BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026412
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLD 81
D V+VL + NF + + + LVEFYAPWCGHCK LAP Y K A E ++ +A +D
Sbjct: 7 DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66
Query: 82 ADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTS 133
A + DLA++YGV G+PT+KFF G+ +EY GR+ +D V+++ ++ G +
Sbjct: 67 ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 3/103 (2%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+DDV+ LT NF +EV Q G LVEFYAPWCGHC+ L P ++K A A L+D V V +
Sbjct: 16 SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATA--LKDVVKVGAV 73
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 123
+ADK++ L +YGV GFPT+K F E+Y GGR E V
Sbjct: 74 NADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 116
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 14/117 (11%)
Query: 24 DVVVLTEDNFEKEVGQDRGA----LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 79
DV+ LT+DNFE + D G+ LVEF+APWCGHCK LAP YE AAA L+ V +A
Sbjct: 2 DVLELTDDNFESRI-SDTGSAGLMLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLAK 58
Query: 80 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE---YGGGRDLEDFVSFINEKCGTS 133
+D + KYGVSG+PTLK F +DGEE Y G R + VS + ++ G +
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVSHLKKQAGPA 111
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 25 VVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
V V+ +NF++ V +++ L+EFYAPWCGHCKNL P Y+++ + + ++V+A +DA
Sbjct: 354 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 413
Query: 84 KYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFI 126
D+ Y V GFPT+ F P K + ++Y GGR+L DF+S++
Sbjct: 414 A-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYL 456
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 68/116 (58%), Gaps = 12/116 (10%)
Query: 24 DVVVLTEDNFEKEVGQDRGA---LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
DV+ LT+DNFE + A LVEF+APWCGH K LAP YE AAA L+ V +A +
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYE--AAATRLKGIVPLAKV 59
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE---YGGGRDLEDFVSFINEKCGTS 133
D + KYGVSG+PTLK F +DGEE Y G R + VS + ++ G +
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVSHLKKQAGPA 111
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 25 VVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
V V+ +NF++ V +++ L+EFYAPWCGHCKNL P Y+++ + + ++V+A +DA
Sbjct: 29 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 88
Query: 84 KYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFI 126
D+ Y V GFPT+ F P K + ++Y GGR+L DF+S++
Sbjct: 89 A-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYL 131
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDADK 84
+VLT++NF++ V LVEFYAPWCGHCK LAP YEK A + + +A +DA
Sbjct: 133 LVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA 192
Query: 85 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133
DLA+++ VSG+PTLK F KG +Y G R+ V ++ E+ G +
Sbjct: 193 ETDLAKRFDVSGYPTLKIFRKGRP--YDYNGPREKYGIVDYMIEQSGAA 239
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDAD 83
V+VL + NF+ V L+EFYAPWCGHCK AP YEK+A +D + VA +DA
Sbjct: 17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT 76
Query: 84 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
LA ++ VSG+PT+K KG +Y G R E+ V+ + E
Sbjct: 77 SASVLASRFDVSGYPTIKILKKGQ--AVDYEGSRTQEEIVAKVRE 119
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDAD 83
+ LT+DNF+ V LVEFYAPWCGHCK LAP YEK A + + +A +DA
Sbjct: 9 TLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 68
Query: 84 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 132
+ DLA+++ VSG+PTLK F KG +Y G R+ V ++ E+ G+
Sbjct: 69 EQTDLAKRFDVSGYPTLKIFRKGRP--FDYNGPREKYGIVDYMIEQSGS 115
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---VVVANLD 81
V VL + NF+ V L+EFYAPWCGHCK AP YEK+A+ TL+D+ + VA +D
Sbjct: 19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIAS--TLKDNDPPIAVAKID 76
Query: 82 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLT 141
A LA K+ VSG+PT+K KG +Y G R E+ V+ + E ++T
Sbjct: 77 ATSASMLASKFDVSGYPTIKILKKGQ--AVDYDGSRTQEEIVAKVREVSQPDWTPPPEVT 134
Query: 142 S 142
S
Sbjct: 135 S 135
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 20 ALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVA 78
L V+ LTE+NF+ + + ++FYAPWCGHCK LAPT+E+++ F V +A
Sbjct: 2 PLGSTVLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIA 60
Query: 79 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
+D +++ KY V G+PTL F +G K E+ GGRDL+ F+
Sbjct: 61 EVDCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 107
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 19 SALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVV 77
S + V+ LTE+NF+ + + ++FYAPWCGHCK LAPT+E+++ F V +
Sbjct: 3 SGSSGTVLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKI 61
Query: 78 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
A +D +++ KY V G+PTL F +G K E+ GGRDL+ F+
Sbjct: 62 AEVDCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 109
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVANLDAD 83
V+ LTE+NF+ + + ++FYAPWCGHCK LAPT+E+++ F V +A +D
Sbjct: 2 VLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 60
Query: 84 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
+++ KY V G+PTL F +G K E+ GGRDL+ F+
Sbjct: 61 AERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 102
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 19 SALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAF--TLEDDV 75
S + DV+ LT+D+F+K V +VEFYAPWCGHCKNL P + A+ + V
Sbjct: 3 SGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKV 62
Query: 76 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 124
+A +DA + LA +YG+ GFPT+K F KG +Y GGR D VS
Sbjct: 63 KLAAVDATVNQVLASRYGIRGFPTIKIFQKGESP-VDYDGGRTRSDIVS 110
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 8/109 (7%)
Query: 25 VVVLTEDNFEKEVGQD-RGALVEFYAPWCGHCKNLAPTYEKVAAAFT---LEDDVVVANL 80
V V+ N+ + V D + L+EFYAPWCGHCK LAP YE++ A + +D VV+A +
Sbjct: 9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 68
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFINE 128
DA D+ ++ + GFPT+K +P G K Y G R +ED + FI E
Sbjct: 69 DATA-NDVPDE--IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 114
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
L+EFYAPWCGHCK L P Y + + + D+V+A +DA ++Y V GFPT+ F
Sbjct: 29 LIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFA 88
Query: 104 PKGNKDGEEY--GGGRDLEDFVSFINEKCGTSRDGKGQLTSTA 144
P G+K GG RDLE FI+E K +L+ +
Sbjct: 89 PSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTKEELSGPS 131
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
VV L D+F + + L EF+APWCGHCKN+AP Y K AA +E ++ +A +D +
Sbjct: 16 VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVK-AAETLVEKNITLAQIDCTE 74
Query: 85 YKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 126
+DL ++ + GFP+LK F + + +Y G R E V F+
Sbjct: 75 NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFM 117
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 41 RGALVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
+ LV +YAPWCGHCK LAPTY+++A + DV++A L D ++ + G+PT
Sbjct: 377 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL--DHTENDVRGVVIEGYPT 434
Query: 100 LKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTSRDGKG 138
