Query 026412
Match_columns 239
No_of_seqs 259 out of 1904
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 99.9 1.1E-26 2.4E-31 200.5 8.6 155 20-175 22-177 (493)
2 cd03006 PDI_a_EFP1_N PDIa fami 99.9 3.2E-25 7E-30 158.8 11.7 103 21-126 7-113 (113)
3 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.1E-24 4.6E-29 154.3 12.1 103 24-126 2-108 (108)
4 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 3.4E-24 7.3E-29 151.4 12.6 99 24-125 2-100 (101)
5 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 4.7E-24 1E-28 151.4 12.1 101 24-126 2-104 (104)
6 PTZ00443 Thioredoxin domain-co 99.9 3.6E-23 7.9E-28 164.7 17.4 109 22-133 29-142 (224)
7 PF07749 ERp29: Endoplasmic re 99.9 4.6E-24 1E-28 147.5 8.6 95 145-239 1-95 (95)
8 KOG0910 Thioredoxin-like prote 99.9 1.6E-23 3.5E-28 153.1 10.4 105 24-131 44-149 (150)
9 PF00085 Thioredoxin: Thioredo 99.9 5.8E-23 1.2E-27 145.2 12.8 102 25-129 1-103 (103)
10 cd03007 PDI_a_ERp29_N PDIa fam 99.9 3.3E-23 7.2E-28 147.6 11.2 100 24-129 2-115 (116)
11 PTZ00102 disulphide isomerase; 99.9 6.2E-23 1.3E-27 182.6 13.3 114 23-138 32-146 (477)
12 cd03002 PDI_a_MPD1_like PDI fa 99.9 2E-22 4.3E-27 144.2 12.5 100 25-126 2-108 (109)
13 cd02994 PDI_a_TMX PDIa family, 99.9 2.4E-22 5.1E-27 141.9 12.2 100 24-128 2-101 (101)
14 cd03065 PDI_b_Calsequestrin_N 99.9 1.3E-22 2.8E-27 146.3 11.0 106 23-130 9-119 (120)
15 cd02993 PDI_a_APS_reductase PD 99.9 3.9E-22 8.4E-27 142.8 11.9 102 24-126 2-109 (109)
16 cd03005 PDI_a_ERp46 PDIa famil 99.9 4.6E-22 1E-26 140.5 11.4 100 25-126 2-102 (102)
17 TIGR01126 pdi_dom protein disu 99.9 6.5E-22 1.4E-26 139.6 12.1 101 28-129 1-101 (102)
18 cd03001 PDI_a_P5 PDIa family, 99.9 1.2E-21 2.7E-26 138.5 12.7 100 25-126 2-102 (103)
19 cd02998 PDI_a_ERp38 PDIa famil 99.9 1E-21 2.2E-26 139.3 12.1 102 25-126 2-105 (105)
20 cd00238 ERp29c ERp29 and ERp38 99.9 3.1E-22 6.7E-27 137.2 8.9 91 148-238 2-93 (93)
21 cd02999 PDI_a_ERp44_like PDIa 99.9 6E-22 1.3E-26 139.4 10.1 90 32-126 8-100 (100)
22 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 1.4E-21 3E-26 138.4 11.6 102 24-126 1-104 (104)
23 cd02997 PDI_a_PDIR PDIa family 99.9 2E-21 4.3E-26 137.7 11.5 101 25-126 2-104 (104)
24 COG3118 Thioredoxin domain-con 99.9 1.7E-21 3.6E-26 157.1 12.3 108 22-132 22-132 (304)
25 cd02963 TRX_DnaJ TRX domain, D 99.9 1.6E-21 3.4E-26 140.0 10.8 100 27-128 8-110 (111)
26 PRK09381 trxA thioredoxin; Pro 99.9 7E-21 1.5E-25 136.3 13.0 106 22-130 2-108 (109)
27 cd02956 ybbN ybbN protein fami 99.9 3.8E-21 8.3E-26 134.4 11.1 94 31-127 1-96 (96)
28 PHA02278 thioredoxin-like prot 99.9 4.8E-21 1E-25 135.0 10.9 94 29-125 3-100 (103)
29 KOG0190 Protein disulfide isom 99.9 2E-21 4.3E-26 168.1 9.7 107 23-131 366-474 (493)
30 PRK10996 thioredoxin 2; Provis 99.9 1.2E-20 2.5E-25 140.7 12.6 105 22-129 34-138 (139)
31 cd02962 TMX2 TMX2 family; comp 99.9 1.8E-20 4E-25 140.8 13.6 92 22-115 27-126 (152)
32 cd02954 DIM1 Dim1 family; Dim1 99.8 5.1E-21 1.1E-25 136.0 9.3 84 30-116 2-87 (114)
33 TIGR01130 ER_PDI_fam protein d 99.8 4.3E-21 9.3E-26 169.9 11.0 151 24-174 2-153 (462)
34 cd02961 PDI_a_family Protein D 99.8 1.4E-20 3E-25 131.9 11.4 100 27-126 2-101 (101)
35 cd02948 TRX_NDPK TRX domain, T 99.8 2.6E-20 5.7E-25 131.7 11.9 98 27-128 4-101 (102)
36 cd02985 TRX_CDSP32 TRX family, 99.8 4.6E-20 9.9E-25 130.6 11.8 94 29-127 2-100 (103)
37 cd03000 PDI_a_TMX3 PDIa family 99.8 3.7E-20 8E-25 131.4 11.3 97 30-129 6-103 (104)
38 KOG0912 Thiol-disulfide isomer 99.8 3.5E-21 7.6E-26 154.5 6.0 148 28-175 1-151 (375)
39 cd02992 PDI_a_QSOX PDIa family 99.8 2.4E-19 5.3E-24 129.1 12.6 101 24-124 2-110 (114)
40 cd02953 DsbDgamma DsbD gamma f 99.8 1.1E-19 2.4E-24 128.9 10.2 94 31-126 2-103 (104)
41 cd02965 HyaE HyaE family; HyaE 99.8 1.5E-19 3.2E-24 127.7 10.3 99 22-123 9-109 (111)
42 TIGR00424 APS_reduc 5'-adenyly 99.8 2.3E-19 4.9E-24 156.2 13.5 106 22-128 350-461 (463)
43 TIGR01068 thioredoxin thioredo 99.8 4.9E-19 1.1E-23 124.4 12.2 99 28-129 1-100 (101)
44 PLN02309 5'-adenylylsulfate re 99.8 3.2E-19 6.8E-24 155.2 13.5 107 22-129 344-456 (457)
45 cd02950 TxlA TRX-like protein 99.8 5E-19 1.1E-23 132.3 12.4 100 30-131 10-111 (142)
46 KOG4277 Uncharacterized conser 99.8 6.7E-20 1.5E-24 147.1 7.8 110 22-135 27-137 (468)
47 PTZ00102 disulphide isomerase; 99.8 3.2E-19 7E-24 158.8 13.0 110 23-132 357-467 (477)
48 PLN00410 U5 snRNP protein, DIM 99.8 5.1E-19 1.1E-23 130.5 11.3 105 28-134 9-124 (142)
49 KOG0907 Thioredoxin [Posttrans 99.8 4.4E-19 9.6E-24 125.1 10.3 86 38-128 19-104 (106)
50 cd02989 Phd_like_TxnDC9 Phosdu 99.8 7.2E-19 1.6E-23 126.4 11.6 88 24-115 5-93 (113)
51 cd02957 Phd_like Phosducin (Ph 99.8 5.2E-19 1.1E-23 127.3 10.3 88 23-115 4-94 (113)
52 cd02984 TRX_PICOT TRX domain, 99.8 2.4E-18 5.3E-23 120.3 10.5 94 29-126 1-96 (97)
53 cd02949 TRX_NTR TRX domain, no 99.8 6.3E-18 1.4E-22 118.4 10.5 91 34-127 6-97 (97)
54 cd02975 PfPDO_like_N Pyrococcu 99.8 6.9E-18 1.5E-22 121.3 10.8 97 32-131 14-111 (113)
55 cd02986 DLP Dim1 family, Dim1- 99.8 5.9E-18 1.3E-22 119.4 10.0 82 30-113 2-85 (114)
56 PTZ00051 thioredoxin; Provisio 99.8 8.3E-18 1.8E-22 117.9 10.0 91 28-123 6-96 (98)
57 cd02951 SoxW SoxW family; SoxW 99.7 1.5E-17 3.3E-22 121.9 10.8 99 31-131 4-120 (125)
58 KOG0908 Thioredoxin-like prote 99.7 1.2E-17 2.5E-22 130.9 10.5 106 27-137 6-113 (288)
59 cd02987 Phd_like_Phd Phosducin 99.7 3.9E-17 8.4E-22 126.1 11.3 102 22-128 61-173 (175)
60 cd02947 TRX_family TRX family; 99.7 4.8E-17 1E-21 111.8 10.2 92 31-126 1-92 (93)
61 TIGR01295 PedC_BrcD bacterioci 99.7 1.2E-16 2.5E-21 116.3 11.3 99 24-127 7-121 (122)
62 TIGR01130 ER_PDI_fam protein d 99.7 1.1E-16 2.4E-21 141.7 12.3 107 23-131 346-455 (462)
63 cd02988 Phd_like_VIAF Phosduci 99.7 9.9E-16 2.1E-20 119.8 10.9 99 22-127 81-189 (192)
64 KOG0191 Thioredoxin/protein di 99.6 1E-15 2.2E-20 132.7 10.0 107 25-134 31-138 (383)
65 KOG1731 FAD-dependent sulfhydr 99.6 4.9E-16 1.1E-20 134.8 7.8 108 22-129 38-152 (606)
66 KOG0191 Thioredoxin/protein di 99.6 4.2E-15 9.1E-20 128.8 12.8 110 24-133 145-255 (383)
67 cd02982 PDI_b'_family Protein 99.6 5.8E-15 1.2E-19 104.3 11.2 95 33-129 5-102 (103)
68 TIGR02738 TrbB type-F conjugat 99.6 1.3E-14 2.7E-19 109.4 12.6 90 36-129 46-152 (153)
69 TIGR00411 redox_disulf_1 small 99.6 5.6E-15 1.2E-19 99.9 9.4 80 43-129 2-81 (82)
70 cd02959 ERp19 Endoplasmic reti 99.6 3.3E-15 7E-20 108.0 8.3 100 30-130 9-113 (117)
71 cd02952 TRP14_like Human TRX-r 99.6 5.7E-15 1.2E-19 106.2 8.8 77 29-107 8-101 (119)
72 PRK14018 trifunctional thiored 99.6 1.8E-14 3.9E-19 127.3 12.8 89 38-127 54-170 (521)
73 PTZ00062 glutaredoxin; Provisi 99.6 1.7E-14 3.8E-19 113.2 10.9 91 29-132 5-96 (204)
74 PRK03147 thiol-disulfide oxido 99.6 5E-14 1.1E-18 108.8 13.3 103 26-129 47-171 (173)
75 PRK15412 thiol:disulfide inter 99.6 4.7E-14 1E-18 110.3 13.2 88 38-130 66-176 (185)
76 TIGR02187 GlrX_arch Glutaredox 99.6 1.1E-14 2.5E-19 116.4 9.7 101 30-132 10-113 (215)
77 PRK00293 dipZ thiol:disulfide 99.5 5.7E-14 1.2E-18 127.0 12.4 98 29-129 459-569 (571)
78 PF13098 Thioredoxin_2: Thiore 99.5 2.4E-14 5.2E-19 102.6 7.1 87 38-126 3-112 (112)
79 TIGR02187 GlrX_arch Glutaredox 99.5 7.9E-14 1.7E-18 111.5 10.5 96 26-128 118-214 (215)
80 cd02955 SSP411 TRX domain, SSP 99.5 1.2E-13 2.5E-18 100.5 9.5 81 29-111 4-95 (124)
81 PHA02125 thioredoxin-like prot 99.5 2.1E-13 4.6E-18 90.6 8.1 70 44-125 2-72 (75)
82 TIGR02740 TraF-like TraF-like 99.5 6.3E-13 1.4E-17 109.5 11.2 89 39-131 165-265 (271)
83 cd03010 TlpA_like_DsbE TlpA-li 99.5 4E-13 8.7E-18 98.5 8.8 88 31-122 16-126 (127)
84 PF01216 Calsequestrin: Calseq 99.4 1.1E-13 2.3E-18 113.8 5.4 171 22-197 33-209 (383)
85 cd03009 TryX_like_TryX_NRX Try 99.4 6.6E-13 1.4E-17 97.9 9.2 72 38-109 16-112 (131)
86 cd03008 TryX_like_RdCVF Trypar 99.4 5.6E-13 1.2E-17 99.4 8.6 71 39-109 24-125 (146)
87 PF13905 Thioredoxin_8: Thiore 99.4 1.2E-12 2.5E-17 91.0 9.5 69 40-108 1-94 (95)
88 TIGR00385 dsbE periplasmic pro 99.4 9.1E-13 2E-17 101.9 9.7 89 38-131 61-172 (173)
89 cd02964 TryX_like_family Trypa 99.4 1.2E-12 2.5E-17 96.8 8.8 71 39-109 16-112 (132)
90 TIGR00412 redox_disulf_2 small 99.4 1.8E-12 3.9E-17 86.3 8.0 73 44-126 2-75 (76)
91 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 2.3E-12 5.1E-17 93.8 9.1 93 27-124 7-120 (123)
92 PF07912 ERp29_N: ERp29, N-ter 99.4 1.9E-11 4.1E-16 86.3 12.3 108 22-131 3-120 (126)
93 cd02973 TRX_GRX_like Thioredox 99.4 2.2E-12 4.8E-17 83.7 7.0 57 43-102 2-58 (67)
94 cd02966 TlpA_like_family TlpA- 99.4 3E-12 6.6E-17 91.2 8.3 86 29-115 8-116 (116)
95 PRK13728 conjugal transfer pro 99.4 1.2E-11 2.6E-16 95.0 12.0 85 44-132 73-173 (181)
96 cd02958 UAS UAS family; UAS is 99.3 2.5E-11 5.4E-16 87.3 10.8 92 37-130 14-111 (114)
97 TIGR01626 ytfJ_HI0045 conserve 99.3 2.6E-11 5.6E-16 93.7 11.4 84 38-126 57-176 (184)
98 COG2143 Thioredoxin-related pr 99.3 7.1E-11 1.5E-15 86.6 12.4 92 34-127 36-146 (182)
99 PLN02919 haloacid dehalogenase 99.3 1.8E-11 3.9E-16 117.8 10.7 92 39-131 419-537 (1057)
100 PRK11509 hydrogenase-1 operon 99.3 7.1E-11 1.5E-15 86.0 11.2 108 24-133 18-127 (132)
101 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 4.2E-11 9.2E-16 82.1 8.5 77 39-123 11-87 (89)
102 COG4232 Thiol:disulfide interc 99.2 5.2E-11 1.1E-15 104.9 10.1 103 26-129 457-567 (569)
103 cd03012 TlpA_like_DipZ_like Tl 99.2 6.3E-11 1.4E-15 86.8 8.7 77 39-116 22-125 (126)
104 cd02960 AGR Anterior Gradient 99.2 7E-11 1.5E-15 86.0 8.1 80 34-116 17-99 (130)
105 KOG0913 Thiol-disulfide isomer 99.2 4.9E-12 1.1E-16 98.8 1.8 105 22-131 23-127 (248)
106 smart00594 UAS UAS domain. 99.2 3.4E-10 7.3E-15 82.4 10.9 94 31-126 14-121 (122)
107 cd02967 mauD Methylamine utili 99.2 8.8E-11 1.9E-15 84.3 7.5 40 39-80 20-59 (114)
108 PTZ00056 glutathione peroxidas 99.2 1.6E-10 3.4E-15 91.2 8.8 44 39-83 38-81 (199)
109 PF08534 Redoxin: Redoxin; In 99.2 2.3E-10 4.9E-15 85.9 9.2 90 28-118 16-136 (146)
110 PLN02399 phospholipid hydroper 99.2 2.9E-10 6.2E-15 91.5 10.0 91 39-130 98-234 (236)
111 KOG0914 Thioredoxin-like prote 99.1 1.3E-10 2.9E-15 89.8 7.4 84 23-107 124-216 (265)
112 PF13899 Thioredoxin_7: Thiore 99.1 1.4E-10 3E-15 78.4 6.8 70 32-104 9-81 (82)
113 PLN02412 probable glutathione 99.1 6.2E-10 1.3E-14 85.5 8.8 92 39-131 28-165 (167)
114 TIGR02661 MauD methylamine deh 99.1 1.6E-09 3.6E-14 84.9 10.3 87 38-128 72-177 (189)
115 TIGR02540 gpx7 putative glutat 99.0 2.7E-09 5.8E-14 80.8 9.6 89 39-128 21-151 (153)
116 cd02969 PRX_like1 Peroxiredoxi 99.0 6.1E-09 1.3E-13 80.3 11.5 97 39-136 24-158 (171)
117 cd00340 GSH_Peroxidase Glutath 99.0 2E-09 4.4E-14 81.4 7.8 43 39-83 21-63 (152)
118 COG0526 TrxA Thiol-disulfide i 99.0 6.7E-09 1.5E-13 73.6 9.3 73 40-115 32-107 (127)
119 TIGR02196 GlrX_YruB Glutaredox 98.9 1.1E-08 2.4E-13 67.0 7.6 69 44-127 2-74 (74)
120 KOG2501 Thioredoxin, nucleored 98.8 4.4E-09 9.5E-14 78.2 5.0 72 38-109 31-128 (157)
121 PF03190 Thioredox_DsbH: Prote 98.8 6.6E-08 1.4E-12 72.9 11.2 85 22-108 19-114 (163)
122 cd02991 UAS_ETEA UAS family, E 98.8 7.8E-08 1.7E-12 69.2 9.8 88 38-130 15-113 (116)
123 cd03017 PRX_BCP Peroxiredoxin 98.8 2.8E-08 6.1E-13 73.8 7.5 85 39-124 22-137 (140)
124 cd01659 TRX_superfamily Thiore 98.7 4.7E-08 1E-12 61.4 6.7 60 44-106 1-63 (69)
125 TIGR02200 GlrX_actino Glutared 98.7 7.1E-08 1.5E-12 63.9 7.7 69 44-126 2-75 (77)
126 PTZ00256 glutathione peroxidas 98.7 6.5E-08 1.4E-12 75.4 8.6 44 39-83 39-83 (183)
127 PF00578 AhpC-TSA: AhpC/TSA fa 98.7 8E-08 1.7E-12 69.7 8.2 69 39-108 24-120 (124)
128 cd03015 PRX_Typ2cys Peroxiredo 98.7 1.2E-07 2.6E-12 73.3 9.2 90 39-129 28-156 (173)
129 PF13728 TraF: F plasmid trans 98.7 1.5E-07 3.3E-12 75.0 9.9 82 39-124 119-212 (215)
130 KOG2603 Oligosaccharyltransfer 98.7 4E-07 8.6E-12 74.5 11.5 113 22-134 39-170 (331)
131 PF02114 Phosducin: Phosducin; 98.7 1.6E-07 3.4E-12 77.1 9.1 102 23-129 125-237 (265)
132 PRK00522 tpx lipid hydroperoxi 98.6 2.5E-07 5.4E-12 71.1 9.4 42 39-83 43-85 (167)
133 cd02970 PRX_like2 Peroxiredoxi 98.6 2.2E-07 4.7E-12 69.6 8.6 45 40-85 24-68 (149)
134 PF13848 Thioredoxin_6: Thiore 98.6 1.6E-06 3.5E-11 67.2 13.4 106 21-128 75-184 (184)
135 TIGR03137 AhpC peroxiredoxin. 98.6 3.1E-07 6.8E-12 71.8 9.2 89 39-128 30-154 (187)
136 PF13192 Thioredoxin_3: Thiore 98.6 3.4E-07 7.3E-12 60.8 7.5 73 45-127 3-76 (76)
137 TIGR02180 GRX_euk Glutaredoxin 98.5 2.4E-07 5.2E-12 62.5 6.1 54 44-101 1-59 (84)
138 PF14595 Thioredoxin_9: Thiore 98.5 2.7E-07 5.9E-12 67.6 6.7 81 30-113 30-114 (129)
139 PRK09437 bcp thioredoxin-depen 98.5 6.3E-07 1.4E-11 67.8 8.7 80 39-119 29-142 (154)
140 KOG1672 ATP binding protein [P 98.5 2.3E-07 5E-12 70.8 5.7 88 24-115 67-155 (211)
141 cd02968 SCO SCO (an acronym fo 98.5 3.6E-07 7.8E-12 67.9 6.3 45 39-83 21-68 (142)
142 cd03018 PRX_AhpE_like Peroxire 98.5 1E-06 2.2E-11 66.0 8.7 43 40-83 28-71 (149)
143 PRK13190 putative peroxiredoxi 98.5 1.1E-06 2.3E-11 69.7 8.7 91 39-130 26-154 (202)
144 cd03014 PRX_Atyp2cys Peroxired 98.5 1E-06 2.2E-11 65.7 8.1 42 39-83 25-67 (143)
145 TIGR02739 TraF type-F conjugat 98.4 2.3E-06 4.9E-11 69.7 10.5 88 39-130 149-248 (256)
146 PRK10382 alkyl hydroperoxide r 98.4 2.2E-06 4.7E-11 66.9 9.9 90 39-129 30-155 (187)
147 PRK10877 protein disulfide iso 98.4 1E-06 2.2E-11 71.2 8.1 81 39-129 106-230 (232)
148 PRK15000 peroxidase; Provision 98.4 2E-06 4.3E-11 68.0 8.9 90 39-129 33-161 (200)
149 cd02971 PRX_family Peroxiredox 98.4 1.7E-06 3.7E-11 64.1 7.4 44 39-83 21-65 (140)
150 PF06110 DUF953: Eukaryotic pr 98.3 2.7E-06 5.8E-11 61.1 7.6 74 31-106 6-99 (119)
151 KOG3425 Uncharacterized conser 98.3 2.9E-06 6.3E-11 59.7 7.4 75 30-106 12-105 (128)
152 cd02976 NrdH NrdH-redoxin (Nrd 98.3 3.6E-06 7.9E-11 54.7 6.9 67 44-125 2-72 (73)
153 PRK13703 conjugal pilus assemb 98.3 8.9E-06 1.9E-10 65.9 10.3 86 40-129 143-240 (248)
154 cd02981 PDI_b_family Protein D 98.3 2E-05 4.4E-10 54.5 10.8 90 30-128 7-96 (97)
155 cd03072 PDI_b'_ERp44 PDIb' fam 98.3 1.9E-05 4.1E-10 56.4 10.8 102 25-130 1-108 (111)
156 TIGR03143 AhpF_homolog putativ 98.3 1E-05 2.3E-10 73.7 11.5 95 24-126 459-554 (555)
157 PRK15317 alkyl hydroperoxide r 98.3 1.3E-05 2.8E-10 72.4 11.8 100 24-131 99-199 (517)
158 PRK10954 periplasmic protein d 98.2 9.3E-06 2E-10 64.6 9.6 33 39-71 36-71 (207)
159 cd03016 PRX_1cys Peroxiredoxin 98.2 7.9E-06 1.7E-10 64.7 9.1 87 42-129 28-153 (203)
160 PRK11200 grxA glutaredoxin 1; 98.2 4.3E-06 9.4E-11 56.6 6.6 77 43-131 2-84 (85)
161 cd03020 DsbA_DsbC_DsbG DsbA fa 98.2 6.3E-06 1.4E-10 65.0 7.9 77 39-126 76-197 (197)
162 KOG0911 Glutaredoxin-related p 98.2 1.9E-06 4.1E-11 67.5 4.3 88 30-123 9-96 (227)
163 PF13462 Thioredoxin_4: Thiore 98.2 3.5E-05 7.5E-10 58.4 11.2 84 39-128 11-162 (162)
164 PRK13189 peroxiredoxin; Provis 98.2 1.3E-05 2.9E-10 64.3 8.8 90 39-129 34-162 (222)
165 PRK10606 btuE putative glutath 98.2 6.4E-06 1.4E-10 64.0 6.7 81 39-131 24-116 (183)
166 cd03023 DsbA_Com1_like DsbA fa 98.2 2.9E-05 6.3E-10 58.1 10.1 32 39-70 4-35 (154)
167 PTZ00137 2-Cys peroxiredoxin; 98.1 1.9E-05 4.2E-10 64.6 9.7 90 39-129 97-224 (261)
168 KOG3414 Component of the U4/U6 98.1 5.1E-05 1.1E-09 54.0 10.1 104 30-135 11-125 (142)
169 PRK13599 putative peroxiredoxi 98.1 2.1E-05 4.5E-10 62.9 8.8 89 40-129 28-155 (215)
170 PRK13191 putative peroxiredoxi 98.1 1.9E-05 4.1E-10 63.1 8.5 90 39-129 32-160 (215)
171 PF00462 Glutaredoxin: Glutare 98.1 2.3E-05 5.1E-10 49.2 6.9 51 44-102 1-55 (60)
172 cd03419 GRX_GRXh_1_2_like Glut 98.0 1.3E-05 2.8E-10 53.7 5.4 51 44-100 2-57 (82)
173 TIGR03140 AhpF alkyl hydropero 98.0 8.2E-05 1.8E-09 67.3 11.9 99 24-130 100-199 (515)
174 TIGR02183 GRXA Glutaredoxin, G 98.0 2.1E-05 4.5E-10 53.4 5.9 75 44-130 2-82 (86)
175 cd02983 P5_C P5 family, C-term 98.0 0.0004 8.7E-09 51.0 12.9 106 24-131 3-116 (130)
176 PTZ00253 tryparedoxin peroxida 98.0 5.5E-05 1.2E-09 59.8 8.9 90 39-129 35-163 (199)
177 cd03073 PDI_b'_ERp72_ERp57 PDI 98.0 0.0002 4.2E-09 51.1 10.6 99 27-129 3-110 (111)
178 PRK11657 dsbG disulfide isomer 97.9 0.00011 2.3E-09 60.2 10.3 83 40-127 117-249 (251)
179 PF05768 DUF836: Glutaredoxin- 97.9 3.4E-05 7.3E-10 51.8 6.1 79 44-127 2-81 (81)
180 PF07449 HyaE: Hydrogenase-1 e 97.8 8.8E-05 1.9E-09 52.1 7.1 96 22-120 8-105 (107)
181 TIGR02194 GlrX_NrdH Glutaredox 97.8 0.0001 2.2E-09 48.2 6.8 67 44-124 1-70 (72)
182 cd02066 GRX_family Glutaredoxi 97.8 7.2E-05 1.6E-09 48.2 6.1 50 44-101 2-55 (72)
183 TIGR02190 GlrX-dom Glutaredoxi 97.8 8.8E-05 1.9E-09 49.4 6.4 54 40-101 6-62 (79)
184 TIGR03143 AhpF_homolog putativ 97.7 0.00027 5.8E-09 64.6 10.6 93 40-135 366-459 (555)
185 TIGR02181 GRX_bact Glutaredoxi 97.7 0.0001 2.2E-09 49.0 5.4 49 44-100 1-53 (79)
186 PHA03050 glutaredoxin; Provisi 97.7 0.00018 3.9E-09 51.0 6.8 62 34-100 7-73 (108)
187 TIGR02189 GlrX-like_plant Glut 97.6 0.00015 3.2E-09 50.6 5.8 54 43-106 9-69 (99)
188 cd03418 GRX_GRXb_1_3_like Glut 97.6 0.00031 6.8E-09 46.0 6.7 50 44-101 2-56 (75)
189 PRK10329 glutaredoxin-like pro 97.6 0.00069 1.5E-08 45.4 8.4 71 44-129 3-76 (81)
190 cd02972 DsbA_family DsbA famil 97.6 0.00024 5.2E-09 48.5 6.3 59 44-104 1-91 (98)
191 PF02966 DIM1: Mitosis protein 97.6 0.001 2.3E-08 48.0 9.2 82 29-113 7-91 (133)
192 cd03019 DsbA_DsbA DsbA family, 97.5 0.00055 1.2E-08 52.6 8.4 32 39-70 14-45 (178)
193 cd03027 GRX_DEP Glutaredoxin ( 97.5 0.00049 1.1E-08 45.0 6.7 49 44-100 3-55 (73)
194 PF13848 Thioredoxin_6: Thiore 97.5 0.00019 4.1E-09 55.5 5.3 72 57-134 7-79 (184)
195 cd03067 PDI_b_PDIR_N PDIb fami 97.5 0.0016 3.6E-08 44.6 8.6 97 28-128 7-110 (112)
196 PF11009 DUF2847: Protein of u 97.4 0.0014 3E-08 45.8 7.8 92 29-122 6-104 (105)
197 cd03029 GRX_hybridPRX5 Glutare 97.4 0.00076 1.6E-08 43.9 6.2 66 44-126 3-71 (72)
198 COG0695 GrxC Glutaredoxin and 97.4 0.00067 1.5E-08 45.3 5.9 51 44-102 3-59 (80)
199 TIGR00365 monothiol glutaredox 97.3 0.0018 3.9E-08 44.9 7.5 60 33-101 5-72 (97)
200 PRK10638 glutaredoxin 3; Provi 97.2 0.0014 3.1E-08 44.0 6.1 50 44-101 4-57 (83)
201 COG1331 Highly conserved prote 97.2 0.0057 1.2E-07 55.8 11.3 85 22-108 25-120 (667)
202 PF13743 Thioredoxin_5: Thiore 97.1 0.002 4.3E-08 49.9 6.8 27 46-72 2-28 (176)
203 KOG3170 Conserved phosducin-li 97.1 0.0066 1.4E-07 47.0 9.3 101 23-129 91-200 (240)
204 cd03066 PDI_b_Calsequestrin_mi 97.0 0.027 5.9E-07 39.3 11.6 92 29-129 7-100 (102)
205 cd03028 GRX_PICOT_like Glutare 97.0 0.0034 7.4E-08 42.8 6.6 57 35-100 3-67 (90)
206 cd03069 PDI_b_ERp57 PDIb famil 96.8 0.03 6.6E-07 39.2 10.5 91 29-129 7-103 (104)
207 KOG2640 Thioredoxin [Function 96.8 0.00065 1.4E-08 56.0 2.0 87 40-131 76-163 (319)
208 KOG3171 Conserved phosducin-li 96.7 0.0082 1.8E-07 47.0 7.3 101 24-129 139-250 (273)
209 PRK10824 glutaredoxin-4; Provi 96.6 0.01 2.2E-07 42.5 6.5 59 33-100 8-74 (115)
210 PTZ00062 glutaredoxin; Provisi 96.4 0.015 3.2E-07 46.0 7.0 60 33-101 106-173 (204)
211 PRK12759 bifunctional gluaredo 96.4 0.0089 1.9E-07 52.5 6.2 51 44-102 4-66 (410)
212 PF00837 T4_deiodinase: Iodoth 96.2 0.053 1.1E-06 43.5 9.3 59 22-80 81-142 (237)
213 KOG1752 Glutaredoxin and relat 96.1 0.032 6.9E-07 39.1 6.8 62 33-102 7-73 (104)
214 COG1225 Bcp Peroxiredoxin [Pos 95.9 0.12 2.5E-06 39.1 9.3 90 38-128 28-154 (157)
215 cd02974 AhpF_NTD_N Alkyl hydro 95.6 0.19 4.2E-06 34.5 8.7 74 40-128 19-92 (94)
216 cd03013 PRX5_like Peroxiredoxi 95.3 0.052 1.1E-06 41.0 5.7 54 40-94 29-88 (155)
217 COG1651 DsbG Protein-disulfide 95.2 0.2 4.3E-06 40.6 9.4 28 41-68 85-112 (244)
218 PF01323 DSBA: DSBA-like thior 94.8 0.39 8.5E-06 37.1 9.7 27 43-69 1-27 (193)
219 PRK15317 alkyl hydroperoxide r 94.5 0.21 4.6E-06 45.3 8.6 83 40-136 18-100 (517)
220 cd03040 GST_N_mPGES2 GST_N fam 94.3 0.25 5.4E-06 32.1 6.4 76 44-131 2-77 (77)
221 cd03031 GRX_GRX_like Glutaredo 94.1 0.21 4.6E-06 37.4 6.4 50 44-101 2-65 (147)
222 COG3019 Predicted metal-bindin 94.1 1.1 2.3E-05 33.0 9.6 75 42-130 26-104 (149)
223 TIGR03140 AhpF alkyl hydropero 93.7 0.44 9.6E-06 43.2 8.9 84 40-136 18-101 (515)
224 cd03074 PDI_b'_Calsequestrin_C 93.3 1.9 4.2E-05 30.2 10.8 103 27-129 5-119 (120)
225 cd02977 ArsC_family Arsenate R 92.9 0.16 3.5E-06 35.5 3.8 79 44-130 1-87 (105)
226 cd03068 PDI_b_ERp72 PDIb famil 92.7 2.5 5.4E-05 29.7 10.3 91 29-128 7-106 (107)
227 cd03060 GST_N_Omega_like GST_N 92.3 0.4 8.7E-06 30.6 4.9 51 45-101 2-53 (71)
228 KOG2507 Ubiquitin regulatory p 92.1 1.3 2.9E-05 38.5 8.8 90 38-128 16-109 (506)
229 KOG1422 Intracellular Cl- chan 91.8 5.4 0.00012 31.5 11.1 93 51-158 20-113 (221)
230 PHA03075 glutaredoxin-like pro 91.5 0.34 7.3E-06 34.3 3.9 30 41-70 2-31 (123)
231 cd02978 KaiB_like KaiB-like fa 91.3 1 2.2E-05 29.3 5.7 60 43-103 3-62 (72)
232 cd03041 GST_N_2GST_N GST_N fam 89.7 1.1 2.4E-05 29.1 5.1 71 44-129 2-76 (77)
233 PF02630 SCO1-SenC: SCO1/SenC; 89.3 0.84 1.8E-05 35.1 4.9 59 25-83 37-97 (174)
234 TIGR02742 TrbC_Ftype type-F co 88.9 1.7 3.6E-05 31.8 5.9 22 85-106 60-81 (130)
235 PF13778 DUF4174: Domain of un 88.8 6.9 0.00015 28.0 9.5 90 38-128 8-110 (118)
236 COG1999 Uncharacterized protei 88.5 5.2 0.00011 31.7 9.0 76 28-103 55-137 (207)
237 COG4545 Glutaredoxin-related p 88.5 1.2 2.5E-05 29.0 4.2 21 45-65 5-25 (85)
238 TIGR01617 arsC_related transcr 88.4 1 2.2E-05 32.1 4.5 75 45-130 2-88 (117)
239 PF06053 DUF929: Domain of unk 88.0 3 6.6E-05 34.0 7.4 34 37-70 55-88 (249)
240 PRK01655 spxA transcriptional 87.5 1.1 2.4E-05 32.7 4.3 34 44-85 2-35 (131)
241 cd00570 GST_N_family Glutathio 87.5 1 2.2E-05 27.7 3.7 52 45-102 2-55 (71)
242 cd03037 GST_N_GRX2 GST_N famil 87.4 0.99 2.2E-05 28.7 3.7 51 45-101 2-52 (71)
243 TIGR02654 circ_KaiB circadian 87.3 3.1 6.7E-05 28.1 5.9 74 41-117 3-76 (87)
244 cd03051 GST_N_GTT2_like GST_N 87.2 1.5 3.3E-05 27.7 4.5 52 45-102 2-57 (74)
245 cd03035 ArsC_Yffb Arsenate Red 86.2 0.73 1.6E-05 32.3 2.7 20 44-63 1-20 (105)
246 PRK09301 circadian clock prote 85.9 3.9 8.5E-05 28.5 6.0 75 40-117 5-79 (103)
247 PF09673 TrbC_Ftype: Type-F co 85.7 2.2 4.9E-05 30.3 5.0 45 57-105 36-80 (113)
248 cd03059 GST_N_SspA GST_N famil 85.4 1.9 4.1E-05 27.3 4.2 69 45-128 2-71 (73)
249 PF13417 GST_N_3: Glutathione 84.7 4.8 0.0001 25.9 5.9 71 46-131 1-72 (75)
250 cd03036 ArsC_like Arsenate Red 84.6 0.98 2.1E-05 31.9 2.7 77 45-129 2-87 (111)
251 COG2761 FrnE Predicted dithiol 84.4 2.5 5.3E-05 33.9 5.1 43 87-134 175-217 (225)
252 cd03045 GST_N_Delta_Epsilon GS 83.8 2.4 5.2E-05 27.0 4.1 51 45-101 2-56 (74)
253 COG3531 Predicted protein-disu 82.0 3 6.5E-05 32.6 4.5 44 86-130 164-209 (212)
254 KOG4277 Uncharacterized conser 81.9 20 0.00042 30.2 9.4 90 38-130 248-351 (468)
255 cd03055 GST_N_Omega GST_N fami 80.0 5.4 0.00012 26.7 4.9 54 43-102 18-72 (89)
256 PRK12559 transcriptional regul 78.9 2.5 5.4E-05 30.9 3.2 79 44-130 2-87 (131)
257 cd03032 ArsC_Spx Arsenate Redu 76.7 3.2 7E-05 29.4 3.2 32 44-83 2-33 (115)
258 KOG2244 Highly conserved prote 73.0 48 0.001 30.4 9.9 105 26-132 98-221 (786)
259 KOG2757 Mannose-6-phosphate is 72.1 41 0.00089 29.1 8.9 49 186-234 182-233 (411)
260 PRK13730 conjugal transfer pil 72.1 7.8 0.00017 30.5 4.4 42 85-128 151-192 (212)
261 PRK13344 spxA transcriptional 71.7 4.9 0.00011 29.4 3.1 76 44-130 2-87 (132)
262 cd03025 DsbA_FrnE_like DsbA fa 71.4 6.6 0.00014 30.2 4.0 27 44-70 3-29 (193)
263 PF09851 SHOCT: Short C-termin 71.2 9.4 0.0002 20.2 3.4 25 206-230 2-27 (31)
264 KOG2792 Putative cytochrome C 70.5 25 0.00054 28.9 7.0 44 39-82 138-186 (280)
265 PF01216 Calsequestrin: Calseq 66.9 84 0.0018 27.1 13.1 110 22-131 248-369 (383)
