Query 026411
Match_columns 239
No_of_seqs 45 out of 47
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 12:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026411.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026411hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f54a_ a.39.1.5 (A:) Calmodul 42.5 7.1 0.00052 25.3 2.4 21 166-187 1-21 (77)
2 d2np3a2 a.121.1.1 (A:100-211) 34.5 17 0.0012 26.1 3.7 33 152-184 75-107 (112)
3 d2ozba1 d.79.3.1 (A:4-128) Spl 34.3 8.3 0.00061 28.3 1.9 29 163-191 4-32 (125)
4 d1lkja_ a.39.1.5 (A:) Calmodul 33.0 10 0.00074 26.4 2.1 16 166-181 24-39 (146)
5 d1aono_ b.35.1.1 (O:) Chaperon 31.5 7.1 0.00052 27.2 1.0 30 120-149 63-92 (97)
6 d1ppjb1 d.185.1.1 (B:17-235) C 26.9 18 0.0013 27.0 2.7 30 150-181 47-76 (219)
7 d1fc4a_ c.67.1.4 (A:) 2-amino- 24.7 22 0.0016 29.6 3.2 35 193-229 38-73 (401)
8 d3dwya1 a.29.2.1 (A:1084-1197) 24.0 23 0.0016 24.9 2.7 20 169-188 2-21 (114)
9 d1hr6b1 d.185.1.1 (B:24-245) M 23.0 34 0.0025 24.6 3.6 40 149-188 169-212 (222)
10 d2ixta1 c.41.1.1 (A:1-309) Sph 22.8 34 0.0025 26.2 3.7 32 153-187 257-288 (309)
11 d1l8ya_ a.21.1.1 (A:) Nucleola 21.9 25 0.0018 24.9 2.4 34 151-192 18-51 (84)
12 d2alea1 d.79.3.1 (A:1-126) Sma 21.6 19 0.0014 26.4 1.9 29 162-190 4-32 (126)
No 1
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.51 E-value=7.1 Score=25.25 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=16.1
Q ss_pred ccCCChHHHHHHHHHHHhhhhh
Q 026411 166 AKNLTPNQLQEALSKTFSVKKR 187 (239)
Q Consensus 166 AK~ltP~qLQkALskafs~~kr 187 (239)
|++||++|++. +..+|...-+
T Consensus 1 ~~~lt~eqi~e-l~~~F~~~D~ 21 (77)
T d1f54a_ 1 SSNLTEEQIAE-FKEAFALFDK 21 (77)
T ss_dssp CCCCCHHHHHH-HHHHHHHTCT
T ss_pred CCCCCHHHHHH-HHHHHHHHcC
Confidence 67899999985 7788876633
No 2
>d2np3a2 a.121.1.1 (A:100-211) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=34.46 E-value=17 Score=26.13 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHHHHHhccccccCCChHHHHHHHHHHHhh
Q 026411 152 IACFMAAYLLSLKQAKNLTPNQLQEALSKTFSV 184 (239)
Q Consensus 152 IA~FmA~yIlSlpkAK~ltP~qLQkALskafs~ 184 (239)
+...|+|||+-+|--..+++++|.+.++-++..