+ +P G K + Y G R L+ FI E DGK
Sbjct: 435 IVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKA 474
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 25 VVVLTEDNFEK-EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
V VL NFE + + VEFYAPWCGHCK LAP ++K+ + +++V+A +D+
Sbjct: 251 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 310
Query: 84 KYKDLAEKYGVSGFPTLKFFP-KGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG 138
+ E V FPTLKFFP ++ +Y G R L+ F F+ +DG G
Sbjct: 311 ANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE---SGGQDGAG 361
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 19 SALADDVVVLTEDNFEK-EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
S + V VL NFE + + VEFYAPWCGHCK LAP ++K+ + +++V+
Sbjct: 3 SGSSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVI 62
Query: 78 ANLDADKYKDLAEKYGVSGFPTLKFFP-KGNKDGEEYGGGRDLEDFVSFI 126
A +D+ + E V FPTLKFFP ++ +Y G R L+ F F+
Sbjct: 63 AKMDST--ANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 110
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 28 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
LT +F+K + + +LVEFYAPWCGHCK L+ T+ K A V N D +K K
Sbjct: 22 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNK 81
Query: 87 DLAEKYGVSGFPTLKFFPKGNKD----------------GEEYGGGRDLEDFVSF 125
L KY V+GFPTL F D E Y G R L V F
Sbjct: 82 ALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDF 136
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 20 ALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEK----VAAAFTLEDDV 75
L ++ L +N ++ + ALV FYA WC + L P +E+ + F E+ V
Sbjct: 2 PLGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQV 61
Query: 76 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129
V A +D D++ D+A++Y +S +PTLK F G EY G R ++ +I ++
Sbjct: 62 VFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQ 115
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCGHCK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 9/113 (7%)
Query: 19 SALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
S +A + +T+D+FE++V D+ LV+F+A WCG C+ +AP+ E +AA + D + +
Sbjct: 1 SHMAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEI 58
Query: 78 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVS 124
L+ D+ A KYGV PTL + G G RDLEDF++
Sbjct: 59 VKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA 111
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+FE +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LTED+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP E++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 21 LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 79
++D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA
Sbjct: 10 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAK 67
Query: 80 LDADKYKDLAEKYGVSGFPTLKFFPKG 106
L+ D+ A KYG+ G PTL F G
Sbjct: 68 LNIDQNPGTAPKYGIRGIPTLLLFKNG 94
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKGN 107
+ D+ A KYG+ G PTL F G+
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGD 85
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 23 DDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 81
D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L+
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 82 ADKYKDLAEKYGVSGFPTLKFFPKG 106
D+ A KYG+ G PTL F G
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP + +A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 59
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 60 NIDQNPGTAPKYGIRGTPTLLLFKNG 85
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
+ LT+ NF++ + D+ LV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDEN 60
Query: 86 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 125
+ ++G+ PTL F GGR ++ + +
Sbjct: 61 PETTSQFGIMSIPTLILF----------KGGRPVKQLIGY 90
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ +T+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
LV+F+APWCG C+ +AP ++ AAA TL V +A +D + +A ++ + G P F
Sbjct: 68 LVDFWAPWCGPCRQMAPQFQ--AAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF 125
Query: 104 PKGNKDGEEYGGGRDLEDFVSFINEKCGT 132
KG ++ G R + V F+ K G
Sbjct: 126 HKG-RELARAAGARPASELVGFVRGKLGA 153
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG C+ +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+++F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
++ ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SEKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
+ LT+ NF++ + D+ LV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDEN 60
Query: 86 KDLAEKYGVSGFPTLKFFPKG 106
+ ++G+ PTL F G
Sbjct: 61 PETTSQFGIMSIPTLILFKGG 81
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRSIPTLLLFKNG 84
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
+ LT+ NF++ + D LV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDEN 60
Query: 86 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 125
+ ++G+ PTL F GGR ++ + +
Sbjct: 61 PETTSQFGIMSIPTLILF----------KGGRPVKQLIGY 90
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WC CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG K +AP +++A + + + VA L
Sbjct: 21 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY--QGKLTVAKL 78
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 79 NIDQNPGTAPKYGIRGIPTLLLFKNG 104
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG K +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
+ LT+ NF++ + D LV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDEN 60
Query: 86 KDLAEKYGVSGFPTLKFFPKG 106
+ ++G+ PTL F G
Sbjct: 61 PETTSQFGIMSIPTLILFKGG 81
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +A +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
V+ +T++NFE+EV D+ LV+F+APWCG C+ +AP E++A + E V V ++ D
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEY--EGKVKVVKVNVD 60
Query: 84 KYKDLAEKYGVSGFPTLKFFPKGN 107
+ + A +YG+ PTL F G
Sbjct: 61 ENPNTAAQYGIRSIPTLLLFKNGQ 84
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGH-CKNLAPTYEKVAAAFTLEDDVVVAN 79
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++A + + + VA
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEY--QGKLTVAK 58
Query: 80 LDADKYKDLAEKYGVSGFPTLKFFPKG 106
L+ D+ A KYG+ G PTL F G
Sbjct: 59 LNIDQNPGTAPKYGIRGIPTLLLFKNG 85
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 66/113 (58%), Gaps = 9/113 (7%)
Query: 19 SALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 78
S + +V V+T++N+ + + D ++EFYAPWC C+NL P +E A + + +V +A
Sbjct: 3 SGSSGNVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWESF-AEWGEDLEVNIA 59
Query: 79 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE--EYGGGRDLEDFVSFINEK 129
+D + L+ ++ ++ PT+ KDGE Y G R +DF++FI++K
Sbjct: 60 KVDVTEQPGLSGRFIINALPTIYHC----KDGEFRRYQGPRTKKDFINFISDK 108
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
T F+ + QD+ +V+FYA WCG CK +AP EK + + D LD D+ D+
Sbjct: 7 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDV 63
Query: 89 AEKYGVSGFPTLKFFPKGNKDGEEYGGG 116
A+K VS PTL F G + + G
Sbjct: 64 AQKNEVSAMPTLLLFKNGKEVAKVVGAN 91
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
T F+ + QD+ +V+FYA WCG CK +AP EK + + D LD D+ D+
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDV 69
Query: 89 AEKYGVSGFPTLKFFPKGNKDGEEYGGG 116
A+K VS PTL F G + + G
Sbjct: 70 AQKNEVSAMPTLLLFKNGKEVAKVVGAN 97