266 cd02990 UAS_FAF1 UAS family, F 66.7 49 0.0011 24.4 10.4 89 37-130 18-133 (136)
267 PF00255 GSHPx: Glutathione pe 66.7 28 0.0006 24.5 5.9 45 38-84 19-63 (108)
268 PF04592 SelP_N: Selenoprotein 66.4 10 0.00022 30.6 4.1 46 38-83 24-71 (238)
269 COG0386 BtuE Glutathione perox 66.3 54 0.0012 24.7 8.3 74 25-101 10-95 (162)
270 PF07689 KaiB: KaiB domain; I 66.1 3 6.5E-05 27.8 0.9 54 47-101 3-56 (82)
271 PF04134 DUF393: Protein of un 65.1 15 0.00034 25.6 4.6 53 47-103 2-56 (114)
272 cd03056 GST_N_4 GST_N family, 65.1 17 0.00036 22.7 4.4 52 45-102 2-57 (73)
273 COG3634 AhpF Alkyl hydroperoxi 64.5 45 0.00098 29.0 7.7 95 26-128 101-196 (520)
274 cd03024 DsbA_FrnE DsbA family, 64.1 8.2 0.00018 29.9 3.2 36 86-126 165-200 (201)
275 TIGR03521 GldG gliding-associa 63.3 1.3E+02 0.0027 27.9 11.1 77 22-98 29-116 (552)
276 cd03033 ArsC_15kD Arsenate Red 61.4 11 0.00024 26.7 3.2 20 44-63 2-21 (113)
277 PF02402 Lysis_col: Lysis prot 61.3 3.9 8.4E-05 23.5 0.6 28 1-29 1-28 (46)
278 cd03022 DsbA_HCCA_Iso DsbA fam 60.9 12 0.00027 28.5 3.7 35 86-126 157-191 (192)
279 COG5429 Uncharacterized secret 60.6 91 0.002 25.3 8.5 81 41-129 42-140 (261)
280 PRK11622 hypothetical protein; 57.6 68 0.0015 28.0 8.2 18 31-48 27-46 (401)
281 COG5494 Predicted thioredoxin/ 56.0 1E+02 0.0022 24.6 9.3 73 47-130 16-88 (265)
282 PF09822 ABC_transp_aux: ABC-t 55.5 1.1E+02 0.0025 24.9 11.2 111 23-133 7-145 (271)
283 PF13956 Ibs_toxin: Toxin Ibs, 53.3 6.3 0.00014 18.1 0.5 6 1-6 1-6 (19)
284 cd03052 GST_N_GDAP1 GST_N fami 50.9 37 0.00079 21.6 4.1 51 45-101 2-56 (73)
285 cd03061 GST_N_CLIC GST_N famil 50.9 76 0.0016 21.5 5.9 68 50-132 20-88 (91)
286 PF05176 ATP-synt_10: ATP10 pr 50.1 1.2E+02 0.0025 25.0 7.7 92 33-126 116-246 (252)
287 cd03053 GST_N_Phi GST_N family 48.8 51 0.0011 20.7 4.6 69 44-127 2-74 (76)
288 PF07304 SRA1: Steroid recepto 47.1 32 0.00068 26.0 3.8 10 226-235 68-77 (157)
289 cd03025 DsbA_FrnE_like DsbA fa 46.8 20 0.00044 27.4 2.8 22 86-107 159-180 (193)
290 COG5567 Predicted small peripl 45.6 40 0.00086 20.5 3.2 21 1-21 1-21 (58)
291 PF15240 Pro-rich: Proline-ric 45.4 9.7 0.00021 29.3 0.8 22 10-31 5-26 (179)
292 PRK10386 curli assembly protei 44.4 21 0.00045 26.1 2.3 20 1-20 1-20 (130)
293 PF08194 DIM: DIM protein; In 44.4 36 0.00078 18.8 2.7 6 1-6 1-6 (36)
294 COG5510 Predicted small secret 44.3 32 0.0007 19.8 2.6 6 1-6 2-7 (44)
295 PF11287 DUF3088: Protein of u 43.2 1.2E+02 0.0026 21.5 6.6 78 51-132 23-109 (112)
296 COG1393 ArsC Arsenate reductas 42.2 33 0.00072 24.5 3.1 21 44-64 3-23 (117)
297 cd03049 GST_N_3 GST_N family, 41.3 81 0.0018 19.6 4.7 53 45-101 2-55 (73)
298 PF13605 DUF4141: Domain of un 41.3 35 0.00075 20.9 2.6 22 16-37 13-34 (55)
299 PF09654 DUF2396: Protein of u 40.5 10 0.00022 27.8 0.2 13 51-63 8-20 (161)
300 TIGR02652 conserved hypothetic 40.4 11 0.00023 27.8 0.3 13 51-63 11-23 (163)
301 cd03034 ArsC_ArsC Arsenate Red 40.2 31 0.00067 24.3 2.7 19 45-63 2-20 (112)
302 TIGR00014 arsC arsenate reduct 38.7 33 0.00072 24.2 2.7 20 45-64 2-21 (114)
303 KOG0912 Thiol-disulfide isomer 38.2 1.3E+02 0.0029 25.5 6.3 99 23-130 210-319 (375)
304 cd03021 DsbA_GSTK DsbA family, 36.6 65 0.0014 25.2 4.3 39 87-126 170-208 (209)
305 cd03030 GRX_SH3BGR Glutaredoxi 36.5 1.4E+02 0.0029 20.3 5.3 16 74-89 30-45 (92)
306 COG0450 AhpC Peroxiredoxin [Po 36.0 2.1E+02 0.0047 22.4 8.0 89 40-129 33-160 (194)
307 TIGR03765 ICE_PFL_4695 integra 36.0 48 0.001 23.2 2.9 16 86-101 83-98 (105)
308 PRK10081 entericidin B membran 35.6 49 0.0011 19.6 2.5 7 1-7 2-8 (48)
309 PF00879 Defensin_propep: Defe 35.3 1E+02 0.0022 18.6 4.0 13 38-50 37-49 (52)
310 KOG1651 Glutathione peroxidase 34.2 1.8E+02 0.004 22.2 6.0 96 25-131 19-126 (171)
311 PF05642 Sporozoite_P67: Sporo 33.9 3E+02 0.0065 25.6 8.2 94 118-238 337-430 (727)
312 COG3011 Predicted thiol-disulf 33.1 2E+02 0.0044 21.2 6.9 65 38-106 4-69 (137)
313 cd03058 GST_N_Tau GST_N family 32.2 1.1E+02 0.0023 19.1 4.1 69 45-128 2-72 (74)
314 PRK09973 putative outer membra 31.9 56 0.0012 21.9 2.7 22 1-22 1-22 (85)
315 COG0278 Glutaredoxin-related p 31.7 1.3E+02 0.0029 20.9 4.5 67 33-106 8-79 (105)
316 PF11072 DUF2859: Protein of u 30.8 71 0.0015 23.7 3.3 16 86-101 121-136 (142)
317 PRK10598 lipoprotein; Provisio 30.8 75 0.0016 24.8 3.6 37 1-38 1-37 (186)
318 PF08806 Sep15_SelM: Sep15/Sel 30.3 71 0.0015 21.0 3.0 34 96-129 41-75 (78)
319 KOG0095 GTPase Rab30, small G 30.2 85 0.0018 23.6 3.6 44 30-73 66-112 (213)
320 PRK09810 entericidin A; Provis 29.9 70 0.0015 18.2 2.5 6 1-6 2-7 (41)
321 PRK10853 putative reductase; P 28.8 67 0.0015 22.9 2.9 21 44-64 2-22 (118)
322 PRK09481 sspA stringent starva 28.2 1.3E+02 0.0027 23.5 4.7 76 41-131 8-84 (211)
323 PF06764 DUF1223: Protein of u 28.0 3E+02 0.0066 21.7 8.3 78 45-132 3-100 (202)
324 cd03024 DsbA_FrnE DsbA family, 27.8 92 0.002 23.9 3.8 25 46-70 3-27 (201)
325 PF10654 DUF2481: Protein of u 27.5 1.1E+02 0.0025 21.7 3.7 22 214-235 18-39 (126)
326 PF06953 ArsD: Arsenical resis 27.5 2.4E+02 0.0052 20.4 6.1 53 73-129 39-101 (123)
327 PRK10026 arsenate reductase; P 27.2 82 0.0018 23.3 3.2 21 44-64 4-24 (141)
328 COG3531 Predicted protein-disu 27.0 56 0.0012 25.8 2.3 27 43-69 3-29 (212)
329 PF11153 DUF2931: Protein of u 26.3 1.2E+02 0.0026 24.1 4.2 8 1-8 1-8 (216)
330 PF10913 DUF2706: Protein of u 25.7 1.2E+02 0.0025 18.2 2.9 23 1-23 1-23 (60)
331 TIGR01616 nitro_assoc nitrogen 25.4 1E+02 0.0022 22.3 3.4 21 44-64 3-23 (126)
332 COG5633 Predicted periplasmic 24.7 60 0.0013 23.2 1.9 27 1-29 1-27 (123)
333 cd03044 GST_N_EF1Bgamma GST_N 24.5 1.8E+02 0.0039 18.2 4.2 51 46-102 3-56 (75)
334 cd02067 B12-binding B12 bindin 24.1 2.5E+02 0.0055 19.4 5.3 68 28-95 37-104 (119)
335 TIGR01101 V_ATP_synt_F vacuola 24.0 2.7E+02 0.0059 19.8 6.7 54 72-131 58-114 (115)
336 KOG0855 Alkyl hydroperoxide re 23.7 1.3E+02 0.0029 23.1 3.7 61 38-106 88-156 (211)
337 KOG1364 Predicted ubiquitin re 23.7 2.3E+02 0.005 24.4 5.5 56 75-130 133-189 (356)
338 TIGR01672 AphA HAD superfamily 23.7 2E+02 0.0043 23.3 5.1 6 1-6 1-6 (237)
339 PF05643 DUF799: Putative bact 23.6 1.6E+02 0.0034 23.6 4.3 60 1-66 1-61 (215)
340 KOG2199 Signal transducing ada 23.4 62 0.0013 28.4 2.1 78 9-98 65-142 (462)
341 COG0295 Cdd Cytidine deaminase 23.4 48 0.001 24.4 1.3 13 50-62 86-98 (134)
342 PF09776 Mitoc_L55: Mitochondr 23.3 48 0.0011 23.6 1.3 22 95-116 43-64 (116)
343 PF12107 VEK-30: Plasminogen ( 23.1 84 0.0018 14.1 1.5 8 207-214 3-10 (17)
344 PF03960 ArsC: ArsC family; I 22.9 79 0.0017 21.9 2.4 72 47-129 1-83 (110)
345 PRK13791 lysozyme inhibitor; P 22.6 1.4E+02 0.0031 21.2 3.5 13 38-50 37-49 (113)
346 COG4814 Uncharacterized protei 22.6 3.8E+02 0.0082 22.3 6.3 51 53-103 56-107 (288)
347 PRK11443 lipoprotein; Provisio 22.5 63 0.0014 23.4 1.8 6 1-6 1-6 (124)
348 PF11777 DUF3316: Protein of u 22.5 86 0.0019 22.1 2.5 8 1-8 1-8 (114)
349 PF05290 Baculo_IE-1: Baculovi 22.0 1.2E+02 0.0027 22.2 3.1 35 205-239 41-76 (140)
350 COG0821 gcpE 1-hydroxy-2-methy 21.8 1.8E+02 0.0038 25.1 4.4 79 51-130 263-351 (361)
351 PF11839 DUF3359: Protein of u 21.7 97 0.0021 21.3 2.4 20 1-21 1-20 (96)
352 PF05404 TRAP-delta: Transloco 21.6 97 0.0021 23.7 2.7 50 1-50 1-50 (167)
353 KOG1731 FAD-dependent sulfhydr 21.5 6.7E+02 0.015 23.4 11.3 74 62-138 204-277 (606)
354 PF08971 GlgS: Glycogen synthe 21.5 1E+02 0.0023 19.5 2.3 32 203-234 12-51 (66)
355 COG2247 LytB Putative cell wal 21.2 2.4E+02 0.0053 24.1 5.1 56 1-59 1-68 (337)
356 PRK02922 glycogen synthesis pr 21.0 1.9E+02 0.0042 18.3 3.4 34 201-234 11-52 (67)
357 PRK01381 Trp operon repressor; 20.6 1.1E+02 0.0025 21.1 2.6 29 208-236 21-49 (99)
358 COG4588 AcfC Accessory coloniz 20.2 2.6E+02 0.0056 22.4 4.7 11 97-107 101-111 (252)
359 cd03022 DsbA_HCCA_Iso DsbA fam 20.1 1.3E+02 0.0027 22.8 3.2 25 46-70 3-27 (192)
360 smart00053 DYNc Dynamin, GTPas 20.1 4.8E+02 0.01 21.2 7.0 67 40-106 112-202 (240)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-26 Score=200.52 Aligned_cols=155 Identities=35% Similarity=0.662 Sum_probs=134.2
Q ss_pred hcCCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCC
Q 026412 20 ALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFP 98 (239)
Q Consensus 20 ~~~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P 98 (239)
.....|..|+.+||+..+..+..++|.||||||+||+++.|+|++.|+.+..+ +.+.+++|||+.+.++|.+|+|++||
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 34678999999999999999999999999999999999999999999998765 57999999999999999999999999
Q ss_pred eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhhhhhHHHHHHHhccchhHHHHHHHHHhh
Q 026412 99 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERG 175 (239)
Q Consensus 99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 175 (239)
|+.+|++|.. +..|.|+|+.+.++.|+.++.|++...........+.+..-+..+.+|+.+.......-+..+...
T Consensus 102 TlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l 177 (493)
T KOG0190|consen 102 TLKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKL 177 (493)
T ss_pred eEEEEecCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhc
Confidence 9999999944 799999999999999999999999988888888788888877777888875443333434444443
No 2
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=3.2e-25 Score=158.75 Aligned_cols=103 Identities=17% Similarity=0.321 Sum_probs=93.5
Q ss_pred cCCCcEEcChhhHHHH---hcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH-HHcCCCC
Q 026412 21 LADDVVVLTEDNFEKE---VGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA-EKYGVSG 96 (239)
Q Consensus 21 ~~~~v~~l~~~~f~~~---~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~-~~~~i~~ 96 (239)
..+.+.++++++|++. +.++++++|.||||||+||+.+.|.|+++++.++ +.+.+++|||+.+.++| ++|+|.+
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~--~~v~~~~Vd~d~~~~l~~~~~~I~~ 84 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS--DQVLFVAINCWWPQGKCRKQKHFFY 84 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEECCCChHHHHHhcCCcc
Confidence 3578999999999987 4889999999999999999999999999999986 35899999999999999 5899999
Q ss_pred CCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412 97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
+||+++|++| +.+.+|.|.++.+.|..|+
T Consensus 85 ~PTl~lf~~g-~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRS-RGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECC-ccceEEeCCCCHHHHHhhC
Confidence 9999999877 5678999999999999874
No 3
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.92 E-value=2.1e-24 Score=154.31 Aligned_cols=103 Identities=35% Similarity=0.652 Sum_probs=93.0
Q ss_pred CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC----CCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL----EDDVVVANLDADKYKDLAEKYGVSGFPT 99 (239)
Q Consensus 24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~----~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 99 (239)
.+.++++++|++.+.++++++|.||||||++|+++.|.|+++++.+.. .+.+.++.|||+.+++++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 578899999999998889999999999999999999999999987642 2358999999999999999999999999
Q ss_pred EEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412 100 LKFFPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 100 ~~~~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
+++|++|......|.|.++.+++.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999998854568899999999999985
No 4
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=3.4e-24 Score=151.40 Aligned_cols=99 Identities=31% Similarity=0.666 Sum_probs=91.5
Q ss_pred CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103 (239)
Q Consensus 24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 103 (239)
.+..++.++|++.+.++++++|.||+|||++|+.+.|.|+++++.++ +.+.++.|||++++.+|++|+|+++||+++|
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD--GVIRIGAVNCGDDRMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc--CceEEEEEeCCccHHHHHHcCCCccCEEEEE
Confidence 46789999999999888999999999999999999999999999986 4589999999999999999999999999999
Q ss_pred eCCCcCccccCCCCCHHHHHHH
Q 026412 104 PKGNKDGEEYGGGRDLEDFVSF 125 (239)
Q Consensus 104 ~~g~~~~~~~~g~~~~~~l~~~ 125 (239)
++| .....|.|.++.+.+.+|
T Consensus 80 ~~g-~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 80 PSG-MNPEKYYGDRSKESLVKF 100 (101)
T ss_pred cCC-CCcccCCCCCCHHHHHhh
Confidence 877 567889999999999887
No 5
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.91 E-value=4.7e-24 Score=151.43 Aligned_cols=101 Identities=33% Similarity=0.722 Sum_probs=92.5
Q ss_pred CcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412 24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 24 ~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 102 (239)
.+.+++.++|++.+ +++++++|.||++||++|+.+.|.|+++++.+. +.+.++.|||+++++++++|+|+++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALK--GKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 56789999999998 667899999999999999999999999999985 469999999999999999999999999999
Q ss_pred EeCCCcCccccCCCCC-HHHHHHHH
Q 026412 103 FPKGNKDGEEYGGGRD-LEDFVSFI 126 (239)
Q Consensus 103 ~~~g~~~~~~~~g~~~-~~~l~~~l 126 (239)
|++|++...+|.|..+ .+++.+||
T Consensus 80 ~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCceEccCCCCCHHHHHhhC
Confidence 9998677889999987 99999885
No 6
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.91 E-value=3.6e-23 Score=164.69 Aligned_cols=109 Identities=39% Similarity=0.731 Sum_probs=95.9
Q ss_pred CCCcEEcChhhHHHHhcC-----CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC
Q 026412 22 ADDVVVLTEDNFEKEVGQ-----DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG 96 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~-----~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 96 (239)
...+.++++++|++.+.. +++++|.||+|||+||+.+.|.|+++++.++ +.+.++.+|++++++++++|+|++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~--~~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK--GQVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC--CCeEEEEecCcccHHHHHHcCCCc
Confidence 456899999999998832 5799999999999999999999999999986 458999999999999999999999
Q ss_pred CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412 97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133 (239)
Q Consensus 97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~ 133 (239)
+||+++|++| +....+.|.++.+++.+|+.+.....
T Consensus 107 ~PTl~~f~~G-~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 107 YPTLLLFDKG-KMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CCEEEEEECC-EEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 9999999987 44455578899999999999887543
No 7
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=99.91 E-value=4.6e-24 Score=147.51 Aligned_cols=95 Identities=41% Similarity=0.667 Sum_probs=85.7
Q ss_pred chhhhhhHHHHHHHhccchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhCCCCchHHHHHHHHHHHhccCChhh
Q 026412 145 GIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAK 224 (239)
Q Consensus 145 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~~~ 224 (239)
|+++++|.++..|+.+.++++.+++++++.....+++....+++||+++|+||+++|++|+++|++||+++|+++++++|
T Consensus 1 G~i~~lD~la~~f~~~~~~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E~~RL~~lL~~~l~~~K 80 (95)
T PF07749_consen 1 GRIEELDELAAEFVAASDDEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKEIARLERLLEGKLSPEK 80 (95)
T ss_dssp T--HHHHHHHHHHHHS-CHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHHHHHHHHHHHSSS-HHH
T ss_pred CchHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHHHHHHHHHHhccCCHHH
Confidence 78999999999999988889999999999999888877678999999999999999999999999999999998899999
Q ss_pred hhHHHHhhhhhcccC
Q 026412 225 ADEFVLKKNILSTFT 239 (239)
Q Consensus 225 ~~~~~~r~nil~~f~ 239 (239)
+|+|+.|+|||++|+
T Consensus 81 ~del~~R~NIL~~F~ 95 (95)
T PF07749_consen 81 KDELQKRLNILSSFQ 95 (95)
T ss_dssp HHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999996
No 8
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-23 Score=153.11 Aligned_cols=105 Identities=30% Similarity=0.563 Sum_probs=96.9
Q ss_pred CcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412 24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 24 ~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 102 (239)
.+..++..+|++.+ +++.||+|.|||+||+||+.+.|.+++++..+. +.+.+++||.|++.+++.+|+|..+||+++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 46678899999988 889999999999999999999999999999985 689999999999999999999999999999
Q ss_pred EeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412 103 FPKGNKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
|++| +...++.|..+.+.+.+||++.++
T Consensus 122 fknG-e~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNG-EKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECC-EEeeeecccCCHHHHHHHHHHHhc
Confidence 9998 566889999999999999998753
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.90 E-value=5.8e-23 Score=145.17 Aligned_cols=102 Identities=43% Similarity=0.854 Sum_probs=94.4
Q ss_pred cEEcChhhHHHHhcC-CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412 25 VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103 (239)
Q Consensus 25 v~~l~~~~f~~~~~~-~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 103 (239)
|..+++++|++.+.+ +++++|.||++||++|+.+.|.|.++++.+.. ++.++.||+++++.++++|+|.++|++++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 467899999999965 89999999999999999999999999999874 899999999999999999999999999999
Q ss_pred eCCCcCccccCCCCCHHHHHHHHHHh
Q 026412 104 PKGNKDGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 104 ~~g~~~~~~~~g~~~~~~l~~~l~~~ 129 (239)
.+| +...+|.|.++.+.|.+||+++
T Consensus 79 ~~g-~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNG-KEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETT-EEEEEEESSSSHHHHHHHHHHH
T ss_pred ECC-cEEEEEECCCCHHHHHHHHHcC
Confidence 988 5556999999999999999874
No 10
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.90 E-value=3.3e-23 Score=147.64 Aligned_cols=100 Identities=22% Similarity=0.416 Sum_probs=87.4
Q ss_pred CcEEcChhhHHHHhcCCCcEEEEEEC--CCCh---HHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----cchhHHHHcC
Q 026412 24 DVVVLTEDNFEKEVGQDRGALVEFYA--PWCG---HCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----KYKDLAEKYG 93 (239)
Q Consensus 24 ~v~~l~~~~f~~~~~~~k~vlV~F~a--~wC~---~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----~~~~l~~~~~ 93 (239)
+++.|++.||++.+.+++.+||.||| |||+ ||+++.|++.+.+. ++.+++|||+ ++.+||++|+
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence 57899999999999999999999999 8888 77777777765543 4889999994 5788999999
Q ss_pred CC--CCCeEEEEeCCC-cCccccCCC-CCHHHHHHHHHHh
Q 026412 94 VS--GFPTLKFFPKGN-KDGEEYGGG-RDLEDFVSFINEK 129 (239)
Q Consensus 94 i~--~~Pt~~~~~~g~-~~~~~~~g~-~~~~~l~~~l~~~ 129 (239)
|+ +|||+++|++|+ ..+..|.|+ |+.+.|++||+++
T Consensus 76 I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 LDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99 999999999883 467899997 9999999999875
No 11
>PTZ00102 disulphide isomerase; Provisional
Probab=99.89 E-value=6.2e-23 Score=182.63 Aligned_cols=114 Identities=43% Similarity=0.848 Sum_probs=102.5
Q ss_pred CCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 23 ~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 101 (239)
..+..++.++|+..+.+++.++|.||||||++|+++.|.|.++++.+... .++.++.|||+.+.++|++|+|.++||++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 56789999999999988899999999999999999999999999887543 47999999999999999999999999999
Q ss_pred EEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCC
Q 026412 102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG 138 (239)
Q Consensus 102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~ 138 (239)
+|++|+. ..|.|.++.+.+.+|+.+.+++......
T Consensus 112 ~~~~g~~--~~y~g~~~~~~l~~~l~~~~~~~~~~i~ 146 (477)
T PTZ00102 112 FFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVTEVE 146 (477)
T ss_pred EEECCce--EEecCCCCHHHHHHHHHHhhCCCceeec
Confidence 9998843 3899999999999999999987765544
No 12
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.89 E-value=2e-22 Score=144.17 Aligned_cols=100 Identities=50% Similarity=0.865 Sum_probs=91.1
Q ss_pred cEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--chhHHHHcCCCCCCeEE
Q 026412 25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 25 v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~ 101 (239)
+.++++++|++.+ +++++++|.||++||++|+++.|.++++++.+. +.+.++.+||+. +++++++|+|+++||++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~--~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD--GLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhc--CCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 6789999999998 667889999999999999999999999999986 458899999998 88999999999999999
Q ss_pred EEeCCC----cCccccCCCCCHHHHHHHH
Q 026412 102 FFPKGN----KDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 102 ~~~~g~----~~~~~~~g~~~~~~l~~~l 126 (239)
+|++|+ .....|.|.++.+++.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 999886 3568899999999999997
No 13
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=2.4e-22 Score=141.91 Aligned_cols=100 Identities=35% Similarity=0.629 Sum_probs=88.7
Q ss_pred CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103 (239)
Q Consensus 24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 103 (239)
.+..++.++|++++.+ + ++|.|||+||++|+.+.|.|+++++.++ ..++.++.||+++++.++++|+|.++||+++|
T Consensus 2 ~v~~l~~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~-~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NVVELTDSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSD-DLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ceEEcChhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhc-cCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 5788999999998843 3 7899999999999999999999998764 34699999999999999999999999999999
Q ss_pred eCCCcCccccCCCCCHHHHHHHHHH
Q 026412 104 PKGNKDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 104 ~~g~~~~~~~~g~~~~~~l~~~l~~ 128 (239)
++| . ...|.|.++.+++.+|+++
T Consensus 79 ~~g-~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 79 KDG-V-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCC-C-EEEecCCCCHHHHHHHHhC
Confidence 877 3 4789999999999999863
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.89 E-value=1.3e-22 Score=146.26 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=92.3
Q ss_pred CCcEEcChhhHHHHh-cCCCcEEEEEECCCChH--Hh--hHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCC
Q 026412 23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGH--CK--NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 97 (239)
Q Consensus 23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~--C~--~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 97 (239)
..+..++++||++.+ +++.++++.||++||++ |+ .+.|.+.+++.++-..+++.+++||++++++++++|+|+++
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i 88 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE 88 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence 467889999999999 66668888899999976 99 88899999998873345799999999999999999999999
Q ss_pred CeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412 98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 130 (239)
||+++|++|. .. .|.|.++.+.+.+||.+..
