Query 026411
Match_columns 239
No_of_seqs 45 out of 47
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 12:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rg8_A Programmed cell death p 46.2 9.8 0.00034 31.0 2.2 48 147-198 101-163 (165)
2 2qgu_A Probable signal peptide 36.0 57 0.0019 27.3 5.4 30 154-185 75-104 (211)
3 3ff5_A PEX14P, peroxisomal bio 34.1 17 0.00059 25.5 1.6 17 165-181 38-54 (54)
4 1c52_A Cytochrome-C552; electr 32.6 26 0.0009 26.2 2.5 38 143-182 75-116 (131)
5 2w84_A Peroxisomal membrane pr 31.2 25 0.00085 26.0 2.1 17 165-181 43-59 (70)
6 2ja9_A Exosome complex exonucl 30.2 37 0.0013 28.1 3.2 45 136-184 128-172 (175)
7 2k9l_A RNA polymerase sigma fa 29.9 21 0.00071 25.5 1.5 32 134-180 40-71 (76)
8 2yky_A Beta-transaminase; tran 33.5 13 0.00044 34.4 0.0 81 148-230 39-131 (465)
9 3eiq_C Programmed cell death p 24.2 74 0.0025 29.1 4.4 52 147-198 145-207 (358)
10 4ao9_A Beta-phenylalanine amin 23.9 25 0.00086 32.6 1.2 78 148-230 26-118 (454)
11 2k9m_A RNA polymerase sigma fa 22.7 35 0.0012 26.9 1.7 33 133-180 30-62 (130)
12 2qv0_A Protein MRKE; structura 22.2 65 0.0022 22.6 2.9 32 166-197 109-140 (143)
13 2zu6_B Programmed cell death p 22.1 46 0.0016 29.6 2.6 48 147-198 94-156 (307)
14 3mxn_A RECQ-mediated genome in 21.9 52 0.0018 27.5 2.6 21 28-48 101-121 (157)
15 1x4q_A U4/U6 small nuclear rib 21.5 88 0.003 23.5 3.7 39 152-196 37-75 (92)
16 1jy2_P Fibrinogen gamma-B chai 21.1 41 0.0014 23.4 1.5 14 150-163 23-36 (48)
17 3o60_A LIN0861 protein; PSI, M 21.0 1.2E+02 0.0042 23.3 4.5 37 147-186 148-184 (185)
18 2o60_B CAM, peptide correspond 20.8 74 0.0025 19.1 2.5 19 221-239 7-25 (26)
19 2qk1_A Protein STU2; STU2P, XM 20.3 2.5E+02 0.0084 23.2 6.6 63 147-237 161-224 (249)
No 1
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=46.16 E-value=9.8 Score=30.98 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHhccccccCCChH------------HHHHHHHHHHhhh---hhhhhhhhhhccc
Q 026411 147 DIVDGIACFMAAYLLSLKQAKNLTPN------------QLQEALSKTFSVK---KRKGKLRKAWDGS 198 (239)
Q Consensus 147 DIVDGIA~FmA~yIlSlpkAK~ltP~------------qLQkALskafs~~---krkgKlrk~Wd~g 198 (239)
++.+-+|.|+|++|... -++|. +-+++|.+|-+-+ +--.|+.+.|.+|
T Consensus 101 ~a~~~la~fiarav~d~----~l~~~~l~~~~~~~~~~~~~~~l~~a~~ll~~~~~~~~~~~~Wg~g 163 (165)
T 2rg8_A 101 RAPQLVGQFIARAVGDG----ILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSG 163 (165)
T ss_dssp THHHHHHHHHHHHHHTT----SSCTTHHHHTTTTCCCHHHHHHHHHHHHHHHTC-------------
T ss_pred chHHHHHHHHHHHHHcC----CCCHHHHHHHHhccCchHHHHHHHHHHHHHhccccHHHHHhhcCCC
Confidence 57788999999998763 33333 4445566555333 2246788888765
No 2
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=36.00 E-value=57 Score=27.26 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=24.3
Q ss_pred HHHHHHHhccccccCCChHHHHHHHHHHHhhh
Q 026411 154 CFMAAYLLSLKQAKNLTPNQLQEALSKTFSVK 185 (239)
Q Consensus 154 ~FmA~yIlSlpkAK~ltP~qLQkALskafs~~ 185 (239)
..||++.+- +.-+.+||+| |+.+.++|+..