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 87
+T+ NF++ +GQ LV+F+A WC C+ +AP E++A + E ++VA LD D+
Sbjct: 7 VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENPK 64
Query: 88 LAEKYGVSGFPTLKFFPKGNKDGE 111
A +Y V PT+ F KDG+
Sbjct: 65 TAXRYRVXSIPTVILF----KDGQ 84
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 87
+T+ NF++ +GQ LV+F+A WC C+ +AP E++A + E ++VA LD D+
Sbjct: 6 VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENPK 63
Query: 88 LAEKYGVSGFPTLKFFPKGNKDGE 111
A +Y V PT+ F KDG+
Sbjct: 64 TAXRYRVXSIPTVILF----KDGQ 83
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
V+ + D F++ G D+ +++F+A WCG CK + P +EK++ D V +D D+
Sbjct: 19 VISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT-PAGDKVGFYKVDVDEQ 77
Query: 86 KDLAEKYGVSGFPTLKFFPKGNK 108
+A++ G+ PT FF G K
Sbjct: 78 SQIAQEVGIRAMPTFVFFKNGQK 100
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
+V ++ F+ + Q+ +V+F+A WCG CK +AP YE+ + +T +V +D D+
Sbjct: 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEV 68
Query: 86 KDLAEKYGVSGFPTLKFFPKGN 107
++ EK ++ PT K + G+
Sbjct: 69 SEVTEKENITSMPTFKVYKNGS 90
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ +V + GA LV+F+A WC K +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KYG+ G PTL F G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+D ++ LT+D+F+ ++ + GA LV+F+A WCG CK +AP +++A + + + VA L
Sbjct: 1 SDKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D+ A KY G PTL F G
Sbjct: 59 NIDQNPGTAPKYIERGIPTLLLFKNG 84
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102
+++F+A WCG CK ++P +++ F D+VVV +D D+ +D+A +Y +S PT F
Sbjct: 23 VVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTFVF 80
Query: 103 FPKGNKDGEEYGG--GRDLEDFV 123
G K EE+ G + LED +
Sbjct: 81 LKNGVK-VEEFAGANAKRLEDVI 102
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
+++F+A WCG CK ++P +++ F D+VVV +D D+ +D+A +Y +S PT F
Sbjct: 29 VLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTFVFL 86
Query: 104 PKGNKDGEEYGG--GRDLEDFV 123
G K EE+ G + LED +
Sbjct: 87 KNGVK-VEEFAGANAKRLEDVI 107
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 26 VVLTEDNFEKEVGQDRGAL--VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
V+ T + EK + +++G L V+F+A WCG C+N+AP E +A +V A +D D
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVD 59
Query: 84 KYKDLAEKYGVSGFPTLKFFPKGNKDGEE 112
+ ++ A KY V+ PT F KDG+E
Sbjct: 60 QNEEAAAKYSVTAMPTFVFI----KDGKE 84
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 28 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
+T+ +F +V ++ LV+F+A WCG CK +AP E++A D+ VA LD D
Sbjct: 12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA--TDLTVAKLDVDTNP 69
Query: 87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 127
+ A + V PTL F G G R+L D V +N
Sbjct: 70 ETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 116
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 17/101 (16%)
Query: 21 LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGH--------------CKNLAPTYEKV 65
++D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++
Sbjct: 1 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEI 60
Query: 66 AAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 106
A + + + VA L+ D+ A KYG+ G PTL F G
Sbjct: 61 ADEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 28 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
+T+ +F +V ++ LV+F+A WCG CK +AP E++A D+ VA LD D
Sbjct: 17 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDTNP 74
Query: 87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 127
+ A + V PTL F G G R+L D V +N
Sbjct: 75 ETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 121
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
T F+ + QD+ +V+FYA WCG K +AP EK + + D LD D+ D+
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQAD---FYKLDVDELGDV 69
Query: 89 AEKYGVSGFPTLKFFPKGNKDGEEYGGG 116
A+K VS PTL F G + + G
Sbjct: 70 AQKNEVSAMPTLLLFKNGKEVAKVVGAN 97
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F+A WCG CK +AP EK A ++ D LD D+ D+A+K VS PT
Sbjct: 26 DKLVVVDFFATWCGPCKMIAPMIEKFAEQYS---DAAFYKLDVDEVSDVAQKAEVSSMPT 82
Query: 100 LKFFPKGNKD 109
L F+ KG K+
Sbjct: 83 LIFY-KGGKE 91
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F+A WCG CK +AP EK A ++ D LD D+ D+A+K VS PT
Sbjct: 19 DKLVVVDFFATWCGPCKMIAPMIEKFAEQYS---DAAFYKLDVDEVSDVAQKAEVSSMPT 75
Query: 100 LKFFPKGNKD 109
L F+ KG K+
Sbjct: 76 LIFY-KGGKE 84
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ A+V+FYA WCG CK +AP E+++ + + + ++ DK +LA +G+ G PT
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQGIPT 108
Query: 100 LKFFP 104
+ F P
Sbjct: 109 IWFVP 113
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASESEVKSMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
+FF KG K GE G + E + INE
Sbjct: 77 FQFFKKGQKVGEFSGANK--EKLEATINE 103
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKSMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
+FF KG K GE G + E + INE
Sbjct: 77 FQFFKKGQKVGEFSGANK--EKLEATINE 103
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 21 LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 79
L + LT F ++V Q + +V+FYAPWCG C+N AP +E +A ++ V
Sbjct: 1 LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLAR--MIKGKVRAGK 58
Query: 80 LDADKYKDLAEKYGVSGFPTLKFFP--KGNKD-GEEYGGGRDLEDFVSFI 126
+D Y +K G+ +P++K + + K EE RD + + I
Sbjct: 59 VDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALI 108
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 36 EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 95
E +++ +V+F+A WCG CK +AP +++++ + D + +D DK ++ A KY +S
Sbjct: 29 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNIS 84
Query: 96 GFPTLKFFPKGNKDGEEYGGG-RDLEDFV 123
PT G K G+ G +ED +
Sbjct: 85 AMPTFIAIKNGEKVGDVVGASIAKVEDMI 113
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 36 EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 95
E +++ +V+F+A WCG CK +AP +++++ + D + +D DK ++ A KY +S
Sbjct: 20 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNIS 75
Query: 96 GFPTLKFFPKGNKDGEEYGGG-RDLEDFV 123
PT G K G+ G +ED +
Sbjct: 76 AMPTFIAIKNGEKVGDVVGASIAKVEDMI 104
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
VV E F +EV LV+F+APWCG C+ ++P E++A VV N+ D+
Sbjct: 35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNV--DE 92
Query: 85 YKDLAEKYGVSGFPTLKFFPKG 106
+ LA +YGV PTL F +G
Sbjct: 93 HPGLAARYGVRSVPTLVLFRRG 114
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 28 LTEDNFEKEVGQDR-GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
+ +D F+ V + LV+F+APWCG C+ +AP +++A + +D + L+ D+
Sbjct: 6 VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEY--KDKLKCVKLNTDESP 63
Query: 87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 116
++A +YG+ PT+ F KG K E G
Sbjct: 64 NVASEYGIRSIPTIMVF-KGGKKCETIIGA 92
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASEXEVKCMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
+FF KG K GE G + E + INE
Sbjct: 77 FQFFKKGQKVGEFSGANK--EKLEATINE 103
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
+FF KG K GE G + E + INE
Sbjct: 77 FQFFKKGQKVGEFSGANK--EKLEATINE 103
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 30 EDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 87
+++F K++ + ++ +++FYA WCG CK +AP E+++ + + DVV +D D+ +D
Sbjct: 8 QEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVDVDECED 64
