPISGFDI-----LRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGV-D-IKIYPYDSEEEIEAAIKQAKA 123 (176)
T ss_dssp C-SS-EEEE---HHHH-----HHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT--E-EEEEEESSHHHHHHHHHHHHH
T ss_pred hCCCCEEEECCCHhHH-----HHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCC-c-eEEEEECCHHHHHHHHHHHHH
Confidence 3456777666544432 334444333322333333322 2347777766542 1 356778899999999999999
Q ss_pred cCCcEEEEe
Q 026410 179 NGFKALVLT 187 (239)
Q Consensus 179 aG~~AlvvT 187 (239)
.|++.++=.
T Consensus 124 ~G~~viVGg 132 (176)
T PF06506_consen 124 EGVDVIVGG 132 (176)
T ss_dssp TT--EEEES
T ss_pred cCCcEEECC
Confidence 999988743
No 145
>PRK01217 hypothetical protein; Provisional
Probab=31.57 E-value=57 Score=26.04 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 026410 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p~~g 194 (239)
++...+|+++|++.|+.||+ |.+|+...|
T Consensus 66 ~eA~~rm~~~A~~lGAnAVVgvrfd~s~i~ 95 (114)
T PRK01217 66 NQALERMIDHAKELGANAVINVRFDSNEIS 95 (114)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEHHHhc
Confidence 34568999999999999975 677765544
No 146
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=31.48 E-value=1.7e+02 Score=26.82 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=10.8
Q ss_pred HHHHHHHHhhcCCceeecC
Q 026410 121 EVATARAAASCNTIMVLSF 139 (239)
Q Consensus 121 E~alArAA~~~gi~~~lSs 139 (239)
=.++.+||++.+.|.++..
T Consensus 31 ~~avi~aAe~~~sPvIlq~ 49 (293)
T PRK07315 31 TQAILRAAEAKKAPVLIQT 49 (293)
T ss_pred HHHHHHHHHHHCCCEEEEc
Confidence 3455566666666666543
No 147
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=31.43 E-value=79 Score=21.55 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=19.7
Q ss_pred ceeEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q 026410 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (239)
Q Consensus 155 ~~wfQLy~~~dr~~~~~li~rAe~aG~~Alv 185 (239)
..++|+..+++++...+++++....|..+.+
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~ 34 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYV 34 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcce
Confidence 4677888888888888888888877877654
No 148
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=31.03 E-value=1.2e+02 Score=27.22 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=57.3
Q ss_pred eeecCcccCcceEeccccchhccCcHHH-HHHHHHHhhcCCceeecC-CCC----CcHHHHHhhcCCceeEEEEeecCHH
Q 026410 94 TTILDYKISAPIIIAPTALHKLANPEGE-VATARAAASCNTIMVLSF-TSS----SSIEEVAASCNAVRFYQLYVFKKRD 167 (239)
Q Consensus 94 t~llG~~~s~Pi~iaP~g~~~l~hp~gE-~alArAA~~~gi~~~lSs-~ss----~sleeia~~~~~~~wfQLy~~~dr~ 167 (239)
+.+.+.-+..|++...+.+. .+-| ..++++-...++-.+++- ..| .-+|.|++..+-.....| |.+|.
T Consensus 51 ~~~~Ae~~gi~l~~~~~~g~----~e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PL-Wg~d~- 124 (223)
T COG2102 51 AELQAEAMGIPLVTFDTSGE----EEREVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLKVYAPL-WGRDP- 124 (223)
T ss_pred HHHHHHhcCCceEEEecCcc----chhhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCEEeecc-cCCCH-
Confidence 33456667778888887662 2223 366667777775555443 121 345667766542111122 12344
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 026410 168 IAATLVQRAERNGFKALVLTADTPRLGR 195 (239)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~~g~ 195 (239)
.++++.-..+||++++|-|++..++.
T Consensus 125 --~ell~e~~~~Gf~~~Iv~Vsa~gL~~ 150 (223)
T COG2102 125 --EELLEEMVEAGFEAIIVAVSAEGLDE 150 (223)
T ss_pred --HHHHHHHHHcCCeEEEEEEeccCCCh
Confidence 36777777899999999999998875
No 149
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=30.99 E-value=3.6e+02 Score=24.85 Aligned_cols=82 Identities=18% Similarity=0.135 Sum_probs=44.8
Q ss_pred CcceEeccccchhccCcHHHHHHHHHHhhcCCcee---ecCC------CCCc----H----HHHHhhcCCceeEEEEeec
Q 026410 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMV---LSFT------SSSS----I----EEVAASCNAVRFYQLYVFK 164 (239)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~---lSs~------ss~s----l----eeia~~~~~~~wfQLy~~~ 164 (239)
..||+++ +.+. .++.-...++.++++|.-++ +|.. .... + +.|.++..-+.|.=| ..
T Consensus 99 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl--~p 172 (325)
T cd04739 99 SIPVIAS-LNGV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKL--SP 172 (325)
T ss_pred CCeEEEE-eCCC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEc--CC
Confidence 4687776 3222 23444677777777764433 3321 1111 1 223333333444333 23
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeec
Q 026410 165 KRDIAATLVQRAERNGFKALVLTAD 189 (239)
Q Consensus 165 dr~~~~~li~rAe~aG~~AlvvTVD 189 (239)
+-+...++++.++++|+++|+++==
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcC
Confidence 3345678899999999999998543
No 150
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=30.76 E-value=36 Score=30.68 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.0
Q ss_pred cceeecCcccCcceEecc
Q 026410 92 LSTTILDYKISAPIIIAP 109 (239)
Q Consensus 92 tst~llG~~~s~Pi~iaP 109 (239)
++|+++|.++..||++|.
T Consensus 2 L~~~~~Gl~l~nPi~~as 19 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLAS 19 (295)
T ss_dssp G-EEETTEEESSSEEE-T
T ss_pred ccEEECCEEcCCCcEECC
Confidence 689999999999999975
No 151
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=30.59 E-value=1.4e+02 Score=26.48 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 168 IAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
.+.++++++.+.|.+-.+-|||.+..
T Consensus 216 ~~~~~v~~~~~~G~~v~vWTVn~~~~ 241 (258)
T cd08573 216 ISSAYVRYWRARGIRVIAWTVNTPTE 241 (258)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCHHH
Confidence 45788999999999999999998654
No 152
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=30.25 E-value=65 Score=31.56 Aligned_cols=28 Identities=36% Similarity=0.354 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 166 RDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
-+...+-+++|++.++.++++.+|+|..
T Consensus 42 ~~~l~r~l~~A~~~~a~~vvl~ldTPGG 69 (436)
T COG1030 42 ADYLQRALQSAEEENAAAVVLELDTPGG 69 (436)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCCCc
Confidence 3455777899999999999999999874
No 153
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=30.22 E-value=1.1e+02 Score=27.80 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 026410 168 IAATLVQRAERNGFKALVLTADTPR 192 (239)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~ 192 (239)
.+.++++++.++|.+-.+-|||.+.