T Consensus 75 ~~~a~~vLG-~~wr~at~~Q-r~~F~~~F~~~ 104 (211)
T 2qgu_A 75 KRTTQIAMG-RFWSQATPEQ-QQQIQDGFKSL 104 (211)
T ss_dssp HHHHHHHHG-GGTTTSCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHh-HhHhhCCHHH-HHHHHHHHHHH
Confidence 468899988 7799999999 56677888765
No 3
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=34.13 E-value=17 Score=25.54 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.3
Q ss_pred cccCCChHHHHHHHHHH
Q 026411 165 QAKNLTPNQLQEALSKT 181 (239)
Q Consensus 165 kAK~ltP~qLQkALska 181 (239)
++|.||.++++.||.++
T Consensus 38 ~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 38 KKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHTTCCHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHcC
Confidence 46899999999999763
No 4
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=32.58 E-value=26 Score=26.15 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=21.7
Q ss_pred eccchhHHHHHHHHHHHHhccc----cccCCChHHHHHHHHHHH
Q 026411 143 VSEEDIVDGIACFMAAYLLSLK----QAKNLTPNQLQEALSKTF 182 (239)
Q Consensus 143 V~eEDIVDGIA~FmA~yIlSlp----kAK~ltP~qLQkALskaf 182 (239)
.+++|| ..|+.||..- ..++ .+..+||++++++-.+.+
T Consensus 75 Lsd~ei-~~l~~Yl~~~-~~~~~~~~~~~~~t~~~v~~~r~~~~ 116 (131)
T 1c52_A 75 LKDEEI-AAVLNHIATA-WGDAKKVKGFKPFTAEEVKKLRAKKL 116 (131)
T ss_dssp SCHHHH-HHHHHHHHHT-TSTGGGSTTCCCCCHHHHHHHTTSCC
T ss_pred CCHHHH-HHHHHHHHHH-cCCccCCCCCCCCCHHHHHHHHhccC
Confidence 466665 4454444432 1221 257899999988765443
No 5
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=31.21 E-value=25 Score=26.00 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.0
Q ss_pred cccCCChHHHHHHHHHH
Q 026411 165 QAKNLTPNQLQEALSKT 181 (239)
Q Consensus 165 kAK~ltP~qLQkALska 181 (239)
+.|.||.+|++.||.++
T Consensus 43 ~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 43 KKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHTTCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHc
Confidence 46899999999999986
No 6
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=30.23 E-value=37 Score=28.13 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=29.8
Q ss_pred CCCCeEEeccchhHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHhh
Q 026411 136 DREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSV 184 (239)
Q Consensus 136 d~e~YVlV~eEDIVDGIA~FmA~yIlSlpkAK~ltP~qLQkALskafs~ 184 (239)
..+|||-|+..+.-+-++ ++++|... +..|||+|.++-+.+.|+.
T Consensus 128 G~NG~IWi~~~~~~~~~~--v~~aI~~~--~~~~~~~~~~~~~~~~~~~ 172 (175)
T 2ja9_A 128 GLNGKIWVKCEELSNTLA--CYRTIMEC--CQKNDTAAFKDIAKRQFKE 172 (175)
T ss_dssp ETTTEEEEECSSHHHHHH--HHHHHHHH--HHHCCGGGHHHHHHHHTTT
T ss_pred ECCcEEEEecCCHHHHHH--HHHHHHHH--hccCCHHHHHHHHHHHHHH
Confidence 356777777666633332 44555432 3779999999999988754
No 7
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=29.91 E-value=21 Score=25.48 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCCCCCeEEeccchhHHHHHHHHHHHHhccccccCCChHHHHHHHHH
Q 026411 134 DLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSK 180 (239)
Q Consensus 134 g~d~e~YVlV~eEDIVDGIA~FmA~yIlSlpkAK~ltP~qLQkALsk 180 (239)
.+|++||.-.+-++|.+.+ .++++++.++|..
