BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026411
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1
Length = 3106
Score = 36.2 bits (82), Expect = 0.23, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 5 VSKSSALSLDVERKRDEEKEKVRVKRKTLEAVLQQCQ---RALELLSNGFDEDDNDVG-- 59
+ K SA++ D K KEK R T +AVL Q + + L+ L +++ + V
Sbjct: 2016 MDKLSAITNDTAAKLQAVKEKAREANDTAKAVLAQVKDLHQNLDGLKQNYNKLADSVAKT 2075
Query: 60 -AVMSDEETSR----EGSSNQRIDREADELCDLLRSRVECPDFLDK 100
AV+ D ++ G+S + +++EAD L D L+ E D L K
Sbjct: 2076 NAVVKDPSKNKIIADAGTSVRNLEQEADRLIDKLKPIKELEDNLKK 2121
>sp|P0CO58|LIPA_CRYNJ Lipoyl synthase, mitochondrial OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CNL04340 PE=3 SV=1
Length = 395
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 36/125 (28%)
Query: 84 LCDLLRSRVECPDFLDKLEYAQLSGPPNNIEEGSSWDMVSDNDLWESGNIDLDREDYVLV 143
C + SR P LD E P N E S W + G I L D
Sbjct: 143 FCSVKTSRAPPP--LDVHE------PENTAEAISRWGL---------GYIVLTSVD---- 181
Query: 144 SEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSKVIYN 203
+D+VDG A +A+ + +KQ PN L EAL+ F+ K G VI+
Sbjct: 182 -RDDLVDGGAAHIASTISKIKQK---APNILVEALTPDFATK-----------GVNVIHT 226
Query: 204 VASWG 208
VAS G
Sbjct: 227 VASSG 231
>sp|P0CO59|LIPA_CRYNB Lipoyl synthase, mitochondrial OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CNBI2500 PE=3
SV=1
Length = 395
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 36/125 (28%)
Query: 84 LCDLLRSRVECPDFLDKLEYAQLSGPPNNIEEGSSWDMVSDNDLWESGNIDLDREDYVLV 143
C + SR P LD E P N E S W + G I L D
Sbjct: 143 FCSVKTSRAPPP--LDVHE------PENTAEAISRWGL---------GYIVLTSVD---- 181
Query: 144 SEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSKVIYN 203
+D+VDG A +A+ + +KQ PN L EAL+ F+ K G VI+
Sbjct: 182 -RDDLVDGGAAHIASTISKIKQK---APNILVEALTPDFATK-----------GVNVIHT 226
Query: 204 VASWG 208
VAS G
Sbjct: 227 VASSG 231
>sp|A7EKZ0|PAN1_SCLS1 Actin cytoskeleton-regulatory complex protein pan1 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=pan1
PE=3 SV=1
Length = 1373
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 2 EIEVSKSSALSLDVERKRDEEKEKVRVKRKTLEAVLQQCQRALELLSNGFDEDDNDVGAV 61
+IE+S LD ++ +EE K+R +++ E ++Q + ++ S G ++ D G
Sbjct: 745 KIEISNDD---LDAPKRLEEENLKIRTEKENNERMVQDVEESVRDFSRGLEDSLKDGGES 801
Query: 62 MSDEETSREGSSNQRIDREA-DELCDLLRS 90
S E R ++ E D + DL RS
Sbjct: 802 SSSEHEKRRWEDGLGVEDEVKDFIFDLQRS 831
>sp|P23229|ITA6_HUMAN Integrin alpha-6 OS=Homo sapiens GN=ITGA6 PE=1 SV=4
Length = 1130
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 130 SGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQL 174
+GN+DLDR Y V+ + D + F + ++++++ +TPN++
Sbjct: 476 AGNMDLDRNSYPDVAVGSLSDSVTIFRSRPVINIQKTITVTPNRI 520
>sp|A6S9N4|PAN1_BOTFB Actin cytoskeleton-regulatory complex protein pan1 OS=Botryotinia
fuckeliana (strain B05.10) GN=pan1 PE=3 SV=1
Length = 1444
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 7 KSSALSLDVERKRDEEKEKVRVKRKTLEAVLQQCQRALELLSNGFDEDDNDVGAVMSDEE 66
++S LD ++ +EE K+R +++ E ++Q + ++ S G ++ D G S E
Sbjct: 809 EASNDDLDAPKRLEEENLKIRTEKENNERMVQDVEESVRDFSRGLEDSLKDGGESSSSEH 868
Query: 67 TSREGSSNQRIDREA-DELCDLLRS 90
R ++ E D + DL RS
Sbjct: 869 EKRRWEDGLGVEDEVKDFIFDLQRS 893
>sp|A9BAK7|TPIS_PROM4 Triosephosphate isomerase OS=Prochlorococcus marinus (strain MIT
9211) GN=tpiA PE=3 SV=1
Length = 243
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 80 EADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIEEGSSWDMVSDNDLWESGNIDLDRED 139
EA+ +C L+R CP+ L ++Y S P NI+E + +SD D G LD E
Sbjct: 180 EANRICGLIRQWANCPEIL--IQYGG-SVKPGNIDEIMA---MSDIDGVLVGGASLDPES 233
Query: 140 YVLVS 144
+ +S
Sbjct: 234 FARIS 238
>sp|P31779|TTHY_LITCT Transthyretin OS=Lithobates catesbeiana PE=1 SV=2
Length = 153
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 75 QRIDREADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIEEGSSWDMVSDNDLWESGNID 134
Q EAD C L+ V+ D + + A+L E SWD++S SG
Sbjct: 23 QGTHGEADSKCPLM---VKVLDAVRGIPAAKLPVKVFKQNEDKSWDLIS------SGTTS 73
Query: 135 LDREDYVLVSEEDIVDGI 152
D E + L +EE V+GI
Sbjct: 74 SDGEIHNLATEEQFVEGI 91
>sp|Q1HKZ5|M3K13_MOUSE Mitogen-activated protein kinase kinase kinase 13 OS=Mus musculus
GN=Map3k13 PE=2 SV=1
Length = 959
Score = 30.8 bits (68), Expect = 9.6, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 5 VSKSSALSLDVERKRDEEKEKVRVKRKTLEAVLQQCQRALELLSNGFDEDDNDVGAVMSD 64
+ KS S + E + D E E R +R + Q S F D + G SD
Sbjct: 802 LQKSGDDSSEEEGEVDSEVEFPRRQRP--HRCISSYQSYSTFSSENFSVSDGEEGNT-SD 858
Query: 65 EETSREGSSNQRIDREADELCDLLRSRVECP 95
S + S+N+R DR A+ L DLL E P
Sbjct: 859 HSNSPDESANRRQDRLAETLDDLLSQTPEAP 889
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,027,935
Number of Sequences: 539616
Number of extensions: 3508714
Number of successful extensions: 10661
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 10627
Number of HSP's gapped (non-prelim): 92
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)