T Consensus 249 ~~~~~v~~~~~~G~~v~vWTVNd~~ 273 (300)
T cd08612 249 MRPSLFRHLQKRGIQVYGWVLNDEE 273 (300)
T ss_pred CCHHHHHHHHHCCCEEEEeecCCHH
Confidence 3578999999999999999999753
No 154
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=30.16 E-value=50 Score=29.96 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=40.1
Q ss_pred HHHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCHHHH----HHHHHHHHHcCCcEEEEee
Q 026410 123 ATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIA----ATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 123 alArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr~~~----~~li~rAe~aG~~AlvvTV 188 (239)
-+.++|.+.|.-.++-+.-.. ....+...||++|....|+.+ .+..+++++.|+.-|+||-
T Consensus 112 lI~~~a~~FGsQciVvaIDak-----r~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLts 176 (256)
T COG0107 112 LITEAADRFGSQCIVVAIDAK-----RVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTS 176 (256)
T ss_pred HHHHHHHHhCCceEEEEEEee-----eccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEee
Confidence 456667777766665332211 110123568999998766543 6888999999999999984
No 155
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=30.06 E-value=1.7e+02 Score=27.79 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCceeecCCCCCc----HHHHHhhcC--CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 119 EGEVATARAAASCNTIMVLSFTSSSS----IEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 119 ~gE~alArAA~~~gi~~~lSs~ss~s----leeia~~~~--~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
.|+.|+|+||..+|+-++.+ +..+| +|.+++..+ +..++|. .|.-.....+-=|.-+|++|+.-|
T Consensus 7 ~GNeAiA~ga~~ag~~~~a~-YPITPsTeI~e~la~~~~~~g~~~vq~---E~E~aA~~~a~GAs~aG~Ra~taT 77 (375)
T PRK09627 7 TGNELVAKAAIECGCRFFGG-YPITPSSEIAHEMSVLLPKCGGTFIQM---EDEISGISVALGASMSGVKSMTAS 77 (375)
T ss_pred chHHHHHHHHHHhCCCEEEE-eCCCChhHHHHHHHHHHHHcCCEEEEc---CCHHHHHHHHHHHHhhCCCEEeec
Confidence 69999999999999988775 32222 244554433 3344444 455555777777888999988776
No 156
>PLN02858 fructose-bisphosphate aldolase
Probab=29.75 E-value=1.1e+02 Score=34.10 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCCceeecCCCC----CcHH------HHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 122 VATARAAASCNTIMVLSFTSS----SSIE------EVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 122 ~alArAA~~~gi~~~lSs~ss----~sle------eia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
.++.+||++.+.|.++..... .+++ ..++...-+-. +--|.....+.+.+|-++||.-++++
T Consensus 1128 ~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~----lHLDHg~~~~~i~~ai~~Gf~SVM~D 1199 (1378)
T PLN02858 1128 EAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQASVPIT----VHFDHGTSKHELLEALELGFDSVMVD 1199 (1378)
T ss_pred HHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHCCCCEE----EECCCCCCHHHHHHHHHhCCCEEEEe
Confidence 588888888888888875422 1222 12222222222 23366666788888888888887765
No 157
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=29.60 E-value=2.4e+02 Score=21.08 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=28.1
Q ss_pred CCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecC
Q 026410 153 NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT 190 (239)
Q Consensus 153 ~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~ 190 (239)
++..++=+-..+....+.++++.|++.|++.++||-+.
T Consensus 60 ~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 60 PGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 34455544445566667888999999999999999874
No 158
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.52 E-value=2.4e+02 Score=25.78 Aligned_cols=29 Identities=17% Similarity=0.013 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhcCCceeecCCCCCcHHHH
Q 026410 120 GEVATARAAASCNTIMVLSFTSSSSIEEV 148 (239)
Q Consensus 120 gE~alArAA~~~gi~~~lSs~ss~sleei 148 (239)
.+...++.|-+.|...+.=..++.+.+|.
T Consensus 85 ~~~e~i~~Al~~G~tsVm~d~s~~~~~en 113 (281)
T PRK06806 85 MTFEKIKEALEIGFTSVMFDGSHLPLEEN 113 (281)
T ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCHHHH
Confidence 35667777777777666666666666653
No 159
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=29.33 E-value=86 Score=30.82 Aligned_cols=113 Identities=16% Similarity=0.230 Sum_probs=66.2
Q ss_pred HHhccccccccccc-CCCCCCcceee-cCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHH
Q 026410 72 EAFHRITFRPRILV-DVSRIDLSTTI-LDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA 149 (239)
Q Consensus 72 ~af~ri~l~PRvL~-dv~~~Dtst~l-lG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia 149 (239)
-.|+.+.|+|...- ..+++|+++.| +-.+++.|++.|||-- -.|..+|-+.+.+|-.-++- -.++.|+=+
T Consensus 30 LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDT------Vtes~MAiaMAl~ggIg~IH--hNctpe~QA 101 (503)
T KOG2550|consen 30 LTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDT------VTESEMAIAMALLGGIGFIH--HNCTPEDQA 101 (503)
T ss_pred ccccceeecccccccccccceeehhhhhcccccCceeccCCcc------cchhHHHHHHHhcCCceeee--cCCCHHHHH
Confidence 45888999998765 34578888775 5678899999999732 24556666666665555553 344555533
Q ss_pred hhc------CCceeE-EEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 150 ASC------NAVRFY-QLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 150 ~~~------~~~~wf-QLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
... .+...- .+.+..+. .+-+.++-=+..||..+-+|-|.-..
T Consensus 102 ~~v~~vK~~~~g~~~~p~v~sp~~-tvg~v~~~k~~~gF~g~pvTe~g~~~ 151 (503)
T KOG2550|consen 102 DMVRRVKNYENGFINNPIVISPTT-TVGEVKEAKEKHGFSGIPVTEDGKRG 151 (503)
T ss_pred HHHHHHHHhhcccccCCcccCCcc-cchhhhhhcccccccccccccCCccc
Confidence 221 110000 11111211 12344444457899999999776553
No 160
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=29.20 E-value=3.5e+02 Score=22.81 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=30.1
Q ss_pred CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
.+...||. -.+.+...+..++++++||++|=|++-.|..
T Consensus 55 ~p~~~qi~-g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~ 93 (231)
T cd02801 55 RPLIVQLG-GSDPETLAEAAKIVEELGADGIDLNMGCPSP 93 (231)
T ss_pred CCEEEEEc-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 45667876 3456666788899999999999999887653
No 161
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=29.15 E-value=1.7e+02 Score=26.68 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=42.8
Q ss_pred HHHHHHhhcCCceeecCCCCCcHHHHHhhc--CCceeEEEEeecCHHHHHHHHHHH-HHcCCcEEEEeecCCC
Q 026410 123 ATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVFKKRDIAATLVQRA-ERNGFKALVLTADTPR 192 (239)
Q Consensus 123 alArAA~~~gi~~~lSs~ss~sleeia~~~--~~~~wfQLy~~~dr~~~~~li~rA-e~aG~~AlvvTVD~p~ 192 (239)
-+.|.|+..-||++++-. ..++||+.... +.. -+-+...-=..-++|.++ ++-|...+|+.+|+-.
T Consensus 65 vv~r~A~~vfiPltVGGG-I~s~eD~~~ll~aGAD---KVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr 133 (256)
T COG0107 65 VVERVAEQVFIPLTVGGG-IRSVEDARKLLRAGAD---KVSINSAAVKDPELITEAADRFGSQCIVVAIDAKR 133 (256)
T ss_pred HHHHHHhhceeeeEecCC-cCCHHHHHHHHHcCCC---eeeeChhHhcChHHHHHHHHHhCCceEEEEEEeee
Confidence 467889999999999854 47789887543 211 111111100112466665 5799999999999855
No 162
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=29.08 E-value=1.9e+02 Score=27.65 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHhhcCCceeecCCCC---CcH-HHHHhhcC-C---ceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 118 PEGEVATARAAASCNTIMVLSFTSS---SSI-EEVAASCN-A---VRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 118 p~gE~alArAA~~~gi~~~lSs~ss---~sl-eeia~~~~-~---~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
-.|+.|+|+||..+|+-+..+ +.. +++ |.+++..+ + -.|+|. .|.-.....+-=|-.+|++++..|
T Consensus 13 ~~GNeAiA~ga~~Ag~~~~a~-YPITPsTeI~e~la~~~~~g~~~~~~vq~---E~E~~A~~~~~GAs~aGaRa~TaT 86 (407)
T PRK09622 13 WDGNTAASNALRQAQIDVVAA-YPITPSTPIVQNYGSFKANGYVDGEFVMV---ESEHAAMSACVGAAAAGGRVATAT 86 (407)
T ss_pred cchHHHHHHHHHHhCCCEEEE-ECCCCccHHHHHHHHHhhCCCcCcEEEee---ccHHHHHHHHHHHHhhCcCEEeec
Confidence 369999999999999987765 222 222 44444333 2 245553 466666788888888999987654
No 163
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.90 E-value=48 Score=29.56 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=36.7
Q ss_pred CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 026410 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRRE 197 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re 197 (239)
+-+-.||=-.++.+...+++.+.+.+||.|.+-.. +|+.|.=.