T Consensus 89 PTl~lfk~G~-~v-~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 89 DSIYVFKDDE-VI-EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cEEEEEECCE-EE-EeeCCCCHHHHHHHHHHHh
Confidence 9999999884 44 4999999999999998753
No 15
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.88 E-value=3.9e-22 Score=142.80 Aligned_cols=102 Identities=31% Similarity=0.701 Sum_probs=90.6
Q ss_pred CcEEcChhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-chhHHH-HcCCCCCC
Q 026412 24 DVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAE-KYGVSGFP 98 (239)
Q Consensus 24 ~v~~l~~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-~~~l~~-~~~i~~~P 98 (239)
.|.+++.++|++++ .++++++|.||++||+||+++.|.|.++++.++ ..++.++.||++. +..++. .|+++++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~-~~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLA-GSNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc-cCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 57889999999998 357899999999999999999999999999987 3359999999997 577886 59999999
Q ss_pred eEEEEeCCCcCccccCCC-CCHHHHHHHH
Q 026412 99 TLKFFPKGNKDGEEYGGG-RDLEDFVSFI 126 (239)
Q Consensus 99 t~~~~~~g~~~~~~~~g~-~~~~~l~~~l 126 (239)
|+++|++|+..+..|.|. ++.++|+.||
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999887778899995 8999999985
No 16
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.88 E-value=4.6e-22 Score=140.49 Aligned_cols=100 Identities=41% Similarity=0.892 Sum_probs=90.0
Q ss_pred cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC-CCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103 (239)
Q Consensus 25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 103 (239)
+..+++++|++.+.++ +++|.||++||++|+.+.|.+.++++.+.. .+.+.++.|||+.+..++++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 5789999999999655 599999999999999999999999999865 34799999999999999999999999999999
Q ss_pred eCCCcCccccCCCCCHHHHHHHH
Q 026412 104 PKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 104 ~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
++| ....+|.|.++.+++.+||
T Consensus 81 ~~g-~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDG-EKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCC-CeeeEeeCCCCHHHHHhhC
Confidence 877 4667899999999998885
No 17
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.88 E-value=6.5e-22 Score=139.57 Aligned_cols=101 Identities=60% Similarity=1.089 Sum_probs=93.6
Q ss_pred cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 107 (239)
Q Consensus 28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 107 (239)
|++++|++.+.++++++|.||++||++|+.+.|.|+++++.+...+++.++.+|++.++.++++|+|.++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 57889999998899999999999999999999999999999876557999999999999999999999999999999886
Q ss_pred cCccccCCCCCHHHHHHHHHHh
Q 026412 108 KDGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 108 ~~~~~~~g~~~~~~l~~~l~~~ 129 (239)
. +..|.|..+.+++..||.++
T Consensus 81 ~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 K-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred c-ceeecCCCCHHHHHHHHHhc
Confidence 5 78999999999999999864
No 18
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.88 E-value=1.2e-21 Score=138.53 Aligned_cols=100 Identities=52% Similarity=0.900 Sum_probs=91.3
Q ss_pred cEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412 25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103 (239)
Q Consensus 25 v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 103 (239)
+.++++.+|++.+ .++++++|.||++||++|+++.|.|.++++.+. +.+.++.+|++++++++++|+|+++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALK--GIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 5788999999998 556679999999999999999999999999886 4699999999999999999999999999999
Q ss_pred eCCCcCccccCCCCCHHHHHHHH
Q 026412 104 PKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 104 ~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
++|......|.|+++.+++.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCCCCCHHHHHHHh
Confidence 98866778999999999999996
No 19
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.88 E-value=1e-21 Score=139.32 Aligned_cols=102 Identities=70% Similarity=1.225 Sum_probs=93.0
Q ss_pred cEEcChhhHHHHhc-CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-chhHHHHcCCCCCCeEEE
Q 026412 25 VVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 25 v~~l~~~~f~~~~~-~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~Pt~~~ 102 (239)
+.++++++|++.+. .+++++|.||++||++|+++.|.+.++++.++..+++.++.+|++. +++++++|+|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 57889999999884 5569999999999999999999999999998755679999999999 999999999999999999
Q ss_pred EeCCCcCccccCCCCCHHHHHHHH
Q 026412 103 FPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 103 ~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
|.+|+.....|.|.++.+++.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 998877788899999999999885
No 20
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=99.88 E-value=3.1e-22 Score=137.22 Aligned_cols=91 Identities=43% Similarity=0.724 Sum_probs=84.7
Q ss_pred hhhhHHHHHHHhccchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhCCCCchHHHHHHHHHHHhcc-CChhhhh
Q 026412 148 ASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKS-ISAAKAD 226 (239)
Q Consensus 148 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~-~~~~~~~ 226 (239)
+++|.++..|+.++++++.+++.++++....+++.+..+++||+++|+|+.++|.+|+++|++||+++|+++ ++++|+|
T Consensus 2 ~~lD~la~~f~~~~~~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~d 81 (93)
T cd00238 2 EELDELAKEFVDASDEERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKELARLERLLEKKGLAPEKAD 81 (93)
T ss_pred hhHHHHHHHHhccchhHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 578999999998877889999999999888888667789999999999999999999999999999999987 6999999
Q ss_pred HHHHhhhhhccc
Q 026412 227 EFVLKKNILSTF 238 (239)
Q Consensus 227 ~~~~r~nil~~f 238 (239)
+|+.|+|||++|
T Consensus 82 el~~R~NIL~~F 93 (93)
T cd00238 82 ELTRRLNILRSF 93 (93)
T ss_pred HHHHHHHHHhcC
Confidence 999999999998
No 21
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.87 E-value=6e-22 Score=139.43 Aligned_cols=90 Identities=24% Similarity=0.537 Sum_probs=80.4
Q ss_pred hHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cchhHHHHcCCCCCCeEEEEeCCCc
Q 026412 32 NFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGFPTLKFFPKGNK 108 (239)
Q Consensus 32 ~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~Pt~~~~~~g~~ 108 (239)
++..++ .++++++|.|||+||++|+.+.|.|+++++.++ ++.++.||++ ++++++++|+|.++||+++|++|
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-- 82 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-- 82 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--
Confidence 344444 678999999999999999999999999999985 4788999998 78999999999999999999877
Q ss_pred CccccCCCCCHHHHHHHH
Q 026412 109 DGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 109 ~~~~~~g~~~~~~l~~~l 126 (239)
...+|.|.++.+.+.+|+
T Consensus 83 ~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 83 PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred ceeEecCCCCHHHHHhhC
Confidence 578999999999999985
No 22
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.87 E-value=1.4e-21 Score=138.44 Aligned_cols=102 Identities=48% Similarity=0.951 Sum_probs=91.3
Q ss_pred CcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412 24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 24 ~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 102 (239)
.+..+++++|++.+ +.+++++|.||++||++|+.+.|.|.++++.++...++.++.+|++.+ +++..+++.++|++++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 36789999999998 556899999999999999999999999999987656799999999987 6888999999999999
Q ss_pred EeCCC-cCccccCCCCCHHHHHHHH
Q 026412 103 FPKGN-KDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 103 ~~~g~-~~~~~~~g~~~~~~l~~~l 126 (239)
|++|+ .....|.|.++.+.+.+||
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHHHhhC
Confidence 99886 3577899999999999985
No 23
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.87 E-value=2e-21 Score=137.67 Aligned_cols=101 Identities=44% Similarity=0.853 Sum_probs=91.8
Q ss_pred cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--chhHHHHcCCCCCCeEEE
Q 026412 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~ 102 (239)
+..+++.+|++.+.++++++|.||++||++|+.+.|.+.++++.+...+.+.++.+|++. ++.++++|+|+++||+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 567889999999988889999999999999999999999999998755678999999997 899999999999999999
Q ss_pred EeCCCcCccccCCCCCHHHHHHHH
Q 026412 103 FPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 103 ~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
|++| +....|.|..+.+.+.+||
T Consensus 82 ~~~g-~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 82 FENG-KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EeCC-CeeEEeCCCCCHHHHHhhC
Confidence 9887 5677899999999999885
No 24
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.7e-21 Score=157.07 Aligned_cols=108 Identities=33% Similarity=0.654 Sum_probs=99.5
Q ss_pred CCCcEEcChhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412 22 ADDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 98 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 98 (239)
...+.++|..||.+.+ ...+||+|+||+|||++|+.+.|.+++++..++ +.+.+++||||.+++++.+|||+++|
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~~p~vAaqfgiqsIP 99 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDAEPMVAAQFGVQSIP 99 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC--CceEEEEecCCcchhHHHHhCcCcCC
Confidence 4569999999999998 445699999999999999999999999999986 68999999999999999999999999
Q ss_pred eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412 99 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 132 (239)
Q Consensus 99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~ 132 (239)
|++.|.+| ..+.-|.|....+.+.+|+.+..+.
T Consensus 100 tV~af~dG-qpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 100 TVYAFKDG-QPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eEEEeeCC-cCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999998 5678899999999999999998876
No 25
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.87 E-value=1.6e-21 Score=140.01 Aligned_cols=100 Identities=21% Similarity=0.374 Sum_probs=88.5
Q ss_pred EcChhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412 27 VLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103 (239)
Q Consensus 27 ~l~~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 103 (239)
.++..+|++.+ ..+++++|.||+|||++|+.+.|.++++++.+.. .++.++.||++.++.++++|+|.++||+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 45778898655 3689999999999999999999999999999863 2589999999999999999999999999999
Q ss_pred eCCCcCccccCCCCCHHHHHHHHHH
Q 026412 104 PKGNKDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 104 ~~g~~~~~~~~g~~~~~~l~~~l~~ 128 (239)
++| +....+.|..+.+.+.+||.+
T Consensus 87 ~~g-~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 ING-QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECC-EEEEEecCCCCHHHHHHHHhc
Confidence 877 566777899999999999975
No 26
>PRK09381 trxA thioredoxin; Provisional
Probab=99.86 E-value=7e-21 Score=136.25 Aligned_cols=106 Identities=33% Similarity=0.693 Sum_probs=94.9
Q ss_pred CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412 22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 100 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 100 (239)
+..+..+++++|.+.+ +.+++++|.||++||++|+.+.|.++++++.+. +.+.++.+|++.++.++++|++.++||+
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC--CCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 3568889999999865 778999999999999999999999999999986 3689999999999999999999999999
Q ss_pred EEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412 101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 130 (239)
++|++| +...++.|..+.+++.+||...+
T Consensus 80 ~~~~~G-~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNG-EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence 999876 56677889999999999998764
No 27
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.86 E-value=3.8e-21 Score=134.39 Aligned_cols=94 Identities=24% Similarity=0.545 Sum_probs=83.6
Q ss_pred hhHHHHh-cC-CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCc
Q 026412 31 DNFEKEV-GQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 108 (239)
Q Consensus 31 ~~f~~~~-~~-~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 108 (239)
++|++.+ ++ +++++|.||++||++|+.+.|.++++++.++ +.+.++.||++.+++++++|+|.++|++++|++| +
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~ 77 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ--GQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG-Q 77 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC-E
Confidence 3677777 34 6799999999999999999999999999986 3588999999999999999999999999999866 5
Q ss_pred CccccCCCCCHHHHHHHHH
Q 026412 109 DGEEYGGGRDLEDFVSFIN 127 (239)
Q Consensus 109 ~~~~~~g~~~~~~l~~~l~ 127 (239)
....+.|..+.+++.+||+
T Consensus 78 ~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 78 PVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EeeeecCCCCHHHHHHHhC
Confidence 6678999999999999873
No 28
>PHA02278 thioredoxin-like protein
Probab=99.86 E-value=4.8e-21 Score=134.99 Aligned_cols=94 Identities=13% Similarity=0.203 Sum_probs=82.1
Q ss_pred ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCCCeEEEEe
Q 026412 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFP 104 (239)
Q Consensus 29 ~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~ 104 (239)
+-++|.+.+.++++++|.|||+||++|+.+.|.++++++.+. ..+.++.||++.+ ++++++|+|.++||+++|+
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGD--IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc--CCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 356888988889999999999999999999999999998753 3467889999865 6899999999999999999
Q ss_pred CCCcCccccCCCCCHHHHHHH
Q 026412 105 KGNKDGEEYGGGRDLEDFVSF 125 (239)
Q Consensus 105 ~g~~~~~~~~g~~~~~~l~~~ 125 (239)
+| +...++.|..+.+.+.++
T Consensus 81 ~G-~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DG-QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CC-EEEEEEeCCCCHHHHHhh
Confidence 87 677888998888888765
No 29
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2e-21 Score=168.12 Aligned_cols=107 Identities=44% Similarity=0.855 Sum_probs=97.3
Q ss_pred CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412 23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 101 (239)
.+|..+..+||+.++ +.+|.|+|.||||||+||+++.|.|+++|+.++++++++++++|.+.|. .....++++|||+
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~ 443 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTIL 443 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEE
Confidence 468889999999999 8899999999999999999999999999999999889999999999775 3456788899999
Q ss_pred EEeCCCc-CccccCCCCCHHHHHHHHHHhhC
Q 026412 102 FFPKGNK-DGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 102 ~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
+|+.|++ .+..|.|.|+.++|..|+.+..+
T Consensus 444 ~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 444 FFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 9999875 58999999999999999987654
No 30
>PRK10996 thioredoxin 2; Provisional
Probab=99.85 E-value=1.2e-20 Score=140.74 Aligned_cols=105 Identities=28% Similarity=0.623 Sum_probs=95.6
Q ss_pred CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 101 (239)
...+..++..+|++.+.++++++|.||++||++|+.+.|.+.++++.+. +++.++.+|++++++++++|+|.++|+++
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~V~~~Ptli 111 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS--GKVRFVKVNTEAERELSARFRIRSIPTIM 111 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence 4567789999999999889999999999999999999999999998875 46999999999999999999999999999
Q ss_pred EEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412 102 FFPKGNKDGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 129 (239)
+|++| +....+.|..+.+.+.+|+++.
T Consensus 112 i~~~G-~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 112 IFKNG-QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence 99876 6677889999999999999875
No 31
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.85 E-value=1.8e-20 Score=140.75 Aligned_cols=92 Identities=25% Similarity=0.554 Sum_probs=80.6
Q ss_pred CCCcEEcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC---
Q 026412 22 ADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--- 96 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--- 96 (239)
...+.++++++|++.+ ..+++++|.||+|||++|+.+.|.++++++.+.. .++.++.||++++++++++|+|.+
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecCC
Confidence 4578899999999988 3457899999999999999999999999999853 359999999999999999999988
Q ss_pred ---CCeEEEEeCCCcCccccCC
Q 026412 97 ---FPTLKFFPKGNKDGEEYGG 115 (239)
Q Consensus 97 ---~Pt~~~~~~g~~~~~~~~g 115 (239)
+||+++|++| +...++.|
T Consensus 106 v~~~PT~ilf~~G-k~v~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQGG-KEVARRPY 126 (152)
T ss_pred cCCCCEEEEEECC-EEEEEEec
Confidence 9999999987 55566665
No 32
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.85 E-value=5.1e-21 Score=136.01 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=73.9
Q ss_pred hhhHHHHhc--CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412 30 EDNFEKEVG--QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 107 (239)
Q Consensus 30 ~~~f~~~~~--~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 107 (239)
.++|++.+. ++++++|.|||+||++|+.|.|.++++++.++ +.+.|++||++++++++++|+|.++||+++|++|
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~--~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G- 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS--NFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN- 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc--CceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC-
Confidence 567888883 68899999999999999999999999999986 3478999999999999999999999999999988
Q ss_pred cCccccCCC
Q 026412 108 KDGEEYGGG 116 (239)
Q Consensus 108 ~~~~~~~g~ 116 (239)
+......|.
T Consensus 79 ~~v~~~~G~ 87 (114)
T cd02954 79 KHMKIDLGT 87 (114)
T ss_pred EEEEEEcCC
Confidence 555566554
No 33
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.85 E-value=4.3e-21 Score=169.92 Aligned_cols=151 Identities=39% Similarity=0.708 Sum_probs=116.0
Q ss_pred CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 102 (239)
.+..++.++|+..+.++++++|.||||||++|+++.|.|.++++.+... +++.++.|||+.++++|++|+|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 4678999999999988999999999999999999999999999887643 469999999999999999999999999999
Q ss_pred EeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhhhhhHHHHHHHhccchhHHHHHHHHHh
Q 026412 103 FPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIER 174 (239)
Q Consensus 103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 174 (239)
|++|......|.|.++.+.+.+|+.+.+++..............+..-+..++.|+.+.++.....+.+++.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~ 153 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAE 153 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHH
Confidence 998843268899999999999999999886655443333323333332223334444434344444444443
No 34
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.85 E-value=1.4e-20 Score=131.92 Aligned_cols=100 Identities=52% Similarity=0.991 Sum_probs=91.7
Q ss_pred EcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412 27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 106 (239)
Q Consensus 27 ~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 106 (239)
+++.++|.+.+.++++++|.||++||++|+.+.|.|.++++.++..+.+.++.+|++.+..++++|+|+++|++++|+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 57889999999877899999999999999999999999999985446799999999999999999999999999999888
Q ss_pred CcCccccCCCCCHHHHHHHH
Q 026412 107 NKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 107 ~~~~~~~~g~~~~~~l~~~l 126 (239)
+....+|.|..+.+++.+|+
T Consensus 82 ~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CcccccCCCCcCHHHHHhhC
Confidence 67788999999999998875
No 35
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.84 E-value=2.6e-20 Score=131.65 Aligned_cols=98 Identities=22% Similarity=0.413 Sum_probs=85.2
Q ss_pred EcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412 27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 106 (239)
Q Consensus 27 ~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 106 (239)
..+.++|+..+.++++++|.|||+||++|+.+.|.++++++.++. ..+.++.+|+| +.+++++|+|+++||+++|++|
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 357889999998899999999999999999999999999999863 35789999999 7789999999999999999877
Q ss_pred CcCccccCCCCCHHHHHHHHHH
Q 026412 107 NKDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 107 ~~~~~~~~g~~~~~~l~~~l~~ 128 (239)
+...+..|. +++.+.++|.+
T Consensus 82 -~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 82 -ELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred -EEEEEEecC-ChHHHHHHHhh
Confidence 555666674 88999988864
No 36
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.84 E-value=4.6e-20 Score=130.64 Aligned_cols=94 Identities=18% Similarity=0.347 Sum_probs=80.0
Q ss_pred ChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch---hHHHHcCCCCCCeEEEE
Q 026412 29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---DLAEKYGVSGFPTLKFF 103 (239)
Q Consensus 29 ~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~~ 103 (239)
+.++|++.+ .++++++|.|||+||++|+.+.|.++++++.+ +++.++.||++++. +++++|+|.++||+++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC---CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 467888888 34899999999999999999999999999998 36899999999764 89999999999999999
Q ss_pred eCCCcCccccCCCCCHHHHHHHHH
Q 026412 104 PKGNKDGEEYGGGRDLEDFVSFIN 127 (239)
Q Consensus 104 ~~g~~~~~~~~g~~~~~~l~~~l~ 127 (239)
++| +...++.|. .++++.+-+.
T Consensus 79 ~~G-~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 79 KDG-EKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred eCC-eEEEEEeCC-CHHHHHHHHH
Confidence 877 667788884 5667766554
No 37
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.84 E-value=3.7e-20 Score=131.39 Aligned_cols=97 Identities=39% Similarity=0.788 Sum_probs=84.8
Q ss_pred hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCc
Q 026412 30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 108 (239)
Q Consensus 30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 108 (239)
+++|+++ .++++++|.||++||++|+.+.|.|+++++.++.. .++.++.+|++.++.++++|+|.++||+++|.+|
T Consensus 6 ~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-- 82 (104)
T cd03000 6 DDSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-- 82 (104)
T ss_pred hhhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC--
Confidence 4788875 45779999999999999999999999999988643 3589999999999999999999999999999654
Q ss_pred CccccCCCCCHHHHHHHHHHh
Q 026412 109 DGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 109 ~~~~~~g~~~~~~l~~~l~~~ 129 (239)
....|.|..+.+++.+|+++.
T Consensus 83 ~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 83 LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CceeecCCCCHHHHHHHHHhh
Confidence 456789999999999999863
No 38
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.83 E-value=3.5e-21 Score=154.45 Aligned_cols=148 Identities=28% Similarity=0.493 Sum_probs=115.1
Q ss_pred cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC---CCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL---EDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP 104 (239)
Q Consensus 28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~---~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 104 (239)
++..|++.+++.+..++|.|||+||++++.++|.|++.|..++. ++.++++.|||+.+..++++|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 35678999999999999999999999999999999998876532 368999999999999999999999999999999
Q ss_pred CCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhhhhhHHHHHHHhccchhHHHHHHHHHhh
Q 026412 105 KGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERG 175 (239)
Q Consensus 105 ~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 175 (239)
+|......|.|.|+.+.+.+||+++...+......+.+.......-...+++|+.+.+......+.+++..
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~ 151 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASL 151 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHH
Confidence 99555569999999999999999998765444333333222222222344567765555555666666553
No 39
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.82 E-value=2.4e-19 Score=129.14 Aligned_cols=101 Identities=39% Similarity=0.760 Sum_probs=83.6
Q ss_pred CcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCc--cchhHHHHcCCCCCCe
Q 026412 24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDAD--KYKDLAEKYGVSGFPT 99 (239)
Q Consensus 24 ~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~--~~~~l~~~~~i~~~Pt 99 (239)
.+.+++.++|++.+ .++++++|.||++||++|+.+.|.|+++++.++.. +.+.++.+||+ .+++++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 57889999999998 55579999999999999999999999999988643 35899999986 4678999999999999
Q ss_pred EEEEeCCCcC---ccccCCC-CCHHHHHH
Q 026412 100 LKFFPKGNKD---GEEYGGG-RDLEDFVS 124 (239)
Q Consensus 100 ~~~~~~g~~~---~~~~~g~-~~~~~l~~ 124 (239)
+++|++|.+. ...|.|+ +..+.+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 9999888532 3566666 66665543
No 40
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.82 E-value=1.1e-19 Score=128.93 Aligned_cols=94 Identities=28% Similarity=0.476 Sum_probs=83.1
Q ss_pred hhHHHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCcc----chhHHHHcCCCCCCeEEEE
Q 026412 31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLKFF 103 (239)
Q Consensus 31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~ 103 (239)
+.|.+.+.++++++|.||++||++|+.+.|.+ .++++.+.. ++.++.||+++ ...++++|+|.++||+++|
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 56888888899999999999999999999988 678887753 79999999986 5789999999999999999
Q ss_pred eC-CCcCccccCCCCCHHHHHHHH
Q 026412 104 PK-GNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 104 ~~-g~~~~~~~~g~~~~~~l~~~l 126 (239)
++ +++.+.++.|..+.++|.++|
T Consensus 80 ~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 80 GPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCCCcccccccCHHHHHHHh
Confidence 86 457788999999999999887
No 41
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.82 E-value=1.5e-19 Score=127.69 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=89.8
Q ss_pred CCCcEEcChhhHHHHhcCCCcEEEEEECCC--ChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~w--C~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 99 (239)
..++..++..||++.+..+.+++|.||++| ||+|+.+.|.+++++++++ +.+.++.||+++++.++.+|+|+++||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~--~~v~f~kVdid~~~~la~~f~V~sIPT 86 (111)
T cd02965 9 RHGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP--GRFRAAVVGRADEQALAARFGVLRTPA 86 (111)
T ss_pred hcCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC--CcEEEEEEECCCCHHHHHHcCCCcCCE
Confidence 356788999999999988899999999997 9999999999999999986 458899999999999999999999999
Q ss_pred EEEEeCCCcCccccCCCCCHHHHH
Q 026412 100 LKFFPKGNKDGEEYGGGRDLEDFV 123 (239)
Q Consensus 100 ~~~~~~g~~~~~~~~g~~~~~~l~ 123 (239)
+++|++| +....+.|..+.+++.
T Consensus 87 li~fkdG-k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDG-RYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECC-EEEEEEeCccCHHHHh
Confidence 9999988 6677888988888775
No 42
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.81 E-value=2.3e-19 Score=156.19 Aligned_cols=106 Identities=31% Similarity=0.615 Sum_probs=93.1
Q ss_pred CCCcEEcChhhHHHHhc---CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-hHH-HHcCCCC
Q 026412 22 ADDVVVLTEDNFEKEVG---QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-DLA-EKYGVSG 96 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~---~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-~l~-~~~~i~~ 96 (239)
+..|..++.+||++.+. .++++||.||||||++|+.+.|.|+++++.++.. ++.++.||+|.+. .++ ++|+|.+
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence 56889999999999984 7889999999999999999999999999998643 4889999998653 454 7899999
Q ss_pred CCeEEEEeCCCcCccccC-CCCCHHHHHHHHHH
Q 026412 97 FPTLKFFPKGNKDGEEYG-GGRDLEDFVSFINE 128 (239)
Q Consensus 97 ~Pt~~~~~~g~~~~~~~~-g~~~~~~l~~~l~~ 128 (239)
+||+++|++|...+..|. |.++.+.|..||+.
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999999876778897 58999999999985
No 43
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.81 E-value=4.9e-19 Score=124.41 Aligned_cols=99 Identities=36% Similarity=0.746 Sum_probs=87.5
Q ss_pred cChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412 28 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 106 (239)
Q Consensus 28 l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 106 (239)
++.++|.+.+ ..+++++|.||++||++|+.+.|.+.++++.+. +++.++.+|++.++.++++|+|.++|++++|++|
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYE--GKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 3577898888 446699999999999999999999999998875 4699999999999999999999999999999876
Q ss_pred CcCccccCCCCCHHHHHHHHHHh
Q 026412 107 NKDGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 107 ~~~~~~~~g~~~~~~l~~~l~~~ 129 (239)
+....+.|..+.+.+.+|+++.
T Consensus 79 -~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 -KEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred -cEeeeecCCCCHHHHHHHHHhh
Confidence 4557778999999999999864
No 44
>PLN02309 5'-adenylylsulfate reductase
Probab=99.81 E-value=3.2e-19 Score=155.24 Aligned_cols=107 Identities=32% Similarity=0.637 Sum_probs=95.7
Q ss_pred CCCcEEcChhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cchhHHH-HcCCCC
Q 026412 22 ADDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAE-KYGVSG 96 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~-~~~i~~ 96 (239)
...+..++.++|++++ +.+++++|.||||||++|+.+.|.|+++++.+... ++.|+.||++ .+.+++. +|+|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence 4578999999999987 57899999999999999999999999999998643 6999999999 7788886 699999
Q ss_pred CCeEEEEeCCCcCccccCC-CCCHHHHHHHHHHh
Q 026412 97 FPTLKFFPKGNKDGEEYGG-GRDLEDFVSFINEK 129 (239)
Q Consensus 97 ~Pt~~~~~~g~~~~~~~~g-~~~~~~l~~~l~~~ 129 (239)
+||+++|++|...+..|.| .++.+.|+.||+..
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999998777888975 79999999999864
No 45
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.81 E-value=5e-19 Score=132.33 Aligned_cols=100 Identities=22% Similarity=0.444 Sum_probs=85.9
Q ss_pred hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--chhHHHHcCCCCCCeEEEEeCCC
Q 026412 30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLKFFPKGN 107 (239)
Q Consensus 30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g~ 107 (239)
..+|++.+.++++++|.||++||++|+.+.|.+.++++.+.. .+.|+.||++. +..++++|+|.++|++++|+++|
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 467888888899999999999999999999999999999863 46666666664 46889999999999999997555
Q ss_pred cCccccCCCCCHHHHHHHHHHhhC
Q 026412 108 KDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 108 ~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
+...++.|..+.+++.++|.+.+.
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHc
Confidence 777888999999999999998875
No 46
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.81 E-value=6.7e-20 Score=147.13 Aligned_cols=110 Identities=31% Similarity=0.697 Sum_probs=91.1
Q ss_pred CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTL 100 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 100 (239)
+..|.+|++ .|... .....++|.||||||+||++++|.|.++.-.++.- ..+.++++||+..+.++.+|+|+||||+
T Consensus 27 pt~VeDLdd-kFkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTI 104 (468)
T KOG4277|consen 27 PTAVEDLDD-KFKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTI 104 (468)
T ss_pred chhhhhhhH-Hhhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceE
Confidence 345555643 34332 34568999999999999999999999998777643 3589999999999999999999999999
Q ss_pred EEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCC
Q 026412 101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD 135 (239)
Q Consensus 101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 135 (239)
.+|++| ....|.|+|+.+++++|..+..++-..
T Consensus 105 k~~kgd--~a~dYRG~R~Kd~iieFAhR~a~aiI~ 137 (468)
T KOG4277|consen 105 KFFKGD--HAIDYRGGREKDAIIEFAHRCAAAIIE 137 (468)
T ss_pred EEecCC--eeeecCCCccHHHHHHHHHhcccceee
Confidence 999876 678999999999999999887765443
No 47
>PTZ00102 disulphide isomerase; Provisional
Probab=99.81 E-value=3.2e-19 Score=158.81 Aligned_cols=110 Identities=35% Similarity=0.731 Sum_probs=100.7
Q ss_pred CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412 23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 101 (239)
..+..++.++|++.+ +++++++|.||||||++|+.+.|.|+++++.++..+.+.++.+|++.+...+++|+++++||++
T Consensus 357 ~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTIL 436 (477)
T ss_pred CCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEE
Confidence 457889999999986 8889999999999999999999999999999876667999999999999999999999999999
Q ss_pred EEeCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412 102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 132 (239)
Q Consensus 102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~ 132 (239)
+|++|++.+..|.|.++.+.+.+||++++..
T Consensus 437 ~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 437 FVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 9999877777899999999999999998753
No 48
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.80 E-value=5.1e-19 Score=130.48 Aligned_cols=105 Identities=16% Similarity=0.262 Sum_probs=87.3
Q ss_pred cChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE-EEe
Q 026412 28 LTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK-FFP 104 (239)
Q Consensus 28 l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~-~~~ 104 (239)
-+..+|++.+ ..+++++|.|||+||+||+.+.|.++++++.+. +.+.|+.||+|+++++++.|+|++.|+++ +|+
T Consensus 9 ~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~--~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK--NFAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred CCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC--CceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 3477899988 568899999999999999999999999999985 34788999999999999999999776666 888
Q ss_pred CCCcCccccCC--------CCCHHHHHHHHHHhhCCCC
Q 026412 105 KGNKDGEEYGG--------GRDLEDFVSFINEKCGTSR 134 (239)
Q Consensus 105 ~g~~~~~~~~g--------~~~~~~l~~~l~~~~~~~~ 134 (239)
+|.....+..| ..+.++|.+-++....-++
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 87546777778 5678888888877654433
No 49
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.4e-19 Score=125.12 Aligned_cols=86 Identities=34% Similarity=0.752 Sum_probs=74.8
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCC
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 117 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~ 117 (239)
.++++++|.|||+|||||+.+.|.+.+++.+|+ ++.|++||+|+++++++.++|...||+.+|++| .....+.|.
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g-~~~~~~vGa- 93 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG-EEVDEVVGA- 93 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccCHhHHHhcCceEeeEEEEEECC-EEEEEEecC-
Confidence 456999999999999999999999999999996 599999999999999999999999999999887 566677776
Q ss_pred CHHHHHHHHHH
Q 026412 118 DLEDFVSFINE 128 (239)
Q Consensus 118 ~~~~l~~~l~~ 128 (239)
+.+++.+.+..
T Consensus 94 ~~~~l~~~i~~ 104 (106)
T KOG0907|consen 94 NKAELEKKIAK 104 (106)
T ss_pred CHHHHHHHHHh
Confidence 44466666653
No 50
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.80 E-value=7.2e-19 Score=126.40 Aligned_cols=88 Identities=23% Similarity=0.337 Sum_probs=77.1
Q ss_pred CcEEcCh-hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412 24 DVVVLTE-DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 24 ~v~~l~~-~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 102 (239)
.+..+++ ++|.+.+.++++++|.||+|||++|+.+.|.++++++.++ ++.+++||++++++++++|+|.++||+++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 4555665 8999999888999999999999999999999999999875 58999999999999999999999999999
Q ss_pred EeCCCcCccccCC
Q 026412 103 FPKGNKDGEEYGG 115 (239)
Q Consensus 103 ~~~g~~~~~~~~g 115 (239)
|++| +...++.|
T Consensus 82 fk~G-~~v~~~~g 93 (113)
T cd02989 82 FKNG-KTVDRIVG 93 (113)
T ss_pred EECC-EEEEEEEC
Confidence 9988 44444433
No 51
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.80 E-value=5.2e-19 Score=127.35 Aligned_cols=88 Identities=25% Similarity=0.418 Sum_probs=77.4
Q ss_pred CCcEEcChhhHHHHhcCC---CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412 23 DDVVVLTEDNFEKEVGQD---RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99 (239)
Q Consensus 23 ~~v~~l~~~~f~~~~~~~---k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 99 (239)
..+..+++++|.+.+.+. ++++|.||+|||++|+.+.|.++++++.++ ++.|++||++++ .++++|+|.++||
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 356788899999998433 899999999999999999999999999985 588999999988 9999999999999
Q ss_pred EEEEeCCCcCccccCC
Q 026412 100 LKFFPKGNKDGEEYGG 115 (239)
Q Consensus 100 ~~~~~~g~~~~~~~~g 115 (239)
+++|++| +...++.|
T Consensus 80 ~~~f~~G-~~v~~~~G 94 (113)
T cd02957 80 LLVYKNG-ELIDNIVG 94 (113)
T ss_pred EEEEECC-EEEEEEec
Confidence 9999988 55556655
No 52
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.78 E-value=2.4e-18 Score=120.31 Aligned_cols=94 Identities=24% Similarity=0.582 Sum_probs=80.2
Q ss_pred ChhhHHHHhcCC--CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412 29 TEDNFEKEVGQD--RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 106 (239)
Q Consensus 29 ~~~~f~~~~~~~--k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 106 (239)
+.++|++.+... ++++|.||++||++|+.+.|.++++++.+ .+++.++.+|++++++++++|++.++||+++|++|
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA--FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh--CCceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence 357888888544 99999999999999999999999999986 35799999999999999999999999999999876
Q ss_pred CcCccccCCCCCHHHHHHHH
Q 026412 107 NKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 107 ~~~~~~~~g~~~~~~l~~~l 126 (239)
+...++.|. +.+++.+.|
T Consensus 79 -~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 79 -TIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred -EEEEEEeCC-CHHHHHHhh
Confidence 555666664 677776655
No 53
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.76 E-value=6.3e-18 Score=118.36 Aligned_cols=91 Identities=32% Similarity=0.553 Sum_probs=81.7
Q ss_pred HHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccc
Q 026412 34 EKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 112 (239)
Q Consensus 34 ~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~ 112 (239)
+..+ +.+++++|.||++||++|+.+.|.++++++.+. +++.++.+|++++++++.+++|.++|++++|++| +...+
T Consensus 6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~~v~~ 82 (97)
T cd02949 6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFD--GAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-ELVKE 82 (97)
T ss_pred HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhC--CceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-eEEEE
Confidence 4444 788999999999999999999999999999885 3699999999999999999999999999999876 67788
Q ss_pred cCCCCCHHHHHHHHH
Q 026412 113 YGGGRDLEDFVSFIN 127 (239)
Q Consensus 113 ~~g~~~~~~l~~~l~ 127 (239)
+.|..+.+++.+|++
T Consensus 83 ~~g~~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGVKMKSEYREFIE 97 (97)
T ss_pred EeCCccHHHHHHhhC
Confidence 999999999998873
No 54
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.76 E-value=6.9e-18 Score=121.33 Aligned_cols=97 Identities=30% Similarity=0.381 Sum_probs=83.9
Q ss_pred hHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcC-c
Q 026412 32 NFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKD-G 110 (239)
Q Consensus 32 ~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~-~ 110 (239)
+|.+.+.+...++|.||++||++|+.+.|.++++++.+ +.+.+..+|++++++++++|+|.++||+++|++|+.. .