T Consensus 75 ~Gl~~~Ryvl~~eplas~~~eelv~~laP~lQ~ 107 (112)
T d2np3a2 75 VGLAMMRYVAHLEPLASADTDTVARHYGRAVQA 107 (112)
T ss_dssp HHHHHHHHTSCCTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcccCCCHHHHHHHHHHHHHH
Confidence 445689999999999999999999999988753
No 3
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.28 E-value=8.3 Score=28.32 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=23.8
Q ss_pred cccccCCChHHHHHHHHHHHhhhhhhhhh
Q 026411 163 LKQAKNLTPNQLQEALSKTFSVKKRKGKL 191 (239)
Q Consensus 163 lpkAK~ltP~qLQkALskafs~~krkgKl 191 (239)
+|.|..|++.+|++.+-+.++.-.|.|++
T Consensus 4 ~~~a~P~a~~~l~~kil~ll~~a~~~~~l 32 (125)
T d2ozba1 4 NPKAYPLADAHLTKKLLDLVQQSCNYKQL 32 (125)
T ss_dssp CTTSCSBCCHHHHHHHHHHHHHHHHTTCE
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHcCCc
Confidence 69999999999999998888755555554
No 4
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.97 E-value=10 Score=26.40 Aligned_cols=16 Identities=6% Similarity=0.252 Sum_probs=9.3
Q ss_pred ccCCChHHHHHHHHHH
Q 026411 166 AKNLTPNQLQEALSKT 181 (239)
Q Consensus 166 AK~ltP~qLQkALska 181 (239)
.-.+++++|..+|...
T Consensus 24 ~G~i~~~e~~~~l~~~ 39 (146)
T d1lkja_ 24 NGSISSSELATVMRSL 39 (146)
T ss_dssp SSEEEHHHHHHHHHHH
T ss_pred CCcEeHHHHHHHHHhc
Confidence 4456666666666543
No 5
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}
Probab=31.54 E-value=7.1 Score=27.20 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=19.3
Q ss_pred eEEecCCCcccCCCCCCCCCeEEeccchhH
Q 026411 120 DMVSDNDLWESGNIDLDREDYVLVSEEDIV 149 (239)
Q Consensus 120 d~V~~~d~we~e~~g~d~e~YVlV~eEDIV 149 (239)
|+|.-......+....+++.|++++++||.
T Consensus 63 D~Vl~~~~~g~~~~~~dg~~y~ii~e~dIl 92 (97)
T d1aono_ 63 DIVIFNDGYGVKSEKIDNEEVLIMSESDIL 92 (97)
T ss_dssp CEEEECCCSSCEEEESSSCEEEEEETTTEE
T ss_pred CEEEEecccCceEEEECCEEEEEEEHHHEE
Confidence 444444443333334678899999999985
No 6
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.89 E-value=18 Score=27.05 Aligned_cols=30 Identities=7% Similarity=0.068 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhccccccCCChHHHHHHHHHH
Q 026411 150 DGIACFMAAYLLSLKQAKNLTPNQLQEALSKT 181 (239)
Q Consensus 150 DGIA~FmA~yIlSlpkAK~ltP~qLQkALska 181 (239)
.|||.|+...+.. .++.+|..||++.+.+.
T Consensus 47 ~G~ahlle~l~~~--gt~~~s~~~i~~~~~~~ 76 (219)
T d1ppjb1 47 LGTSHLLRLASSL--TTKGASSFKITRGIEAV 76 (219)
T ss_dssp TTHHHHHHHCTTS--CBSSSCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHhh--ccccchhHHHHHHHHHh
Confidence 4999999886654 89999999999988664
No 7
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=24.69 E-value=22 Score=29.62 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=28.2
Q ss_pred hhhc-ccceEeeehhhhhhHHHhhcCHHHHHHHHHHHH
Q 026411 193 KAWD-GSKVIYNVASWGATAVGIYQNPVILRAASKAFW 229 (239)
Q Consensus 193 k~Wd-~gKviY~~aSWg~ta~GlYqNp~ilk~A~ka~~ 229 (239)
++|+ -||-+.+.+|-.| .|+=++|.|.+++.+|+-
T Consensus 38 ~v~~~dG~~~l~f~s~dY--LGl~~hp~v~~a~~~a~~ 73 (401)
T d1fc4a_ 38 DITVADGSHVINFCANNY--LGLANHPDLIAAAKAGMD 73 (401)
T ss_dssp EEEBTTSCEEEECCCSCT--TSCTTCHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEEEcccc--ccccCCHHHHHHHHHHHH