T Consensus 150 ~a~~VQLgAl~n~dranel~~~Lr~~G~~ayi~~~-~p~qg~lt 192 (226)
T COG3147 150 QAFVVQLGALKNADRANELVAKLRGAGYRAYIEPS-TPVQGDLT 192 (226)
T ss_pred cceeehhhhhhhHHHHHHHHHHHHhCCCceeeccc-CCCCCcee
Confidence 44567888899999999999999999999999998 77776543
No 164
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=28.73 E-value=88 Score=26.31 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 026410 165 KRDIAATLVQRAERNGFKALVLTADTPRLG 194 (239)
Q Consensus 165 dr~~~~~li~rAe~aG~~AlvvTVD~p~~g 194 (239)
+.+.+.+.+++|++-+.++|+|.+|+|..-
T Consensus 14 ~~~~l~~~l~~a~~~~~~~vvl~InSpGG~ 43 (187)
T cd07020 14 TADYLERAIDQAEEGGADALIIELDTPGGL 43 (187)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEECCCCC
Confidence 445667888888887899999999999853
No 165
>PRK10200 putative racemase; Provisional
Probab=28.59 E-value=49 Score=29.05 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCCCCCchhHhhcCCCCC
Q 026410 167 DIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP 207 (239)
Q Consensus 167 ~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re~d~r~~f~~p 207 (239)
+...+.+++.+++|++.|++..+++..= ..+++..+.+|
T Consensus 62 ~~l~~~~~~L~~~g~~~iviaCNTah~~--~~~l~~~~~iP 100 (230)
T PRK10200 62 DILAEAALGLQRAGAEGIVLCTNTMHKV--ADAIESRCSLP 100 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEECCchHHHH--HHHHHHhCCCC
Confidence 4567888899999999999999999875 57788888888
No 166
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=28.40 E-value=73 Score=28.26 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=29.7
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 026410 164 KKRDIAATLVQRAERNGFKALVLTADTPRLGRRE 197 (239)
Q Consensus 164 ~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re 197 (239)
-.++++.+|++.|.++|++||++-.-.|..|-|+
T Consensus 60 lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~ 93 (217)
T PF02593_consen 60 LHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRR 93 (217)
T ss_pred cCchhHHHHHHHHHHcCCCEEEEecCCCccchHH
Confidence 3678999999999999999999999988866665
No 167
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=28.39 E-value=62 Score=29.50 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred cccccccchHHHHHhhhhccccCCcCCCCCCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhccccccccccc
Q 026410 6 LCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILV 85 (239)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~ 85 (239)
+|.|| |++..+.+-.-|.+==-....+++|+.-.|++.+....-..+-.=-|.-.++.+|.-++..+-+.
T Consensus 102 n~rn~-----~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~----- 171 (258)
T TIGR01362 102 LCRQT-----DLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIM----- 171 (258)
T ss_pred hcchH-----HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHH-----
Q ss_pred CCCCCCcceeecCcccCcceEeccccc-----------hhccCcHHHHHHHHHHhhcCC
Q 026410 86 DVSRIDLSTTILDYKISAPIIIAPTAL-----------HKLANPEGEVATARAAASCNT 133 (239)
Q Consensus 86 dv~~~Dtst~llG~~~s~Pi~iaP~g~-----------~~l~hp~gE~alArAA~~~gi 133 (239)
+++.+||++=|+=. .+ ..+-=..+||||-++|+
T Consensus 172 -------------k~~~~PVi~DpSHsvq~pg~~g~~s~G--~r~~v~~la~AAvA~Ga 215 (258)
T TIGR01362 172 -------------RELGCPVIFDATHSVQQPGGLGGASGG--LREFVPTLARAAVAVGI 215 (258)
T ss_pred -------------HhcCCCEEEeCCccccCCCCCCCCCCC--cHHHHHHHHHHHHHhCC
No 168
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=28.17 E-value=1e+02 Score=21.25 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe
Q 026410 166 RDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~AlvvT 187 (239)
.+...++-++|.+.|++...||
T Consensus 18 ~d~~~~la~kAd~~GA~~y~I~ 39 (56)
T PF07338_consen 18 DDAEEALAKKADEKGAKYYRIT 39 (56)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEE
Confidence 3555788899999999988776
No 169
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=28.14 E-value=1.5e+02 Score=26.57 Aligned_cols=30 Identities=13% Similarity=0.085 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCceeecCCCCCcHHHHHhh
Q 026410 122 VATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (239)
Q Consensus 122 ~alArAA~~~gi~~~lSs~ss~sleeia~~ 151 (239)
..+.+++++.|.|+++|+....+++|+..+
T Consensus 122 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~A 151 (260)
T TIGR01361 122 FELLKEVGKQGKPVLLKRGMGNTIEEWLYA 151 (260)
T ss_pred HHHHHHHhcCCCcEEEeCCCCCCHHHHHHH
Confidence 579999999999999999887789988655
No 170
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=27.65 E-value=1.8e+02 Score=24.91 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCcEEEEeecCC
Q 026410 170 ATLVQRAERNGFKALVLTADTP 191 (239)
Q Consensus 170 ~~li~rAe~aG~~AlvvTVD~p 191 (239)
.++++++.++|.+..+-|||.+
T Consensus 184 ~~~v~~~~~~G~~v~~WTvn~~ 205 (226)
T cd08568 184 VELLRLLRKLGLKIVLWTVNDP 205 (226)
T ss_pred HHHHHHHHHCCCEEEEEcCCCH
Confidence 6889999999999999999976
No 171
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=27.33 E-value=61 Score=25.72 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCCC
Q 026410 168 IAATLVQRAERNGFKALVLTADTPRLG 194 (239)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~~g 194 (239)
..++++++|++.|++.|++|==-...|
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~ 43 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAITDHNNFAG 43 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEEEETTTTT
T ss_pred CHHHHHHHHHHcCCCEEEEcCCccccc
Confidence 357899999999999999985433333
No 172
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=27.18 E-value=1.9e+02 Score=26.12 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCcEEEEeecC
Q 026410 170 ATLVQRAERNGFKALVLTADT 190 (239)
Q Consensus 170 ~~li~rAe~aG~~AlvvTVD~ 190 (239)
.+++++|.++|.+..+-|||.