T Consensus 40 ~LD~~GYL~~~l~eia~~l---------------~~~~~eve~vL~~ 71 (76)
T 2k9l_A 40 YLNEKGFLSKSVEEISDVL---------------RCSVEELEKVRQK 71 (76)
T ss_dssp HCTTSSTTCCCHHHHHHHH---------------TSCHHHHHHHHHH
T ss_pred hcCCCCCCCCCHHHHHHHc---------------CCCHHHHHHHHHH
Confidence 4789999999988887654 2899999998864
No 8
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=33.45 E-value=13 Score=34.42 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHhccccccCCChHHHHHHHH-------HHHh---hhhhhhhhhhhhc--ccceEeeehhhhhhHHHhh
Q 026411 148 IVDGIACFMAAYLLSLKQAKNLTPNQLQEALS-------KTFS---VKKRKGKLRKAWD--GSKVIYNVASWGATAVGIY 215 (239)
Q Consensus 148 IVDGIA~FmA~yIlSlpkAK~ltP~qLQkALs-------kafs---~~krkgKlrk~Wd--~gKviY~~aSWg~ta~GlY 215 (239)
+-+-++.++++|....|+++.|--. -++.+- ++|. -.-.+|+=..+|| |-+.|=-.+.|+...+| |
T Consensus 39 ~~~~~~~~~~~~~~~~~~s~~l~~~-~~~~~~~g~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lG-h 116 (465)
T 2yky_A 39 KAQAIAAARNTFARDNPVSAGHHER-ARRSMPGGNTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFG-H 116 (465)
Confidence 4556788888888888887766432 223332 1121 1123466677884 55666667888888888 8
Q ss_pred cCHHHHHHHHHHHHH
Q 026411 216 QNPVILRAASKAFWT 230 (239)
Q Consensus 216 qNp~ilk~A~ka~~t 230 (239)
.+|.|.+++.+++-.
T Consensus 117 ~~p~V~~Av~~q~~~ 131 (465)
T 2yky_A 117 SHPVIRAAVERALAV 131 (465)
Confidence 999999998776543
No 9
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.21 E-value=74 Score=29.08 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhc-------ccccc-CCChHHHHHHHHHH---Hhhhhhhhhhhhhhccc
Q 026411 147 DIVDGIACFMAAYLLS-------LKQAK-NLTPNQLQEALSKT---FSVKKRKGKLRKAWDGS 198 (239)
Q Consensus 147 DIVDGIA~FmA~yIlS-------lpkAK-~ltP~qLQkALska---fs~~krkgKlrk~Wd~g 198 (239)
++.+-+|.|+||.|.. +.+.+ .+.+..-..||.+| ++..+--.++.++|..|
T Consensus 145 ~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g 207 (358)
T 3eiq_C 145 RAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSG 207 (358)
T ss_dssp THHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCC
T ss_pred cHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCC
No 10
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=23.89 E-value=25 Score=32.63 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHhhh-------------hhhhhhhhhhcc--cceEeeehhhhhhHH
Q 026411 148 IVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVK-------------KRKGKLRKAWDG--SKVIYNVASWGATAV 212 (239)
Q Consensus 148 IVDGIA~FmA~yIlSlpkAK~ltP~qLQkALskafs~~-------------krkgKlrk~Wd~--gKviY~~aSWg~ta~ 212 (239)
+-..++....+|...+|+++.| .++|-.-.=... =.+|+=-.+||. -+.|=-+++||...+
T Consensus 26 ~~~~~~~~~~~~~~~~p~s~~~----~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~l 101 (454)
T 4ao9_A 26 IDQALADAYRRFTDANPASQRQ----FEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVY 101 (454)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHH----HHHHTTTSGGGCSSGGGCCSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTT
T ss_pred hhhhHHHHHHHHhhcCcHhHHH----HHHHhhhCCCCCCCCccccCCCCccEEEeecCEEEECCCCEEEEccccHHhhcc
Confidence 3456788889999999987643 333332211111 135666678853 344434788998888
Q ss_pred HhhcCHHHHHHHHHHHHH
Q 026411 213 GIYQNPVILRAASKAFWT 230 (239)
Q Consensus 213 GlYqNp~ilk~A~ka~~t 230 (239)
| |.||.|.+++.+++-.