Query: 88 LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118
+A+ ++ PT F G K G D
Sbjct: 65 IAQDNQIACMPTFLFMKNGQKLDSLSGANYD 95
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 87
L NF++ + +++ +V+F+A WC C LAP E++A + V L+ ++ +D
Sbjct: 11 LNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYP---QVAFGKLNTEESQD 67
Query: 88 LAEKYGVSGFPTLKFFPKG 106
+A +YG+ PT+ FF G
Sbjct: 68 IAMRYGIMSLPTIMFFKNG 86
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
D +VLTE+NF++ + ++ LV+ +A WC C P Y+KVA + + V L+
Sbjct: 4 DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKY--KGKAVFGRLNV 61
Query: 83 DKYKDLAEKYGVSGFPTLKFFPKG 106
D+ + +A+KY V PT F G
Sbjct: 62 DENQKIADKYSVLNIPTTLIFVNG 85
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 32 NFEKEVGQ-----DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
NFEK + D+ A+V+FYA WCG CK +AP +++A + + +V+ +D +K +
Sbjct: 25 NFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEY--DGQIVIYKVDTEKEQ 82
Query: 87 DLAEKYGVSGFPTLKFFP 104
+LA +G+ P++ F P
Sbjct: 83 ELAGAFGIRSIPSILFIP 100
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
V+ L NF+ + A+V+F+A WC C LAP E++A + V L++D+
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP---QVGFGKLNSDE 57
Query: 85 YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
D+A +YGV PT+ FF KDGE
Sbjct: 58 NPDIAARYGVMSLPTVIFF----KDGE 80
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 38 GQDRGALV--EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 95
G+D G LV +F A WCG C+ +AP + + A F + +D D+ KD+AE Y V
Sbjct: 24 GKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVE 80
Query: 96 GFPTLKFFPKGNKDGEEYGGGRD 118
PT F G K GG +D
Sbjct: 81 AMPTFLFIKDGEKVDSVVGGRKD 103
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEVKATPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
+FF KG K GE G + E + INE
Sbjct: 77 FQFFKKGQKVGEFSGANK--EKLEATINE 103
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 4 YQIWLALGTLTLFFVSALADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPT 61
Y + LALGT + A+ V + +D F V D+ +++ + WCG CK +AP
Sbjct: 2 YYLELALGTQEM---EAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPK 58
Query: 62 YEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118
YEK+A + DV+ LD ++ K LA++ G+ PT K + + GE G D
Sbjct: 59 YEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 113
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG CK + P + ++ ++ +V+ +D D +D+A KYG+ G PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVAPKYGIRGIPT 76
Query: 100 LKFFPKGNKDGEEYGG 115
L F G + G
Sbjct: 77 LLLFKNGEVAATKVGA 92
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCTPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
+FF KG K GE G + E + INE
Sbjct: 77 FQFFKKGQKVGEFSGANK--EKLEATINE 103
>pdb|2QC7|A Chain A, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
pdb|2QC7|B Chain B, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
Length = 240
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 24/190 (12%)
Query: 62 YEKVAAAFTLEDDVVVANLDADKYKD-----LAEKYGV--SGFPTLKFFPKGNKDGEEYG 114
++++A DD++VA + Y D L+EKY + +P F +DG
Sbjct: 42 FKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLF----RDG---- 93
Query: 115 GGRDLEDFVSFINE-KCGTSR---DGKGQLTSTAGIVASLDALVKEFVAASGDE-KKAVF 169
D E+ V + K G + G+G G + DAL EF+ ASG E ++A+
Sbjct: 94 ---DFENPVPYTGAVKVGAIQRWLKGQGVYLGMPGCLPVYDALAGEFIRASGVEARQALL 150
Query: 170 SKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKS-ISAAKADEF 228
+ + + ++ + + + YLK+ +D+G D+ E+ R+ R+++K+ +S K +E
Sbjct: 151 KQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASEMTRIARLIEKNKMSDGKKEEL 210
Query: 229 VLKKNILSTF 238
NIL+ F
Sbjct: 211 QKSLNILTAF 220
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ A+V+FYA WCG CK +AP E+++ + + + ++ DK +LA +G+ PT
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQSIPT 108
Query: 100 LKFFP 104
+ F P
Sbjct: 109 IWFVP 113
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG CK + P + ++ ++ +V+ +D + +D+A + V PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVNDCQDVASECEVKCMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRD 118
+FF KG K GE G ++
Sbjct: 77 FQFFKKGQKVGEFSGANKE 95
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
+V T+ +F E + L +F+APWCG CK +AP E++ + D + + +D D+
Sbjct: 3 IVKATDQSFSAETSEGV-VLADFWAPWCGPCKMIAPVLEELDQ--EMGDKLKIVKIDVDE 59
Query: 85 YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
++ A KYGV PTL KDGE
Sbjct: 60 NQETAGKYGVMSIPTLLVL----KDGE 82
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 28 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
+T+ +F +V ++ LV+F+A WCG K +AP E++A D+ VA LD D
Sbjct: 14 VTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERA--TDLTVAKLDVDTNP 71
Query: 87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 127
+ A + V PTL F G G R+L D V +N
Sbjct: 72 ETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 118
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
+V +T+ +F+ +V + LV+F+A WCG CK +AP E++AA + + D++ LD D+
Sbjct: 5 IVKVTDADFDSKV-ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADIL--KLDVDE 61
Query: 85 YKDLAEKYGVSGFPTLKFFPKGN 107
A KY V PTL F G
Sbjct: 62 NPSTAAKYEVMSIPTLIVFKDGQ 84
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
+V +T+ +F+ +V + LV+F+A WCG CK +AP E++AA + + D++ LD D+
Sbjct: 6 IVKVTDADFDSKV-ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85 YKDLAEKYGVSGFPTLKFFPKGN 107
A KY V PTL F G
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDGQ 85
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 19 SALADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
+A++ V+ +T+ FE EV + ++ LV F+A WCG C+ ++P AA T D + V
Sbjct: 3 TAMSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLIN--LAANTYSDRLKV 60
Query: 78 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 127
L+ D +KY V G P L+ KG + + G + +SF++
Sbjct: 61 VKLEIDPNPTTVKKYKVEGVPALRLV-KGEQILDSTEGVISKDKLLSFLD 109
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
+V +T+ +F+ +V + LV+F+A WCG CK +AP E++AA + + D++ LD D+
Sbjct: 6 IVKVTDADFDSKV-ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85 YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
A KY V PTL F KDG+
Sbjct: 63 NPSTAAKYEVMSIPTLIVF----KDGQ 85
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F+A WCG K +AP EK A ++ D LD D+ D+A+K VS PT
Sbjct: 27 DKLVVVDFFATWCGPSKMIAPMIEKFAEQYS---DAAFYKLDVDEVSDVAQKAEVSSMPT 83
Query: 100 LKFFPKGNKD 109
L F+ KG K+
Sbjct: 84 LIFY-KGGKE 92
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F+A WCG K +AP EK A ++ D LD D+ D+A+K VS PT
Sbjct: 19 DKLVVVDFFATWCGPSKMIAPMIEKFAEQYS---DAAFYKLDVDEVSDVAQKAEVSSMPT 75
Query: 100 LKFFPKGNKD 109
L F+ KG K+
Sbjct: 76 LIFY-KGGKE 84
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 34 EKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG 93
++ V + +V+F+A WCG CK L P EK+ A VV+A +D D + DLA +Y
Sbjct: 25 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVA--KQHGKVVMAKVDIDDHTDLAIEYE 82
Query: 94 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131
VS PT+ G+ +++ G +D + +F+ + G
Sbjct: 83 VSAVPTVLAMKNGDV-VDKFVGIKDEDQLEAFLKKLIG 119
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 20 DKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDSQDVASESEVKSMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
+FF KG K GE G + E + INE