T Consensus 14 ~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~---~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~ 90 (113)
T cd02975 14 EFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS---DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG 90 (113)
T ss_pred HHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc---CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence 36666667778999999999999999999999999875 3688999999999999999999999999999887532 3
Q ss_pred cccCCCCCHHHHHHHHHHhhC
Q 026412 111 EEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 111 ~~~~g~~~~~~l~~~l~~~~~ 131 (239)
.++.|..+.+++.+||...+.
T Consensus 91 ~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 91 IRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEEEecCchHHHHHHHHHHHh
Confidence 478899999999999987654
No 55
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.76 E-value=5.9e-18 Score=119.43 Aligned_cols=82 Identities=16% Similarity=0.274 Sum_probs=71.6
Q ss_pred hhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412 30 EDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 107 (239)
Q Consensus 30 ~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 107 (239)
.+.|++.+ .++++++|.|+|+||++|+.+.|.+++++++++ +.+.|+.||+|+.+++++.|+|...||+++|.+|.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~--~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS--KMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc--CceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 35677777 368999999999999999999999999999985 12999999999999999999999999999999885
Q ss_pred cCcccc
Q 026412 108 KDGEEY 113 (239)
Q Consensus 108 ~~~~~~ 113 (239)
-....+
T Consensus 80 h~~~d~ 85 (114)
T cd02986 80 HMKVDY 85 (114)
T ss_pred EEEEec
Confidence 444454
No 56
>PTZ00051 thioredoxin; Provisional
Probab=99.75 E-value=8.3e-18 Score=117.86 Aligned_cols=91 Identities=33% Similarity=0.685 Sum_probs=78.8
Q ss_pred cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 107 (239)
Q Consensus 28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 107 (239)
.+.++|.+++..+++++|.||++||++|+.+.|.++++++.+. ++.++.+|++++..++++|++.++||+++|++|
T Consensus 6 ~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g- 81 (98)
T PTZ00051 6 TSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKVFKNG- 81 (98)
T ss_pred cCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEEEeCC-
Confidence 3467889988889999999999999999999999999999864 689999999999999999999999999999877
Q ss_pred cCccccCCCCCHHHHH
Q 026412 108 KDGEEYGGGRDLEDFV 123 (239)
Q Consensus 108 ~~~~~~~g~~~~~~l~ 123 (239)
+....+.|. ..+++.
T Consensus 82 ~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 82 SVVDTLLGA-NDEALK 96 (98)
T ss_pred eEEEEEeCC-CHHHhh
Confidence 566677775 555443
No 57
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.75 E-value=1.5e-17 Score=121.87 Aligned_cols=99 Identities=24% Similarity=0.383 Sum_probs=83.5
Q ss_pred hhHHHHhcCC-CcEEEEEECCCChHHhhHhHHHH---HHHHHccCCCCeEEEEEeCccc-------------hhHHHHcC
Q 026412 31 DNFEKEVGQD-RGALVEFYAPWCGHCKNLAPTYE---KVAAAFTLEDDVVVANLDADKY-------------KDLAEKYG 93 (239)
Q Consensus 31 ~~f~~~~~~~-k~vlV~F~a~wC~~C~~~~~~~~---~~a~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~ 93 (239)
+.+.+...++ ++++|.||++||++|+.+.|.+. .+.+.+. +++.++.+|++.. .+++.+|+
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR--AHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH--hheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 4566677777 99999999999999999999885 5555554 3688899998753 68999999
Q ss_pred CCCCCeEEEEeCC-CcCccccCCCCCHHHHHHHHHHhhC
Q 026412 94 VSGFPTLKFFPKG-NKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 94 i~~~Pt~~~~~~g-~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
|.++||+++|.++ |+...++.|..+.+.+.++|+...+
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 9999999999987 6788899999999999999988654
No 58
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.2e-17 Score=130.90 Aligned_cols=106 Identities=27% Similarity=0.580 Sum_probs=92.8
Q ss_pred EcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412 27 VLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP 104 (239)
Q Consensus 27 ~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 104 (239)
.-++.+|+..+ ...+.++|.|||.||+||+++.|.|+.++.+|+ ..+|.+||+|+.+.++..+||...||+++|+
T Consensus 6 v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp---~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 6 VNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP---GAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred ecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc---ccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 34567899888 567899999999999999999999999999996 7899999999999999999999999999999
Q ss_pred CCCcCccccCCCCCHHHHHHHHHHhhCCCCCCC
Q 026412 105 KGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGK 137 (239)
Q Consensus 105 ~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 137 (239)
+| .....+.|. ++..+.+-+.+++.++....
T Consensus 83 ng-~kid~~qGA-d~~gLe~kv~~~~stsaa~~ 113 (288)
T KOG0908|consen 83 NG-VKIDQIQGA-DASGLEEKVAKYASTSAASS 113 (288)
T ss_pred cC-eEeeeecCC-CHHHHHHHHHHHhccCcccc
Confidence 98 556777775 88889999988887665444
No 59
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.73 E-value=3.9e-17 Score=126.07 Aligned_cols=102 Identities=21% Similarity=0.345 Sum_probs=83.5
Q ss_pred CCCcEEcCh-hhHHHHhcC-C--CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCC
Q 026412 22 ADDVVVLTE-DNFEKEVGQ-D--RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 97 (239)
Q Consensus 22 ~~~v~~l~~-~~f~~~~~~-~--k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 97 (239)
-..+.+++. ++|.+.+.. + .+++|+||++||++|+.+.|.+.+++..++ .+.|++||++.+ .++.+|+|.++
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-~l~~~f~v~~v 136 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-GASDEFDTDAL 136 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-hhHHhCCCCCC
Confidence 356788888 999999843 3 499999999999999999999999999985 699999999987 89999999999
Q ss_pred CeEEEEeCCCcCccccCC-------CCCHHHHHHHHHH
Q 026412 98 PTLKFFPKGNKDGEEYGG-------GRDLEDFVSFINE 128 (239)
Q Consensus 98 Pt~~~~~~g~~~~~~~~g-------~~~~~~l~~~l~~ 128 (239)
||+++|++| +....+.| ..+.+.+..||.+
T Consensus 137 PTlllyk~G-~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 137 PALLVYKGG-ELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CEEEEEECC-EEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 999999988 44444433 3456666666653
No 60
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.72 E-value=4.8e-17 Score=111.78 Aligned_cols=92 Identities=36% Similarity=0.753 Sum_probs=82.4
Q ss_pred hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCc
Q 026412 31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG 110 (239)
Q Consensus 31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 110 (239)
++|++.+..+++++|.||++||++|+.+.|.+.++++. .+++.++.+|++.+.+++++|++.++|+++++.+| ...
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g-~~~ 76 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE---YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG-KEV 76 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH---CCCceEEEEECCCChhHHHhcCcccccEEEEEECC-EEE
Confidence 36788887779999999999999999999999999988 35799999999999999999999999999999887 567
Q ss_pred cccCCCCCHHHHHHHH
Q 026412 111 EEYGGGRDLEDFVSFI 126 (239)
Q Consensus 111 ~~~~g~~~~~~l~~~l 126 (239)
..+.|..+.+.+.+||
T Consensus 77 ~~~~g~~~~~~l~~~i 92 (93)
T cd02947 77 DRVVGADPKEELEEFL 92 (93)
T ss_pred EEEecCCCHHHHHHHh
Confidence 7888988889998887
No 61
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.71 E-value=1.2e-16 Score=116.29 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=80.0
Q ss_pred CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----------hhHHHHc
Q 026412 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------KDLAEKY 92 (239)
Q Consensus 24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----------~~l~~~~ 92 (239)
....++.++|.+.+.+++.++|+||++|||+|+.+.|.+.++++.. ++.+..||++.+ .++.++|
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 4567888999999988999999999999999999999999999883 355777777633 2555676
Q ss_pred CC----CCCCeEEEEeCCCcCccccCC-CCCHHHHHHHHH
Q 026412 93 GV----SGFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFIN 127 (239)
Q Consensus 93 ~i----~~~Pt~~~~~~g~~~~~~~~g-~~~~~~l~~~l~ 127 (239)
++ .++||+++|++| +...+..| ..+.+++.+|+.
T Consensus 83 ~i~~~i~~~PT~v~~k~G-k~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDG-KQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCC-eEEEEEeCCCCCHHHHHHHhh
Confidence 64 459999999998 55666777 567999998863
No 62
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.70 E-value=1.1e-16 Score=141.74 Aligned_cols=107 Identities=49% Similarity=0.918 Sum_probs=94.4
Q ss_pred CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC-CCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412 23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDADKYKDLAEKYGVSGFPTL 100 (239)
Q Consensus 23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 100 (239)
..+..++..+|.+.+ +++++++|.||+|||++|+.+.|.++++++.+.. +..+.++.+|++.+. +.. +++.++||+
T Consensus 346 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~ 423 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTI 423 (462)
T ss_pred CccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEE
Confidence 467789999999998 7789999999999999999999999999999985 337999999999764 334 999999999
Q ss_pred EEEeCCCc-CccccCCCCCHHHHHHHHHHhhC
Q 026412 101 KFFPKGNK-DGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 101 ~~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
++|++|+. .+..|.|.++.+.+.+||.+...
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 424 KFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred EEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 99998865 46789999999999999998764
No 63
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.66 E-value=9.9e-16 Score=119.78 Aligned_cols=99 Identities=18% Similarity=0.336 Sum_probs=80.7
Q ss_pred CCCcEEcChhhHHHHh-cC--CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412 22 ADDVVVLTEDNFEKEV-GQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 98 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~-~~--~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 98 (239)
-..+.+++..+|...+ .. +.+|||+||++||++|+.+.|.|+++|..++ .+.|++||++.. ..+|++.++|
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~---~~~~~i~~lP 154 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC---IPNYPDKNLP 154 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---HhhCCCCCCC
Confidence 4678889999999876 33 3589999999999999999999999999985 689999999853 5899999999
Q ss_pred eEEEEeCCCcCccccCC-------CCCHHHHHHHHH
Q 026412 99 TLKFFPKGNKDGEEYGG-------GRDLEDFVSFIN 127 (239)
Q Consensus 99 t~~~~~~g~~~~~~~~g-------~~~~~~l~~~l~ 127 (239)
|+++|++| +...++.| ..+.+.+..+|.
T Consensus 155 Tlliyk~G-~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 155 TILVYRNG-DIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred EEEEEECC-EEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 99999988 44445544 345666666654
No 64
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1e-15 Score=132.67 Aligned_cols=107 Identities=49% Similarity=0.821 Sum_probs=93.3
Q ss_pred cEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412 25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103 (239)
Q Consensus 25 v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 103 (239)
...+...+|.... ..+.+++|.||+|||+||+++.|.|.+++..+.. .+.++.|||+.+.++|++|+|+++||+.+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f 108 (383)
T KOG0191|consen 31 VSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVF 108 (383)
T ss_pred hhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEE
Confidence 3334445554444 8889999999999999999999999999999863 799999999999999999999999999999
Q ss_pred eCCCcCccccCCCCCHHHHHHHHHHhhCCCC
Q 026412 104 PKGNKDGEEYGGGRDLEDFVSFINEKCGTSR 134 (239)
Q Consensus 104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 134 (239)
.+| ..+..|.|.++.+.+.+|+...+....
T Consensus 109 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 109 RPG-KKPIDYSGPRNAESLAEFLIKELEPSV 138 (383)
T ss_pred cCC-CceeeccCcccHHHHHHHHHHhhcccc
Confidence 998 778999999999999999998876543
No 65
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.9e-16 Score=134.76 Aligned_cols=108 Identities=34% Similarity=0.698 Sum_probs=88.6
Q ss_pred CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC-CCCeEEEEEeCc--cchhHHHHcCCCCC
Q 026412 22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDAD--KYKDLAEKYGVSGF 97 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~--~~~~l~~~~~i~~~ 97 (239)
...+..|+.++|+..+ .+.+..+|.||++|||||+++.|.|+++++.... .+-+.++.|||. .|..+|++|+|++|
T Consensus 38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 4679999999999999 5556999999999999999999999999987653 346788999996 68899999999999
Q ss_pred CeEEEEeCCCc---CccccCCCCCHHHHHHHHHHh
Q 026412 98 PTLKFFPKGNK---DGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 98 Pt~~~~~~g~~---~~~~~~g~~~~~~l~~~l~~~ 129 (239)
|++.+|+.+.. ....+.|+..+.++.+.+.+.
T Consensus 118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~ 152 (606)
T KOG1731|consen 118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRT 152 (606)
T ss_pred ceeeecCCccccCcCCCcccCCcchhhHHHHHHHH
Confidence 99999987632 245566766677777666543
No 66
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.2e-15 Score=128.84 Aligned_cols=110 Identities=46% Similarity=0.826 Sum_probs=99.9
Q ss_pred CcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412 24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 24 ~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 102 (239)
.+..++..+|...+ +.+..++|.||+|||+||+.+.|.|++++..+.....+.++.+||+.+..++.+++|+++||+.+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 38899999999988 77889999999999999999999999999988765789999999999999999999999999999
Q ss_pred EeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412 103 FPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133 (239)
Q Consensus 103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~ 133 (239)
|++|......|.|.|+.+.+..|+.+..+..
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 9988553677789999999999999988764
No 67
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.63 E-value=5.8e-15 Score=104.25 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=78.4
Q ss_pred HHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC--CCCeEEEEeCCC-cC
Q 026412 33 FEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GFPTLKFFPKGN-KD 109 (239)
Q Consensus 33 f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~g~-~~ 109 (239)
|..-...++++++.|+++||++|+.+.|.++++|+++. +.+.|+.||+++++.+++.|++. ++|++++++.++ ..
T Consensus 5 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~--~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k 82 (103)
T cd02982 5 FFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFK--GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKK 82 (103)
T ss_pred HhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhC--CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccc
Confidence 33333336899999999999999999999999999996 56999999999999999999999 999999998832 23
Q ss_pred ccccCCCCCHHHHHHHHHHh
Q 026412 110 GEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 110 ~~~~~g~~~~~~l~~~l~~~ 129 (239)
.....|..+.+++.+|+.+.
T Consensus 83 ~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 83 YLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred cCCCccccCHHHHHHHHHhh
Confidence 23333445999999999764
No 68
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.61 E-value=1.3e-14 Score=109.41 Aligned_cols=90 Identities=20% Similarity=0.297 Sum_probs=67.6
Q ss_pred HhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc------------hhHH-HHc---CCCCCCe
Q 026412 36 EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY------------KDLA-EKY---GVSGFPT 99 (239)
Q Consensus 36 ~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~------------~~l~-~~~---~i~~~Pt 99 (239)
.+..+++.+|+|||+||++|++..|.++++++++. +.+..|+.+.. .... ..| ++.++||
T Consensus 46 ~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPT 121 (153)
T TIGR02738 46 HANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPA 121 (153)
T ss_pred hhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCe
Confidence 34456778999999999999999999999999873 44545554421 2333 345 7899999
Q ss_pred EEEEeCCCcC-ccccCCCCCHHHHHHHHHHh
Q 026412 100 LKFFPKGNKD-GEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 100 ~~~~~~g~~~-~~~~~g~~~~~~l~~~l~~~ 129 (239)
.+++++.|.. ...+.|..+.+++.+.+.+.
T Consensus 122 t~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 122 TFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 9999876553 44678999999998888754
No 69
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.61 E-value=5.6e-15 Score=99.91 Aligned_cols=80 Identities=25% Similarity=0.429 Sum_probs=69.9
Q ss_pred EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHH
Q 026412 43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF 122 (239)
Q Consensus 43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l 122 (239)
.+..||++||++|+.+.|.++++++.+. ..+.+..||++++++++++|++.++|++++ +| + .++.|..+.+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g-~--~~~~G~~~~~~l 74 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG--DAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-D--VEFIGAPTKEEL 74 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc--CceEEEEEeCccCHHHHHHcCCccCCEEEE--CC-E--EEEecCCCHHHH
Confidence 4678999999999999999999999875 358899999999999999999999999875 44 3 377899999999
Q ss_pred HHHHHHh
Q 026412 123 VSFINEK 129 (239)
Q Consensus 123 ~~~l~~~ 129 (239)
.+++.+.
T Consensus 75 ~~~l~~~ 81 (82)
T TIGR00411 75 VEAIKKR 81 (82)
T ss_pred HHHHHhh
Confidence 9998764
No 70
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.60 E-value=3.3e-15 Score=107.98 Aligned_cols=100 Identities=21% Similarity=0.430 Sum_probs=71.3
Q ss_pred hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC--CCeEEEEeCCC
Q 026412 30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--FPTLKFFPKGN 107 (239)
Q Consensus 30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt~~~~~~g~ 107 (239)
.+.+.....++++++|.|||+||++|+.+.|.+.+.........++..+.+|.+.. .....|++.+ +||+++|.++|
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~G 87 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-chhhhcccCCCccceEEEECCCC
Confidence 34455555789999999999999999999999999877654333455544444322 4567899986 99999997555
Q ss_pred cCcc---ccCCCCCHHHHHHHHHHhh
Q 026412 108 KDGE---EYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 108 ~~~~---~~~g~~~~~~l~~~l~~~~ 130 (239)
+... ...|.++.+.+.+.+....
T Consensus 88 k~~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 88 DVHPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred CCchhhccCCCCccccccCCCHHHHH
Confidence 5543 5566777777776666544
No 71
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.60 E-value=5.7e-15 Score=106.21 Aligned_cols=77 Identities=21% Similarity=0.409 Sum_probs=66.6
Q ss_pred ChhhHHHHhcC--CCcEEEEEEC-------CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------chhHHHHc
Q 026412 29 TEDNFEKEVGQ--DRGALVEFYA-------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------YKDLAEKY 92 (239)
Q Consensus 29 ~~~~f~~~~~~--~k~vlV~F~a-------~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------~~~l~~~~ 92 (239)
+.++|.+.+.. +++++|.||| +||++|+.+.|.+++++..++ +++.++.||+++ +.+++.+|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~--~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP--EDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC--CCCEEEEEEcCCcccccCcchhhHhcc
Confidence 46778888843 6899999999 999999999999999999986 358899999975 45899999
Q ss_pred CCC-CCCeEEEEeCCC
Q 026412 93 GVS-GFPTLKFFPKGN 107 (239)
Q Consensus 93 ~i~-~~Pt~~~~~~g~ 107 (239)
+|. ++||+++|+.|+
T Consensus 86 ~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 86 KLTTGVPTLLRWKTPQ 101 (119)
T ss_pred CcccCCCEEEEEcCCc
Confidence 998 999999997663
No 72
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.59 E-value=1.8e-14 Score=127.30 Aligned_cols=89 Identities=20% Similarity=0.334 Sum_probs=75.3
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEE----------------------------eCccchhHH
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL----------------------------DADKYKDLA 89 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~v----------------------------d~~~~~~l~ 89 (239)
.++++++|+|||+||++|+.+.|.+.++++.+..+ ++.++.| ++|.+..++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 57899999999999999999999999999988632 3555443 344566899
Q ss_pred HHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHH
Q 026412 90 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 127 (239)
Q Consensus 90 ~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 127 (239)
+.|+|.++|+++++.++|+....+.|..+.+++.++|+
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 99999999999888766688888999999999999998
No 73
>PTZ00062 glutaredoxin; Provisional
Probab=99.58 E-value=1.7e-14 Score=113.24 Aligned_cols=91 Identities=10% Similarity=0.144 Sum_probs=79.6
Q ss_pred ChhhHHHHhcCC-CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412 29 TEDNFEKEVGQD-RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 107 (239)
Q Consensus 29 ~~~~f~~~~~~~-k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 107 (239)
+.+.|.+.+.++ ..++++|||+||++|+.+.|.+.++++.++ ++.|+.||.+ |+|.++|++++|++|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d--------~~V~~vPtfv~~~~g- 72 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA--------DANNEYGVFEFYQNS- 72 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc--------cCcccceEEEEEECC-
Confidence 467788888544 789999999999999999999999999985 7999999987 999999999999987
Q ss_pred cCccccCCCCCHHHHHHHHHHhhCC
Q 026412 108 KDGEEYGGGRDLEDFVSFINEKCGT 132 (239)
Q Consensus 108 ~~~~~~~g~~~~~~l~~~l~~~~~~ 132 (239)
+...++.|. ++..+..++.+..++
T Consensus 73 ~~i~r~~G~-~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 73 QLINSLEGC-NTSTLVSFIRGWAQK 96 (204)
T ss_pred EEEeeeeCC-CHHHHHHHHHHHcCC
Confidence 667788876 699999999888764
No 74
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.58 E-value=5e-14 Score=108.77 Aligned_cols=103 Identities=18% Similarity=0.404 Sum_probs=82.9
Q ss_pred EEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------
Q 026412 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------------------- 84 (239)
Q Consensus 26 ~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------------------- 84 (239)
..++++.+.-..-.+++++|+||++||++|+...|.+.++.++++.. ++.++.|+++.
T Consensus 47 ~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d 125 (173)
T PRK03147 47 TDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPVAID 125 (173)
T ss_pred ecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceEEEC
Confidence 34555555433345789999999999999999999999999998743 47777777652
Q ss_pred -chhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412 85 -YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 85 -~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 129 (239)
+..+++.|++.++|++++++++|+....+.|..+.+++.+++++.
T Consensus 126 ~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 126 KGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 357889999999999999987777777889999999999998753
No 75
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.58 E-value=4.7e-14 Score=110.26 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=71.7
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----------------------hhHHHHcCC
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------KDLAEKYGV 94 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i 94 (239)
..+++++|+||++||++|++..|.+.++.+. ++.++.|+.++. ..++..|++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 4688999999999999999999999988653 466777765432 135567899
Q ss_pred CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412 95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 130 (239)
.++|+.++++++|+....+.|..+.+.+.+++...+
T Consensus 141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 999998888877788888999999999988887765
No 76
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.58 E-value=1.1e-14 Score=116.39 Aligned_cols=101 Identities=25% Similarity=0.388 Sum_probs=80.6
Q ss_pred hhhHHHHhcCCCcEEEEEEC---CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412 30 EDNFEKEVGQDRGALVEFYA---PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 106 (239)
Q Consensus 30 ~~~f~~~~~~~k~vlV~F~a---~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 106 (239)
...|.+.+.++. .++.|++ +||++|+.+.|.++++++.+. .-.+.++.+|.+++++++++|+|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~-~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g 87 (215)
T TIGR02187 10 KELFLKELKNPV-EIVVFTDNDKEGCQYCKETEQLLEELSEVSP-KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG 87 (215)
T ss_pred HHHHHHhcCCCe-EEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC
Confidence 344444454444 4556777 999999999999999999984 22366777787799999999999999999999988
Q ss_pred CcCccccCCCCCHHHHHHHHHHhhCC
Q 026412 107 NKDGEEYGGGRDLEDFVSFINEKCGT 132 (239)
Q Consensus 107 ~~~~~~~~g~~~~~~l~~~l~~~~~~ 132 (239)
.....++.|..+.+++.+||...++.
T Consensus 88 ~~~~~~~~G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 88 KDGGIRYTGIPAGYEFAALIEDIVRV 113 (215)
T ss_pred eeeEEEEeecCCHHHHHHHHHHHHHh
Confidence 44345899999999999999988654
No 77
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.54 E-value=5.7e-14 Score=126.99 Aligned_cols=98 Identities=24% Similarity=0.514 Sum_probs=80.9
Q ss_pred ChhhHHHHh----cCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCcc----chhHHHHcCCCCC
Q 026412 29 TEDNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGF 97 (239)
Q Consensus 29 ~~~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~ 97 (239)
+.+++++.+ .++|+++|+|||+||++|+.+++.. .++.+.++ ++.++++|+++ +.+++++|++.++
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 456677766 3478999999999999999999875 66777764 58899999974 3688999999999
Q ss_pred CeEEEEeCCCcC--ccccCCCCCHHHHHHHHHHh
Q 026412 98 PTLKFFPKGNKD--GEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 98 Pt~~~~~~g~~~--~~~~~g~~~~~~l~~~l~~~ 129 (239)
||+++|+++|+. ..++.|..+.+++.+++++.
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999999865555 46788999999999999874
No 78
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.53 E-value=2.4e-14 Score=102.64 Aligned_cols=87 Identities=31% Similarity=0.528 Sum_probs=65.0
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHH---HccCCCCeEEEEEeCccc--------------------hhHHHHcCC
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAA---AFTLEDDVVVANLDADKY--------------------KDLAEKYGV 94 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~---~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~i 94 (239)
.+++++++.||+|||++|+.+.+.+.+..+ .+. .++.++.++++.. .+++++|+|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK--DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH--CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh--cCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 467899999999999999999999886443 332 3577888877632 358999999
Q ss_pred CCCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412 95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
+++||++++++.|+....+.|..++++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999999986667777889999999998875
No 79
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.53 E-value=7.9e-14 Score=111.54 Aligned_cols=96 Identities=28% Similarity=0.377 Sum_probs=79.2
Q ss_pred EEcChhhHHHHhcCCCcE-EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412 26 VVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP 104 (239)
Q Consensus 26 ~~l~~~~f~~~~~~~k~v-lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 104 (239)
..++..+.+.+-...+++ ++.||++||++|+.+.|.+++++... +++.+..+|.+.+++++.+|+|.++||++++.
T Consensus 118 ~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~---~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 118 PGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN---DKILGEMIEANENPDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred CCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc---CceEEEEEeCCCCHHHHHHhCCccCCEEEEec
Confidence 456666666665445554 44599999999999999999998874 37888999999999999999999999999986
Q ss_pred CCCcCccccCCCCCHHHHHHHHHH
Q 026412 105 KGNKDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 105 ~g~~~~~~~~g~~~~~~l~~~l~~ 128 (239)
+| . .+.|..+.+++.+|+.+
T Consensus 195 ~~-~---~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 195 GV-E---EFVGAYPEEQFLEYILS 214 (215)
T ss_pred CC-E---EEECCCCHHHHHHHHHh
Confidence 55 2 28899999999999975
No 80
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.51 E-value=1.2e-13 Score=100.47 Aligned_cols=81 Identities=23% Similarity=0.353 Sum_probs=65.0
Q ss_pred ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccchhHHHH--------cCCCCC
Q 026412 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEK--------YGVSGF 97 (239)
Q Consensus 29 ~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~~~l~~~--------~~i~~~ 97 (239)
+++.+.+...++|+++|.|+++||++|+.|.+.. .++++.+. .+++++.+|.+++++++++ |++.++
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~--~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN--ENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh--CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 5677888889999999999999999999998742 34555542 3799999999988777653 589999
Q ss_pred CeEEEEeCCCcCcc
Q 026412 98 PTLKFFPKGNKDGE 111 (239)
Q Consensus 98 Pt~~~~~~g~~~~~ 111 (239)
|+++++..+|+...
T Consensus 82 Pt~vfl~~~G~~~~ 95 (124)
T cd02955 82 PLNVFLTPDLKPFF 95 (124)
T ss_pred CEEEEECCCCCEEe
Confidence 99999988766543
No 81
>PHA02125 thioredoxin-like protein
Probab=99.48 E-value=2.1e-13 Score=90.63 Aligned_cols=70 Identities=24% Similarity=0.490 Sum_probs=55.1
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCC-CCHHHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDF 122 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~-~~~~~l 122 (239)
++.||++||++|+.+.|.++++. +.++.||++.+.+++++|+|.++||++ .| +...++.|. ++..++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g-~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NT-STLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CC-EEEEEEeCCCCcHHHH
Confidence 78999999999999999987652 457899999999999999999999987 33 344566674 455555
Q ss_pred HHH
Q 026412 123 VSF 125 (239)
Q Consensus 123 ~~~ 125 (239)
.+-
T Consensus 70 ~~~ 72 (75)
T PHA02125 70 KEK 72 (75)
T ss_pred HHH
Confidence 543
No 82
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.46 E-value=6.3e-13 Score=109.49 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=72.5
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------chhHHHHcCCCCCCeEEEEeC-C
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------YKDLAEKYGVSGFPTLKFFPK-G 106 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------~~~l~~~~~i~~~Pt~~~~~~-g 106 (239)
.+++++|+||++||++|+.+.|.+.++++.+. +.+..|++|. +..++++|||.++|+++++++ |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDP 240 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCC
Confidence 47899999999999999999999999999984 5555555543 356899999999999999987 4
Q ss_pred CcCccccCCCCCHHHHHHHHHHhhC
Q 026412 107 NKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 107 ~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
+.......|..+.+++.+.+...+.
T Consensus 241 ~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 241 NQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 4444445688999999999887654
No 83
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.45 E-value=4e-13 Score=98.51 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=68.0
Q ss_pred hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe-----------------------Cccchh
Q 026412 31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-----------------------ADKYKD 87 (239)
Q Consensus 31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd-----------------------~~~~~~ 87 (239)
..+......+++++|.||++||++|+.+.|.++++.+.+ ++.++.|+ +|.+..
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 91 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR 91 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch
Confidence 334333345789999999999999999999999998775 25555554 344567
Q ss_pred HHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHH
Q 026412 88 LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF 122 (239)
Q Consensus 88 l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l 122 (239)
+++.|++.++|+.+++.++|+....+.|..+.+.+
T Consensus 92 ~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 92 VGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 88899999999888887666778888898776654
No 84
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.44 E-value=1.1e-13 Score=113.81 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=114.5
Q ss_pred CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhh-----HhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC
Q 026412 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKN-----LAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG 96 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~-----~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 96 (239)
..++..|+.+||.+++.+.+..+|+|+.|--..--. +...+-+++.+.-.+.++.|+.||..+...+++++|+..
T Consensus 33 kDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E 112 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE 112 (383)
T ss_dssp S--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S
T ss_pred ccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc
Confidence 357999999999999998999999999887432222 223344455444345689999999999999999999999
Q ss_pred CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhh-hhhHHHHHHHhccchhHHHHHHHHHhh
Q 026412 97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVA-SLDALVKEFVAASGDEKKAVFSKIERG 175 (239)
Q Consensus 97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~ 175 (239)
.+++++|++| ....|.|.++++.++.||-.........+++.....++.. .-+..+++|+++.+++....++++++.
T Consensus 113 ~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~ 190 (383)
T PF01216_consen 113 EGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEH 190 (383)
T ss_dssp TTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHH
T ss_pred cCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHh
Confidence 9999999988 5688999999999999999999877766665544443333 113455688888777788888888887
Q ss_pred hhhhhhhhhhhhHHHHHHHhhh
Q 026412 176 VEVLEGSTARHGKIYLKVAKNY 197 (239)
Q Consensus 176 ~~~~~~~~~~~~~~y~~~~~k~ 197 (239)
+..+- ..+|.+-.++.+++
T Consensus 191 F~p~I---kFfAtfd~~vAk~L 209 (383)
T PF01216_consen 191 FQPYI---KFFATFDKKVAKKL 209 (383)
T ss_dssp CTTTS---EEEEE-SHHHHHHH
T ss_pred hcCce---eEEEEecchhhhhc
Confidence 65442 23444445555554
No 85
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.44 E-value=6.6e-13 Score=97.90 Aligned_cols=72 Identities=17% Similarity=0.381 Sum_probs=58.0
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccc------------------------hhHHHHc
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY------------------------KDLAEKY 92 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~ 92 (239)
-++++++|+||++||++|+.+.|.+.++.+.+... +++.++.|+++.. ..+++.|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 35789999999999999999999999998888643 3566666665522 3578899
Q ss_pred CCCCCCeEEEEeCCCcC
Q 026412 93 GVSGFPTLKFFPKGNKD 109 (239)
Q Consensus 93 ~i~~~Pt~~~~~~g~~~ 109 (239)
++.++|++++++++|+.