T Consensus 246 ~~~v~~a~~~Gl~v~~WTvn~ 266 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTFRN 266 (296)
T ss_pred hHHHHHHHHcCCEEEEEEecC
Confidence 588999999999999999997
No 173
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=27.01 E-value=66 Score=29.44 Aligned_cols=103 Identities=16% Similarity=0.071 Sum_probs=0.0
Q ss_pred cccccccchHHHHHhhhhccccCCcCCCCCCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhccccccccccc
Q 026410 6 LCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILV 85 (239)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~ 85 (239)
+|.|| |++..+.+-.-|.+==-.-..+++|+.-.|++.+....-..+-.=-|.-.++.+|.-+|..+-+.-
T Consensus 110 n~rn~-----~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k---- 180 (264)
T PRK05198 110 LCRQT-----DLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMR---- 180 (264)
T ss_pred hcchH-----HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHh----
Q ss_pred CCCCCCcceeecCcccCcceEeccccc-----------hhccCcHHHHHHHHHHhhcCC
Q 026410 86 DVSRIDLSTTILDYKISAPIIIAPTAL-----------HKLANPEGEVATARAAASCNT 133 (239)
Q Consensus 86 dv~~~Dtst~llG~~~s~Pi~iaP~g~-----------~~l~hp~gE~alArAA~~~gi 133 (239)
+...||++=|+=. .+ ..+-=..+||||-++|+
T Consensus 181 --------------~~~lPVi~DpSHsvq~pg~~~~~s~G--~r~~v~~la~AAvA~Ga 223 (264)
T PRK05198 181 --------------ETGAPVIFDATHSVQLPGGQGGSSGG--QREFVPVLARAAVAVGV 223 (264)
T ss_pred --------------hCCCCEEEeCCccccCCCCCCCCCCC--cHHHHHHHHHHHHHcCC
No 174
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=26.96 E-value=2.4e+02 Score=25.90 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=56.1
Q ss_pred CcccCcceEeccccchhcc----CcHHH--HHHHHHHhhcCCceeecCCCC--CcHHHHHhhcCCceeEEEEee---c--
Q 026410 98 DYKISAPIIIAPTALHKLA----NPEGE--VATARAAASCNTIMVLSFTSS--SSIEEVAASCNAVRFYQLYVF---K-- 164 (239)
Q Consensus 98 G~~~s~Pi~iaP~g~~~l~----hp~gE--~alArAA~~~gi~~~lSs~ss--~sleeia~~~~~~~wfQLy~~---~-- 164 (239)
.+++-||+++=+.....-. |.+.+ .-.+|.+++.|.=++=-.+.. .+++++.+.+|.+ +... +
T Consensus 139 a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~vp----VviaGG~k~~ 214 (265)
T COG1830 139 AHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAACGVP----VVIAGGPKTE 214 (265)
T ss_pred HHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhCCCC----EEEeCCCCCC
Confidence 3677888887554333222 33443 457889999998877666554 6788887776522 2232 1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 026410 165 KRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 165 dr~~~~~li~rAe~aG~~AlvvT 187 (239)
.....+++++.|-++|+..+++.
T Consensus 215 ~~~~~l~~~~~ai~aGa~G~~~G 237 (265)
T COG1830 215 TEREFLEMVTAAIEAGAMGVAVG 237 (265)
T ss_pred ChHHHHHHHHHHHHccCcchhhh
Confidence 44556788899999999987764
No 175
>PRK06361 hypothetical protein; Provisional
Probab=26.94 E-value=67 Score=27.23 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 026410 168 IAATLVQRAERNGFKALVLTADTPR 192 (239)
Q Consensus 168 ~~~~li~rAe~aG~~AlvvTVD~p~ 192 (239)
..++++++|.+.|+++|++|==.+.
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~ 35 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADA 35 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCC
Confidence 3589999999999999999966554
No 176
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.42 E-value=2.3e+02 Score=24.67 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCcEEEEeecCC
Q 026410 169 AATLVQRAERNGFKALVLTADTP 191 (239)
Q Consensus 169 ~~~li~rAe~aG~~AlvvTVD~p 191 (239)
..++++++.++|.+-.+-|||.+
T Consensus 207 ~~~~v~~~~~~g~~v~~wTvn~~ 229 (256)
T cd08601 207 DPWMVHLIHKKGLLVHPYTVNEK 229 (256)
T ss_pred CHHHHHHHHHCCCEEEEEecCCH
Confidence 35778888888888888888763
No 177
>PRK03732 hypothetical protein; Provisional
Probab=26.36 E-value=80 Score=25.25 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCC
Q 026410 166 RDIAATLVQRAERNGFKALV-LTADTP 191 (239)
Q Consensus 166 r~~~~~li~rAe~aG~~Alv-vTVD~p 191 (239)
++...++.++|++.|+.||+ |.+|..
T Consensus 66 ~~A~~rm~~~A~~lGAnAVVgvr~d~s 92 (114)
T PRK03732 66 EEALRRMALHAKELGANAVVNFRFATS 92 (114)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeh
Confidence 34558899999999999986 455543
No 178
>PRK11633 cell division protein DedD; Provisional
Probab=26.35 E-value=1.5e+02 Score=26.42 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=34.1
Q ss_pred CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 026410 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p 191 (239)
+.++.||=-++|.+..++|..+...+||+|-+..+++.
T Consensus 148 ~~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~~ 185 (226)
T PRK11633 148 KAYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTPV 185 (226)
T ss_pred CcEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeecC
Confidence 45889999999999999999999999999999887643
No 179
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=26.16 E-value=3.8e+02 Score=26.09 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=52.1
Q ss_pred eecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHH-------hh-c-CCceeEEEEee-c
Q 026410 95 TILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA-------AS-C-NAVRFYQLYVF-K 164 (239)
Q Consensus 95 ~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia-------~~-~-~~~~wfQLy~~-~ 164 (239)
++||. ..||+-+||+. ++. ...++.|..++|..-++++.. .++++|. +. . +.+.-+-|... .
T Consensus 8 ~~lgi--ryPii~gpMa~-Gis----s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYGL--RYAYVAGAMAR-GIA----SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhCC--CccEECCcccC-CCC----CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 45554 67999999972 222 347788888898888887654 3555543 32 2 23433344432 3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 026410 165 KRDIAATLVQRAERNGFKALVL 186 (239)
Q Consensus 165 dr~~~~~li~rAe~aG~~Alvv 186 (239)
+.+...++++...+.|.+.+..
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~ 101 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEA 101 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEe
Confidence 4444567788888999976543
No 180
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=26.02 E-value=64 Score=29.29 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=38.6
Q ss_pred CceeEEEEeecCHHH----HHHHHHHHHHc---CCcEEEEeecCCCCCCchhHhhcCCCCC
Q 026410 154 AVRFYQLYVFKKRDI----AATLVQRAERN---GFKALVLTADTPRLGRREADIKNKMITP 207 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~----~~~li~rAe~a---G~~AlvvTVD~p~~g~Re~d~r~~f~~p 207 (239)
+..|.-|-+-.|... ..+.+++|+.. ||..+-++.|.+...+|-.+..-.+-.|
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmP 150 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMP 150 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC
Confidence 445777766665442 35778888877 9988888999999888888875544434
No 181
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=26.01 E-value=4e+02 Score=25.01 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=23.1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 026410 164 KKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (239)
Q Consensus 164 ~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g 194 (239)
-|.+...++++++.++|++.|.+ .|+....
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l-~DT~G~~ 167 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAGADRINI-ADTVGVL 167 (363)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEE-eCCCCcc
Confidence 47888999999999999987544 6776543
No 182
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.95 E-value=1.4e+02 Score=27.11 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=52.0
Q ss_pred HHHHHhhhhccccCCcCCCCCCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCC-----C
Q 026410 15 IDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVS-----R 89 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~-----~ 89 (239)
.|++.++.+-..|.+=-.....+++|++..++.... .|. .++-|.+|...... .