T Consensus 102 G-H~hp~v~~Av~~q~~~ 118 (454)
T 4ao9_A 102 G-HSAPEIRDAVIEAMQG 118 (454)
T ss_dssp C-SCCHHHHHHHHHHHHT
T ss_pred c-CCCHHHHHHHHHHHhc
Confidence 8 8999999999888753
No 11
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=22.67 E-value=35 Score=26.92 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=25.9
Q ss_pred CCCCCCCeEEeccchhHHHHHHHHHHHHhccccccCCChHHHHHHHHH
Q 026411 133 IDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSK 180 (239)
Q Consensus 133 ~g~d~e~YVlV~eEDIVDGIA~FmA~yIlSlpkAK~ltP~qLQkALsk 180 (239)
..+|++||.-++-++|.+.+ .++++++.++|..
T Consensus 30 ~~LD~~GYL~~~l~eia~~l---------------~~~~~eve~vL~~ 62 (130)
T 2k9m_A 30 NYLNEKGFLSKSVEEISDVL---------------RCSVEELEKVRQK 62 (130)
T ss_dssp TSBCTTSSBSSCHHHHHHHT---------------TCCHHHHHHHHHH
T ss_pred HhcCCCCCCCCCHHHHHHHc---------------CCCHHHHHHHHHH
Confidence 45899999999988887654 2788888887764
No 12
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=22.17 E-value=65 Score=22.65 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=19.8
Q ss_pred ccCCChHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 026411 166 AKNLTPNQLQEALSKTFSVKKRKGKLRKAWDG 197 (239)
Q Consensus 166 AK~ltP~qLQkALskafs~~krkgKlrk~Wd~ 197 (239)
.|.++|++|..+|.+.+...++.+....-|++
T Consensus 109 ~KP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 140 (143)
T 2qv0_A 109 LKPYQESRIINMLQKLTTAWEQQNNAAEGHHH 140 (143)
T ss_dssp ESSCCHHHHHHHHHHHHHHHHHC---------
T ss_pred eCCCCHHHHHHHHHHHHHHHHhccchhhccCC
Confidence 36789999999999999877776666655544
No 13
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.10 E-value=46 Score=29.61 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhccccccCCChHHH------------HHHHHHH---Hhhhhhhhhhhhhhccc
Q 026411 147 DIVDGIACFMAAYLLSLKQAKNLTPNQL------------QEALSKT---FSVKKRKGKLRKAWDGS 198 (239)
Q Consensus 147 DIVDGIA~FmA~yIlSlpkAK~ltP~qL------------QkALska---fs~~krkgKlrk~Wd~g 198 (239)
++.+-+|.|+||.|... -++|..| +++|.+| ++..+-..++.+.|..|
T Consensus 94 ~a~~~la~flaraV~d~----~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~ 156 (307)
T 2zu6_B 94 RAPQLVGQFIARAVGDG----ILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSG 156 (307)
T ss_dssp THHHHHHHHHHHHHHTT----SSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCC
T ss_pred chHHHHHHHHHHHHHhC----CCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCC
No 14
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=21.93 E-value=52 Score=27.48 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhh
Q 026411 28 VKRKTLEAVLQQCQRALELLS 48 (239)
Q Consensus 28 ~~r~tl~~vl~~~qrale~l~ 48 (239)
-+|+.|+..|++|||-|.-|+
T Consensus 101 ~~~~~l~e~L~~~Q~~L~dl~ 121 (157)
T 3mxn_A 101 LQYQKFLEGLQKCQRDLIDLC 121 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 556779999999999998874
No 15
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.54 E-value=88 Score=23.47 Aligned_cols=39 Identities=8% Similarity=0.070 Sum_probs=27.6
Q ss_pred HHHHHHHHHhccccccCCChHHHHHHHHHHHhhhhhhhhhhhhhc
Q 026411 152 IACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWD 196 (239)
Q Consensus 152 IA~FmA~yIlSlpkAK~ltP~qLQkALskafs~~krkgKlrk~Wd 196 (239)
+..|+-.++. +...|.+||..|.--+.. ....-+.++|.