T Consensus 96 ~v~~~P~~~lid~~G~i 112 (131)
T cd03009 96 KIEGIPTLIILDADGEV 112 (131)
T ss_pred CCCCCCEEEEECCCCCE
Confidence 99999999999866554
No 86
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.44 E-value=5.6e-13 Score=99.43 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=57.4
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC------CCeEEEEEeCccc-------------------------hh
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE------DDVVVANLDADKY-------------------------KD 87 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~------~~v~~~~vd~~~~-------------------------~~ 87 (239)
++++++|+|||+||++|+++.|.+.++.+.+..+ .++.++.|+.+.+ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5799999999999999999999999988766532 2588888876532 25
Q ss_pred HHHHcCCCCCCeEEEEeCCCcC
Q 026412 88 LAEKYGVSGFPTLKFFPKGNKD 109 (239)
Q Consensus 88 l~~~~~i~~~Pt~~~~~~g~~~ 109 (239)
++.+|++.++|+.+++++.|+.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~V 125 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDV 125 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcE
Confidence 7788999999999999876554
No 87
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.43 E-value=1.2e-12 Score=91.04 Aligned_cols=69 Identities=30% Similarity=0.643 Sum_probs=57.3
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-------------------------hhHHHHcCC
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------------------------KDLAEKYGV 94 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~~i 94 (239)
+|+++|.||++||++|++..|.+.++.+.++.++++.++.|..|.. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999998666788888877642 268889999
Q ss_pred CCCCeEEEEeCCCc
Q 026412 95 SGFPTLKFFPKGNK 108 (239)
Q Consensus 95 ~~~Pt~~~~~~g~~ 108 (239)
.++|++++++++|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 99999999987754
No 88
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.43 E-value=9.1e-13 Score=101.91 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=71.6
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-----------------------ccchhHHHHcCC
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----------------------DKYKDLAEKYGV 94 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i 94 (239)
.++++++|+||++||++|+++.|.++++.+. ++.++.|+. |.+..+.+.|++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 4678999999999999999999999988753 354555543 333467788999
Q ss_pred CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412 95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
.++|+.++++++|+....+.|..+.+++.+++++.++
T Consensus 136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 9999888887666777888999999999999988753
No 89
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.41 E-value=1.2e-12 Score=96.80 Aligned_cols=71 Identities=20% Similarity=0.432 Sum_probs=57.5
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccc-------------------------hhHHHHc
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY-------------------------KDLAEKY 92 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~~ 92 (239)
++++++|.||++||++|+...|.+.++++.++.+ .++.++.|+++.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 5799999999999999999999999999888654 3577777766532 2456779
Q ss_pred CCCCCCeEEEEeCCCcC
Q 026412 93 GVSGFPTLKFFPKGNKD 109 (239)
Q Consensus 93 ~i~~~Pt~~~~~~g~~~ 109 (239)
++.++|++++++++|+.
T Consensus 96 ~v~~iPt~~lid~~G~i 112 (132)
T cd02964 96 KVEGIPTLVVLKPDGDV 112 (132)
T ss_pred CCCCCCEEEEECCCCCE
Confidence 99999999999866553
No 90
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.39 E-value=1.8e-12 Score=86.33 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=57.2
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCC-CCHHHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDF 122 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~-~~~~~l 122 (239)
-|.||++||++|+.+.|.++++++++. ..+.+..|| +.+.+.+|++.++|++++ +| +.. +.|. .+.+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~--~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G-~~~--~~G~~~~~~~l 71 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELG--IDAEFEKVT---DMNEILEAGVTATPGVAV--DG-ELV--IMGKIPSKEEI 71 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcC--CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CC-EEE--EEeccCCHHHH
Confidence 378999999999999999999999985 357777776 234478899999999988 55 333 6674 466777
Q ss_pred HHHH
Q 026412 123 VSFI 126 (239)
Q Consensus 123 ~~~l 126 (239)
.+++
T Consensus 72 ~~~l 75 (76)
T TIGR00412 72 KEIL 75 (76)
T ss_pred HHHh
Confidence 7765
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.39 E-value=2.3e-12 Score=93.79 Aligned_cols=93 Identities=26% Similarity=0.383 Sum_probs=71.3
Q ss_pred EcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe---------------------Cccc
Q 026412 27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD---------------------ADKY 85 (239)
Q Consensus 27 ~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd---------------------~~~~ 85 (239)
.++++.+......+++++|.||++||++|+.+.|.+.++++.+. +..+.+| .+.+
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 34455555555556899999999999999999999999987742 3222222 1344
Q ss_pred hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHH
Q 026412 86 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 124 (239)
Q Consensus 86 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~ 124 (239)
.+++++|+|.++|+++++++++ ....+.|..+.+.+.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 6799999999999999999886 6677889888888764
No 92
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=99.37 E-value=1.9e-11 Score=86.34 Aligned_cols=108 Identities=24% Similarity=0.442 Sum_probs=87.2
Q ss_pred CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHH-HHccCCCCeEEEEEeCc-----cchhHHHHcCCC
Q 026412 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVA-AAFTLEDDVVVANLDAD-----KYKDLAEKYGVS 95 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a-~~~~~~~~v~~~~vd~~-----~~~~l~~~~~i~ 95 (239)
..+.+.|+.-+|++++.+.+.++|.|-... |--+-+.+|.++| +.....+++.++.|.+. +|.+|+++|++.
T Consensus 3 ~~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 3 CKGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp STTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred cCceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 356789999999999999999999997544 3346688999999 66666789999999875 578999999995
Q ss_pred --CCCeEEEEeCCCcCcccc--CCCCCHHHHHHHHHHhhC
Q 026412 96 --GFPTLKFFPKGNKDGEEY--GGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 96 --~~Pt~~~~~~g~~~~~~~--~g~~~~~~l~~~l~~~~~ 131 (239)
.+|.+++|.+|.+.+.+| .|+.+.+++..|+.++++
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred cccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 699999999777888988 889999999999998764
No 93
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.37 E-value=2.2e-12 Score=83.72 Aligned_cols=57 Identities=26% Similarity=0.550 Sum_probs=51.2
Q ss_pred EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412 43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 102 (239)
-++.||++||++|+.+.+.+++++... +++.+..+|++++++++++|++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~---~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN---PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC---CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 367899999999999999999998764 369999999999999999999999999855
No 94
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.37 E-value=3e-12 Score=91.18 Aligned_cols=86 Identities=27% Similarity=0.509 Sum_probs=69.4
Q ss_pred ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----------------------
Q 026412 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----------------------- 85 (239)
Q Consensus 29 ~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----------------------- 85 (239)
+...+...-..+++++|.||++||++|+...+.+.++.+.+. ++++.++.|+++.+
T Consensus 8 ~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (116)
T cd02966 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPD 86 (116)
T ss_pred CCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCc
Confidence 333333333347899999999999999999999999999986 45799999999875
Q ss_pred hhHHHHcCCCCCCeEEEEeCCCcCccccCC
Q 026412 86 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGG 115 (239)
Q Consensus 86 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g 115 (239)
..+.+.|++.++|++++++++|+....+.|
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred chHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 678999999999999999877666666554
No 95
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.37 E-value=1.2e-11 Score=94.98 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=68.1
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------chhHHHHcCC--CCCCeEEEEeCCCc
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------YKDLAEKYGV--SGFPTLKFFPKGNK 108 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------~~~l~~~~~i--~~~Pt~~~~~~g~~ 108 (239)
+|+||++||++|++..|.+.+++++++ +.+..|+.|. ...+.+.|++ .++|+.++++.+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 888999999999999999999999973 5555555442 2336678995 69999999987766
Q ss_pred Cc-cccCCCCCHHHHHHHHHHhhCC
Q 026412 109 DG-EEYGGGRDLEDFVSFINEKCGT 132 (239)
Q Consensus 109 ~~-~~~~g~~~~~~l~~~l~~~~~~ 132 (239)
.. ..+.|..+.+++.+.+...+..
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhh
Confidence 54 4689999999999988887654
No 96
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.32 E-value=2.5e-11 Score=87.35 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=75.7
Q ss_pred hcCCCcEEEEEECCCChHHhhHhHH-H--HHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCCCCeEEEEeC-CCcCc
Q 026412 37 VGQDRGALVEFYAPWCGHCKNLAPT-Y--EKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPK-GNKDG 110 (239)
Q Consensus 37 ~~~~k~vlV~F~a~wC~~C~~~~~~-~--~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~-g~~~~ 110 (239)
..++|+++|+|+++||++|+.+... | .++.+.+. .++++..+|.+ +...++..|++.++|+++++.+ +++..
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~--~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR--ENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH--hCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 3678999999999999999999764 3 33444443 36888888887 5678999999999999999987 66788
Q ss_pred cccCCCCCHHHHHHHHHHhh
Q 026412 111 EEYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 111 ~~~~g~~~~~~l~~~l~~~~ 130 (239)
.++.|..++++|...|++..
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 89999999999999988754
No 97
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.32 E-value=2.6e-11 Score=93.70 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=65.8
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEE------EEEeCcc---------------------------
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV------ANLDADK--------------------------- 84 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~------~~vd~~~--------------------------- 84 (239)
-.+|+.+|+|||.||++|+..+|.+.+++.. ++.+ ..||.++
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll 131 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL 131 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence 4589999999999999999999999999654 2323 3444332
Q ss_pred --chhHHHHcCCCCCCeE-EEEeCCCcCccccCCCCCHHHHHHHH
Q 026412 85 --YKDLAEKYGVSGFPTL-KFFPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 85 --~~~l~~~~~i~~~Pt~-~~~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
+..+...|++.++|+. +++++.|+....+.|..+.+++.+.+
T Consensus 132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2356778999999888 78888888888999999888887643
No 98
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7.1e-11 Score=86.61 Aligned_cols=92 Identities=22% Similarity=0.345 Sum_probs=73.0
Q ss_pred HHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCcc----------------chhHHHHcCC
Q 026412 34 EKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----------------YKDLAEKYGV 94 (239)
Q Consensus 34 ~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~----------------~~~l~~~~~i 94 (239)
..+...++..++.|.++.|++|.++...+ .++.+.+. +++.++.+++.. ..+|++.|++
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk--~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK--EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh--hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 33447789999999999999999998765 33444443 357777777542 2489999999
Q ss_pred CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHH
Q 026412 95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 127 (239)
Q Consensus 95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 127 (239)
+++|++++|++.|+......|...++++..-++
T Consensus 114 rstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 114 RSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred ccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 999999999988888888899999999887665
No 99
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=1.8e-11 Score=117.79 Aligned_cols=92 Identities=17% Similarity=0.325 Sum_probs=77.2
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC---------------------------ccchhHHHH
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------------------------DKYKDLAEK 91 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~ 91 (239)
++++++|+|||+||++|+...|.++++.++++. .++.++.|.+ |.+..+.++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~-~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD-QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC-CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 579999999999999999999999999999974 3577777632 223467789
Q ss_pred cCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412 92 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 92 ~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
|+|.++|++++++++|+...++.|....+.+.+++...+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 9999999999997666777889999999999999988754
No 100
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.28 E-value=7.1e-11 Score=85.99 Aligned_cols=108 Identities=13% Similarity=0.205 Sum_probs=92.5
Q ss_pred CcEEcChhhHHHHhcCCCcEEEEEEC--CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412 24 DVVVLTEDNFEKEVGQDRGALVEFYA--PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 24 ~v~~l~~~~f~~~~~~~k~vlV~F~a--~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 101 (239)
++..++..+++..+......+++|-. .-++.+-...-.+.+++++|. ..++.+++||+|+++.++.+|||.++||++
T Consensus 18 g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~-~~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP-DYTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhc-CCceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 66778889999999777667666654 347888888889999999995 345999999999999999999999999999
Q ss_pred EEeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412 102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133 (239)
Q Consensus 102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~ 133 (239)
+|++| +....+.|.++.+++.+||++.++..
T Consensus 97 ~FkdG-k~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 97 VFTGG-NYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EEECC-EEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 99998 66788899999999999999988654
No 101
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.26 E-value=4.2e-11 Score=82.07 Aligned_cols=77 Identities=16% Similarity=0.281 Sum_probs=63.3
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCC
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~ 118 (239)
.+..-+..|+++||++|....+.++++++.++ ++.+..+|.++.++++++|+|.++|++++ +| + ..+.|..+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG-~--~~~~G~~~ 82 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NG-E--LFGFGRMT 82 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CC-E--EEEeCCCC
Confidence 34557888999999999999999999998864 69999999999999999999999999964 44 3 23457667
Q ss_pred HHHHH
Q 026412 119 LEDFV 123 (239)
Q Consensus 119 ~~~l~ 123 (239)
.++++
T Consensus 83 ~~e~~ 87 (89)
T cd03026 83 LEEIL 87 (89)
T ss_pred HHHHh
Confidence 66654
No 102
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.23 E-value=5.2e-11 Score=104.86 Aligned_cols=103 Identities=21% Similarity=0.394 Sum_probs=81.7
Q ss_pred EEcChh-hHHHHhcCC--CcEEEEEECCCChHHhhHhHHHH-HHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCC
Q 026412 26 VVLTED-NFEKEVGQD--RGALVEFYAPWCGHCKNLAPTYE-KVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGF 97 (239)
Q Consensus 26 ~~l~~~-~f~~~~~~~--k~vlV~F~a~wC~~C~~~~~~~~-~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~ 97 (239)
...+.. ..++.+.++ |+|+|+|||+||-.||.+++..- +.....+ -.+++..++|.+.+ .++.++|++-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 344444 677777444 49999999999999999998754 3333332 34799999999843 578899999999
Q ss_pred CeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412 98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 129 (239)
|++++|+.+++++....|..+.+.+.+++++.
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999997777777799999999999999875
No 103
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.23 E-value=6.3e-11 Score=86.76 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=61.8
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc---------------------------cchhHHHH
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------------KYKDLAEK 91 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~---------------------------~~~~l~~~ 91 (239)
++++++|+||++||++|.+..|.+.++.++++. .++.++.|+.+ ....+.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 578999999999999999999999999999974 45777777541 12356778
Q ss_pred cCCCCCCeEEEEeCCCcCccccCCC
Q 026412 92 YGVSGFPTLKFFPKGNKDGEEYGGG 116 (239)
Q Consensus 92 ~~i~~~Pt~~~~~~g~~~~~~~~g~ 116 (239)
|++.++|+.++++++|+....+.|.
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEecC
Confidence 9999999999998776766666653
No 104
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.21 E-value=7e-11 Score=85.96 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=54.7
Q ss_pred HHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCc
Q 026412 34 EKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG 110 (239)
Q Consensus 34 ~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 110 (239)
.....++|+++|.|+++||++|+.|...+ .++.+... .+++.+.++.+....-....+ .++||++|++.+++..
T Consensus 17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~--~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi 93 (130)
T cd02960 17 YKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ--EDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVR 93 (130)
T ss_pred HHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH--hCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCc
Confidence 33347899999999999999999998764 23333332 257777777652211111234 5899999998887777
Q ss_pred cccCCC
Q 026412 111 EEYGGG 116 (239)
Q Consensus 111 ~~~~g~ 116 (239)
.+..|.
T Consensus 94 ~~i~Gy 99 (130)
T cd02960 94 ADITGR 99 (130)
T ss_pred cccccc
Confidence 776664
No 105
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.20 E-value=4.9e-12 Score=98.75 Aligned_cols=105 Identities=29% Similarity=0.525 Sum_probs=92.5
Q ss_pred CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 101 (239)
...+..++.+|+..++. .-+++.|+|||||.|+...|+|+.++.--.+ -.+.+++||++.++.+.-+|-+...|||+
T Consensus 23 ~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 23 SSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred cceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEE
Confidence 45788899999999883 4689999999999999999999999876443 46999999999999999999999999999
Q ss_pred EEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412 102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
-...| ...+|.|.|+..+++.|+..+--
T Consensus 100 HvkDG--eFrrysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 100 HVKDG--EFRRYSGARDKNDFISFEEHREW 127 (248)
T ss_pred Eeecc--ccccccCcccchhHHHHHHhhhh
Confidence 88877 67899999999999999976543
No 106
>smart00594 UAS UAS domain.
Probab=99.19 E-value=3.4e-10 Score=82.43 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=72.2
Q ss_pred hhHHHHh----cCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCCCCeEE
Q 026412 31 DNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 31 ~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~ 101 (239)
.+|++++ .++|+++|+|+++||++|+.+.... .++.+.+. .++++..+|++ ++.+++.+|++.++|++.
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~--~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~ 91 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR--ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVA 91 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH--cCEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence 3455544 6788999999999999999997643 33444443 36888888876 567899999999999999
Q ss_pred EEeCCC-----cCccccCCCCCHHHHHHHH
Q 026412 102 FFPKGN-----KDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 102 ~~~~g~-----~~~~~~~g~~~~~~l~~~l 126 (239)
++...+ ....++.|..++++++.++
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 996554 2356788999999999876
No 107
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.18 E-value=8.8e-11 Score=84.27 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEE
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~v 80 (239)
++++++|.||++||++|+...|.++++++.+.. ++.++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence 478999999999999999999999999888753 3544444
No 108
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.16 E-value=1.6e-10 Score=91.24 Aligned_cols=44 Identities=11% Similarity=0.238 Sum_probs=39.0
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~ 83 (239)
++++++|+|||+||++|++..|.+.++.+++..+ ++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecch
Confidence 5789999999999999999999999999999744 5888888763
No 109
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.16 E-value=2.3e-10 Score=85.86 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=67.8
Q ss_pred cChhhHHHHhcCCCcEEEEEECC-CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------c
Q 026412 28 LTEDNFEKEVGQDRGALVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------Y 85 (239)
Q Consensus 28 l~~~~f~~~~~~~k~vlV~F~a~-wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~ 85 (239)
.+...+.-.--++++++|.||++ |||+|+...|.+.++.+.+... ++.++.|..+. .
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~ 94 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPD 94 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETT
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechH
Confidence 44443332224689999999999 9999999999999999887643 46666655432 2
Q ss_pred hhHHHHcCCC---------CCCeEEEEeCCCcCccccCCCCC
Q 026412 86 KDLAEKYGVS---------GFPTLKFFPKGNKDGEEYGGGRD 118 (239)
Q Consensus 86 ~~l~~~~~i~---------~~Pt~~~~~~g~~~~~~~~g~~~ 118 (239)
..+.+.|++. ++|+++++.++|+....+.|..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 4788899988 99999999988887777666544
No 110
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.15 E-value=2.9e-10 Score=91.52 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=69.8
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------c---hhHH-HHcCC------------
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDLA-EKYGV------------ 94 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~---~~l~-~~~~i------------ 94 (239)
.+++++|+||++||++|....|.+.++.+++..+ ++.++.|++++ . .+++ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 5689999999999999999999999999999754 58888888641 1 1222 23222
Q ss_pred ----------------------CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412 95 ----------------------SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 95 ----------------------~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 130 (239)
...|+.++++++|+...+|.|..+++++.+.|++.+
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 224778888777788888889888888888887765
No 111
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.3e-10 Score=89.75 Aligned_cols=84 Identities=21% Similarity=0.532 Sum_probs=72.8
Q ss_pred CCcEEc-ChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC----
Q 026412 23 DDVVVL-TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS---- 95 (239)
Q Consensus 23 ~~v~~l-~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~---- 95 (239)
..+.-+ +.+.+++.+ ++.+.++|.|++.|.+.|+++.|.+.+++.+|. .+.+.|++||+...++.+++|+|.
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn-~~~lkFGkvDiGrfpd~a~kfris~s~~ 202 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYN-NNLLKFGKVDIGRFPDVAAKFRISLSPG 202 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhC-CCCCcccceeeccCcChHHheeeccCcc
Confidence 345556 677777777 556789999999999999999999999999996 457999999999999999999986
Q ss_pred --CCCeEEEEeCCC
Q 026412 96 --GFPTLKFFPKGN 107 (239)
Q Consensus 96 --~~Pt~~~~~~g~ 107 (239)
..||+++|.+|.
T Consensus 203 srQLPT~ilFq~gk 216 (265)
T KOG0914|consen 203 SRQLPTYILFQKGK 216 (265)
T ss_pred cccCCeEEEEccch
Confidence 589999999884
No 112
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.15 E-value=1.4e-10 Score=78.38 Aligned_cols=70 Identities=27% Similarity=0.563 Sum_probs=51.5
Q ss_pred hHHHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412 32 NFEKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP 104 (239)
Q Consensus 32 ~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 104 (239)
.+.+...++++++|.|+++||++|+.+...+ .++.+.+. .+++.+.||.++...... +...++|++++++
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN--KNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH--HCSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH--CCEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 3444457899999999999999999998776 34444332 379999999986554332 2226799999986
No 113
>PLN02412 probable glutathione peroxidase
Probab=99.09 E-value=6.2e-10 Score=85.53 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=65.5
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--------cchhH----HHHcCC------------
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------KYKDL----AEKYGV------------ 94 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--------~~~~l----~~~~~i------------ 94 (239)
.+++++|+||++||++|++..|.+.++.+.++.. ++.++.|+++ ...++ ++++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 4689999999999999999999999999999754 5888888764 11111 233333
Q ss_pred ----------------------CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412 95 ----------------------SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 95 ----------------------~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
.+.|+.++++++|+....+.|..+.+++...|+..++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 2245666666666666677777777777777766543
No 114
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.06 E-value=1.6e-09 Score=84.87 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=61.7
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe-------------C-----ccchhHHHHcCCCCCCe
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-------------A-----DKYKDLAEKYGVSGFPT 99 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd-------------~-----~~~~~l~~~~~i~~~Pt 99 (239)
..+++++|+||++||++|++..|.+.++.+... .++.++..| . ....++++.|++.++|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 357899999999999999999999999887642 234444322 1 01346788999999999
Q ss_pred EEEEeCCCcCccccCCC-CCHHHHHHHHHH
Q 026412 100 LKFFPKGNKDGEEYGGG-RDLEDFVSFINE 128 (239)
Q Consensus 100 ~~~~~~g~~~~~~~~g~-~~~~~l~~~l~~ 128 (239)
.++++++|+.. +.|. .+.+.+.+.++.
T Consensus 150 ~~lID~~G~I~--~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 150 GVLLDQDGKIR--AKGLTNTREHLESLLEA 177 (189)
T ss_pred EEEECCCCeEE--EccCCCCHHHHHHHHHH
Confidence 99887765543 3343 455666666654
No 115
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.01 E-value=2.7e-09 Score=80.78 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=61.8
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--------c---chhHHHH-cCCC-----------
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------K---YKDLAEK-YGVS----------- 95 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--------~---~~~l~~~-~~i~----------- 95 (239)
++++++|.||++||++|+...|.+.++.+.++.+ ++.++.|+++ . ....+++ +++.
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~ 99 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG 99 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence 5788999999999999999999999999999744 5888888752 1 1223322 3321
Q ss_pred ---------------CCCe----EEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412 96 ---------------GFPT----LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 96 ---------------~~Pt----~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 128 (239)
++|+ .++++++|+....+.|..+.+++...|.+
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~ 151 (153)
T TIGR02540 100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITA 151 (153)
T ss_pred CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 2554 55555555666666777777776666654
No 116
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.01 E-value=6.1e-09 Score=80.29 Aligned_cols=97 Identities=14% Similarity=0.218 Sum_probs=74.3
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------------chhHH
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------------YKDLA 89 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------------~~~l~ 89 (239)
++++++++||++||+.|....+.+.++.++++. .++.++.|..+. ...++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 678999999999999999999999999999864 468888886642 12567
Q ss_pred HHcCCCCCCeEEEEeCCCcCcccc---------CCCCCHHHHHHHHHHhhCCCCCC
Q 026412 90 EKYGVSGFPTLKFFPKGNKDGEEY---------GGGRDLEDFVSFINEKCGTSRDG 136 (239)
Q Consensus 90 ~~~~i~~~Pt~~~~~~g~~~~~~~---------~g~~~~~~l~~~l~~~~~~~~~~ 136 (239)
+.|++...|++++++++|+..... .+..+..++.+.|+..+.....+
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 789999999999998776543221 12356788999998887654443
No 117
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.98 E-value=2e-09 Score=81.38 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=37.5
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~ 83 (239)
.+++++|+||++||+ |+...|.+.++.+.+... ++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence 478999999999999 999999999999999643 5888888653
No 118
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.96 E-value=6.7e-09 Score=73.61 Aligned_cols=73 Identities=37% Similarity=0.742 Sum_probs=62.5
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cchhHHHHcC--CCCCCeEEEEeCCCcCccccCC
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYG--VSGFPTLKFFPKGNKDGEEYGG 115 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~Pt~~~~~~g~~~~~~~~g 115 (239)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .++.+...|+ +..+|++.++.++.. ...+.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhhh
Confidence 78999999999999999999999999999863 5888899996 7889999999 899999998877744 444444
No 119
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.88 E-value=1.1e-08 Score=67.00 Aligned_cols=69 Identities=20% Similarity=0.409 Sum_probs=52.4
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 119 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 119 (239)
+..|+++||++|++..+.+.+ .++.+..+|+++++. +.+++++.++|++++. | +. ..| .++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~--------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~~---~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS--------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-KI---IVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH--------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-EE---Eee-CCH
Confidence 568999999999999888764 147788888886543 5667999999999774 3 22 455 478
Q ss_pred HHHHHHHH
Q 026412 120 EDFVSFIN 127 (239)
Q Consensus 120 ~~l~~~l~ 127 (239)
+.+.+|++
T Consensus 67 ~~i~~~i~ 74 (74)
T TIGR02196 67 EKLDQLLE 74 (74)
T ss_pred HHHHHHhC
Confidence 88888863
No 120
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.84 E-value=4.4e-09 Score=78.17 Aligned_cols=72 Identities=24% Similarity=0.437 Sum_probs=56.9
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccc-------------------------hhHHHH
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY-------------------------KDLAEK 91 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~ 91 (239)
-.+|.+.++|.|.||++|+.+.|.+.++.+....+ ..+.++-|+-|.. .+++++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 35699999999999999999999999988887644 2355555554421 378889
Q ss_pred cCCCCCCeEEEEeCCCcC
Q 026412 92 YGVSGFPTLKFFPKGNKD 109 (239)
Q Consensus 92 ~~i~~~Pt~~~~~~g~~~ 109 (239)
|+|.+.|++++..+.|+.
T Consensus 111 y~v~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTV 128 (157)
T ss_pred cccCcCceeEEecCCCCE
Confidence 999999999998877654
No 121
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.83 E-value=6.6e-08 Score=72.95 Aligned_cols=85 Identities=19% Similarity=0.440 Sum_probs=57.8
Q ss_pred CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHH-H--HHHHHHccCCCCeEEEEEeCccchhHHHHc------
Q 026412 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPT-Y--EKVAAAFTLEDDVVVANLDADKYKDLAEKY------ 92 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~-~--~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~------ 92 (239)
+-.+...+++.|+..-.++|+++|.++.+||++|+.|... | .++++.+. .+++-++||.++.+++...|
T Consensus 19 ~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN--~~FI~VkvDree~Pdid~~y~~~~~~ 96 (163)
T PF03190_consen 19 PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN--RNFIPVKVDREERPDIDKIYMNAVQA 96 (163)
T ss_dssp SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH--HH-EEEEEETTT-HHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHh--CCEEEEEeccccCccHHHHHHHHHHH
Confidence 3445667788999999999999999999999999999753 2 33455542 36888999999999998888
Q ss_pred --CCCCCCeEEEEeCCCc
Q 026412 93 --GVSGFPTLKFFPKGNK 108 (239)
Q Consensus 93 --~i~~~Pt~~~~~~g~~ 108 (239)
|..|+|+.++..+.++
T Consensus 97 ~~~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 97 MSGSGGWPLTVFLTPDGK 114 (163)
T ss_dssp HHS---SSEEEEE-TTS-
T ss_pred hcCCCCCCceEEECCCCC
Confidence 7889999999987754
No 122
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.78 E-value=7.8e-08 Score=69.16 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=68.8
Q ss_pred cCCCcEEEEEECC----CChHHhhHh--HHHHHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCCCCeEEEEe---CC
Q 026412 38 GQDRGALVEFYAP----WCGHCKNLA--PTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFP---KG 106 (239)
Q Consensus 38 ~~~k~vlV~F~a~----wC~~C~~~~--~~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~---~g 106 (239)
++.|.++|++|++ ||.+|+... |.+.+.-+ .++.+...|++ +...++..+++.++|++.++. +.
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln-----~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~ 89 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN-----TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNR 89 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH-----cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCc
Confidence 7789999999999 999998763 44444432 36888888886 456799999999999999883 22
Q ss_pred CcCccccCCCCCHHHHHHHHHHhh
Q 026412 107 NKDGEEYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 107 ~~~~~~~~g~~~~~~l~~~l~~~~ 130 (239)
.+...+..|..+++++...++...
T Consensus 90 ~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 90 MTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred eEEEEEEeCCCCHHHHHHHHHHHH
Confidence 234668899999999999998754
No 123
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.77 E-value=2.8e-08 Score=73.75 Aligned_cols=85 Identities=18% Similarity=0.190 Sum_probs=64.5
Q ss_pred CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHHHcCCCC
Q 026412 39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVSG 96 (239)
Q Consensus 39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~~ 96 (239)
.+++++|.|| +.||+.|....|.+.++.+.+.. .++.++.|..+. ...+++.|++..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 3789999999 58999999999999999988864 457777776542 236777888887
Q ss_pred C---------CeEEEEeCCCcCccccCCCCCHHHHHH
Q 026412 97 F---------PTLKFFPKGNKDGEEYGGGRDLEDFVS 124 (239)
Q Consensus 97 ~---------Pt~~~~~~g~~~~~~~~g~~~~~~l~~ 124 (239)
. |++++++++|+....+.|....+.+.+
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 7 888888876677777777655555443
No 124
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.74 E-value=4.7e-08 Score=61.39 Aligned_cols=60 Identities=42% Similarity=0.843 Sum_probs=49.9
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHH---HcCCCCCCeEEEEeCC
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE---KYGVSGFPTLKFFPKG 106 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Pt~~~~~~g 106 (239)
++.||++||++|+++.+.+.++ ... ..++.+..++++....... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALL--NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hhh--CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 222 3579999999987766554 7899999999999776
No 125
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.73 E-value=7.1e-08 Score=63.90 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=47.3
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc-----CCCCCCeEEEEeCCCcCccccCCCCC
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-----GVSGFPTLKFFPKGNKDGEEYGGGRD 118 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~-----~i~~~Pt~~~~~~g~~~~~~~~g~~~ 118 (239)
++.||++||++|+++.+.+.+.. +.+-.+|+++++.....+ ++.++|++ ++.+| .. ....+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g-~~----l~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADG-SF----LTNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCC-eE----ecCCC
Confidence 67899999999999999886553 334568887666655553 88899997 46555 22 22345
Q ss_pred HHHHHHHH
Q 026412 119 LEDFVSFI 126 (239)
Q Consensus 119 ~~~l~~~l 126 (239)
..++.+.|
T Consensus 68 ~~~~~~~l 75 (77)
T TIGR02200 68 AAQVKAKL 75 (77)
T ss_pred HHHHHHHh
Confidence 55665554
No 126
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.73 E-value=6.5e-08 Score=75.42 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=35.9
Q ss_pred CCCcE-EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412 39 QDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83 (239)
Q Consensus 39 ~~k~v-lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~ 83 (239)
.++++ ++.+||+||++|++..|.+.++.++++.. ++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecc
Confidence 46654 55669999999999999999999999743 5888888764
No 127
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.71 E-value=8e-08 Score=69.69 Aligned_cols=69 Identities=19% Similarity=0.515 Sum_probs=57.0
Q ss_pred CCCcEEEEEECC-CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHHHcCCC-
Q 026412 39 QDRGALVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVS- 95 (239)
Q Consensus 39 ~~k~vlV~F~a~-wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~- 95 (239)
.+++++|.||+. ||++|+...+.+.++...++. .++.++.|..+. +..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 569999999999 999999999999999999874 368888777653 23677888888
Q ss_pred -----CCCeEEEEeCCCc
Q 026412 96 -----GFPTLKFFPKGNK 108 (239)
Q Consensus 96 -----~~Pt~~~~~~g~~ 108 (239)
.+|++++++++++
T Consensus 103 ~~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGK 120 (124)
T ss_dssp TTTSEESEEEEEEETTSB
T ss_pred ccCCceEeEEEEECCCCE
Confidence 8889888887754
No 128
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.70 E-value=1.2e-07 Score=73.27 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=66.3
Q ss_pred CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412 39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 89 (239)
Q Consensus 39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 89 (239)
.+++++|.|| +.||++|....|.+.++++++.. .++.++.|.+|. ...++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 4689999999 89999999999999999999864 346666665442 22566
Q ss_pred HHcCCC------CCCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHh
Q 026412 90 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK 129 (239)
Q Consensus 90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~ 129 (239)
+.|++. ..|+.+++++.|.....+.+ .++.+++.+.|+..
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 677875 46788888877666555532 35677788888654
No 129
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.69 E-value=1.5e-07 Score=75.03 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=66.5
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----------cchhHHHHcCCCCCCeEEEEeCCC
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------KYKDLAEKYGVSGFPTLKFFPKGN 107 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~i~~~Pt~~~~~~g~ 107 (239)
..+.-+++||.+.|++|+.+.|.+..+++.++ +.+..|+.| .+..++++++|..+|+++++..++
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 47789999999999999999999999999984 666666665 346889999999999999998765
Q ss_pred cCc-cccCCCCCHHHHHH
Q 026412 108 KDG-EEYGGGRDLEDFVS 124 (239)
Q Consensus 108 ~~~-~~~~g~~~~~~l~~ 124 (239)
... ..-.|..+.++|.+
T Consensus 195 ~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELED 212 (215)
T ss_pred CeEEEEeeecCCHHHHHH
Confidence 333 33357888888765
No 130
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=4e-07 Score=74.45 Aligned_cols=113 Identities=18% Similarity=0.366 Sum_probs=88.6
Q ss_pred CCCcEEcChhhHHHHhc-C--CCcEEEEEECC----CChHHhhHhHHHHHHHHHccCC------CCeEEEEEeCccchhH
Q 026412 22 ADDVVVLTEDNFEKEVG-Q--DRGALVEFYAP----WCGHCKNLAPTYEKVAAAFTLE------DDVVVANLDADKYKDL 88 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~-~--~k~vlV~F~a~----wC~~C~~~~~~~~~~a~~~~~~------~~v~~~~vd~~~~~~l 88 (239)
..++..+++++|.+.+. . +-.++|.|+|. .|+-|++...++.-++..+..+ .++.|..||.++.++.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 56899999999999993 2 33488889874 4999999999999999876532 2688999999999999
Q ss_pred HHHcCCCCCCeEEEEeCCC-c--CccccC---CCCCHHHHHHHHHHhhCCCC
Q 026412 89 AEKYGVSGFPTLKFFPKGN-K--DGEEYG---GGRDLEDFVSFINEKCGTSR 134 (239)
Q Consensus 89 ~~~~~i~~~Pt~~~~~~g~-~--~~~~~~---g~~~~~~l~~~l~~~~~~~~ 134 (239)
.++++++..|++++|.+.. + ....+. -...+|++.+|+++++....