T Consensus 112 ~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~--------~Gn-------------~~i~L~eRg~~~Y~~~~~n~ 170 (250)
T PRK13397 112 FEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQD--------TGK-------------SNIILCERGVRGYDVETRNM 170 (250)
T ss_pred HHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHH--------cCC-------------CeEEEEccccCCCCCccccc
Confidence 355555554433332211224667777666655431 111 14555555544332 2
Q ss_pred CCc-ceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCc
Q 026410 90 IDL-STTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTI 134 (239)
Q Consensus 90 ~Dt-st~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~ 134 (239)
+|+ +...+-+.+..||++.|+ |.....+-=..+++||.++|.-
T Consensus 171 ~dl~ai~~lk~~~~lPVivd~S--Hs~G~r~~v~~~a~AAvA~GAd 214 (250)
T PRK13397 171 LDIMAVPIIQQKTDLPIIVDVS--HSTGRRDLLLPAAKIAKAVGAN 214 (250)
T ss_pred cCHHHHHHHHHHhCCCeEECCC--CCCcccchHHHHHHHHHHhCCC
Confidence 342 223444556789999886 4333333336889999999988
No 183
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=25.46 E-value=1.9e+02 Score=27.49 Aligned_cols=65 Identities=20% Similarity=0.142 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHhhcCCceeecCCCCCcH----HHHHhhcC--CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q 026410 118 PEGEVATARAAASCNTIMVLSFTSSSSI----EEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (239)
Q Consensus 118 p~gE~alArAA~~~gi~~~lSs~ss~sl----eeia~~~~--~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alvv 186 (239)
-.|+.++|+||..+|+-+..+ +..+|- |-+++..+ +..++| ..|.-.....+-=|..+|++++.-
T Consensus 7 ~~GNeAiA~ga~~ag~~~~a~-YPITPsTei~e~la~~~~~~~~~~vq---~E~E~aA~~~a~GAs~aG~Ra~Ta 77 (376)
T PRK08659 7 LQGNEACAEGAIAAGCRFFAG-YPITPSTEIAEVMARELPKVGGVFIQ---MEDEIASMAAVIGASWAGAKAMTA 77 (376)
T ss_pred eehHHHHHHHHHHhCCCEEEE-cCCCChHHHHHHHHHhhhhhCCEEEE---eCchHHHHHHHHhHHhhCCCeEee
Confidence 469999999999999987765 333333 34443333 223444 345555567777777788877654
No 184
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=24.52 E-value=2.5e+02 Score=28.01 Aligned_cols=124 Identities=16% Similarity=0.122 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchhcc
Q 026410 37 NLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLA 116 (239)
Q Consensus 37 ~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~l~ 116 (239)
.++++.+.|++.+..+ -++++=|++....-.+ |+..-++.+ - .....||-|= .
T Consensus 163 ~l~~i~~~A~~~~~~G-ADIIDIG~~st~p~~~------------~v~~~V~~l------~-~~~~~pISID-----T-- 215 (499)
T TIGR00284 163 AEDGIEGLAARMERDG-ADMVALGTGSFDDDPD------------VVKEKVKTA------L-DALDSPVIAD-----T-- 215 (499)
T ss_pred chHHHHHHHHHHHHCC-CCEEEECCCcCCCcHH------------HHHHHHHHH------H-hhCCCcEEEe-----C--
Confidence 3567788888877443 5788777665432111 111111111 0 1113454441 1
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhc--CCceeEEEEee--cCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVF--KKRDIAATLVQRAERNGFKALVLTADTPR 192 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~--~~~~wfQLy~~--~dr~~~~~li~rAe~aG~~AlvvTVD~p~ 192 (239)
-...++++|-++|..++.|-.. ..++++.+.. .+....-+... .+-+...+.+++|+++|.+.|++ | |.
T Consensus 216 ---~~~~v~eaAL~aGAdiINsVs~-~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIl--D-Pg 288 (499)
T TIGR00284 216 ---PTLDELYEALKAGASGVIMPDV-ENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAA--D-PS 288 (499)
T ss_pred ---CCHHHHHHHHHcCCCEEEECCc-cchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEE--e-CC
Confidence 2345667777779888886433 3456654322 12222222222 12267789999999999976555 4 44
Q ss_pred CC
Q 026410 193 LG 194 (239)
Q Consensus 193 ~g 194 (239)
.|
T Consensus 289 lg 290 (499)
T TIGR00284 289 LS 290 (499)
T ss_pred CC
Confidence 45
No 185
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=23.66 E-value=1.9e+02 Score=26.53 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhc--CCceeecCCCCCcH-------HHHHhhcCCceeEEEEe-----ecCHHHHHHHHHHHHHcCCcEEE
Q 026410 120 GEVATARAAASC--NTIMVLSFTSSSSI-------EEVAASCNAVRFYQLYV-----FKKRDIAATLVQRAERNGFKALV 185 (239)
Q Consensus 120 gE~alArAA~~~--gi~~~lSs~ss~sl-------eeia~~~~~~~wfQLy~-----~~dr~~~~~li~rAe~aG~~Alv 185 (239)
+-..+++.+++. .+..++|....... +.+.....+..|.|+|. ..|+++..++.+.+.++|+.+..
T Consensus 38 a~~~~~~~i~~~~Pd~IVViSpHw~~~~~~~~~~~p~~~G~~~~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~~~~ 117 (294)
T cd07372 38 AYERARESIEALKPDVLLVHSPHWITSVGHHFLGVPELSGRSVDPIFPNLFRYDFSMNVDVELAEACCEEGRKAGLVTKM 117 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcccccCeeeecCCcccccccccccccceeeccCCCCCHHHHHHHHHHHHHCCCCeee
Confidence 334555555554 77888887633211 11111112223445543 45999999999999999998875
Q ss_pred Eee
Q 026410 186 LTA 188 (239)
Q Consensus 186 vTV 188 (239)
++.
T Consensus 118 ~~~ 120 (294)
T cd07372 118 MRN 120 (294)
T ss_pred ccC
Confidence 433
No 186
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=23.46 E-value=94 Score=21.39 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=26.1
Q ss_pred HHHHHHHHH-hhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeec-CHHHHHHHHHHH
Q 026410 120 GEVATARAA-ASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFK-KRDIAATLVQRA 176 (239)
Q Consensus 120 gE~alArAA-~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~-dr~~~~~li~rA 176 (239)
-|..+.++. ++.||+..+-+....+. +...+...|.+||+++ |-+..+++|+..
T Consensus 10 ~ea~~i~~~L~~~gI~~~v~~~~~~~~---~g~~g~~~~~~v~V~~~d~~~A~~il~~~ 65 (67)
T PF09413_consen 10 IEAELIKGLLEENGIPAFVKNEHMSGY---AGEPGTGGQVEVYVPEEDYERAREILEEF 65 (67)
T ss_dssp HHHHHHHHHHHHTT--EE--S----SS------S--SSSEEEEEEGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcEEEECCccchh---hcccCccCceEEEECHHHHHHHHHHHHHh
Confidence 455555544 56899999987554444 2223444568999987 445556776653
No 187
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=23.15 E-value=2.9e+02 Score=23.54 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHHHHHhhcCCceeecCCCCCcHHHHHhhcCC-ceeEEEEeecCHH----HHHHHHHHHHHcCCcEEEEe
Q 026410 122 VATARAAASCNTIMVLSFTSSSSIEEVAASCNA-VRFYQLYVFKKRD----IAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 122 ~alArAA~~~gi~~~lSs~ss~sleeia~~~~~-~~wfQLy~~~dr~----~~~~li~rAe~aG~~AlvvT 187 (239)
..+++++.+.|+.. +|-.+..-++++++...- ..+..-+-..+.+ ...+.++.|.++|++.|++.