Confidence 3676 4788888888776 577799999999999874
No 8
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.99 E-value=23 Score=24.94 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=17.3
Q ss_pred CChHHHHHHHHHHHhhhhhh
Q 026411 169 LTPNQLQEALSKTFSVKKRK 188 (239)
Q Consensus 169 ltP~qLQkALskafs~~krk 188 (239)
++|++|+++|.+.+..+.++
T Consensus 2 ~~p~el~~~l~~~l~~l~~~ 21 (114)
T d3dwya1 2 FKPEELRQALMPTLEALYRQ 21 (114)
T ss_dssp CCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 68999999999999888654
No 9
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.01 E-value=34 Score=24.55 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhccc----cccCCChHHHHHHHHHHHhhhhhh
Q 026411 149 VDGIACFMAAYLLSLK----QAKNLTPNQLQEALSKTFSVKKRK 188 (239)
Q Consensus 149 VDGIA~FmA~yIlSlp----kAK~ltP~qLQkALskafs~~krk 188 (239)
.+.|-.|..+|..... =+-+++|+++.+.+.+.|+..+++
T Consensus 169 ~~~l~~f~~~~y~p~n~~l~i~G~~~~~~~~~~i~~~f~~lp~~ 212 (222)
T d1hr6b1 169 RTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKS 212 (222)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhcCccCEEEEEEcCCCHHHHHHHHHHHHhCCCCC
Confidence 4567789999986443 245899999999999999987653
No 10
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}
Probab=22.77 E-value=34 Score=26.19 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=20.7
Q ss_pred HHHHHHHHhccccccCCChHHHHHHHHHHHhhhhh
Q 026411 153 ACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKR 187 (239)
Q Consensus 153 A~FmA~yIlSlpkAK~ltP~qLQkALskafs~~kr 187 (239)
|-.+|-.+.-+| +|||.|++..|..+=.....
T Consensus 257 aG~~Ali~~~~p---~lt~~~v~~~L~~tA~~~~~ 288 (309)
T d2ixta1 257 SGLAAKIWAENP---SLSNTQLRSNLQERAKSVDI 288 (309)
T ss_dssp HHHHHHHHHHST---TCCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHCC---CCCHHHHHHHHHhhCccCCC
Confidence 333443344444 79999999999887654433
No 11
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.87 E-value=25 Score=24.95 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhccccccCCChHHHHHHHHHHHhhhhhhhhhh
Q 026411 151 GIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLR 192 (239)
Q Consensus 151 GIA~FmA~yIlSlpkAK~ltP~qLQkALskafs~~krkgKlr 192 (239)
-|+.|+|+|=..-.+| |+|+--|..+|.||.|+.
T Consensus 18 vIgdYlA~fk~DR~Ka--------qkaMeatW~~meKkEki~ 51 (84)
T d1l8ya_ 18 VIGDYLARFKNDRVKA--------LKAMEMTWNNMEKKEKLM 51 (84)
T ss_dssp HHHHHHHHTTSTHHHH--------HHHHHHHHHTTGGGHHHH
T ss_pred HHHHHHHHHHhhHHHH--------HHHHHHHHHhhhhhhhhH
Confidence 3788999987766554 899999999999998873
No 12
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=21.59 E-value=19 Score=26.35 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=23.7
Q ss_pred ccccccCCChHHHHHHHHHHHhhhhhhhh
Q 026411 162 SLKQAKNLTPNQLQEALSKTFSVKKRKGK 190 (239)
Q Consensus 162 SlpkAK~ltP~qLQkALskafs~~krkgK 190 (239)
-+|.|.-|.+++|++.+-+.+..-.|.|+
T Consensus 4 ~~~~a~P~a~~~l~~~i~~ll~~a~~~~~ 32 (126)
T d2alea1 4 PNPKAFPLADAALTQQILDVVQQAANLRQ 32 (126)
T ss_dssp CCTTCCSBCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 37999999999999999888875555555
Done!