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 9999999999999994332 1 222221 23459999999999887554
No 131
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.66 E-value=1.6e-07 Score=77.07 Aligned_cols=102 Identities=21% Similarity=0.345 Sum_probs=74.1
Q ss_pred CCcEEcC-hhhHHHHhcC---CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412 23 DDVVVLT-EDNFEKEVGQ---DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 98 (239)
Q Consensus 23 ~~v~~l~-~~~f~~~~~~---~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 98 (239)
..+.+++ ++.|-+.+.. +..|||+||-+.++.|..+...+..+|..|+ .+.|++|.....+ +..+|.+..+|
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp---~vKFvkI~a~~~~-~~~~f~~~~LP 200 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP---EVKFVKIRASKCP-ASENFPDKNLP 200 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T---TSEEEEEEECGCC-TTTTS-TTC-S
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEEehhccC-cccCCcccCCC
Confidence 4577775 5889888833 4579999999999999999999999999997 7999999887654 67899999999
Q ss_pred eEEEEeCCCcCccccC------C-CCCHHHHHHHHHHh
Q 026412 99 TLKFFPKGNKDGEEYG------G-GRDLEDFVSFINEK 129 (239)
Q Consensus 99 t~~~~~~g~~~~~~~~------g-~~~~~~l~~~l~~~ 129 (239)
|+++|++| .....+. | ..+..++..||.+.
T Consensus 201 tllvYk~G-~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 201 TLLVYKNG-DLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEEETT-EEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEEECC-EEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999987 3332222 2 36778888888764
No 132
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.64 E-value=2.5e-07 Score=71.07 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=35.9
Q ss_pred CCCcEEEEEECCC-ChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412 39 QDRGALVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83 (239)
Q Consensus 39 ~~k~vlV~F~a~w-C~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~ 83 (239)
.+++++|+||+.| |++|....|.+.++++.+. ++.++.|.+|
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCC
Confidence 4789999999999 9999999999999998873 5777777655
No 133
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.63 E-value=2.2e-07 Score=69.57 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=35.3
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~ 85 (239)
+..+++.|+++||++|+...|.+.++.+.+.. .++.++.|..+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCH
Confidence 34455555699999999999999999999863 3588888887644
No 134
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.61 E-value=1.6e-06 Score=67.16 Aligned_cols=106 Identities=23% Similarity=0.300 Sum_probs=88.0
Q ss_pred cCCCcEEcChhhHHHHhcCCCc-EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC--CC
Q 026412 21 LADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GF 97 (239)
Q Consensus 21 ~~~~v~~l~~~~f~~~~~~~k~-vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~ 97 (239)
.-+.+..++..++..+...+.+ +++.|+.........+...+..++..++ +.+.|+.+|++..+.+++.+|++ .+
T Consensus 75 ~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~~f~~~d~~~~~~~~~~~~i~~~~~ 152 (184)
T PF13848_consen 75 SFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK--GKINFVYVDADDFPRLLKYFGIDEDDL 152 (184)
T ss_dssp SSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT--TTSEEEEEETTTTHHHHHHTTTTTSSS
T ss_pred ccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC--CeEEEEEeehHHhHHHHHHcCCCCccC
Confidence 3456899999999999987766 8888887788889999999999999986 46999999999889999999998 89
Q ss_pred CeEEEEeCCC-cCccccCCCCCHHHHHHHHHH
Q 026412 98 PTLKFFPKGN-KDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 98 Pt~~~~~~g~-~~~~~~~g~~~~~~l~~~l~~ 128 (239)
|+++++.... .....+.|..+.+.+.+|+++
T Consensus 153 P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 153 PALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9999998432 322334789999999999974
No 135
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.60 E-value=3.1e-07 Score=71.84 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=65.2
Q ss_pred CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHc
Q 026412 39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY 92 (239)
Q Consensus 39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~ 92 (239)
.+++++|.|| +.||++|....|.+.++.+.+... ++.++.|.+|. ...+++.|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 4689999999 999999999999999999888643 45566555432 23677888
Q ss_pred CCC------CCCeEEEEeCCCcCccccC----CCCCHHHHHHHHHH
Q 026412 93 GVS------GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINE 128 (239)
Q Consensus 93 ~i~------~~Pt~~~~~~g~~~~~~~~----g~~~~~~l~~~l~~ 128 (239)
|+. ..|+.++++.+|.....+. ..++.+++.+.|..
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 886 3588888876666544332 23688888887753
No 136
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.58 E-value=3.4e-07 Score=60.79 Aligned_cols=73 Identities=23% Similarity=0.541 Sum_probs=54.7
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCC-CCCHHHHH
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG-GRDLEDFV 123 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g-~~~~~~l~ 123 (239)
|.+++++|++|..+...+.+++..+. +.+--+|..+.+++ .+|||.++|++++ +| ...+.| ..+.+++.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng---~~~~~G~~p~~~el~ 72 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NG---KVVFVGRVPSKEELK 72 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TT---EEEEESS--HHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CC---EEEEEecCCCHHHHH
Confidence 34478889999999999999998862 55555666666676 9999999999844 44 256788 78899999
Q ss_pred HHHH
Q 026412 124 SFIN 127 (239)
Q Consensus 124 ~~l~ 127 (239)
+||+
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 137
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.54 E-value=2.4e-07 Score=62.45 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=41.7
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-----hHHHHcCCCCCCeEE
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----DLAEKYGVSGFPTLK 101 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~ 101 (239)
++.|+++|||+|+++.+.+.++. .. +.+.+..+|.+.+. .+.+.+++.++|+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~--~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK--PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC--CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 57899999999999999998876 21 34777788776443 366778999999973
No 138
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.54 E-value=2.7e-07 Score=67.59 Aligned_cols=81 Identities=28% Similarity=0.501 Sum_probs=52.0
Q ss_pred hhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc---CCCCCCeEEEEeC
Q 026412 30 EDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY---GVSGFPTLKFFPK 105 (239)
Q Consensus 30 ~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~~ 105 (239)
++....+. ...+.-++.|..+|||.|....|.+.++++..+ ++.+--+..|++.++.++| |...+|+++++++
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 33334333 345568888999999999999999999999854 6777777778788777766 5667999999987
Q ss_pred CCcCcccc
Q 026412 106 GNKDGEEY 113 (239)
Q Consensus 106 g~~~~~~~ 113 (239)
+++...++
T Consensus 107 ~~~~lg~w 114 (129)
T PF14595_consen 107 DGKELGRW 114 (129)
T ss_dssp T--EEEEE
T ss_pred CCCEeEEE
Confidence 65554444
No 139
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.53 E-value=6.3e-07 Score=67.76 Aligned_cols=80 Identities=23% Similarity=0.240 Sum_probs=55.4
Q ss_pred CCCcEEEEEECC-CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc---------------------hhHHHHcCCCC
Q 026412 39 QDRGALVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLAEKYGVSG 96 (239)
Q Consensus 39 ~~k~vlV~F~a~-wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~i~~ 96 (239)
++++++|.||+. ||+.|....+.+.++.+.+.. .++.++.|..+.. ..+++.|++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 568999999975 688899999999999988864 3577887776532 24566666643
Q ss_pred C------------CeEEEEeCCCcCccccCCCCCH
Q 026412 97 F------------PTLKFFPKGNKDGEEYGGGRDL 119 (239)
Q Consensus 97 ~------------Pt~~~~~~g~~~~~~~~g~~~~ 119 (239)
. |+.++++++|+....|.|....
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~ 142 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS 142 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCCCcc
Confidence 2 4556666555665666664333
No 140
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.50 E-value=2.3e-07 Score=70.81 Aligned_cols=88 Identities=24% Similarity=0.362 Sum_probs=76.6
Q ss_pred CcEEcC-hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412 24 DVVVLT-EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 24 ~v~~l~-~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 102 (239)
...++. ...|-+.+.++.-|++.||-|.-..|+-|...++.+|..+- ...|++||+...|-++.+++|..+|++.+
T Consensus 67 ~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~---eTrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV---ETRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc---cceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 344444 78888888889999999999999999999999999999975 68899999999999999999999999999
Q ss_pred EeCCCcCccccCC
Q 026412 103 FPKGNKDGEEYGG 115 (239)
Q Consensus 103 ~~~g~~~~~~~~g 115 (239)
|.+| .....+.|
T Consensus 144 ~k~g-~~~D~iVG 155 (211)
T KOG1672|consen 144 FKNG-KTVDYVVG 155 (211)
T ss_pred EEcC-EEEEEEee
Confidence 9998 44455555
No 141
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.48 E-value=3.6e-07 Score=67.93 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=38.6
Q ss_pred CCCcEEEEEECCCChH-HhhHhHHHHHHHHHccCCC--CeEEEEEeCc
Q 026412 39 QDRGALVEFYAPWCGH-CKNLAPTYEKVAAAFTLED--DVVVANLDAD 83 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~-C~~~~~~~~~~a~~~~~~~--~v~~~~vd~~ 83 (239)
.+++++|.||++||++ |....+.+.++.+.+..++ ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 9999999999999987542 5888887764
No 142
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.47 E-value=1e-06 Score=66.03 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=35.1
Q ss_pred CCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412 40 DRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83 (239)
Q Consensus 40 ~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~ 83 (239)
.++++|.|| ++||+.|....|.+.++.+++.. .++.++.|..+
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d 71 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVD 71 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCC
Confidence 378888887 99999999999999999999864 35777777654
No 143
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.46 E-value=1.1e-06 Score=69.67 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=66.9
Q ss_pred CCCcEEE-EEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc---------------------------cchhHHH
Q 026412 39 QDRGALV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------------KYKDLAE 90 (239)
Q Consensus 39 ~~k~vlV-~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~---------------------------~~~~l~~ 90 (239)
.++.+++ .||+.||+.|....+.+.+..+++... ++.++.|.+| ...++++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 4566555 689999999999999999999888643 4556655443 2246778
Q ss_pred HcCCC------CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHhh
Q 026412 91 KYGVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEKC 130 (239)
Q Consensus 91 ~~~i~------~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~~ 130 (239)
.||+. .+|+.++++++|+..... .++++.+++...|+...
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 88884 489999998776543322 45689999999997654
No 144
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.45 E-value=1e-06 Score=65.68 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=36.0
Q ss_pred CCCcEEEEEECCC-ChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412 39 QDRGALVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83 (239)
Q Consensus 39 ~~k~vlV~F~a~w-C~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~ 83 (239)
.++++++.||+.| |++|+...|.+.++.+++. ++.++.|+.+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d 67 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD 67 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence 4689999999998 6999999999999999874 5777777765
No 145
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.45 E-value=2.3e-06 Score=69.66 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=69.3
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----------hhHHHHcCCCCCCeEEEEeCCC
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------KDLAEKYGVSGFPTLKFFPKGN 107 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----------~~l~~~~~i~~~Pt~~~~~~g~ 107 (239)
..+.-+++||...|++|+++.|.+..+++.++ +.+..|++|.. ...++++|+..+|++++...+.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg----i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t 224 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG----ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS 224 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence 35689999999999999999999999999984 66666666532 4588999999999999997764
Q ss_pred cCcc-ccCCCCCHHHHHHHHHHhh
Q 026412 108 KDGE-EYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 108 ~~~~-~~~g~~~~~~l~~~l~~~~ 130 (239)
+... .-.|..+.++|.+=+...+
T Consensus 225 ~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 225 QKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHH
Confidence 4333 2358889999887665543
No 146
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.44 E-value=2.2e-06 Score=66.95 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=67.7
Q ss_pred CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHc
Q 026412 39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY 92 (239)
Q Consensus 39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~ 92 (239)
.++++++.|| +.||+.|....+.+.+..+++... ++.++.|..|. +..+++.|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 4678999999 999999999999999999998643 46666665442 34788899
Q ss_pred CC----CCC--CeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412 93 GV----SGF--PTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 129 (239)
Q Consensus 93 ~i----~~~--Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~ 129 (239)
|+ .+. |+.++++++|+....+ ...++.+++.+.|...
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 98 356 9999998776643332 2347899999988654
No 147
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.43 E-value=1e-06 Score=71.22 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=59.8
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEE--------------------------------------
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL-------------------------------------- 80 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~v-------------------------------------- 80 (239)
+++..++.|+.|.||+|+++++.+.++.+. ++.+..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 356789999999999999999998876431 1222111
Q ss_pred ------eCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412 81 ------DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 81 ------d~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 129 (239)
+++++.++++++||+++|+++ +.+| ....|..+++.|.++|++.
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G----~~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNG----TLVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccccchHHHhHHHHHHcCCccccEEE-EcCC----eEeeCCCCHHHHHHHHHHc
Confidence 112345889999999999987 6565 2458999999999999753
No 148
>PRK15000 peroxidase; Provisional
Probab=98.40 E-value=2e-06 Score=67.99 Aligned_cols=90 Identities=12% Similarity=0.303 Sum_probs=68.2
Q ss_pred CCCcEEEEEEC-CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412 39 QDRGALVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 89 (239)
Q Consensus 39 ~~k~vlV~F~a-~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 89 (239)
+++++++.||+ .||+.|....+.+.+..+++... ++.++.|.+|. ...++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 57899999999 59999999999999999998743 46677666552 22567
Q ss_pred HHcCCC------CCCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHh
Q 026412 90 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK 129 (239)
Q Consensus 90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~ 129 (239)
+.||+. .+|+.+++++.|.....+.| .++.+++.+.++..
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 778887 68999999877665443333 47899999888653
No 149
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.36 E-value=1.7e-06 Score=64.05 Aligned_cols=44 Identities=16% Similarity=0.350 Sum_probs=37.0
Q ss_pred CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412 39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83 (239)
Q Consensus 39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~ 83 (239)
.+++++|.|| +.||+.|....|.+.++.+++. ..++.++.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~-~~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA-KGGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 6789999999 7899999999999999999985 335777777655
No 150
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.34 E-value=2.7e-06 Score=61.09 Aligned_cols=74 Identities=23% Similarity=0.448 Sum_probs=49.1
Q ss_pred hhHHHHh----cCCCcEEEEEEC-------CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------chhHHH--
Q 026412 31 DNFEKEV----GQDRGALVEFYA-------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------YKDLAE-- 90 (239)
Q Consensus 31 ~~f~~~~----~~~k~vlV~F~a-------~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------~~~l~~-- 90 (239)
++|.+.+ .++++++|.|++ +|||.|....|.+++.-...+. +..++.|.+.+ +..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcc
Confidence 4555665 456889999986 6999999999999988877543 56666665531 123444
Q ss_pred HcCCCCCCeEEEEeCC
Q 026412 91 KYGVSGFPTLKFFPKG 106 (239)
Q Consensus 91 ~~~i~~~Pt~~~~~~g 106 (239)
++++.++||++-+..+
T Consensus 84 ~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETG 99 (119)
T ss_dssp CC---SSSEEEECTSS
T ss_pred eeeeeecceEEEECCC
Confidence 5899999999998655
No 151
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2.9e-06 Score=59.75 Aligned_cols=75 Identities=19% Similarity=0.430 Sum_probs=56.2
Q ss_pred hhhHHHHh---cCCCcEEEEEEC--------CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------chhHHHH
Q 026412 30 EDNFEKEV---GQDRGALVEFYA--------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------YKDLAEK 91 (239)
Q Consensus 30 ~~~f~~~~---~~~k~vlV~F~a--------~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------~~~l~~~ 91 (239)
.+.|++.+ .+++.++|.|++ +|||.|.+..|.+.+.-+..+ .++.|+.|++-+ +..+...
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap--~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP--EDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC--CceEEEEEEecCCCcccCCCCccccC
Confidence 35666666 455669999986 899999999999998888654 467788887642 2345666
Q ss_pred cCC-CCCCeEEEEeCC
Q 026412 92 YGV-SGFPTLKFFPKG 106 (239)
Q Consensus 92 ~~i-~~~Pt~~~~~~g 106 (239)
.++ .++||++=+.++
T Consensus 90 ~~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKRQ 105 (128)
T ss_pred CCceeecceeeEEcCc
Confidence 677 889999888643
No 152
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.29 E-value=3.6e-06 Score=54.68 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=44.7
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc----CCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY----GVSGFPTLKFFPKGNKDGEEYGGGRDL 119 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~----~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 119 (239)
++.|+++||++|.++.+.+.+. ++.+..+|++.++...+.+ ++.++|++++ +| ....| .+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~----~~i~g-~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD----EHLSG-FRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC----EEEec-CCH
Confidence 5789999999999988777652 3556677777655444443 6789999865 33 23333 456
Q ss_pred HHHHHH
Q 026412 120 EDFVSF 125 (239)
Q Consensus 120 ~~l~~~ 125 (239)
+.+.++
T Consensus 67 ~~l~~~ 72 (73)
T cd02976 67 DKLRAL 72 (73)
T ss_pred HHHHhh
Confidence 666554
No 153
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.28 E-value=8.9e-06 Score=65.86 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=66.2
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------chhHHHHcCCCCCCeEEEEeCCCc
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------YKDLAEKYGVSGFPTLKFFPKGNK 108 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------~~~l~~~~~i~~~Pt~~~~~~g~~ 108 (239)
.+.-+++||.+.|++|.++.|.+..+++.++ +.+..|.+|. +...+++++|..+|+++++..+..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg----~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG----LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSG 218 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCC
Confidence 5689999999999999999999999999985 5555554442 234678999999999999987754
Q ss_pred Cccc-cCCCCCHHHHHHHHHHh
Q 026412 109 DGEE-YGGGRDLEDFVSFINEK 129 (239)
Q Consensus 109 ~~~~-~~g~~~~~~l~~~l~~~ 129 (239)
...+ -.|..+.++|.+=+...
T Consensus 219 ~~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 219 SVRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred cEEEEeeccCCHHHHHHHHHHH
Confidence 3332 35888999987666544
No 154
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.28 E-value=2e-05 Score=54.51 Aligned_cols=90 Identities=27% Similarity=0.360 Sum_probs=70.7
Q ss_pred hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcC
Q 026412 30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKD 109 (239)
Q Consensus 30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 109 (239)
.+..+..+...++++|-|+.++|+ .....|.++|..+. +.+.|+.+. +.++++++++. -|++.+|++....
T Consensus 7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r--~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~ 77 (97)
T cd02981 7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLR--DDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEE 77 (97)
T ss_pred HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcc--cCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccC
Confidence 344666678889999999999997 46678899998875 357777665 45778888775 5899999876556
Q ss_pred ccccCCCCCHHHHHHHHHH
Q 026412 110 GEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 110 ~~~~~g~~~~~~l~~~l~~ 128 (239)
+..|.|..+.++|.+||..
T Consensus 78 ~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CccCCCCCCHHHHHHHHHh
Confidence 7789999999999999864
No 155
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.28 E-value=1.9e-05 Score=56.36 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=80.0
Q ss_pred cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHH---ccCCCCeEEEEEeCccchhHHHHcCCCC--CCe
Q 026412 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA---FTLEDDVVVANLDADKYKDLAEKYGVSG--FPT 99 (239)
Q Consensus 25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~---~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt 99 (239)
|.+++.+++.....++.+..+.|+ .-..-....+.+.++|+. ++ +.+.|+.+|.+......+.||++. +|.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~k--gki~Fv~~d~~~~~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEK--GAINFLTADGDKFRHPLLHLGKTPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcC--ceEEEEEEechHhhhHHHHcCCCHhHCCE
Confidence 457788999888877777777777 222346778899999999 76 569999999998777899999996 999
Q ss_pred EEEEeCCCcCccc-cCCCCCHHHHHHHHHHhh
Q 026412 100 LKFFPKGNKDGEE-YGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 100 ~~~~~~g~~~~~~-~~g~~~~~~l~~~l~~~~ 130 (239)
+.+...++..... +.+..+++.+.+|+++..
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 9988765322233 567899999999998865
No 156
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.26 E-value=1e-05 Score=73.68 Aligned_cols=95 Identities=19% Similarity=0.352 Sum_probs=75.7
Q ss_pred CcEEcChhhHHHHhcCCCcE-EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412 24 DVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 24 ~v~~l~~~~f~~~~~~~k~v-lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 102 (239)
.-..++.+..+.+-.=++++ +-.|.++||++|.+....+.+++...+ ++..-.+|+...++++++|+|.++|++++
T Consensus 459 ~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 459 PGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV 535 (555)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEECcccHHHHHhCCceecCEEEE
Confidence 33566777777665445665 445689999999999999999998864 78888999999999999999999999855
Q ss_pred EeCCCcCccccCCCCCHHHHHHHH
Q 026412 103 FPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 103 ~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
+| + ..+.|..+.+++.+||
T Consensus 536 --~~-~--~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 536 --DD-Q--QVYFGKKTIEEMLELI 554 (555)
T ss_pred --CC-E--EEEeeCCCHHHHHHhh
Confidence 33 2 3467888999999886
No 157
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.25 E-value=1.3e-05 Score=72.45 Aligned_cols=100 Identities=16% Similarity=0.279 Sum_probs=79.9
Q ss_pred CcEEcChhhHHHHhcCCCc-EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412 24 DVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 24 ~v~~l~~~~f~~~~~~~k~-vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 102 (239)
.-..++++..+.+-.=+++ -+-.|++++||+|......+.+++...+ ++..-.+|...+++++++|++.++|++++
T Consensus 99 ~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~---~i~~~~id~~~~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 99 HPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP---NITHTMIDGALFQDEVEARNIMAVPTVFL 175 (517)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC---CceEEEEEchhCHhHHHhcCCcccCEEEE
Confidence 3455677766666533344 5888999999999999999999998754 78898999999999999999999999854
Q ss_pred EeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412 103 FPKGNKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
+| + ..+.|..+.+++.+.+.+..+
T Consensus 176 --~~-~--~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 176 --NG-E--EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred --CC-c--EEEecCCCHHHHHHHHhcccc
Confidence 44 2 347799999999999887554
No 158
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.25 E-value=9.3e-06 Score=64.56 Aligned_cols=33 Identities=21% Similarity=0.601 Sum_probs=27.6
Q ss_pred CCCcEEEEEECCCChHHhhHhHHH---HHHHHHccC
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTL 71 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~ 71 (239)
.+++.+|.|+...||||..++|.+ ..+.+.++.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 357889999999999999999876 777777753
No 159
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.24 E-value=7.9e-06 Score=64.75 Aligned_cols=87 Identities=18% Similarity=0.303 Sum_probs=63.0
Q ss_pred cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------------chhHHHHcCC
Q 026412 42 GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAEKYGV 94 (239)
Q Consensus 42 ~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~i 94 (239)
.+++.|+++||+.|....+.+.++.+++... ++.++.|.+|. ...+++.||+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence 4566889999999999999999999998643 47777766552 2367788887
Q ss_pred C----C----CCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHh
Q 026412 95 S----G----FPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK 129 (239)
Q Consensus 95 ~----~----~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~ 129 (239)
. + .|+.++++++|+....+.+ .++.+++.+.|...
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 5 2 3457788766665433333 57889999888764
No 160
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.24 E-value=4.3e-06 Score=56.63 Aligned_cols=77 Identities=26% Similarity=0.348 Sum_probs=55.5
Q ss_pred EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcC--CCCCCeEEEEeCCCcCccccCCC
Q 026412 43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYG--VSGFPTLKFFPKGNKDGEEYGGG 116 (239)
Q Consensus 43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~--i~~~Pt~~~~~~g~~~~~~~~g~ 116 (239)
-++.|+.+||++|++....++++...+. ++.+..+|++.+ .++....+ +..+|+++ .+| + +.|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g-~----~ig- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQ-K----HIG- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECC-E----EEc-
Confidence 3688999999999999999999987642 677888888753 34555555 47899974 344 2 122
Q ss_pred CCHHHHHHHHHHhhC
Q 026412 117 RDLEDFVSFINEKCG 131 (239)
Q Consensus 117 ~~~~~l~~~l~~~~~ 131 (239)
..+++.++++..++
T Consensus 71 -g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 -GCTDFEAYVKENLG 84 (85)
T ss_pred -CHHHHHHHHHHhcc
Confidence 45788888876653
No 161
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.21 E-value=6.3e-06 Score=64.97 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=54.7
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEE----------------------------------------
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA---------------------------------------- 78 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~---------------------------------------- 78 (239)
+.+..++.|+.+.||+|+++++.+.+. . +++.+.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~--~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----A--DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----c--CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 357899999999999999999888751 1 112221
Q ss_pred -----EEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412 79 -----NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 79 -----~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
..+++.+..+++++||+++|+++ +.+| ..+.|..+.+++.++|
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G----~~~~G~~~~~~l~~~L 197 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-LADG----RVVPGAPPAAQLEALL 197 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-ECCC----eEecCCCCHHHHHhhC
Confidence 11222345788999999999996 6665 2357888888887764
No 162
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.9e-06 Score=67.51 Aligned_cols=88 Identities=17% Similarity=0.362 Sum_probs=71.8
Q ss_pred hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcC
Q 026412 30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKD 109 (239)
Q Consensus 30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 109 (239)
...| ...+.+.+++.||++||..|+++...+..+++.. .++.+++++.+..++++..+.+...|++.++..| ..
T Consensus 9 ~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~---~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~-~~ 82 (227)
T KOG0911|consen 9 QEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF---KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG-EK 82 (227)
T ss_pred HHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh---hhheeeeehhhhhhHHHHHHHHhcCceeeeeecc-hh
Confidence 3455 3357889999999999999999999999999887 4799999999999999999999999999998776 44
Q ss_pred ccccCCCCCHHHHH
Q 026412 110 GEEYGGGRDLEDFV 123 (239)
Q Consensus 110 ~~~~~g~~~~~~l~ 123 (239)
..+..|...+....
T Consensus 83 v~~l~~~~~~~~~~ 96 (227)
T KOG0911|consen 83 VDRLSGADPPFLVS 96 (227)
T ss_pred hhhhhccCcHHHHH
Confidence 55556654443333
No 163
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.18 E-value=3.5e-05 Score=58.42 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=62.7
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--c-------------------------------
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--Y------------------------------- 85 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~------------------------------- 85 (239)
..+++|+.|+.+.||||+++.+.+.++.+.+-..+.+.+...+... .
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4577899999999999999999999999988545677777665421 0
Q ss_pred -----------------------------------hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412 86 -----------------------------------KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 86 -----------------------------------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 128 (239)
...+.+++|.++||+++ +| + .+.|..+.+++.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG-~---~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NG-K---YVVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TT-C---EEETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CC-E---EeCCCCCHHHHHHHHcC
Confidence 04556789999999876 55 2 25788899999998864
No 164
>PRK13189 peroxiredoxin; Provisional
Probab=98.16 E-value=1.3e-05 Score=64.30 Aligned_cols=90 Identities=13% Similarity=0.203 Sum_probs=64.9
Q ss_pred CCCc-EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------------chhHHH
Q 026412 39 QDRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE 90 (239)
Q Consensus 39 ~~k~-vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~ 90 (239)
.+++ +++.|++.||+.|....+.+.+.++++... ++.++.|.+|. ...+++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence 4564 455778999999999999999999998643 46666665442 236778
Q ss_pred HcCCC-------CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412 91 KYGVS-------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 129 (239)
Q Consensus 91 ~~~i~-------~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~ 129 (239)
.||+. .+|+.++++++|...... ...++.+++...|+..
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88875 468888888776643222 3567899999998764
No 165
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.16 E-value=6.4e-06 Score=64.01 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=56.7
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------c---hhHHH-HcCCCCCCeEEEEeCC
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDLAE-KYGVSGFPTLKFFPKG 106 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~---~~l~~-~~~i~~~Pt~~~~~~g 106 (239)
.+++++|.|||+||++|++ .|.++++.++|+. .++.+..+.|++ . ..+++ +|++. +|.+-=..
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~-~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~d-- 98 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD-QGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKIE-- 98 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh-CCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEEc--
Confidence 4789999999999999975 8899999999974 459999998842 1 24454 57763 66442221
Q ss_pred CcCccccCCCCCHHHHHHHHHHhhC
Q 026412 107 NKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 107 ~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
-.|. ....+-+|+++.++
T Consensus 99 ------vnG~-~~~pl~~~Lk~~~~ 116 (183)
T PRK10606 99 ------VNGE-GRHPLYQKLIAAAP 116 (183)
T ss_pred ------cCCC-CCCHHHHHHHHhCC
Confidence 1222 45567788887765
No 166
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.15 E-value=2.9e-05 Score=58.14 Aligned_cols=32 Identities=38% Similarity=0.632 Sum_probs=27.6
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHcc
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT 70 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~ 70 (239)
..++.++.|+.++||||+++.|.+.++...++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 35789999999999999999999998876653
No 167
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.15 E-value=1.9e-05 Score=64.58 Aligned_cols=90 Identities=16% Similarity=0.276 Sum_probs=66.3
Q ss_pred CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412 39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 89 (239)
Q Consensus 39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 89 (239)
.++++++.|| +.||+.|....+.+.+..+++... ++.++.|.+|. +..++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 4567777777 899999999999999999988643 35555555442 24688
Q ss_pred HHcCCC-----CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412 90 EKYGVS-----GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 129 (239)
Q Consensus 90 ~~~~i~-----~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~ 129 (239)
+.||+. ..|+.++++++|.....+ ...++.+++...|...
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 899985 479999998766644332 3457999999888654
No 168
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=5.1e-05 Score=53.97 Aligned_cols=104 Identities=19% Similarity=0.378 Sum_probs=78.2
Q ss_pred hhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412 30 EDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 107 (239)
Q Consensus 30 ~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 107 (239)
....++++ ...+.+++-|.-.|-|.|..+...+.++++... +-..++-+|+++-+++.+-|++...|++.+|-++.
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs--nfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS--NFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHh--hceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 45667777 567889999999999999999999999999875 23567778999999999999999999998886664
Q ss_pred cCccccC-CC--------CCHHHHHHHHHHhhCCCCC
Q 026412 108 KDGEEYG-GG--------RDLEDFVSFINEKCGTSRD 135 (239)
Q Consensus 108 ~~~~~~~-g~--------~~~~~l~~~l~~~~~~~~~ 135 (239)
-....+. |. .+.+++++.+.-...-++.
T Consensus 89 HmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~K 125 (142)
T KOG3414|consen 89 HMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGARK 125 (142)
T ss_pred eEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhhc
Confidence 3333332 21 3566777766655443333
No 169
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.10 E-value=2.1e-05 Score=62.87 Aligned_cols=89 Identities=12% Similarity=0.199 Sum_probs=66.1
Q ss_pred CCc-EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------------chhHHHH
Q 026412 40 DRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAEK 91 (239)
Q Consensus 40 ~k~-vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~ 91 (239)
+++ +++.|++.||+.|....+.+.++.++|... ++.++.|.+|. +..+++.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 455 567899999999999999999999998643 46677666553 2357788
Q ss_pred cCCC-------CCCeEEEEeCCCcCccc--c--CCCCCHHHHHHHHHHh
Q 026412 92 YGVS-------GFPTLKFFPKGNKDGEE--Y--GGGRDLEDFVSFINEK 129 (239)
Q Consensus 92 ~~i~-------~~Pt~~~~~~g~~~~~~--~--~g~~~~~~l~~~l~~~ 129 (239)
||+. ..|+.++++++|+.... | ...++.+++.+.|+..
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 57999999877664332 2 2347899999998754
No 170
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.10 E-value=1.9e-05 Score=63.12 Aligned_cols=90 Identities=12% Similarity=0.170 Sum_probs=65.3
Q ss_pred CCCcEEE-EEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------------chhHHH
Q 026412 39 QDRGALV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE 90 (239)
Q Consensus 39 ~~k~vlV-~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~ 90 (239)
.++++++ .|+++||+.|....+.+.+.+.++... ++.++.|.+|. +..+++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 3555554 788999999999999999999998643 46676666552 236677
Q ss_pred HcCCC-------CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412 91 KYGVS-------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 129 (239)
Q Consensus 91 ~~~i~-------~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~ 129 (239)
.||+. ..|+.++++++|.....+ .-.|+.+++...|+..