T Consensus 30 ~~~a~~~~~~G~~~-~~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~ 99 (219)
T cd04729 30 AAMALAAVQGGAVG-IRANGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALD 99 (219)
T ss_pred HHHHHHHHHCCCeE-EEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEe
Confidence 68999999999975 432222233445443211 1110001111101 12457899999999966554
No 188
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=23.14 E-value=3.3e+02 Score=23.25 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCceeecCCCCCcHHHHHhhc--CCceeEEEEeecCHHH--HHHHHHHHHHcCCcEEE
Q 026410 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVFKKRDI--AATLVQRAERNGFKALV 185 (239)
Q Consensus 122 ~alArAA~~~gi~~~lSs~ss~sleeia~~~--~~~~wfQLy~~~dr~~--~~~li~rAe~aG~~Alv 185 (239)
..+++-.+..++|+++ ..+-.+.+++.... +...++|+-+.+.-++ ..++++.|++.|.+..+
T Consensus 135 ~~~~~L~~~~~~pIa~-dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~ 201 (229)
T cd00308 135 EGYAALRRRTGIPIAA-DESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMV 201 (229)
T ss_pred HHHHHHHhhCCCCEEe-CCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEee
Confidence 3445555678899887 66667788875432 4567889988775444 46888999999976544
No 189
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=22.89 E-value=1.2e+02 Score=28.20 Aligned_cols=49 Identities=27% Similarity=0.351 Sum_probs=39.4
Q ss_pred cHHHHHhhcC---CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 144 SIEEVAASCN---AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 144 sleeia~~~~---~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
++.|.+..+| ..+-+|| +...|+...+-++|=++-|++.|+|-=-.|.+
T Consensus 216 pFR~aa~saP~fgDrkcYQl-P~~~R~la~rA~erD~aEGAD~lmVKPg~pyL 267 (340)
T KOG2794|consen 216 PFREAACSAPKFGDRKCYQL-PANSRGLALRARERDVAEGADILMVKPGLPYL 267 (340)
T ss_pred chHHHhhcCcccCCcceeeC-CCchHHHHHHHHHhhhhccCceEEecCCCcHH
Confidence 5666665554 4678899 88899999999999999999999997666655
No 190
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.89 E-value=3.2e+02 Score=25.66 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred cccchhccC--cHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q 026410 109 PTALHKLAN--PEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (239)
Q Consensus 109 P~g~~~l~h--p~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~Alvv 186 (239)
|+|..=+.+ ..-.....+.+.+.++++++.+...-..-+-.+..+-.-|.++- +.++.++++++|+++||+
T Consensus 57 PfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~-------s~~~A~~a~~~GaD~vVa 129 (320)
T cd04743 57 PWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVP-------SPGLLKQFLENGARKFIF 129 (320)
T ss_pred CeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeC-------CHHHHHHHHHcCCCEEEE
No 191
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=22.79 E-value=71 Score=30.10 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=40.9
Q ss_pred CCceeEEEEeecCHHH----HHHHHHHHHHc---CCcEEEEeecCCCCCCchhHhhc
Q 026410 153 NAVRFYQLYVFKKRDI----AATLVQRAERN---GFKALVLTADTPRLGRREADIKN 202 (239)
Q Consensus 153 ~~~~wfQLy~~~dr~~----~~~li~rAe~a---G~~AlvvTVD~p~~g~Re~d~r~ 202 (239)
.+..|.-|-+-.|+.. ..+.+++|+.. ||..+.++.|.|...+|-.+..-
T Consensus 163 ~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~ 219 (326)
T PRK11840 163 GGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGA 219 (326)
T ss_pred cCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCC
Confidence 4567999888766543 36789999988 99999999999999999988844
No 192
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=22.57 E-value=2.9e+02 Score=24.74 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=49.5
Q ss_pred HHHHHhhcCCceeecCCCCCcHHHHHhhcCCceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhH
Q 026410 124 TARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREAD 199 (239)
Q Consensus 124 lArAA~~~gi~~~lSs~ss~sleeia~~~~~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re~d 199 (239)
+++.-...|....+.+-.......+....++..++=+-..+....+.+.++.|++.|++-|.||=.....--+..|
T Consensus 148 ~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad 223 (281)
T COG1737 148 LAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLAD 223 (281)
T ss_pred HHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhc
Confidence 3444555666666655444434333344466566667777777778899999999999999999764443333333
No 193
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=22.56 E-value=3.6e+02 Score=25.84 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCCceeec---CCCCCcHHHHHhhcC----CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q 026410 119 EGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN----AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (239)
Q Consensus 119 ~gE~alArAA~~~gi~~~lS---s~ss~sleeia~~~~----~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvT 187 (239)
.|+.|+|+||..+|+-+..+ |-+|.=+|.+++..+ +..|.|. .|.--....+-=|..+|++++..|
T Consensus 8 ~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~---EsE~aA~~~~~GAs~aGaRa~TaT 80 (394)
T PRK08367 8 KANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKV---ESEHSAISACVGASAAGVRTFTAT 80 (394)
T ss_pred cHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEe---CCHHHHHHHHHHHHhhCCCeEeee
Confidence 69999999999999887654 122222344544332 3456665 455555777788888898876555
No 194
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.43 E-value=4.1e+02 Score=24.34 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCceeecCCCCCcHHHHHhhc--CCceeEEEEeecCHHHH--HHHHHHHHHcCCcEE
Q 026410 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVFKKRDIA--ATLVQRAERNGFKAL 184 (239)
Q Consensus 122 ~alArAA~~~gi~~~lSs~ss~sleeia~~~--~~~~wfQLy~~~dr~~~--~~li~rAe~aG~~Al 184 (239)
..+++-+++.++|++++- +-.+++++.... +...++|+.+.+--+++ .++.+.|++.|.+..
T Consensus 218 ~~~~~l~~~~~~pia~dE-s~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~ 283 (354)
T cd03317 218 IDHAELQKLLKTPICLDE-SIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVW 283 (354)
T ss_pred HHHHHHHhhcCCCEEeCC-ccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEE
Confidence 456666778899988764 667888887654 34568899887654444 788999999998754
No 195
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=21.98 E-value=1.5e+02 Score=28.04 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=25.6
Q ss_pred cCHHHHHHHHHHH---HHcCCcEEEEeecCCCCCCchhHhhcCCCCC
Q 026410 164 KKRDIAATLVQRA---ERNGFKALVLTADTPRLGRREADIKNKMITP 207 (239)
Q Consensus 164 ~dr~~~~~li~rA---e~aG~~AlvvTVD~p~~g~Re~d~r~~f~~p 207 (239)
++.+..++++++| ++||+.+|++-.=....+ +.+-....+|
T Consensus 176 r~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~la---~~It~~l~IP 219 (332)
T PLN02424 176 RTAESAVKVVETALALQEAGCFAVVLECVPAPVA---AAITSALQIP 219 (332)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHHHH---HHHHHhCCCC
Confidence 3556567788877 479999999865433322 3344445566
No 196
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.88 E-value=6.5e+02 Score=23.53 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHhCChhhhhhhcCC
Q 026410 36 VNLNEFQELARLALPKMYYDFYAGG 60 (239)
Q Consensus 36 ~~l~D~e~~Ar~~Lp~~~~~Y~~gG 60 (239)
++.+|-.+.|+. |.+.-+++++-|
T Consensus 20 ~s~~~k~~ia~~-L~~~Gv~~IEvG 43 (365)
T TIGR02660 20 FTAAEKLAIARA-LDEAGVDELEVG 43 (365)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEEe
Confidence 788888888876 556667777765
No 197
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=21.75 E-value=1.1e+02 Score=29.67 Aligned_cols=32 Identities=16% Similarity=-0.037 Sum_probs=27.4
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 162 VFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 162 ~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
++..|....+++++.+++|.++|.++|.-...