Sbjct: 77 FQFFKKGQKVGEFSGANK--EKLEATINE 103
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 89
+++FEK G + +V+F A WC CK +AP + ++A F +V +D D+ K +A
Sbjct: 16 KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVA 72
Query: 90 EKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118
E++ V PT F G + G +D
Sbjct: 73 EEWNVEAMPTFIFLKDGKLVDKTVGADKD 101
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102
+V+F+APWCG CK +AP +++A ++ + V L+ D+ +A +Y + PT+ F
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLF 78
Query: 103 FPKGNK 108
F G +
Sbjct: 79 FKNGER 84
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102
+V+F+APWCG CK +AP +++A ++ + V L+ D+ +A +Y + PT+ F
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLF 77
Query: 103 FPKGNK 108
F G +
Sbjct: 78 FKNGER 83
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 25/117 (21%)
Query: 25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV-------- 75
VV LT++ F+ V ++ V +Y PW H AA L DD+
Sbjct: 17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHS----------VAAMRLWDDLSMSQSQKR 66
Query: 76 -----VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 126
V A +D +KY D+ E+ VSGFPT++++ + +K EY G R L SF+
Sbjct: 67 NHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 31 DKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKSMPT 87
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
+FF KG K GE G + E + INE
Sbjct: 88 FQFFKKGQKVGEFSGANK--EKLEATINE 114
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 20 DKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKRMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
+FF KG K GE G + E + INE
Sbjct: 77 FQFFKKGQKVGEFSGANK--EKLEATINE 103
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 20 DKLVVVDFSATWCGPAKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEVKATPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
+FF KG K GE G + E + INE
Sbjct: 77 FQFFKKGQKVGEFSGANK--EKLEATINE 103
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 18 VSALADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 75
+ A+ V + +D F V D+ +++ + WCG CK +AP YEK+A + DV
Sbjct: 1 MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DV 57
Query: 76 VVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118
+ LD ++ K LA++ G+ PT K + + GE G D
Sbjct: 58 IFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 101
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
+V T+ +F E + L +F+APWCG K +AP E++ + D + + +D D+
Sbjct: 3 IVKATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELDQ--EMGDKLKIVKIDVDE 59
Query: 85 YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
++ A KYGV PTL KDGE
Sbjct: 60 NQETAGKYGVMSIPTLLVL----KDGE 82
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
+V T+ +F E + L +F+APWCG K +AP E++ + D + + +D D+
Sbjct: 3 IVKATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELDQ--EMGDKLKIVKIDVDE 59
Query: 85 YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
++ A KYGV PTL KDGE
Sbjct: 60 NQETAGKYGVMSIPTLLVL----KDGE 82
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 29 TEDNFEKEVGQDRGA----LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
+D F+ ++ + + A +++F A WCG C+ +AP + + A F V +D D+
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDE 77
Query: 85 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118
K++AEKY V PT F G + + G +D
Sbjct: 78 LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 111
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
+V +T+ +F+ +V + LV+F+A WCG K +AP E++AA + + D++ LD D+
Sbjct: 6 IVKVTDADFDSKV-ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85 YKDLAEKYGVSGFPTLKFFPKGN 107
A KY V PTL F G
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDGQ 85
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
+++F A WCG C+ +AP + +A F + V +D D+ K +AE++ V PT F
Sbjct: 38 VIDFTASWCGPCRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTFLFM 94
Query: 104 PKGNKDGEEYGGGRD 118
+G+ G ++
Sbjct: 95 KEGDVKDRVVGAIKE 109
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGAL-VEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVAN 79
+D + +L D V R A VEF+A WCGHC APT+ +A + +A
Sbjct: 11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAA 70
Query: 80 LDADKYKD--LAEKYGVSGFPTLKFFPKGNKDG 110
LD + + + + + GFPT++FF +G
Sbjct: 71 LDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNG 103
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
+V+F+APWCG K +AP +++A ++ + V L+ D+ +A +Y + PT+ FF
Sbjct: 22 MVDFWAPWCGPSKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLFF 79
Query: 104 PKGNK 108
G +
Sbjct: 80 KNGER 84
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 87
LTE F + Q+ +++FYA WCG CK + P K+ A+ DV D D+ D
Sbjct: 20 LTE--FRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP---DVRFVKCDVDESPD 74
Query: 88 LAEKYGVSGFPTLKFFPKGNKDGEEYG 114
+A++ V+ PT KDG+ G
Sbjct: 75 IAKECEVTAMPTFVL----GKDGQLIG 97
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
LV+F+A WCG C+ L +A A DV +D DK + A+ YGVS P L FF
Sbjct: 27 LVDFFATWCGPCQRLGQILPSIAEA---NKDVTFIKVDVDKNGNAADAYGVSSIPAL-FF 82
Query: 104 PKGNKDGEEYGGGRDLEDFV 123
K K+G E + L+ FV
Sbjct: 83 VK--KEGNEI---KTLDQFV 97
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 25 VVVLTEDNFEKEVGQ---DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 81
VV LT F + V Q D +V+FY+PW + L P ++++A TL + V ++D
Sbjct: 545 VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMAR--TLTGLINVGSVD 602
Query: 82 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY----GGGRD 118
+Y + V +P ++F+P+ + +Y G RD
Sbjct: 603 CGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRD 643
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 21 LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 79
L + LT F ++V Q + +V+FYAPW G +N AP +E +A ++ V
Sbjct: 655 LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLAR--MIKGKVRAGK 712
Query: 80 LDADKYKDLAEKYGVSGFPTLKFF 103
+D Y +K G+ +P++K +
Sbjct: 713 VDCQAYPQTCQKAGIKAYPSVKLY 736
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 16 FFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 75
F ++ V L NF LV+F+APW + L P K A+ L +
Sbjct: 433 FAKESVNSHVTTLGPQNFP--ASDKEPWLVDFFAPWSPPSRALLPELRK--ASTLLYGQL 488
Query: 76 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
V LD ++ L Y + +PT F + + EY G E + FI
Sbjct: 489 KVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSI--HEYEGHHSAEQILEFI 537
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
+++ L F+ V V FY+P H +LAPT+ + A + N D
Sbjct: 117 EIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDD 176
Query: 84 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 125
+ L GV+ +P+L F G +Y G R E V+F
Sbjct: 177 RM--LCRMKGVNSYPSLFIFRSG-MAAVKYNGDRSKESLVAF 215
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
+V +T+ +F+ +V + LV+F+A CG CK +AP E++AA + + D++ LD D+
Sbjct: 5 IVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADIL--KLDVDE 61
Query: 85 YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
A KY V PTL F KDG+
Sbjct: 62 NPSTAAKYEVMSIPTLIVF----KDGQ 84
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVA---AAFTLEDDVVV 77
+D + +L D+ V G VEF+A WCGH APT++++A + ++ V
Sbjct: 11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAV 70
Query: 78 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG 110
+ + + ++ ++GFPT++FF K+G