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88863 368888888776644322 2347999999999764
No 171
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.07 E-value=2.3e-05 Score=49.23 Aligned_cols=51 Identities=24% Similarity=0.424 Sum_probs=38.0
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCCCCCeEEE
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF 102 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~ 102 (239)
++.|+.+||++|+.....+++. ++.+..+|++..+ ++.+..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999998777422 4667777877654 3444459999999865
No 172
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.02 E-value=1.3e-05 Score=53.67 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=38.5
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----hhHHHHcCCCCCCeE
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKYGVSGFPTL 100 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~Pt~ 100 (239)
++.|+++|||+|+.+.+.+.++.. .+.+..++.+.+ ..+.+..|..++|++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 578999999999999999887654 345667776543 235566788899996
No 173
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.01 E-value=8.2e-05 Score=67.25 Aligned_cols=99 Identities=17% Similarity=0.322 Sum_probs=78.8
Q ss_pred CcEEcChhhHHHHhc-CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412 24 DVVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 24 ~v~~l~~~~f~~~~~-~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 102 (239)
.-..++++..+.+-. .+..-+-.|+++.||+|......+.+++...+ ++..-.+|....++++++|++.++|++++
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 100 HGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP---NISHTMIDGALFQDEVEALGIQGVPAVFL 176 (515)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEEEEchhCHHHHHhcCCcccCEEEE
Confidence 346677777776653 34445888999999999999999999988854 78888899999999999999999999865
Q ss_pred EeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412 103 FPKGNKDGEEYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 130 (239)
+| + ..+.|..+.+++.+.+.+..
T Consensus 177 --~~-~--~~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 177 --NG-E--EFHNGRMDLAELLEKLEETA 199 (515)
T ss_pred --CC-c--EEEecCCCHHHHHHHHhhcc
Confidence 33 2 34778899999988887653
No 174
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.99 E-value=2.1e-05 Score=53.44 Aligned_cols=75 Identities=25% Similarity=0.328 Sum_probs=52.0
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCC--CCCCeEEEEeCCCcCccccCCCC
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGV--SGFPTLKFFPKGNKDGEEYGGGR 117 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i--~~~Pt~~~~~~g~~~~~~~~g~~ 117 (239)
++.|+.+|||+|.+....+.++...+. .+.+..+|++.. .++...++- .++|+++ -+| + +.|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g-~----~ig-- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDE-K----HVG-- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECC-E----Eec--
Confidence 678999999999999999888765432 466777777632 356666664 6899973 344 2 223
Q ss_pred CHHHHHHHHHHhh
Q 026412 118 DLEDFVSFINEKC 130 (239)
Q Consensus 118 ~~~~l~~~l~~~~ 130 (239)
..+++.+++++..
T Consensus 70 G~~dl~~~~~~~~ 82 (86)
T TIGR02183 70 GCTDFEQLVKENF 82 (86)
T ss_pred CHHHHHHHHHhcc
Confidence 4578888887654
No 175
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.98 E-value=0.0004 Score=50.95 Aligned_cols=106 Identities=17% Similarity=0.273 Sum_probs=74.9
Q ss_pred CcEEcChhhH-HHHhcCCCcEEEEEECCC---ChH-H-hhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC--
Q 026412 24 DVVVLTEDNF-EKEVGQDRGALVEFYAPW---CGH-C-KNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS-- 95 (239)
Q Consensus 24 ~v~~l~~~~f-~~~~~~~k~vlV~F~a~w---C~~-C-~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~-- 95 (239)
.+.+++..++ ++.-.+++ +-|.+.-|. |.. + ......+.++|+.+++++ +.|+.+|.+++..+.+.||+.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~-~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~-i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQ-LCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP-WGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhccCCC-eEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc-EEEEEEeCcccHHHHHHcCCCcc
Confidence 4566666554 44454443 333333443 322 2 356788999999997432 999999999988899999996
Q ss_pred CCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412 96 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 96 ~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
++|+++++...+.....+.|..+.+.+.+|+++.+.
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 499999997754322226799999999999998864
No 176
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.97 E-value=5.5e-05 Score=59.76 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=64.9
Q ss_pred CCCcEEEEEEC-CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412 39 QDRGALVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 89 (239)
Q Consensus 39 ~~k~vlV~F~a-~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 89 (239)
.+++++|.||+ .||++|....+.+.++++++... ++.++.|.+|. ..+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 46789999995 88999999999999999998754 57777776552 12577
Q ss_pred HHcCCC------CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412 90 EKYGVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 129 (239)
Q Consensus 90 ~~~~i~------~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~ 129 (239)
+.||+. .+|+.+++++.+.....+ .-.++.+++++.|...
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 788875 368888888776543322 2346788888877644
No 177
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.95 E-value=0.0002 Score=51.09 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=70.4
Q ss_pred EcChhhHHHHhcCCCcEEEEEE----CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC----CC
Q 026412 27 VLTEDNFEKEVGQDRGALVEFY----APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG----FP 98 (239)
Q Consensus 27 ~l~~~~f~~~~~~~k~vlV~F~----a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~----~P 98 (239)
..+.+|..... ..+.++.|+ ++.-..-..+.+.+.++|+.++. +.+.|+.+|.++.....+.||+.. +|
T Consensus 3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~-gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD-RKLNFAVADKEDFSHELEEFGLDFSGGEKP 79 (111)
T ss_pred eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC-CeEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence 45666666664 333444433 23334456788899999999973 369999999998777889999984 99
Q ss_pred eEEEEeCCCcCccccCCCC-CHHHHHHHHHHh
Q 026412 99 TLKFFPKGNKDGEEYGGGR-DLEDFVSFINEK 129 (239)
Q Consensus 99 t~~~~~~g~~~~~~~~g~~-~~~~l~~~l~~~ 129 (239)
++.++..++ ......+.. +.+.|.+|+++.
T Consensus 80 ~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 80 VVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 999987543 222346677 999999999763
No 178
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.94 E-value=0.00011 Score=60.21 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=58.1
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-------------------------------------
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA------------------------------------- 82 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~------------------------------------- 82 (239)
.+.+++.|+-|.||+|+++++.+..+.+. +++.+..+..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 46789999999999999999887765443 1232222110
Q ss_pred -------------ccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHH
Q 026412 83 -------------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 127 (239)
Q Consensus 83 -------------~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 127 (239)
+++..+++++|++++|++++-+++ ..+....|..++++|.+.+.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~-G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKD-GTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC-CCEEEecCCCCHHHHHHHhC
Confidence 012357788999999998776543 24446789999999988874
No 179
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.94 E-value=3.4e-05 Score=51.78 Aligned_cols=79 Identities=29% Similarity=0.428 Sum_probs=59.0
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC-cCccccCCCCCHHHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN-KDGEEYGGGRDLEDF 122 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~~~~~g~~~~~~l 122 (239)
++.|+.+.|+-|......+..+.... .+.+-.||+++++.+..+|+. .+|.+.+-..++ .......+..+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence 68899999999999998888765543 589999999999999999997 699965543211 113444567899999
Q ss_pred HHHHH
Q 026412 123 VSFIN 127 (239)
Q Consensus 123 ~~~l~ 127 (239)
.+||+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98874
No 180
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.84 E-value=8.8e-05 Score=52.10 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=66.1
Q ss_pred CCCcEEcChhhHHHHhcCCCcEEEEEECCC--ChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~w--C~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 99 (239)
..+...++.++++..+......+++|.... |+.|....=.+-++.+.++ +.+..+-++-+....+..+||+..+|+
T Consensus 8 ~~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~--~~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFP--GRFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp T-TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTST--TSEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred hcCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhh--CccceEEECchhHHHHHHHhCCccCCe
Confidence 457788999999999977666666655432 4555555556777777776 345666667667789999999999999
Q ss_pred EEEEeCCCcCccccCCCCCHH
Q 026412 100 LKFFPKGNKDGEEYGGGRDLE 120 (239)
Q Consensus 100 ~~~~~~g~~~~~~~~g~~~~~ 120 (239)
+++|++| .......|-++-.
T Consensus 86 Lvf~R~g-~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 86 LVFFRDG-RYLGAIEGIRDWA 105 (107)
T ss_dssp EEEEETT-EEEEEEESSSTHH
T ss_pred EEEEECC-EEEEEecCeeccc
Confidence 9999988 4444455555543
No 181
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.83 E-value=0.0001 Score=48.15 Aligned_cols=67 Identities=13% Similarity=0.277 Sum_probs=46.2
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc---CCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY---GVSGFPTLKFFPKGNKDGEEYGGGRDLE 120 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~~g~~~~~~~~g~~~~~ 120 (239)
+..|+.++|++|++....+.+ .++.+-.+|+++++...+.+ |..++|++++ +|. ...|+.+++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~--------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~----~~~~G~~~~ 66 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE--------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD----LSWSGFRPD 66 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC----cEEeccCHH
Confidence 357889999999999887763 15677788888776555555 7778999744 331 134556666
Q ss_pred HHHH
Q 026412 121 DFVS 124 (239)
Q Consensus 121 ~l~~ 124 (239)
.+.+
T Consensus 67 ~~~~ 70 (72)
T TIGR02194 67 KLKA 70 (72)
T ss_pred HHHh
Confidence 6654
No 182
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.82 E-value=7.2e-05 Score=48.16 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=36.5
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeEE
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLK 101 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~ 101 (239)
++.|+++||++|++..+.+.+.. +.+..+|++.+++ +.+..+...+|+++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 57899999999999988887553 4566777775543 34445777889873
No 183
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.81 E-value=8.8e-05 Score=49.45 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=39.5
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc---hhHHHHcCCCCCCeEE
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---KDLAEKYGVSGFPTLK 101 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~Pt~~ 101 (239)
.+.-++.|+.+||++|++....+.+. ++.+-.+|++++ ..+....|...+|+++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~ 62 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF 62 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE
Confidence 44568899999999999998888632 355556776644 3455567888999984
No 184
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.75 E-value=0.00027 Score=64.56 Aligned_cols=93 Identities=12% Similarity=0.140 Sum_probs=77.1
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC-cCccccCCCCC
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN-KDGEEYGGGRD 118 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~~~~~g~~~ 118 (239)
+...++.|+.+.|..|.++...++++++.- +.+.+...|..++.+++++|+++..|++.+++.++ ....+|.|-+.
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s---~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~ 442 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFASLS---EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPS 442 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHhcC---CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCc
Confidence 445677888999999999999999998653 46888888888889999999999999999996443 35589999999
Q ss_pred HHHHHHHHHHhhCCCCC
Q 026412 119 LEDFVSFINEKCGTSRD 135 (239)
Q Consensus 119 ~~~l~~~l~~~~~~~~~ 135 (239)
-++|..||......+..
T Consensus 443 G~Ef~s~i~~i~~~~~~ 459 (555)
T TIGR03143 443 GHELNSFILALYNAAGP 459 (555)
T ss_pred cHhHHHHHHHHHHhcCC
Confidence 99999999888765543
No 185
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.70 E-value=0.0001 Score=48.99 Aligned_cols=49 Identities=16% Similarity=0.385 Sum_probs=34.9
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhH----HHHcCCCCCCeE
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL----AEKYGVSGFPTL 100 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~ 100 (239)
++.|+.+|||+|.+....+.+. ++.+-.+|++.+++. .+..+..++|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI 53 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence 4678899999999998888743 344556666655433 344577789997
No 186
>PHA03050 glutaredoxin; Provisional
Probab=97.69 E-value=0.00018 Score=51.00 Aligned_cols=62 Identities=11% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cc----hhHHHHcCCCCCCeE
Q 026412 34 EKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KY----KDLAEKYGVSGFPTL 100 (239)
Q Consensus 34 ~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~----~~l~~~~~i~~~Pt~ 100 (239)
++.+.+++ ++.|..+|||+|++....+.+..-.. ..+....+|-. .. ..+.+..|.+.+|++
T Consensus 7 ~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I 73 (108)
T PHA03050 7 QQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI 73 (108)
T ss_pred HHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence 34444443 78899999999999988877654322 13444444421 12 245555678889997
No 187
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.64 E-value=0.00015 Score=50.61 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=34.6
Q ss_pred EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-------hHHHHcCCCCCCeEEEEeCC
Q 026412 43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------DLAEKYGVSGFPTLKFFPKG 106 (239)
Q Consensus 43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~Pt~~~~~~g 106 (239)
-++.|..||||+|++....+.+.. +.+..+|++..+ .+.+..|...+|.+ |-+|
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g 69 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLG--------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGG 69 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC--------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECC
Confidence 377899999999999987666442 333445554332 23333467789996 4444
No 188
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.61 E-value=0.00031 Score=45.98 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=35.7
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH----HHcCCC-CCCeEE
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA----EKYGVS-GFPTLK 101 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~Pt~~ 101 (239)
++.|+.+||++|.+....+.+. ++.+-.+|++.+++.. +..+.. ++|+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 5788999999999998877652 3566677777654433 345766 899863
No 189
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.61 E-value=0.00069 Score=45.36 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=50.3
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH---HHcCCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA---EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE 120 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~ 120 (239)
++.|+.+||++|.+....+.+ .++.+-.+|++++++.. ...|...+|++++ ++ . ..++.+++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~--------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-~----~~~Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES--------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-L----SWSGFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-E----EEecCCHH
Confidence 568899999999998877743 25778888888766533 3446678999854 33 1 23456888
Q ss_pred HHHHHHHHh
Q 026412 121 DFVSFINEK 129 (239)
Q Consensus 121 ~l~~~l~~~ 129 (239)
.+.+++...
T Consensus 68 ~l~~~~~~~ 76 (81)
T PRK10329 68 MINRLHPAP 76 (81)
T ss_pred HHHHHHHhh
Confidence 888887654
No 190
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.60 E-value=0.00024 Score=48.46 Aligned_cols=59 Identities=32% Similarity=0.417 Sum_probs=42.8
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC--cc------------------------------chhHHHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA--DK------------------------------YKDLAEK 91 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~--~~------------------------------~~~l~~~ 91 (239)
++.|+.+.||+|..+.+.+.++..... +++.+..+.+ .. +...+.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD--GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC--CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 468999999999999999999875544 3454544432 22 1245678
Q ss_pred cCCCCCCeEEEEe
Q 026412 92 YGVSGFPTLKFFP 104 (239)
Q Consensus 92 ~~i~~~Pt~~~~~ 104 (239)
+|+.++|++++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999987764
No 191
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.57 E-value=0.001 Score=48.00 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=62.3
Q ss_pred ChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE-EEeC
Q 026412 29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK-FFPK 105 (239)
Q Consensus 29 ~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~-~~~~ 105 (239)
+....++++ ...+.+++-|..+|-+.|.++...+.++++... +-..++-||+++-+++.+-|.+. -|..+ +|-+
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~--~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~r 83 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK--NFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFR 83 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTTHCCHHHTTS--SSEEEEEEET
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh--cceEEEEEEcccchhhhcccccC-CCeEEEEEec
Confidence 345677777 678999999999999999999999999999876 34778889999999999999998 77654 4435
Q ss_pred CCcCcccc
Q 026412 106 GNKDGEEY 113 (239)
Q Consensus 106 g~~~~~~~ 113 (239)
+.-....+
T Consensus 84 nkhm~vD~ 91 (133)
T PF02966_consen 84 NKHMMVDF 91 (133)
T ss_dssp TEEEEEES
T ss_pred CeEEEEEe
Confidence 43333333
No 192
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.55 E-value=0.00055 Score=52.64 Aligned_cols=32 Identities=25% Similarity=0.585 Sum_probs=29.3
Q ss_pred CCCcEEEEEECCCChHHhhHhHHHHHHHHHcc
Q 026412 39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT 70 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~ 70 (239)
..++.++.|+.+.||||+.+++.+..+.++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~ 45 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP 45 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence 67889999999999999999999999988874
No 193
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.52 E-value=0.00049 Score=44.96 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=36.7
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCCCCCeE
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTL 100 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~ 100 (239)
++.|+.+||++|++....+++. ++.+..+|++.++ ++.+..+-..+|++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 6789999999999998777742 4667777887654 35555577789987
No 194
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.50 E-value=0.00019 Score=55.46 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=58.9
Q ss_pred hHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCC-CCHHHHHHHHHHhhCCCC
Q 026412 57 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFVSFINEKCGTSR 134 (239)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~-~~~~~l~~~l~~~~~~~~ 134 (239)
.....|.++|+.+. +.+.|+.+. +.++++++++.. |++++|+++.+....|.|. .+.+.|.+||....-+..
T Consensus 7 ~~~~~f~~~A~~~~--~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 7 ELFEIFEEAAEKLK--GDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLV 79 (184)
T ss_dssp HHHHHHHHHHHHHT--TTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSC
T ss_pred HHHHHHHHHHHhCc--CCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccc
Confidence 44567889999986 358888775 567899999998 9999999976778899998 899999999998865543
No 195
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.47 E-value=0.0016 Score=44.65 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=72.6
Q ss_pred cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--chhHHHHcCCC----CCCeEE
Q 026412 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVS----GFPTLK 101 (239)
Q Consensus 28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~Pt~~ 101 (239)
-+...|.+++.....|+|.|..+--..-.. ...+.++|+...+ .=.++.|||.+ ...||+++.+. .-|..+
T Consensus 7 ~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~-Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L 83 (112)
T cd03067 7 SDHKDFKKLLRTRNNVLVLYSKSAKSAEAL-LKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL 83 (112)
T ss_pred cchHHHHHHHhhcCcEEEEEecchhhHHHH-HHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence 345789999988889999998766443333 4477888888763 45678899985 78999999998 555543
Q ss_pred -EEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412 102 -FFPKGNKDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 102 -~~~~g~~~~~~~~g~~~~~~l~~~l~~ 128 (239)
-|++| .-...|.-..+...++.|+++
T Consensus 84 kHYKdG-~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 84 KHYKDG-DFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hcccCC-CccccccchhhHHHHHHHhhC
Confidence 45555 666788888999999999864
No 196
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.39 E-value=0.0014 Score=45.85 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=61.6
Q ss_pred ChhhHHHHhcC--CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCC-CCCeEE
Q 026412 29 TEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVS-GFPTLK 101 (239)
Q Consensus 29 ~~~~f~~~~~~--~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~-~~Pt~~ 101 (239)
+.+++++++.. .++++++=.++.||-.......|++....... .+.++.+|+-+++ .++++|||. .-|.++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 56788998844 78888888999999999999999999888652 3888899887554 678899998 489999
Q ss_pred EEeCCCcCccccCCCCCHHHH
Q 026412 102 FFPKGNKDGEEYGGGRDLEDF 122 (239)
Q Consensus 102 ~~~~g~~~~~~~~g~~~~~~l 122 (239)
++++|......-.+..+.+.+
T Consensus 84 li~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEETTEEEEEEEGGG-SHHHH
T ss_pred EEECCEEEEECccccCCHHhc
Confidence 999983222222334555543
No 197
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.38 E-value=0.00076 Score=43.90 Aligned_cols=66 Identities=18% Similarity=0.351 Sum_probs=43.3
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch---hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE 120 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~ 120 (239)
++.|..+|||+|.+....+.+. ++.+..+|++.+. .+....|...+|.+ |-+| + +.| ..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g-~----~ig--g~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDG-E----LIG--GSD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECC-E----EEe--CHH
Confidence 6789999999999998777642 3556666766443 23344588899997 4444 2 123 356
Q ss_pred HHHHHH
Q 026412 121 DFVSFI 126 (239)
Q Consensus 121 ~l~~~l 126 (239)
++.+|+
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 666665
No 198
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00067 Score=45.30 Aligned_cols=51 Identities=18% Similarity=0.389 Sum_probs=35.5
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-----hHHHHc-CCCCCCeEEE
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----DLAEKY-GVSGFPTLKF 102 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~Pt~~~ 102 (239)
++.|..+|||+|++....+.+ .++.+..++++.+. +..++- |.+.+|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~--------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR--------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH--------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 677889999999998777762 24666666665443 334444 7889999744
No 199
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.28 E-value=0.0018 Score=44.92 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHHHhcCCCcEEEEEE----CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeEE
Q 026412 33 FEKEVGQDRGALVEFY----APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLK 101 (239)
Q Consensus 33 f~~~~~~~k~vlV~F~----a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~ 101 (239)
.++.+.+ .+++|+-. +||||+|++....+.+. ++.+..+|++++++ +.+..|...+|.++
T Consensus 5 v~~~i~~-~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 5 IKEQIKE-NPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred HHHHhcc-CCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 3445544 34544443 39999999998777653 24466777765543 33455677899873
No 200
>PRK10638 glutaredoxin 3; Provisional
Probab=97.20 E-value=0.0014 Score=43.96 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=35.4
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCCCCCeEE
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLK 101 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~ 101 (239)
++.|..+||++|++....+++. ++.+..+|++.++ ++.+..+...+|+++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~ 57 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF 57 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 5678899999999998777743 3455667776554 344555777899873
No 201
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0057 Score=55.82 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=67.6
Q ss_pred CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccchhHHHHcC-----
Q 026412 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEKYG----- 93 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~----- 93 (239)
+-.+..-.++.|.+....+||+++-...+||.+|.-|..+- .++|+.+. .+++-++||.++-|++-+.|.
T Consensus 25 PV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN--~~FV~IKVDREERPDvD~~Ym~~~q~ 102 (667)
T COG1331 25 PVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN--ENFVPVKVDREERPDVDSLYMNASQA 102 (667)
T ss_pred CccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHH--hCceeeeEChhhccCHHHHHHHHHHH
Confidence 34566788999999999999999999999999999997542 44566553 478999999998887777664
Q ss_pred ---CCCCCeEEEEeCCCc
Q 026412 94 ---VSGFPTLKFFPKGNK 108 (239)
Q Consensus 94 ---i~~~Pt~~~~~~g~~ 108 (239)
--|+|-.+|..++++
T Consensus 103 ~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred hccCCCCceeEEECCCCc
Confidence 447999988877654
No 202
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.09 E-value=0.002 Score=49.86 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=21.9
Q ss_pred EEECCCChHHhhHhHHHHHHHHHccCC
Q 026412 46 EFYAPWCGHCKNLAPTYEKVAAAFTLE 72 (239)
Q Consensus 46 ~F~a~wC~~C~~~~~~~~~~a~~~~~~ 72 (239)
.|..|+|++|-...|.+.++...++..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 589999999999999999999998743
No 203
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.08 E-value=0.0066 Score=47.02 Aligned_cols=101 Identities=23% Similarity=0.364 Sum_probs=76.2
Q ss_pred CCcEEcChhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412 23 DDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99 (239)
Q Consensus 23 ~~v~~l~~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 99 (239)
..|..++...|.+.+ ..+-+|+|..|...-+.|.-+...++.++..|+ .+.|+++-.+... ..|.=...||
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp---~iKFVki~at~cI---pNYPe~nlPT 164 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP---QIKFVKIPATTCI---PNYPESNLPT 164 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC---cceEEeccccccc---CCCcccCCCe
Confidence 568889999998887 446679999999999999999999999999997 7888888665432 2344557999
Q ss_pred EEEEeCCCcC-----ccccCCC-CCHHHHHHHHHHh
Q 026412 100 LKFFPKGNKD-----GEEYGGG-RDLEDFVSFINEK 129 (239)
Q Consensus 100 ~~~~~~g~~~-----~~~~~g~-~~~~~l~~~l~~~ 129 (239)
+++|..|.-. +..+.|. .+.+++..++-+.
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 9999888411 1233443 5778887777653
No 204
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.03 E-value=0.027 Score=39.26 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=65.4
Q ss_pred ChhhHHHHhc-CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412 29 TEDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 107 (239)
Q Consensus 29 ~~~~f~~~~~-~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 107 (239)
+.+..++++. .+..++|-|+..--+ .....|.++|..+. +++.|+.. .+.++...+++. .|.++++++..
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R--~d~~F~~~---~~~~~~~~~~~~-~~~i~l~~~~~ 77 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFH--PYIKFFAT---FDSKVAKKLGLK-MNEVDFYEPFM 77 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhh--cCCEEEEE---CcHHHHHHcCCC-CCcEEEeCCCC
Confidence 4566888887 777777766665433 34567888998875 35666543 345677888775 79999997643
Q ss_pred cCcccc-CCCCCHHHHHHHHHHh
Q 026412 108 KDGEEY-GGGRDLEDFVSFINEK 129 (239)
Q Consensus 108 ~~~~~~-~g~~~~~~l~~~l~~~ 129 (239)
.....| .|..+.+.|.+||...
T Consensus 78 e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 78 EEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCcccCCCCCCHHHHHHHHHHh
Confidence 455678 7788999999999753
No 205
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.01 E-value=0.0034 Score=42.85 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=35.9
Q ss_pred HHhcCCCcEEEEEEC----CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeE
Q 026412 35 KEVGQDRGALVEFYA----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTL 100 (239)
Q Consensus 35 ~~~~~~k~vlV~F~a----~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~ 100 (239)
+.+++ .+++|+-.. |||++|++....+.+.. +.+..+|++.+++ +.+..|-..+|.+
T Consensus 3 ~~i~~-~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v 67 (90)
T cd03028 3 KLIKE-NPVVLFMKGTPEEPRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL 67 (90)
T ss_pred hhhcc-CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence 34433 345544332 79999999987776542 4466666655443 4445577789997
No 206
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.84 E-value=0.03 Score=39.22 Aligned_cols=91 Identities=26% Similarity=0.374 Sum_probs=63.4
Q ss_pred ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeC---
Q 026412 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK--- 105 (239)
Q Consensus 29 ~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~--- 105 (239)
+.++.++.+...+.++|-|+..--+ .....|.++|..+. +++.|+.. .+..+...+++ .|++++|++
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R--~d~~F~~~---~~~~~~~~~~~--~~~ivl~~p~~~ 76 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLR--ESFRFAHT---SDKQLLEKYGY--GEGVVLFRPPRL 76 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhh--hcCEEEEE---ChHHHHHhcCC--CCceEEEechhh
Confidence 4566777777777777777665433 45677888888875 35677553 33567788888 688888843
Q ss_pred ---CCcCccccCCCCCHHHHHHHHHHh
Q 026412 106 ---GNKDGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 106 ---g~~~~~~~~g~~~~~~l~~~l~~~ 129 (239)
-......|.|..+.+.|.+||...
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 213345689988999999999753
No 207
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.82 E-value=0.00065 Score=56.02 Aligned_cols=87 Identities=21% Similarity=0.461 Sum_probs=71.2
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-ccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCC
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~ 118 (239)
..++-..||+.|||..+..+|.+.-....+. .+....++- ..-++...+|++.+.|++.+... ..+.+|.|.++
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~---~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~--t~~~~~~~~r~ 150 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFS---SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ--TCPASYRGERD 150 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhcc---ccccccHHHHhhcccchhccccccCCcceeecc--ccchhhccccc
Confidence 6679999999999999999999998887775 333333321 24467889999999999988865 47889999999
Q ss_pred HHHHHHHHHHhhC
Q 026412 119 LEDFVSFINEKCG 131 (239)
Q Consensus 119 ~~~l~~~l~~~~~ 131 (239)
...++.|..+.++
T Consensus 151 l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 151 LASLVNFYTEITP 163 (319)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999999886
No 208
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.73 E-value=0.0082 Score=47.01 Aligned_cols=101 Identities=21% Similarity=0.325 Sum_probs=76.9
Q ss_pred CcEEc-ChhhHHHHhc---CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412 24 DVVVL-TEDNFEKEVG---QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99 (239)
Q Consensus 24 ~v~~l-~~~~f~~~~~---~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 99 (239)
.|.++ +.+.|-..++ +...++|..|-+.-+.|..+...+.-+|..++ .+.|+++-.. +-....+|..+++|+
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss-~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSS-NTGASDRFSLNVLPT 214 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeec-cccchhhhcccCCce
Confidence 45554 5678988883 34568899999999999999999999999997 6889888765 335578999999999
Q ss_pred EEEEeCCCcCcccc-------CCCCCHHHHHHHHHHh
Q 026412 100 LKFFPKGNKDGEEY-------GGGRDLEDFVSFINEK 129 (239)
Q Consensus 100 ~~~~~~g~~~~~~~-------~g~~~~~~l~~~l~~~ 129 (239)
+.+|++| +.+..| .......++..|++..
T Consensus 215 LliYkgG-eLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 215 LLIYKGG-ELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EEEeeCC-chhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999887 332222 2235667777888764
No 209
>PRK10824 glutaredoxin-4; Provisional
Probab=96.58 E-value=0.01 Score=42.48 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=33.8
Q ss_pred HHHHhcCCCcEEEEEEC----CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhH----HHHcCCCCCCeE
Q 026412 33 FEKEVGQDRGALVEFYA----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL----AEKYGVSGFPTL 100 (239)
Q Consensus 33 f~~~~~~~k~vlV~F~a----~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~ 100 (239)
.++.+.+ .+|+|+--. ||||+|++....+.+.. +.+..+|+++++++ .+.-|.+.+|.+
T Consensus 8 v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI 74 (115)
T PRK10824 8 IQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQL 74 (115)
T ss_pred HHHHHhc-CCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 3444544 444444333 69999999988777653 22334455544433 333456678875
No 210
>PTZ00062 glutaredoxin; Provisional
Probab=96.39 E-value=0.015 Score=46.04 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=36.6
Q ss_pred HHHHhcCCCcEEEEEE----CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH----HHcCCCCCCeEE
Q 026412 33 FEKEVGQDRGALVEFY----APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA----EKYGVSGFPTLK 101 (239)
Q Consensus 33 f~~~~~~~k~vlV~F~----a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~Pt~~ 101 (239)
.++++++ .+++|+-- .||||+|++....+.+. ++.+..+|++++++.. +..|...+|.++
T Consensus 106 v~~li~~-~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 106 IERLIRN-HKILLFMKGSKTFPFCRFSNAVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred HHHHHhc-CCEEEEEccCCCCCCChhHHHHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE
Confidence 3444444 44444433 37999999987777643 3556677877555433 334566788864
No 211
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.37 E-value=0.0089 Score=52.53 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=36.5
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh---HHHH---------cCCCCCCeEEE
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD---LAEK---------YGVSGFPTLKF 102 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~---l~~~---------~~i~~~Pt~~~ 102 (239)
++.|+.||||+|++....+.+. ++.+..+|+++.+. +.++ .|.+++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 7789999999999987766653 46677788875553 2222 36778999855
No 212
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.22 E-value=0.053 Score=43.54 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=47.2
Q ss_pred CCCcEEcChhhHHHH---hcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEE
Q 026412 22 ADDVVVLTEDNFEKE---VGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~---~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~v 80 (239)
.+.++.+++.+...+ ...++|++++|.+-.||+-..-.+.+.+++++|.+.-++.++.|
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 456888888774333 47899999999999999999999999999999975445555544
No 213
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.032 Score=39.13 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=39.0
Q ss_pred HHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-hHHHH----cCCCCCCeEEE
Q 026412 33 FEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-DLAEK----YGVSGFPTLKF 102 (239)
Q Consensus 33 f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-~l~~~----~~i~~~Pt~~~ 102 (239)
+..++.+ .-+|.|..+||+.|.++...|.. +. ....++.+|-+.+. ++-+. -+-+.+|.+++
T Consensus 7 v~~~i~~--~~VVifSKs~C~~c~~~k~ll~~----~~--v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 7 VRKMISE--NPVVIFSKSSCPYCHRAKELLSD----LG--VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHhhc--CCEEEEECCcCchHHHHHHHHHh----CC--CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 4444533 34667899999999998777776 32 35667788766432 33332 24557888643
No 214
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.12 Score=39.08 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=58.9
Q ss_pred cCCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHHHcCCC
Q 026412 38 GQDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVS 95 (239)
Q Consensus 38 ~~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~ 95 (239)
-.+++||++|| ..|+|-|-...-.|+....++... +..+..|..|. +..+++.||+.
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~ 106 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVW 106 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcc
Confidence 45678999998 688999999999999988888754 56666676542 34667777763
Q ss_pred C------------CCeEEEEeCCCcCccccCC---CCCHHHHHHHHHH
Q 026412 96 G------------FPTLKFFPKGNKDGEEYGG---GRDLEDFVSFINE 128 (239)
Q Consensus 96 ~------------~Pt~~~~~~g~~~~~~~~g---~~~~~~l~~~l~~ 128 (239)
. .++.++++.+|.....+.. ...++++.+++.+
T Consensus 107 ~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 107 GEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKK 154 (157)
T ss_pred cccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHH
Confidence 2 3555666665554433322 2345566666554
No 215
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=95.55 E-value=0.19 Score=34.52 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=52.1
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 119 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 119 (239)
+...++.|..+. +.|..+...++++++.-. .+.+-..+.+. ..|++.+..+|.....+|.|-+.-
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~G 83 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMG 83 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCc
Confidence 444555666655 899999998988888743 45443322211 479999887764456899999999
Q ss_pred HHHHHHHHH
Q 026412 120 EDFVSFINE 128 (239)
Q Consensus 120 ~~l~~~l~~ 128 (239)
++|..||..