T Consensus 78 wp~pr~~~A~Ll~kL~a~qp~aIgLDi~r~~P 109 (400)
T COG4252 78 WPWPRAALARLLDKLAAAQPRAIGLDIYRDLP 109 (400)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEEEeecCC
Confidence 45678889999999999999999999965554
No 198
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=21.52 E-value=1e+02 Score=30.82 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=25.8
Q ss_pred eeEEEEeecCHHHH----HHHHHHHHHcCCcEEEEe
Q 026410 156 RFYQLYVFKKRDIA----ATLVQRAERNGFKALVLT 187 (239)
Q Consensus 156 ~wfQLy~~~dr~~~----~~li~rAe~aG~~AlvvT 187 (239)
.|||+|...-++.+ .++++++++.|+..|++|
T Consensus 423 ~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t 458 (538)
T PLN02617 423 AWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLN 458 (538)
T ss_pred eEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 48999997655433 688999999999998887
No 199
>PLN02245 ATP phosphoribosyl transferase
Probab=21.37 E-value=4.6e+02 Score=25.53 Aligned_cols=59 Identities=22% Similarity=0.252 Sum_probs=44.5
Q ss_pred hhcCCceeecCCCCCcHHHHHhh------c-----C-------------CceeEEEEeecCHHHHHHHHHHHHHcCCcEE
Q 026410 129 ASCNTIMVLSFTSSSSIEEVAAS------C-----N-------------AVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (239)
Q Consensus 129 ~~~gi~~~lSs~ss~sleeia~~------~-----~-------------~~~wfQLy~~~dr~~~~~li~rAe~aG~~Al 184 (239)
.+.+-.++.-.....++|++.+. . | ...|+-+...-+++.+.+++++.+++|+..|
T Consensus 299 ~A~~~~~v~~Nvp~~~le~v~~~~~~~~~lPG~~~PTVspl~~~~~~~~~~~w~AV~~vV~~~~v~~~~~~Lk~~GA~~I 378 (403)
T PLN02245 299 RAEGQFTVTANMRGSSAEEVAERVLSQPSLSGLQGPTISPVYCKRDGKVAVDYYAIVICVPKKALYESVQQLRKIGGSGV 378 (403)
T ss_pred hhhcEEEEEecCChhhHHHHHHhhhccccCCCCCCCccccccccccccCCCCEEEEEEEEcHHHHHHHHHHHHHcCCCeE
Confidence 34455566666777788888766 2 2 1158788877788999999999999999999
Q ss_pred EEe
Q 026410 185 VLT 187 (239)
Q Consensus 185 vvT 187 (239)
.|+
T Consensus 379 lV~ 381 (403)
T PLN02245 379 LVS 381 (403)
T ss_pred EEE
Confidence 886
No 200
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=21.34 E-value=91 Score=27.76 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=29.1
Q ss_pred HHHHHHHH-HcCCcEEEEeecCCCCCCchhHhhcCCCCC
Q 026410 170 ATLVQRAE-RNGFKALVLTADTPRLGRREADIKNKMITP 207 (239)
Q Consensus 170 ~~li~rAe-~aG~~AlvvTVD~p~~g~Re~d~r~~f~~p 207 (239)
.+.+++.+ +.|+++||+-++++.. .-...+|..+.+|
T Consensus 50 ~~~~~~L~~~~g~d~ivIaCNTA~a-~~~~~l~~~~~iP 87 (251)
T TIGR00067 50 LELLTFLKERHNIKLLVVACNTASA-LALEDLQRNFDFP 87 (251)
T ss_pred HHHHHHHHHhCCCCEEEEeCchHHH-HHHHHHHHHCCCC
Confidence 45667777 9999999999999863 3366788888787
No 201
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.24 E-value=1e+02 Score=27.51 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCceeecCCCCCcHHHHHhhc------C--Cc---eeEEEEeecCHHHHHHHHHHH
Q 026410 121 EVATARAAASCNTIMVLSFTSSSSIEEVAASC------N--AV---RFYQLYVFKKRDIAATLVQRA 176 (239)
Q Consensus 121 E~alArAA~~~gi~~~lSs~ss~sleeia~~~------~--~~---~wfQLy~~~dr~~~~~li~rA 176 (239)
+..+.+.+++.|.|+++||..+ +++||..+. + .+ +=.+-|+-...+.....|..-
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~s-tl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L 167 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGMS-TLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTL 167 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT---HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHH
T ss_pred CHHHHHHHHHhCCcEEEECCCC-CHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHH
Confidence 4678899999999999998763 577776542 1 21 122346655555555555444
No 202
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=21.20 E-value=1e+02 Score=28.09 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=27.5
Q ss_pred CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (239)
Q Consensus 154 ~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~ 193 (239)
+..-||+| +++.+....+++.|.+|||.. .|-||-|-.
T Consensus 154 ~raV~QfY-pen~~q~d~i~~~a~~aGF~G-GlvVd~Pes 191 (270)
T KOG1541|consen 154 ARAVLQFY-PENEAQIDMIMQQAMKAGFGG-GLVVDWPES 191 (270)
T ss_pred ceeEEEec-ccchHHHHHHHHHHHhhccCC-ceeeecccc
Confidence 45678988 456666788889999999855 445677644
No 203
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=21.00 E-value=3.1e+02 Score=22.74 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcCCceeec--CC-CCCcHHHHHhhcCCc-eeEE--------EEeecCHHHHHHHHHHHHHcCCcEEEE
Q 026410 119 EGEVATARAAASCNTIMVLS--FT-SSSSIEEVAASCNAV-RFYQ--------LYVFKKRDIAATLVQRAERNGFKALVL 186 (239)
Q Consensus 119 ~gE~alArAA~~~gi~~~lS--s~-ss~sleeia~~~~~~-~wfQ--------Ly~~~dr~~~~~li~rAe~aG~~Alvv 186 (239)
..|..+++.-.+.|-..+=+ |. |..++-||.+-.++. .-+- ||+ +++.++.|+.-|+..|.++++
T Consensus 8 ~~EReLv~~L~e~GfAvvR~paSG~sk~p~pDivA~~g~~~l~iE~K~~~~~kiYl--~~e~ve~L~~FA~~fGg~p~i- 84 (137)
T COG1591 8 RFERELVRILWERGFAVVRAPASGGSKRPLPDIVAGNGGVYLAIEVKSRRETKIYL--DKEQVEKLVEFARRFGGEPYI- 84 (137)
T ss_pred hHHHHHHHHHHhcCceEEEcccCCCCCCCCCCEEecCCCEEEEEEEEeccCCcEEE--cHHHHHHHHHHHHHcCCceEE-
Confidence 57999999999999888877 54 556677876554432 2222 333 778899999999999998753
Q ss_pred eecCCCCCCc
Q 026410 187 TADTPRLGRR 196 (239)
Q Consensus 187 TVD~p~~g~R 196 (239)
.|=.+.-+||
T Consensus 85 avKf~~~~wr 94 (137)
T COG1591 85 AVKFPGVGWR 94 (137)
T ss_pred EEEeCCCceE
Confidence 4444444444
No 204
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=20.82 E-value=5.4e+02 Score=22.07 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHhCChhhhhhhcCCccc
Q 026410 36 VNLNEFQELARLALPKMYYDFYAGGAED 63 (239)
Q Consensus 36 ~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~d 63 (239)
++.++..+.++.-. +.-.++++-|.+.
T Consensus 16 ~s~e~~~~i~~~L~-~~GV~~IEvg~~~ 42 (265)
T cd03174 16 FSTEDKLEIAEALD-EAGVDSIEVGSGA 42 (265)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEeccCc
Confidence 46777777666633 3345666544433
No 205
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.80 E-value=6.1e+02 Score=22.65 Aligned_cols=80 Identities=16% Similarity=0.049 Sum_probs=47.8
Q ss_pred EeccccchhccCcHHHHHHHHHHhhcCCce--eecC---CCCCcHHHHH-------hhcCCceeEEEEeecCHHHHHHHH
Q 026410 106 IIAPTALHKLANPEGEVATARAAASCNTIM--VLSF---TSSSSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLV 173 (239)
Q Consensus 106 ~iaP~g~~~l~hp~gE~alArAA~~~gi~~--~lSs---~ss~sleeia-------~~~~~~~wfQLy~~~dr~~~~~li 173 (239)
++.|+-- +-.+.++=..+++-..+.|+-- +.|| +.+.|.||-. +.. +...+++- ..+-+.+.++.
T Consensus 8 ~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~vi~gvg-~~~~~~ai~~a 84 (279)
T cd00953 8 VITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-DKVIFQVG-SLNLEESIELA 84 (279)
T ss_pred eecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-CCEEEEeC-cCCHHHHHHHH
Confidence 3567543 3345666667777777777543 3344 3345566532 222 22233432 23556778899
Q ss_pred HHHHHcCCcEEEEee
Q 026410 174 QRAERNGFKALVLTA 188 (239)
Q Consensus 174 ~rAe~aG~~AlvvTV 188 (239)
+.|+++|+++++++.
T Consensus 85 ~~a~~~Gad~v~v~~ 99 (279)
T cd00953 85 RAAKSFGIYAIASLP 99 (279)
T ss_pred HHHHHcCCCEEEEeC
Confidence 999999999999876
No 206
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=20.78 E-value=2.1e+02 Score=26.64 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=24.8
Q ss_pred ceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecC
Q 026410 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT 190 (239)
Q Consensus 155 ~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~ 190 (239)
+.|.=|-+.-+.+...++++.++++|+++|+++=-.