Sbjct: 71 LDCAEETNSAVCREFNIAGFPTVRFFQAFTKNG 103
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A W G K + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 20 DKLVVVDFSATWSGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
+FF KG K GE G + E + INE
Sbjct: 77 FQFFKKGQKVGEFSGANK--EKLEATINE 103
>pdb|1G7D|A Chain A, Nmr Structure Of Erp29 C-Domain
Length = 106
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 145 GIVASLDALVKEFVAASGDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 203
G + + DAL +F+ AS E ++A+ + + G+ ++ + + YLK+ +D+G D
Sbjct: 2 GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGED 61
Query: 204 YAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
+ E+ R+ ++++ +S K +E NIL+ F
Sbjct: 62 FPASELARISKLIENKMSEGKKEELQRSLNILTAF 96
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
+++ L F+ V V FY+P C HC +LAPT+ + A + N D
Sbjct: 98 EIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDD 157
Query: 84 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 125
+ L GV+ +P+L F G +Y G R E V+F
Sbjct: 158 RM--LCRMKGVNSYPSLFIFRSGMA-AVKYNGDRSKESLVAF 196
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
+V+ T + +K + D +++F+APWCG C++ AP + + AA + V N +A+
Sbjct: 39 EVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAE 98
Query: 84 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD 135
L+ ++ + PT+ + G K + G F ++++E+ SRD
Sbjct: 99 PA--LSTRFRIRSIPTIXLYRNG-KXIDXLNGAVPKAPFDNWLDEQ--LSRD 145
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFP 98
D+ +++ + WCG K +AP YEK+A + DV+ LD ++ K LA++ G+ P
Sbjct: 24 DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVP 80
Query: 99 TLKFFPKGNKDGEEYGGGRD 118
T K + + GE G D
Sbjct: 81 TFKILKENSVVGEVTGAKYD 100
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 100
+ +V FY+P C +CK P +E+ A + V ++ AEKYGV G PT
Sbjct: 25 KPVVVXFYSPACPYCKAXEPYFEEYAKEYG--SSAVFGRINIATNPWTAEKYGVQGTPTF 82
Query: 101 KFFPKGNKDGEEYG 114
KFF G E+ G
Sbjct: 83 KFFCHGRPVWEQVG 96
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 28 LTEDNFEKEVGQDRGALV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
L++ +F+ EV Q ++ F WC CK + PT+E++A+ +E D+ A +DA+ +
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQ--MEGDIRFAYMDAEDAE 61
Query: 87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 127
+ + P+L F G E + G + D +IN
Sbjct: 62 KTMAELNIRTLPSLALFVDG-MIREVFSGTMNKSDLRYWIN 101
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWC---GHCKNLAPTYEKVAAAFTLEDDVVVAN 79
++V + E N ++ + Q V FY W HC L P E +AA + ++A
Sbjct: 7 QNIVNINESNLQQTLEQSXTTPVLFYF-WSERSQHCLQLTPVLESLAAQY--HGQFILAK 63
Query: 80 LDADKYKDLAEKYGVSGFPTLKFFPKGNK-DG 110
LD D + +A ++G+ PT+ F G DG
Sbjct: 64 LDCDAEQXIAAQFGLRAIPTVYLFQNGQPVDG 95
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ +V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDXQDVASEXEVKCMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRD 118
+FF KG K GE G ++
Sbjct: 77 FQFFKKGQKVGEFSGANKE 95
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
+++F A WCG + +AP + +A F + V +D D+ K +AE++ V PT F
Sbjct: 41 VIDFTASWCGPSRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTFLFM 97
Query: 104 PKGN 107
+G+
Sbjct: 98 KEGD 101
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWC---GHCKNLAPTYEKVAAAFTLEDDVVVAN 79
+++V + E N ++ + Q V FY W HC L P E +AA + ++A
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFYF-WSERSQHCLQLTPILESLAAQYN--GQFILAK 63
Query: 80 LDADKYKDLAEKYGVSGFPTLKFFPKGNK-DG 110
LD D + +A ++G+ PT+ F G DG
Sbjct: 64 LDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDG 95
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
+V+F A WCG C+ +AP + +A +V+ +D D+ K +A + + PT F
Sbjct: 42 VVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQAMPTFMFL 98
Query: 104 PKGNKDGEEYGGGRD 118
+G + G +D
Sbjct: 99 KEGKILDKVVGAKKD 113
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
++ + +++ +F+++V + G LV+F+A WCG CK + P ++ F V VA +
Sbjct: 1 SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKV 58
Query: 81 DADKYKDLAEKYGVSGFPTLKFFPKG 106
+ D + Y V PTL G
Sbjct: 59 NIDDNPETPNAYQVRSIPTLMLVRDG 84
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 14 TLFFVSALADDVVVLTEDNFEKEVGQDRG--ALVEFYAPWCGHCKNLAPTYEKVAAAFTL 71
L ALA + + T K + Q RG LV F+A WC +C++ P+ +++ +F
Sbjct: 13 PLVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPK 72
Query: 72 EDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131
D VV+A + K EKY + + F ++ G L D +FI ++ G
Sbjct: 73 GDLVVLA---VNVEKRFPEKYRRAPV-SFNFLSDATGQVQQRYGANRLPD--TFIVDRKG 126
Query: 132 TSRD 135
R
Sbjct: 127 IIRQ 130
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
+VEF+A W C++ AP Y ++ + + +D +Y D++ +Y VS P K
Sbjct: 30 IVEFFANWSNDCQSFAPIYADLSLKYNCT-GLNFGKVDVGRYTDVSTRYKVSTSPLTKQL 88
Query: 104 P 104
P
Sbjct: 89 P 89
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
V + + F + +D + F A WCG CK + EK+A F V A +DAD
Sbjct: 24 VYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNS 80
Query: 87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 116
++ K V PT G G G
Sbjct: 81 EIVSKCRVLQLPTFIIARSGKMLGHVIGAN 110
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
+V F+APW C + ++A V L+A+ +++EKY +S PT FF
Sbjct: 36 VVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVPEVSEKYEISSVPTFLFF 92
Query: 104 PKGNK 108
K
Sbjct: 93 KNSQK 97
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
+V F+APW C + ++A V L+A+ +++EKY +S PT FF
Sbjct: 42 VVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKLEAEGVPEVSEKYEISSVPTFLFF 98
Query: 104 PKGNK 108
K
Sbjct: 99 KNSQK 103
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 32 NFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-ADKYKDLAE 90
+F E + A++ F+APWC C+ AP +VAA+ V VA LD ++
Sbjct: 17 DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVN 76
Query: 91 KYGVSGFPTL 100
KY V F L
Sbjct: 77 KYPVKTFTQL 86
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 32 NFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-ADKYKDLAE 90
+F E + A++ F+APWC C+ AP +VAA+ V VA LD ++
Sbjct: 31 DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVN 90
Query: 91 KYGVSGFPTL 100
KY V F L
Sbjct: 91 KYPVKTFTQL 100
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 36 EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 91
+VG + G ++ GH +APT E VA TLED+V+ A LD D+ ++L E
Sbjct: 236 KVGMEEGCML------LGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREH 285
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 36 EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 91
+VG + G ++ GH +APT E VA TLED+V+ A LD D+ ++L E
Sbjct: 236 KVGMEEGCML------LGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREH 285
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 36 EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 91
+VG + G ++ GH +APT E VA TLED+V+ A LD D+ ++L E
Sbjct: 236 KVGMEEGCML------LGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREH 285
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
L F A WCG CK +AP Y +++ + ++ +D D+ D + + + PT F
Sbjct: 50 LANFSARWCGPCKQIAPYYIELSENYP---SLMFLVIDVDELSDFSASWEIKATPTFFFL 106
Query: 104 PKGNK 108
G +
Sbjct: 107 RDGQQ 111
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 21 LADDVVVLTEDNFEK--EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---- 74
L VV L+ D+F + V +V FY CG C+ A T+ K A +E