T Consensus 37 lVd~i~~~l~-----~~~dpk~l~~~L~~fLd~-~a~~Fv~eLW~ 75 (92)
T 1x4q_A 37 VVTAALNCVG-----KGMDKKKAADHLKPFLDD-STLRFVDKLFE 75 (92)
T ss_dssp HHHHHHHHHH-----TTCCHHHHHHHHTTTTGG-GTHHHHHHHHH
T ss_pred HHHHHHHHHH-----cCCCHHHHHHHHHHHhhh-hHHHHHHHHHH
Confidence 3456666665 566899999999987754 35566777886
No 16
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=21.09 E-value=41 Score=23.36 Aligned_cols=14 Identities=43% Similarity=0.588 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcc
Q 026411 150 DGIACFMAAYLLSL 163 (239)
Q Consensus 150 DGIA~FmA~yIlSl 163 (239)
=|||.|+.+|=.+-
T Consensus 23 CGiadfL~~Yq~~v 36 (48)
T 1jy2_P 23 CGIADFLNNYQTSV 36 (48)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHhcccccch
Confidence 38999999996543
No 17
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=21.02 E-value=1.2e+02 Score=23.26 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHhhhh
Q 026411 147 DIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKK 186 (239)
Q Consensus 147 DIVDGIA~FmA~yIlSlpkAK~ltP~qLQkALskafs~~k 186 (239)
-++-++..++..++...+ .+||+++-+.+....+.+.
T Consensus 148 ~~~~~~~~~i~~W~~~~~---~~s~eei~~~l~~l~~~l~ 184 (185)
T 3o60_A 148 CFARMILSLAAEIQQSNK---DYTNDQLVELIQEAARFLQ 184 (185)
T ss_dssp HHHHHHHHHHHHHHHCSS---CCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHh
Confidence 355666666667776655 4999999998888766553
No 18
>2o60_B CAM, peptide corresponding to calmodulin binding domai neuronal nitric oxide synthase; protein-peptide complex, metal binding protein; 1.55A {Gallus gallus}
Probab=20.80 E-value=74 Score=19.12 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhHHhhhcC
Q 026411 221 LRAASKAFWTSCHVISKLL 239 (239)
Q Consensus 221 lk~A~ka~~ts~rvi~K~l 239 (239)
+|..++|+-.|+++|.|+|
T Consensus 7 fK~la~AV~fss~Lm~kal 25 (26)
T 2o60_B 7 FKKLAEAVKFSAKLMGQXX 25 (26)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 6788899999999998875
No 19
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=20.33 E-value=2.5e+02 Score=23.18 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHhccccccCCChHHHHHHH-HHHHhhhhhhhhhhhhhcccceEeeehhhhhhHHHhhcCHHHHHHHH
Q 026411 147 DIVDGIACFMAAYLLSLKQAKNLTPNQLQEAL-SKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAAS 225 (239)
Q Consensus 147 DIVDGIA~FmA~yIlSlpkAK~ltP~qLQkAL-skafs~~krkgKlrk~Wd~gKviY~~aSWg~ta~GlYqNp~ilk~A~ 225 (239)
.+-.+...|+++|+...|.+ |.+|.+.+ ...+..+.+ -+|| +++.|-.+|.
T Consensus 161 ~vk~~al~~l~~~~~~~~~~----~~~l~~~l~~~iip~l~~-----~l~D-------------------~~~~VR~aA~ 212 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDG----YSTLQRYLKDEVVPIVIQ-----IVND-------------------TQPAIRTIGF 212 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSC----SHHHHHHHTTTHHHHHHH-----HHTC-------------------SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCc----chhHHHHHHHHHHHHHHH-----HhcC-------------------CCHHHHHHHH
Confidence 45667778888888776654 56655555 444433222 1355 2788888888
Q ss_pred HHHHHHhHHhhh
Q 026411 226 KAFWTSCHVISK 237 (239)
Q Consensus 226 ka~~ts~rvi~K 237 (239)
.++.+-|+++.+
T Consensus 213 ~~l~~i~~~vG~ 224 (249)
T 2qk1_A 213 ESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhCH
Confidence 888888888764
Done!