T Consensus 213 PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 213 PLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 444444333344457889999999999999997543
No 207
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=20.73 E-value=2.9e+02 Score=25.08 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHHHH---HcCCcEEEEeecCCCCCCchhHhhcCCCCC
Q 026410 164 KKRDIAATLVQRAE---RNGFKALVLTADTPRLGRREADIKNKMITP 207 (239)
Q Consensus 164 ~dr~~~~~li~rAe---~aG~~AlvvTVD~p~~g~Re~d~r~~f~~p 207 (239)
++.+...++++||+ +||+.+|++-.=..- =-+.+.....+|
T Consensus 155 rt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~~---~~~~i~~~l~iP 198 (264)
T PRK00311 155 RDEEAAEKLLEDAKALEEAGAFALVLECVPAE---LAKEITEALSIP 198 (264)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHH---HHHHHHHhCCCC
Confidence 45555678888885 799999998532211 223344455666
No 208
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=20.66 E-value=99 Score=28.86 Aligned_cols=42 Identities=36% Similarity=0.442 Sum_probs=0.0
Q ss_pred CcceeecCcccCcceEeccccchhccCcHHHHHHHHHHhhcCCcee
Q 026410 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMV 136 (239)
Q Consensus 91 Dtst~llG~~~s~Pi~iaP~g~~~l~hp~gE~alArAA~~~gi~~~ 136 (239)
+++++++|.++.-||++|. +....++|...+.++..+|-..+
T Consensus 1 ~l~~~~~Gl~f~NPl~lAa----G~~~~~~~~~~~~~~~g~G~i~~ 42 (310)
T COG0167 1 DLSTEILGLKFPNPLGLAA----GFDGKNGEELDALAALGFGAIVT 42 (310)
T ss_pred CCceeecceecCCCCeEcc----cCCccCHHHHHHHHhcCCceEEe
No 209
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.60 E-value=4.3e+02 Score=21.45 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhc----CC-ceeEEEEeecCHHHHHHHHHHHHHcCCcE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC----NA-VRFYQLYVFKKRDIAATLVQRAERNGFKA 183 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~----~~-~~wfQLy~~~dr~~~~~li~rAe~aG~~A 183 (239)
|--|-.-+++..+++|.-.+-- ....|.|++.+++ +. +.--.|. -.......+++++.++.|...
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~L-G~~v~~e~~v~aa~~~~adiVglS~l~-~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNL-GVLSPQEEFIKAAIETKADAILVSSLY-GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEeccc-ccCHHHHHHHHHHHHHCCCCC
Confidence 5545555566666665544332 1224556655443 11 1111111 223444566666666666533
No 210
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.59 E-value=4.5e+02 Score=21.23 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=12.8
Q ss_pred HHHHHHhhcCC-ceeecCCCCCcHHH
Q 026410 123 ATARAAASCNT-IMVLSFTSSSSIEE 147 (239)
Q Consensus 123 alArAA~~~gi-~~~lSs~ss~slee 147 (239)
..+++|.+.+. ..++|+..+++++.
T Consensus 41 ~~v~aa~~~~adiVglS~L~t~~~~~ 66 (128)
T cd02072 41 EFIDAAIETDADAILVSSLYGHGEID 66 (128)
T ss_pred HHHHHHHHcCCCEEEEeccccCCHHH
Confidence 44555555555 34455555555443
No 211
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.31 E-value=6.6e+02 Score=22.86 Aligned_cols=72 Identities=7% Similarity=-0.028 Sum_probs=40.2
Q ss_pred cCcHHHHHHHHHHhhcCCcee--ecC---CCCCcHHHHH-------hhcCC--ceeEEEEeecCHHHHHHHHHHHHHcCC
Q 026410 116 ANPEGEVATARAAASCNTIMV--LSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIAATLVQRAERNGF 181 (239)
Q Consensus 116 ~hp~gE~alArAA~~~gi~~~--lSs---~ss~sleeia-------~~~~~--~~wfQLy~~~dr~~~~~li~rAe~aG~ 181 (239)
.+.++=..+++-..+.|+--+ .|| +.+.|.||-. +..++ +-..++- ..+-+.+.++.+.|+++|+
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~-~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT-TLNTRDTIARTRALLDLGA 104 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec-cCCHHHHHHHHHHHHHhCC
Confidence 345555566666666665433 333 2344555522 22222 2222321 1245667888888889999
Q ss_pred cEEEEee
Q 026410 182 KALVLTA 188 (239)
Q Consensus 182 ~AlvvTV 188 (239)
++++|+-
T Consensus 105 d~vlv~~ 111 (309)
T cd00952 105 DGTMLGR 111 (309)
T ss_pred CEEEECC
Confidence 9988886
No 212
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=20.22 E-value=2.2e+02 Score=26.20 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=25.0
Q ss_pred ceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEee
Q 026410 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (239)
Q Consensus 155 ~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTV 188 (239)
+.|.-|-+..+.+...++++.++++|+++|.++-
T Consensus 204 Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 204 PLLVKIAPDLSDEELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEC
Confidence 4565554434445678889999999999998874
No 213
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=20.08 E-value=1.4e+02 Score=27.07 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=29.2
Q ss_pred EEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhH
Q 026410 160 LYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREAD 199 (239)
Q Consensus 160 Ly~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~g~Re~d 199 (239)
||++.++. +++++|..+|++++++++--.+.......
T Consensus 7 LfvP~~~~---~~~~ka~~~gaD~vilDLEDav~~~~k~~ 43 (288)
T TIGR01588 7 MFVPGNNP---AMISDAFIYGADSVMFDLEDAVSLAEKDS 43 (288)
T ss_pred eecCCCCH---HHHHhhhhcCCCEEEEecccCCCcchHHH
Confidence 89998875 56688999999999999987776444444
No 214
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.08 E-value=4.4e+02 Score=23.45 Aligned_cols=85 Identities=15% Similarity=0.236 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHHhhcCCceeecCCCCC---cHHHHHhhc--C-CceeEEEEeec----CHHHHHHHHHHHHHcCCcEEEE
Q 026410 117 NPEGEVATARAAASCNTIMVLSFTSSS---SIEEVAASC--N-AVRFYQLYVFK----KRDIAATLVQRAERNGFKALVL 186 (239)
Q Consensus 117 hp~gE~alArAA~~~gi~~~lSs~ss~---sleeia~~~--~-~~~wfQLy~~~----dr~~~~~li~rAe~aG~~Alvv 186 (239)
|.|||+ +|+-.+++|+..+.||..-- .+.++.... + ++ -+-+.. -+....-++.-|...|++-+.+
T Consensus 77 s~DGEl-iA~~l~kfG~~~IRGSs~Kgg~~Alr~l~k~Lk~G~~i---~itpDgPkGp~~~~~~Gii~LA~~sg~pi~pv 152 (214)
T COG2121 77 SRDGEL-IARLLEKFGLRVIRGSSNKGGISALRALLKALKQGKSI---AITPDGPKGPVHKIGDGIIALAQKSGVPIIPV 152 (214)
T ss_pred CcCHHH-HHHHHHHcCceEEeccCCcchHHHHHHHHHHHhCCCcE---EEcCCCCCCCceeccchhhHhhHhcCCCeEEE
Confidence 568886 57888999999999986432 233332221 1 11 011111 1233356788888889888888
Q ss_pred eecCCCCCCchhHhhcCCCCC
Q 026410 187 TADTPRLGRREADIKNKMITP 207 (239)
Q Consensus 187 TVD~p~~g~Re~d~r~~f~~p 207 (239)
.+-+.. -+|++-+ ..+.+|
T Consensus 153 ~~~~sr-~~~lKsW-Dk~~IP 171 (214)
T COG2121 153 GVATSR-CWRLKTW-DKTIIP 171 (214)
T ss_pred EEeeee-eeeeccc-cccccc
Confidence 887766 5666554 456666
Done!