Sbjct: 21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDAL 80
Query: 75 --VVVANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFIN 127
A ++ DL KY ++ P L FF P+ + E G LE V+F N
Sbjct: 81 QIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLE-HVAFEN 135
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD----VVVANLDADKYKDLAEKYGV 94
+ + +V+F A WCG CK +AP +E TL +D V+ +D D +AE G+
Sbjct: 23 EHKPIVVDFTATWCGPCKMIAPLFE------TLSNDYAGKVIFLKVDVDAVAAVAEAAGI 76
Query: 95 SGFPTLKFFPKGNKDGEEYGGGRD 118
+ PT + G K + G +D
Sbjct: 77 TAMPTFHVYKDGVKADDLVGASQD 100
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 39 QDRGALVEFYAPWCGHCKNLAPTYEK---VAAAFTLEDDVVVANLDADKYK----DLAEK 91
+D+ V+ + WCG CK L+ K VA F NL D K +L +K
Sbjct: 26 EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH----FVNLKMDMEKGEGVELRKK 81
Query: 92 YGVSGFPTLKFFPKGNKDGE 111
YGV +PTL F N GE
Sbjct: 82 YGVHAYPTLLFI---NSSGE 98
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD----VVVANLDADKYKDLAEKYGV 94
+ + +V F A WCG CK +AP +E TL +D V+ +D D +AE G+
Sbjct: 23 EHKPIVVAFTATWCGPCKMIAPLFE------TLSNDYAGKVIFLKVDVDAVAAVAEAAGI 76
Query: 95 SGFPTLKFFPKGNKDGEEYGGGRD 118
+ PT + G K + G +D
Sbjct: 77 TAMPTFHVYKDGVKADDLVGASQD 100
>pdb|2AYT|A Chain A, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
pdb|2AYT|B Chain B, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
Length = 237
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 47 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN-LDADKYKDLAEKYGVSGFPTLKFFPK 105
F CG+C P+ +A F L +D + + +DA + +DLAE++ V G P +
Sbjct: 143 FVTTSCGYC----PSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--- 195
Query: 106 GNKDGEEYGGGRDLEDFVSFI 126
NK E+ G + F+ +I
Sbjct: 196 -NKGVAEFVGAQPENAFLGYI 215
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 53 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 91
GH +APT E VA TLED+V+ A +D D+ ++L E
Sbjct: 246 GHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREH 284
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102
A+V F+ C HCKN+ +K A V ++++D++ +L ++ G PTL F
Sbjct: 22 AIVFFHKNLCPHCKNMEKVLDKFGAR---APQVAISSVDSEARPELMKELGFERVPTLVF 78
Query: 103 FPKG 106
G
Sbjct: 79 IRDG 82
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 53 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 91
GH +APT E VA TLED+V+ A +D D+ ++L E
Sbjct: 246 GHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREH 284
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 41 RGALVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVV-ANLDADKYKDLA--EKYGVSG 96
+ +++ YA WC CK T+ L D V++ AN+ A+ +D+A + V G
Sbjct: 32 KPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG 91
Query: 97 FPTLKFFPKGNKDGEEYGGGR-----DLEDFVSFINEK 129
PT+ FF + G+E+ R D E F + + ++
Sbjct: 92 LPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDR 126
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 41 RGALVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVV-ANLDADKYKDLA--EKYGVSG 96
+ +++ YA WC CK T+ L D V++ AN+ A+ +D+A + V G
Sbjct: 29 KPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG 88
Query: 97 FPTLKFFPKGNKDGEEYGGGR-----DLEDFVSFINEK 129
PT+ FF + G+E+ R D E F + + ++
Sbjct: 89 LPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDR 123
>pdb|2YWM|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
Length = 229
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 47 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN-LDADKYKDLAEKYGVSGFPTLKFFPK 105
F CG+C P+ A F L +D + + +DA + +DLAE++ V G P +
Sbjct: 143 FVTTSCGYC----PSAAVXAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--- 195
Query: 106 GNKDGEEYGGGRDLEDFVSFI 126
NK E+ G + F+ +I
Sbjct: 196 -NKGVAEFVGAQPENAFLGYI 215
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA 68
L+ F+ Q + A++ F+ PWC C AP+ +VAAA
Sbjct: 10 TTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA 52
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
L F A WCG + +AP Y +++ + ++ +D D+ D + + + PT F
Sbjct: 50 LANFSARWCGPSRQIAPYYIELSENYP---SLMFLVIDVDELSDFSASWEIKATPTFFFL 106
Query: 104 PKGNK 108
G +
Sbjct: 107 RDGQQ 111
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
D+ ++ F+ W CK L +E ++ + +V ++DAD+ +++E + +S P
Sbjct: 21 DKLIVLYFHTSWAEPCKALKQVFEAISNEPS-NSNVSFLSIDADENSEISELFEISAVPY 79
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFI 126
KG E G D +++VS +
Sbjct: 80 FIIIHKGTILKE--LSGADPKEYVSLL 104
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 27 VLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
V ++ +F+ E+ R A+V+F CG C +AP + ++ + V +D +
Sbjct: 6 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQ 62
Query: 85 YKDLAEKYGVSGFPTLKFF 103
+ A +S PT +FF
Sbjct: 63 CQGTAATNNISATPTFQFF 81
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDA---DKYKDLAEKYGVSGFPTL 100
++F+A WCG C+ P + A + + VV NLDA D K LA+ V T+
Sbjct: 33 LDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQ---VPAEFTV 89
Query: 101 KFFPKGN 107
F PKG
Sbjct: 90 AFDPKGQ 96
>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|B Chain B, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|C Chain C, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|D Chain D, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
Length = 470
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 21 LADDVVVLTEDNFEK--EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---- 74
L VV L+ D+F + V +V FY CG + A T+ K A +E
Sbjct: 21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGASRRYASTFSKFAGGLKVEHGKDAL 80
Query: 75 --VVVANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFIN 127
A ++ DL KY ++ P L FF P+ + E G LE V+F N
Sbjct: 81 QIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLE-HVAFEN 135
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 98
Q+ +++F A WC C + ++ + V + ++D D + L +++ + P
Sbjct: 39 QNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY----VTLVDIDVDIHPKLNDQHNIKALP 94
Query: 99 TLKFFPKGNKD 109
T +F+ N +
Sbjct: 95 TFEFYFNLNNE 105
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 47 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 100
F+A WC C + +K+ + + + +D DK + LA K+ V PT+
Sbjct: 49 FFAKWCQACTMQSTEMDKLQKYYG--KRIYLLKVDLDKNESLARKFSVKSLPTI 100
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 18 VSALADDVVVLTEDNFEKEVGQDRGALV--EFYAPWCGHCKNLAPTYEK 64
+ +A D + D + + RG +V +F A WCG C+ P EK
Sbjct: 9 IGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEK 57
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKY--KDLAEKYGVSGF 97
+G + F+ WC HCK P F + ++V N+ K + + YGV+ F
Sbjct: 27 KGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN-F 85
Query: 98 PTL 100
P +
Sbjct: 86 PVV 88
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKY--KDLAEKYGVSGF 97
+G + F+ WC HCK P F + ++V N+ K + + YGV+ F
Sbjct: 24 KGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN-F 82
Query: 98 PTL 100
P +
Sbjct: 83 PVV 85
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+V + WCG CK L P + + L + V+ NL
Sbjct: 43 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNL 79
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
+V + WCG CK L P + + L + V+ NL
Sbjct: 50 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNL 86
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 47 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 100
F +P C HC E+VA + D V V ++ + A +YG+ PT+
Sbjct: 9 FTSPMCPHCPAAKRVVEEVAN--EMPDAVEVEYINVMENPQKAMEYGIMAVPTI 60
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAF 69
++EF+ +C HC +L P K A +F
Sbjct: 45 VLEFFGYFCPHCAHLEPVLSKHAKSF 70
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 172 IER-GVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRM 215
+ER V+++E RH +I ++ + ++D+ K++DRL+RM
Sbjct: 362 LERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRM 406
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING ADENINE Opposite To 8-Oxog
Length = 291
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
D V+V +NFE + D G ++ G+ +A +EKV + +DVV+ N++
Sbjct: 11 DSVIVRNVENFELKDIFDCGQCFRWHRQENGNYIGIA--FEKVVEVQKIGEDVVIYNINE 68
Query: 83 DKYKDLAEKY 92
+++K++ +Y
Sbjct: 69 EEFKNVWSEY 78
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING CYTOSINE Opposite To 8-Oxog
Length = 290
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
D V+V +NFE + D G ++ G+ +A +EKV + +DVV+ N++
Sbjct: 11 DSVIVRNVENFELKDIFDCGQCFRWHRQENGNYIGIA--FEKVVEVQKIGEDVVIYNINE 68
Query: 83 DKYKDLAEKY 92
+++K++ +Y
Sbjct: 69 EEFKNVWSEY 78
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine Dna Glycosylase In Complex With
8-Oxoguanosine
Length = 292
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
D V+V +NFE + D G ++ G+ +A +EKV + +DVV+ N++
Sbjct: 11 DSVIVRNVENFELKDIFDCGQCFRWHRQENGNYIGIA--FEKVVEVQKIGEDVVIYNINE 68
Query: 83 DKYKDLAEKY 92
+++K++ +Y
Sbjct: 69 EEFKNVWSEY 78
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 176 VEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRM 215
V+++E RH +I ++ + ++D+ K++DRL+RM
Sbjct: 389 VDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRM 428
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 176 VEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRM 215
V+++E RH +I ++ + ++D+ K++DRL+RM
Sbjct: 389 VDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRM 428
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 176 VEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRM 215
V+++E RH +I ++ + ++D+ K++DRL+RM
Sbjct: 390 VDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRM 429
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 176 VEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRM 215
V+++E RH +I ++ + ++D+ K++DRL+RM
Sbjct: 389 VDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRM 428
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 176 VEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRM 215
V+++E RH +I ++ + ++D+ K++DRL+RM
Sbjct: 390 VDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRM 429
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 176 VEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRM 215
V+++E RH +I ++ + ++D+ K++DRL+RM
Sbjct: 391 VDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRM 430
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 176 VEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRM 215
V+++E RH +I ++ + ++D+ K++DRL+RM
Sbjct: 392 VDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRM 431
>pdb|3HSK|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
pdb|3HSK|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
Length = 381
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 71 LEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE-- 128
LE DVV + LDAD D+ + + +G + + + Y +D+ V +N
Sbjct: 92 LECDVVFSGLDADVAGDIEKSFVEAGLAVV-------SNAKNYRREKDVPLVVPIVNPEH 144
Query: 129 --------KCGTSRDGKG-------QLTSTAGIVASLDALVKEF 157
K S+ GK STAG+VA L LV++F
Sbjct: 145 IDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLKPLVEKF 188
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form
Length = 292
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
D V+V +NFE + D G ++ G+ +A +EKV + +DVV+ N++
Sbjct: 11 DSVIVRNVENFELKDIFDCGQCFRWHRQENGNYIGIA--FEKVVEVQKIGEDVVIYNINE 68
Query: 83 DKYKDLAEKY 92
+++K++ +Y
Sbjct: 69 EEFKNVWSEY 78
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAF 69
++EF+ +C HC +L P K A +F
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSKHAKSF 53
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 44 LVEFYAPWCGHCKNLAPTYEKVAAAF 69
++EF+ +C HC +L P K A +F
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSKHAKSF 53
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 10/137 (7%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEF----YAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 78
+D ++ E+ F K V + L+ F + +C K L ++ + E +
Sbjct: 7 EDKRIIKEEFFSKMVNPVK--LIVFIGKEHCQYCDQLKQLVQELSELTDKLSYE----IV 60
Query: 79 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG 138
+ D + K+LAEKY + P G G Y G +F +F+ + S+
Sbjct: 61 DFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTD 120
Query: 139 QLTSTAGIVASLDALVK 155
+ + V+ +D V+
Sbjct: 121 LMQDSKEEVSKIDKDVR 137
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVA--AAFTLEDDVVVAN---LD 81
T DN V +D+ L++F+A WC C + EK A A F+ + + VA+ L
Sbjct: 11 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH 70
Query: 82 ADKYKDLAEKYGVSGFPTL 100
K D + Y +P L
Sbjct: 71 EKKDGDFQKWYAGLNYPKL 89
>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
Length = 977
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 23/88 (26%)
Query: 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDAD--KYK---------- 86
D G L+ Y + G + PTYE+ FT + D AN ++ KY
Sbjct: 417 DHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPD 476
Query: 87 -DLAEKYGVSGFPTLKFFPKGNKDGEEY 113
DL E YG + PKG +DG++Y
Sbjct: 477 ADLNEAYG--------YLPKG-EDGKDY 495
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVA--AAFTLEDDVVVAN---LD 81
T DN V +D+ L++F+A WC C + EK A A F+ + + VA+ L
Sbjct: 10 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH 69
Query: 82 ADKYKDLAEKYGVSGFPTL 100
K D + Y +P L
Sbjct: 70 EKKDGDFQKWYAGLNYPKL 88
>pdb|2L57|A Chain A, Solution Structure Of An Uncharacterized Thioredoin-Like
Protein From Clostridium Perfringens
Length = 126
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102
++ F C +C + V+ + ++ A L+ +K DLA KY + PT F
Sbjct: 29 TIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVF 88
Query: 103 FPK-GNK 108
K GNK
Sbjct: 89 LDKEGNK 95
>pdb|3TQD|A Chain A, Structure Of The 3-Deoxy-D-Manno-Octulosonate
Cytidylyltransferase (Kdsb) From Coxiella Burnetii
Length = 256
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKV---AAAFTLEDDVVVA 78
A++VV+ T+D ++V +D GA+V C + E++ A A EDD ++
Sbjct: 49 AEEVVIATDDKRIRQVAEDFGAVV------CXTSSDHQSGTERIAEAAVALGFEDDEIIV 102
Query: 79 NLDADK 84
L D+
Sbjct: 103 CLQGDE 108
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 25/110 (22%)
Query: 43 ALVEFYAPWCGHCKNLAPTYEKVAAAF---------------------TLEDDVVVAN-- 79
LV+F+ C C+ P K AF +E+D N
Sbjct: 32 VLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQV 91
Query: 80 -LDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFIN 127
L D KD+ E Y + GFP + P+G +E G F+N
Sbjct: 92 LLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVN 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,182,861
Number of Sequences: 62578
Number of extensions: 316422
Number of successful extensions: 1259
Number of sequences better than 100.0: 206
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 221
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)