T Consensus 84 hEf~Slila 92 (94)
T cd02974 84 HEFTSLVLA 92 (94)
T ss_pred hhHHHHHHH
Confidence 999998864
No 216
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.30 E-value=0.052 Score=40.98 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=38.5
Q ss_pred CCcEEEE-EECCCChHHhhH-hHHHHHHHHHccCCCCe-EEEEEeCc---cchhHHHHcCC
Q 026412 40 DRGALVE-FYAPWCGHCKNL-APTYEKVAAAFTLEDDV-VVANLDAD---KYKDLAEKYGV 94 (239)
Q Consensus 40 ~k~vlV~-F~a~wC~~C~~~-~~~~~~~a~~~~~~~~v-~~~~vd~~---~~~~l~~~~~i 94 (239)
++++++. |.+.||+.|... .+.|.+..+++... ++ .++.|..| .+...++++++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECCCHHHHHHHHHhhCC
Confidence 3444444 558999999998 99999999988754 34 46677666 34456667766
No 217
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.2 Score=40.63 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=22.0
Q ss_pred CcEEEEEECCCChHHhhHhHHHHHHHHH
Q 026412 41 RGALVEFYAPWCGHCKNLAPTYEKVAAA 68 (239)
Q Consensus 41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~ 68 (239)
+..++.|....||+|++..|.+.+....
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~ 112 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYID 112 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhh
Confidence 6788889999999998888777774443
No 218
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=94.82 E-value=0.39 Score=37.11 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=24.6
Q ss_pred EEEEEECCCChHHhhHhHHHHHHHHHc
Q 026412 43 ALVEFYAPWCGHCKNLAPTYEKVAAAF 69 (239)
Q Consensus 43 vlV~F~a~wC~~C~~~~~~~~~~a~~~ 69 (239)
.+..|+.+-||+|-...+.+.++.+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~ 27 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEY 27 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 367899999999999999999999988
No 219
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.54 E-value=0.21 Score=45.30 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=59.5
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 119 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 119 (239)
.++|-+.++.+.|+.|.++...++++++.-. .+.+-..+.+ ...|++.+..+|.....+|.|-+.-
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~---~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g 83 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLSD---KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMG 83 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCcc
Confidence 4455555555589999999999999988753 4554332211 3489998887665566899999999
Q ss_pred HHHHHHHHHhhCCCCCC
Q 026412 120 EDFVSFINEKCGTSRDG 136 (239)
Q Consensus 120 ~~l~~~l~~~~~~~~~~ 136 (239)
++|..||......+...
T Consensus 84 ~Ef~s~i~~i~~~~~~~ 100 (517)
T PRK15317 84 HEFTSLVLALLQVGGHP 100 (517)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999998876654443
No 220
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.31 E-value=0.25 Score=32.11 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=42.3
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 123 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~ 123 (239)
+..|+.++|++|++.+-.+....-. +....+|.....++ ..-+...+|++..-..|+.. . -.....+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~------y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~-~----l~eS~~I~ 69 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP------YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQ-Q----LVDSSVII 69 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc------eEEEECCchhHHHH-HHhCCCccCEEEECCCCCcc-E----EEcHHHHH
Confidence 4568889999999987555433221 23333443222333 33345579987543221111 1 23677888
Q ss_pred HHHHHhhC
Q 026412 124 SFINEKCG 131 (239)
Q Consensus 124 ~~l~~~~~ 131 (239)
+||.+.+|
T Consensus 70 ~yL~~~~~ 77 (77)
T cd03040 70 STLKTYLG 77 (77)
T ss_pred HHHHHHcC
Confidence 88887654
No 221
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.14 E-value=0.21 Score=37.35 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=33.9
Q ss_pred EEEEECC------CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCC----CCCCeEE
Q 026412 44 LVEFYAP------WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGV----SGFPTLK 101 (239)
Q Consensus 44 lV~F~a~------wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i----~~~Pt~~ 101 (239)
+|.|+++ +|++|++....|+.. .+.+-.+|++.++ ++.+.++- ..+|.++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF 65 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF 65 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE
Confidence 4566677 899999988777643 3667778887554 34444454 5688864
No 222
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.13 E-value=1.1 Score=32.99 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=53.8
Q ss_pred cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC----CCCeEEEEeCCCcCccccCCCC
Q 026412 42 GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS----GFPTLKFFPKGNKDGEEYGGGR 117 (239)
Q Consensus 42 ~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----~~Pt~~~~~~g~~~~~~~~g~~ 117 (239)
.-++.+++|.|+=|..-...++ . ..+.+-.+..++...+-++++|. +=-|.+ + +| ....|..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk----~----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V-I-~G----y~vEGHV 91 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK----A----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAV-I-NG----YYVEGHV 91 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH----h----CCcEEEEeecCcHHHHHHhcCCChhhccccEEE-E-cC----EEEeccC
Confidence 4578899999999988655544 2 25777777777777888889886 233332 2 33 3457899
Q ss_pred CHHHHHHHHHHhh
Q 026412 118 DLEDFVSFINEKC 130 (239)
Q Consensus 118 ~~~~l~~~l~~~~ 130 (239)
..+++..++++.-
T Consensus 92 Pa~aI~~ll~~~p 104 (149)
T COG3019 92 PAEAIARLLAEKP 104 (149)
T ss_pred CHHHHHHHHhCCC
Confidence 9999999998754
No 223
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.72 E-value=0.44 Score=43.25 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=59.1
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 119 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 119 (239)
.++|-+.++.+.|+.|.++...++++++.-. .+.+...+.+ ....|++.+..+|.....+|.|-+.-
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~---ki~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~g 84 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLSD---KISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPGG 84 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhCC---CeEEEEecCC----------cCCCCeEEEecCCcccceEEEecCCc
Confidence 3455444444479999999999999988743 4555333322 13569998886665566899999999
Q ss_pred HHHHHHHHHhhCCCCCC
Q 026412 120 EDFVSFINEKCGTSRDG 136 (239)
Q Consensus 120 ~~l~~~l~~~~~~~~~~ 136 (239)
++|..||......+...
T Consensus 85 ~Ef~s~i~~i~~~~~~~ 101 (515)
T TIGR03140 85 HEFTSLVLAILQVGGHG 101 (515)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999998877655443
No 224
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=93.34 E-value=1.9 Score=30.17 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=74.3
Q ss_pred EcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH----HHcCCC-CCCe
Q 026412 27 VLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA----EKYGVS-GFPT 99 (239)
Q Consensus 27 ~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~Pt 99 (239)
.+...++-+.= .-....+|.|--+--+.-.++.+.+.++|+.+..++++.++-||-|+-+-+. +-|+|. .-|.
T Consensus 5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq 84 (120)
T cd03074 5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ 84 (120)
T ss_pred hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence 34455544443 3346788888889999999999999999999998899999999999766443 345666 4698
Q ss_pred EEEEeCCCcCcc--ccCC---CCCHHHHHHHHHHh
Q 026412 100 LKFFPKGNKDGE--EYGG---GRDLEDFVSFINEK 129 (239)
Q Consensus 100 ~~~~~~g~~~~~--~~~g---~~~~~~l~~~l~~~ 129 (239)
+-+..-.....+ ...+ ..+++++..||...
T Consensus 85 IGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 85 IGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred eeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 888764433222 2222 37899999999763
No 225
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.92 E-value=0.16 Score=35.48 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=43.7
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCCCeEEEEeCCCcCcccc----CC
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFPKGNKDGEEY----GG 115 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~----~g 115 (239)
+..|+.|+|+.|++....+++. ++.+-.+|+.++ .++.+-.+-.+.+.--++...+...... ..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~ 72 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKD 72 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcccc
Confidence 3578899999999987666542 344556665432 2333333333333333444332211111 23
Q ss_pred CCCHHHHHHHHHHhh
Q 026412 116 GRDLEDFVSFINEKC 130 (239)
Q Consensus 116 ~~~~~~l~~~l~~~~ 130 (239)
..+.+++.++|.+.-
T Consensus 73 ~ls~~e~~~~l~~~p 87 (105)
T cd02977 73 ELSDEEALELMAEHP 87 (105)
T ss_pred CCCHHHHHHHHHhCc
Confidence 567888888887653
No 226
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=92.69 E-value=2.5 Score=29.66 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=57.7
Q ss_pred ChhhHHHHhcCC-CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC-
Q 026412 29 TEDNFEKEVGQD-RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG- 106 (239)
Q Consensus 29 ~~~~f~~~~~~~-k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g- 106 (239)
+.++.+..+... +.++|-|+..--+ .....+.++|..+. +++.|+... +..+..++++. .|.+++|++.
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~R--dd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLR--EDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcc--cCCEEEEEC---hHHHHHhcCCC-CCceEEECcHH
Confidence 456677777554 6666666655433 35667888998875 356775433 34677888886 5777777433
Q ss_pred -----CcCccccCCC-CCHHH-HHHHHHH
Q 026412 107 -----NKDGEEYGGG-RDLED-FVSFINE 128 (239)
Q Consensus 107 -----~~~~~~~~g~-~~~~~-l~~~l~~ 128 (239)
......|.|. .+.++ |.+||+.
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 1224566766 45555 9999874
No 227
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=92.33 E-value=0.4 Score=30.64 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=32.3
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-chhHHHHcCCCCCCeEE
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~Pt~~ 101 (239)
+.|+.+||++|.+..-.+....- .+.+..+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 46788999999998655553322 34555666543 34555555666799974
No 228
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=92.10 E-value=1.3 Score=38.49 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=65.7
Q ss_pred cCCCcEEEEEECCCChHHhhHh--HHHHHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCCCCeEEEEeCCCcCcccc
Q 026412 38 GQDRGALVEFYAPWCGHCKNLA--PTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGNKDGEEY 113 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~--~~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~ 113 (239)
..++.+||.|-+........|. -.+.......- ...++-++|+.. ....++.-|.+-.+|+++++...|......
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l-s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL-SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh-hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEe
Confidence 5677888888888877777776 33444333322 235777777765 345677888999999999998877888888
Q ss_pred CCCCCHHHHHHHHHH
Q 026412 114 GGGRDLEDFVSFINE 128 (239)
Q Consensus 114 ~g~~~~~~l~~~l~~ 128 (239)
.|..++++|..-|.+
T Consensus 95 tg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 95 TGFVTADELASSIEK 109 (506)
T ss_pred eccccHHHHHHHHHH
Confidence 999999888876654
No 229
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=91.77 E-value=5.4 Score=31.54 Aligned_cols=93 Identities=17% Similarity=0.130 Sum_probs=57.0
Q ss_pred CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc-CCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412 51 WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 51 wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~-~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 129 (239)
.|+.|+++.-.+. .. ...+.+..||...-++-.... .-...|. +.|++ .+..+.+.+.++|.+.
T Consensus 20 dcpf~qr~~m~L~---~k---~~~f~vttVd~~~kp~~f~~~sp~~~~P~-l~~d~--------~~~tDs~~Ie~~Lee~ 84 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LK---GVPFKVTTVDLSRKPEWFLDISPGGKPPV-LKFDE--------KWVTDSDKIEEFLEEK 84 (221)
T ss_pred CChhHHHHHHHHH---Hc---CCCceEEEeecCCCcHHHHhhCCCCCCCe-EEeCC--------ceeccHHHHHHHHHHh
Confidence 3999998866655 22 125778888988665544443 3334454 44432 2345788999999999
Q ss_pred hCCCCCCCCCcccccchhhhhhHHHHHHH
Q 026412 130 CGTSRDGKGQLTSTAGIVASLDALVKEFV 158 (239)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 158 (239)
+++.+-........+.....+-.....|+
T Consensus 85 l~~p~~~~~~~~E~asag~diF~kF~~fi 113 (221)
T KOG1422|consen 85 LPPPKLPTLAPPESASAGSDIFAKFSAFI 113 (221)
T ss_pred cCCCCCcccCCHHHHhhHHHHHHHHHHHH
Confidence 88777665544444444444445555664
No 230
>PHA03075 glutaredoxin-like protein; Provisional
Probab=91.52 E-value=0.34 Score=34.27 Aligned_cols=30 Identities=17% Similarity=0.584 Sum_probs=26.1
Q ss_pred CcEEEEEECCCChHHhhHhHHHHHHHHHcc
Q 026412 41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFT 70 (239)
Q Consensus 41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~ 70 (239)
|.+++.|..|.|+-|+-....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 578999999999999999999987777663
No 231
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=91.29 E-value=1 Score=29.25 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=48.2
Q ss_pred EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412 43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103 (239)
Q Consensus 43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 103 (239)
.+..|-+..-+..++....+.++-+.+. .+.+.+--||+.+++++++.++|-.+||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 3455556666888888888888888775 56788888999999999999999999997543
No 232
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=89.66 E-value=1.1 Score=29.14 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=38.8
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 119 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 119 (239)
+..++.++|++|.+..-.+.+.. +.+-.++++.. +++.+.-+-..+|++.. .+|+. . -...
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g--------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~--~----l~es 66 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE--------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGV--Q----MFES 66 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC--------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCe--E----EEcH
Confidence 34677789999999865555432 22323344322 23433334457898743 22221 1 2356
Q ss_pred HHHHHHHHHh
Q 026412 120 EDFVSFINEK 129 (239)
Q Consensus 120 ~~l~~~l~~~ 129 (239)
..+.+|+.+.
T Consensus 67 ~~I~~yL~~~ 76 (77)
T cd03041 67 ADIVKYLFKT 76 (77)
T ss_pred HHHHHHHHHh
Confidence 7788887653
No 233
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=89.29 E-value=0.84 Score=35.11 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=39.8
Q ss_pred cEEcChhhHHHHhcCCCcEEEEEECCCC-hHHhhHhHHHHHHHHHccCC-CCeEEEEEeCc
Q 026412 25 VVVLTEDNFEKEVGQDRGALVEFYAPWC-GHCKNLAPTYEKVAAAFTLE-DDVVVANLDAD 83 (239)
Q Consensus 25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC-~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~ 83 (239)
+.+.++..|...--.+|+++|.|.=+.| ..|-.....+.++.+.+..+ .++.++.|.+|
T Consensus 37 L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 37 LTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp EEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred EEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 3444455555433468999999988888 67888888888887776543 35767666665
No 234
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=88.95 E-value=1.7 Score=31.81 Aligned_cols=22 Identities=9% Similarity=0.347 Sum_probs=20.0
Q ss_pred chhHHHHcCCCCCCeEEEEeCC
Q 026412 85 YKDLAEKYGVSGFPTLKFFPKG 106 (239)
Q Consensus 85 ~~~l~~~~~i~~~Pt~~~~~~g 106 (239)
+|.+.++|+|+.+|++++.+++
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCC
Confidence 5899999999999999998776
No 235
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=88.82 E-value=6.9 Score=28.00 Aligned_cols=90 Identities=12% Similarity=0.043 Sum_probs=54.7
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-ccc-----------hhHHHHcCCCC-CCeEEEEe
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-DKY-----------KDLAEKYGVSG-FPTLKFFP 104 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-~~~-----------~~l~~~~~i~~-~Pt~~~~~ 104 (239)
.++++++|.--++.-+.-+.....+.+-...+.. .++.+..+-- ... ..+.++|++.. .-++++..
T Consensus 8 w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~e-Rdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiG 86 (118)
T PF13778_consen 8 WKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDE-RDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIG 86 (118)
T ss_pred CcCceEEEECCCCCCHHHHHHHHHHHhhhhcccc-CceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEe
Confidence 3444444433345566666667777765555553 3566655522 222 27888998652 23444554
Q ss_pred CCCcCccccCCCCCHHHHHHHHHH
Q 026412 105 KGNKDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 105 ~g~~~~~~~~g~~~~~~l~~~l~~ 128 (239)
++|....++.++.+.+++-..|..
T Consensus 87 KDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 87 KDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred CCCcEEEecCCCCCHHHHHHHHhC
Confidence 444666778999999999998864
No 236
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=88.53 E-value=5.2 Score=31.70 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=47.8
Q ss_pred cChhhHHHHhcCCCcEEEEEECCCCh-HHhhHhHHHHHHHHHcc-C-CCCeEEEEEeCc---cchhHHHHcCC-CCCCeE
Q 026412 28 LTEDNFEKEVGQDRGALVEFYAPWCG-HCKNLAPTYEKVAAAFT-L-EDDVVVANLDAD---KYKDLAEKYGV-SGFPTL 100 (239)
Q Consensus 28 l~~~~f~~~~~~~k~vlV~F~a~wC~-~C~~~~~~~~~~a~~~~-~-~~~v~~~~vd~~---~~~~l~~~~~i-~~~Pt~ 100 (239)
.+++.|...--.+++++|.|.=+.|| -|-.....+..+.+++. . ..++.++.|-+| +-++..++|.. ...|.+
T Consensus 55 ~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~ 134 (207)
T COG1999 55 QDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRW 134 (207)
T ss_pred CCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCe
Confidence 33444444445788999999867764 57777777777777665 2 235655555554 44677777777 445554
Q ss_pred EEE
Q 026412 101 KFF 103 (239)
Q Consensus 101 ~~~ 103 (239)
...
T Consensus 135 ~~l 137 (207)
T COG1999 135 IGL 137 (207)
T ss_pred eee
Confidence 443
No 237
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.51 E-value=1.2 Score=29.04 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.5
Q ss_pred EEEECCCChHHhhHhHHHHHH
Q 026412 45 VEFYAPWCGHCKNLAPTYEKV 65 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~ 65 (239)
+.|++..||.|..+..+++++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 789999999998887776655
No 238
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=88.38 E-value=1 Score=32.12 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=41.2
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-------hHHHHcCCCCCCeEEEEeCCCcCcccc----
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------DLAEKYGVSGFPTLKFFPKGNKDGEEY---- 113 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~Pt~~~~~~g~~~~~~~---- 113 (239)
..|+.++|+.|++....+++- ++.+-.+|+.+.+ ++.+..|. ..--++...+......
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~l~~~~~~---~~~~lin~~~~~~k~l~~~~ 70 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDGPTREELLDILSLLED---GIDPLLNTRGQSYRALNTSN 70 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCChhhHHHHHHHHHHcCC---CHHHheeCCCcchhhCCchh
Confidence 468899999999987666641 4556667765433 33344442 1112343332221111
Q ss_pred -CCCCCHHHHHHHHHHhh
Q 026412 114 -GGGRDLEDFVSFINEKC 130 (239)
Q Consensus 114 -~g~~~~~~l~~~l~~~~ 130 (239)
....+.+++.+++.+.-
T Consensus 71 ~~~~ls~~e~~~~i~~~p 88 (117)
T TIGR01617 71 TFLDLSDKEALELLAEDP 88 (117)
T ss_pred hcccCCHHHHHHHHHhCc
Confidence 12456677777776643
No 239
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=87.98 E-value=3 Score=34.00 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=25.9
Q ss_pred hcCCCcEEEEEECCCChHHhhHhHHHHHHHHHcc
Q 026412 37 VGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT 70 (239)
Q Consensus 37 ~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~ 70 (239)
...+|+.+++..+.|||.|...+=.+-....+|.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 3678999999999999999987644444445554
No 240
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=87.51 E-value=1.1 Score=32.72 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=23.0
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~ 85 (239)
+..|+.|||+.|++....+++- ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCC
Confidence 4578899999999976555432 355666666533
No 241
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=87.46 E-value=1 Score=27.70 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=31.3
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch--hHHHHcCCCCCCeEEE
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK--DLAEKYGVSGFPTLKF 102 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~--~l~~~~~i~~~Pt~~~ 102 (239)
..|+.++|+.|.+..-.+....- .+....++..... ++.+..+...+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 35788999999988766654422 2444455543222 2444556667898643
No 242
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=87.44 E-value=0.99 Score=28.69 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=28.2
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 101 (239)
..++.++|++|++.+-.+....- .+....++........+..+-..+|++.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl------~~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNI------PVEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCC------CeEEEECCCCchHHHHHhcCCCccCEEE
Confidence 35778999999988765554322 2333344433322223333444688863
No 243
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=87.28 E-value=3.1 Score=28.06 Aligned_cols=74 Identities=16% Similarity=0.015 Sum_probs=55.2
Q ss_pred CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCC
Q 026412 41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 117 (239)
Q Consensus 41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~ 117 (239)
.+++=.|.+..-+.+++....+.++-+.+-. +.+.+--||+.+++++++.++|-.+||++=..+. ...+..|..
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~-g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~--P~rriiGdl 76 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ-GVYALKVIDVLKNPQLAEEDKILATPTLSKILPP--PVRKIIGDL 76 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC--Ccceeeccc
Confidence 4566677788888888888888888776543 3477878899999999999999999997544333 334555653
No 244
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=87.21 E-value=1.5 Score=27.74 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=31.7
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc----cchhHHHHcCCCCCCeEEE
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD----KYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~----~~~~l~~~~~i~~~Pt~~~ 102 (239)
..|+.++|++|++..-.+....- .+....++.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI------DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC------CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 46788999999998776654422 2334445432 1234555555567899754
No 245
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=86.22 E-value=0.73 Score=32.30 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=15.9
Q ss_pred EEEEECCCChHHhhHhHHHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYE 63 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~ 63 (239)
+..|+.|||+.|++....++
T Consensus 1 i~iy~~~~C~~crka~~~L~ 20 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLE 20 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHH
Confidence 35788999999999766555
No 246
>PRK09301 circadian clock protein KaiB; Provisional
Probab=85.91 E-value=3.9 Score=28.48 Aligned_cols=75 Identities=16% Similarity=0.008 Sum_probs=56.9
Q ss_pred CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCC
Q 026412 40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 117 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~ 117 (239)
..+++-.|.+..-+..++....+.++-+.+.. +.+.+=-||+.+++++++.++|-.+||++=.-+. ...+..|..
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~-g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~--P~rriiGDl 79 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK-GVYALKVIDVLKNPQLAEEDKILATPTLAKILPP--PVRKIIGDL 79 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC--Ccceeeccc
Confidence 45677778888888888888888888776543 3477878899999999999999999997544333 334556653
No 247
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=85.68 E-value=2.2 Score=30.28 Aligned_cols=45 Identities=13% Similarity=0.326 Sum_probs=30.0
Q ss_pred hHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeC
Q 026412 57 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK 105 (239)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 105 (239)
.+.+.+..+.+.....+.. ..|.+ ++.+.++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~I--dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQI--DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeE--ChhHHhhCCceEcCEEEEEcC
Confidence 5566666555555433222 23333 588999999999999988876
No 248
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=85.40 E-value=1.9 Score=27.35 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=39.5
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHH
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 123 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~ 123 (239)
..|+.++|++|++..-.+....- ++....+|.... +++.+......+|++. .+| .. -.....+.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi------~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~-~~------l~es~aI~ 66 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV------SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRD-LV------LYESRIIM 66 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC------ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECC-EE------EEcHHHHH
Confidence 46788999999998765543322 233444554432 3444444555789763 232 11 23556677
Q ss_pred HHHHH
Q 026412 124 SFINE 128 (239)
Q Consensus 124 ~~l~~ 128 (239)
.|+.+
T Consensus 67 ~yL~~ 71 (73)
T cd03059 67 EYLDE 71 (73)
T ss_pred HHHHh
Confidence 77654
No 249
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=84.73 E-value=4.8 Score=25.85 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=45.6
Q ss_pred EEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-chhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHH
Q 026412 46 EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 124 (239)
Q Consensus 46 ~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~ 124 (239)
.++.++|++|++..-.++...- .+.+..++..+ ...+.....-..+|++. .+| .. . .+...+.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i------~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g-~~---l---~dS~~I~~ 65 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI------PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDG-EV---L---TDSAAIIE 65 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE------EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETT-EE---E---ESHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC------eEEEeccCcccchhHHHhhcccccceEEE--ECC-EE---E---eCHHHHHH
Confidence 3678999999998755543321 24555666544 34555566666799985 444 21 1 26788999
Q ss_pred HHHHhhC
Q 026412 125 FINEKCG 131 (239)
Q Consensus 125 ~l~~~~~ 131 (239)
||.++.+
T Consensus 66 yL~~~~~ 72 (75)
T PF13417_consen 66 YLEERYP 72 (75)
T ss_dssp HHHHHST
T ss_pred HHHHHcC
Confidence 9988764
No 250
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=84.55 E-value=0.98 Score=31.94 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=41.1
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCCCCCeEEEEeCCCcCccc--cC---C
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKFFPKGNKDGEE--YG---G 115 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g~~~~~~--~~---g 115 (239)
..|+.|+|+.|++....+++- ++.+-.+|+..++ ++..-.+..+.|.--+++..++.... .. .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 468899999999987666542 3556666654332 33333333344554455443321111 01 1
Q ss_pred CCCHHHHHHHHHHh
Q 026412 116 GRDLEDFVSFINEK 129 (239)
Q Consensus 116 ~~~~~~l~~~l~~~ 129 (239)
..+.+++.+++.+.
T Consensus 74 ~~s~~e~~~~l~~~ 87 (111)
T cd03036 74 SLSEEEALELLSSD 87 (111)
T ss_pred cCCHHHHHHHHHhC
Confidence 23556677777654
No 251
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.44 E-value=2.5 Score=33.93 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=34.6
Q ss_pred hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCC
Q 026412 87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR 134 (239)
Q Consensus 87 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 134 (239)
..++++||+++|++++ .+ .....|..+++.+..-|.+.++...
T Consensus 175 ~~A~e~gI~gVP~fv~--d~---~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DG---KYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE--cC---cEeecCCCCHHHHHHHHHHHHhccc
Confidence 5678999999999877 22 2556899999999999999876543
No 252
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=83.76 E-value=2.4 Score=26.98 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=31.8
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----chhHHHHcCCCCCCeEE
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~ 101 (239)
..|+.++|++|++..-.+....- .+....+|... .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 46889999999987655554322 24455555432 24555555556799984
No 253
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.96 E-value=3 Score=32.62 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=33.1
Q ss_pred hhHHHHcCCCCCCeEEEEeCCCcCccccCC--CCCHHHHHHHHHHhh
Q 026412 86 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINEKC 130 (239)
Q Consensus 86 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g--~~~~~~l~~~l~~~~ 130 (239)
..++++.++.+|||+.+-++| +....-.| ..+++++..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng-~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNG-TMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCC-ceEeccCCcccCCcHHHHHHHHHHH
Confidence 468889999999999999876 43333345 467888888887764
No 254
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=81.93 E-value=20 Score=30.18 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=59.0
Q ss_pred cCCCcEEEEEECC-----CChHHhhHhHHHHHHHHHccCC----CCeEEEEEeCccchhHHHHc--CCCCCCeEEEEeCC
Q 026412 38 GQDRGALVEFYAP-----WCGHCKNLAPTYEKVAAAFTLE----DDVVVANLDADKYKDLAEKY--GVSGFPTLKFFPKG 106 (239)
Q Consensus 38 ~~~k~vlV~F~a~-----wC~~C~~~~~~~~~~a~~~~~~----~~v~~~~vd~~~~~~l~~~~--~i~~~Pt~~~~~~g 106 (239)
.++|.|.+..-.. ...+-++++...++.++.+.+. .++.|+.+|..+. +.+. .--+.|++++|.-.
T Consensus 248 ~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~---~nqilM~als~P~l~i~Nts 324 (468)
T KOG4277|consen 248 ASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDL---ANQILMAALSEPHLFIFNTS 324 (468)
T ss_pred cCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHH---HHHHHHHhhcCCeEEEEecC
Confidence 5667666655432 3456788999999999888765 4689999987643 2222 22368999999765
Q ss_pred CcCcccc---CCCCCHHHHHHHHHHhh
Q 026412 107 NKDGEEY---GGGRDLEDFVSFINEKC 130 (239)
Q Consensus 107 ~~~~~~~---~g~~~~~~l~~~l~~~~ 130 (239)
+.....- ....+.+++++||++..
T Consensus 325 nqeYfLse~d~qikniedilqFients 351 (468)
T KOG4277|consen 325 NQEYFLSEDDPQIKNIEDILQFIENTS 351 (468)
T ss_pred chheeeccCChhhhhHHHHHHHHhccc
Confidence 4322211 12367899999998743
No 255
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=79.98 E-value=5.4 Score=26.69 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=33.0
Q ss_pred EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-hhHHHHcCCCCCCeEEE
Q 026412 43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-KDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~ 102 (239)
.+..|+.+.|++|++..-.+....- .+.+..++.... ..+.+......+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl------~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNI------PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCC------CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4666778899999987655543321 344555655433 33555555667898753
No 256
>PRK12559 transcriptional regulator Spx; Provisional
Probab=78.94 E-value=2.5 Score=30.90 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=41.0
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCCCeEEEEeCCCcCccccC---CC
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GG 116 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~---g~ 116 (239)
+..|+.|+|+.|++....+++- ++.+-.+|+.++ .++..-+.-.+.|.--++...++...... ..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~~~ 73 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINIEE 73 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCccc
Confidence 5678899999999976555432 344555555432 23333333323443344544332211111 13
Q ss_pred CCHHHHHHHHHHhh
Q 026412 117 RDLEDFVSFINEKC 130 (239)
Q Consensus 117 ~~~~~l~~~l~~~~ 130 (239)
.+.+++++.+.+.-
T Consensus 74 ls~~e~i~ll~~~P 87 (131)
T PRK12559 74 LSLNEFYKLIIEHP 87 (131)
T ss_pred CCHHHHHHHHHhCc
Confidence 45667777776543
No 257
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=76.71 E-value=3.2 Score=29.43 Aligned_cols=32 Identities=13% Similarity=0.299 Sum_probs=21.9
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~ 83 (239)
+..|+.++|+.|++....+++- ++.+-.+|+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecC
Confidence 3467889999999987666542 3445556654
No 258
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=73.05 E-value=48 Score=30.41 Aligned_cols=105 Identities=14% Similarity=0.311 Sum_probs=66.8
Q ss_pred EEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHH-H--HHHHHHccCCCCeEEEEEeCccchhHHH--------HcCC
Q 026412 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPT-Y--EKVAAAFTLEDDVVVANLDADKYKDLAE--------KYGV 94 (239)
Q Consensus 26 ~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~-~--~~~a~~~~~~~~v~~~~vd~~~~~~l~~--------~~~i 94 (239)
.....+.|++.-.+++++++-..-+.|.+|.-|..+ | ++.++.+. .+++-++||.++.+++-+ ..|-
T Consensus 98 ypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~iln--enfv~ikVDREERPDVDK~YM~Fv~assg~ 175 (786)
T KOG2244|consen 98 YPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILN--ENFVKIKVDREERPDVDKLYMAFVVASSGG 175 (786)
T ss_pred CcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHh--hhhhhhccChhhcCchHHHHHHHHHhccCC
Confidence 334467899999999999999999999999988653 2 23455442 356667787777666554 3355
Q ss_pred CCCCeEEEEeCCCcC--------ccccCCCCCHHHHHHHHHHhhCC
Q 026412 95 SGFPTLKFFPKGNKD--------GEEYGGGRDLEDFVSFINEKCGT 132 (239)
Q Consensus 95 ~~~Pt~~~~~~g~~~--------~~~~~g~~~~~~l~~~l~~~~~~ 132 (239)
-|+|.-++..++-.. +..-.|......+..-|.+.-..
T Consensus 176 GGWPmsV~LTPdL~PlvgGTYFPP~d~~g~~gF~TvL~~I~~~w~~ 221 (786)
T KOG2244|consen 176 GGWPMSVFLTPDLKPLVGGTYFPPNDNYGRPGFKTVLKKIKDAWNS 221 (786)
T ss_pred CCCceeEEeCCCcccccCCcccCCCCCCCCccHHHHHHHHHHHHHh
Confidence 679988877654210 11122344555555555554433
No 259
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=72.12 E-value=41 Score=29.07 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=32.1
Q ss_pred hhHHHHHHHhhhhhCCCCchHHHHHHHHHHHhccCCh---hhhhHHHHhhhh
Q 026412 186 HGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISA---AKADEFVLKKNI 234 (239)
Q Consensus 186 ~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~---~~~~~~~~r~ni 234 (239)
.+++-..+|.+++....+-++.-+.+|-+-+.+..+. ...+++..++|.
T Consensus 182 ~~~~l~~~Fs~lM~~~~~~i~~~v~~L~~r~~~~~~~~~~~d~~eli~~l~k 233 (411)
T KOG2757|consen 182 SKKVLKLCFSRLMKAEENVIKIQVSKLVKRLQNELNGFNLTDLEELILKLNK 233 (411)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhccccccCcccHHHHHHHHHh
Confidence 3445556677766666666666677777777655444 566788888874
No 260
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=72.09 E-value=7.8 Score=30.53 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=31.9
Q ss_pred chhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412 85 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 85 ~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 128 (239)
+|.+.++|+|+.+|++++.... ......|..+...-.+.+..
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~--~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ--GYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC--CCCEEEecccHHHHHHHHHh
Confidence 5789999999999999998653 33455677777776666654
No 261
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=71.74 E-value=4.9 Score=29.42 Aligned_cols=76 Identities=11% Similarity=0.122 Sum_probs=39.5
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-------hHHHHcCCCCCCeEEEEeCCCcCcccc---
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------DLAEKYGVSGFPTLKFFPKGNKDGEEY--- 113 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~Pt~~~~~~g~~~~~~~--- 113 (239)
+..|+.|+|+.|++....+++- ++.+-.+|+...+ .+.+..+. +.--++...++.....
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~~~~~s~~eL~~~l~~~~~---~~~~lin~~~~~~k~L~~~ 70 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLGKEPLTKEEILAILTKTEN---GIESIVSSKNRYAKALDCD 70 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECCCCCCCHHHHHHHHHHhCC---CHHHhhccCcHHHHhCCcc
Confidence 4567889999999976544421 3556666654322 33344332 2222343332211111
Q ss_pred CCCCCHHHHHHHHHHhh
Q 026412 114 GGGRDLEDFVSFINEKC 130 (239)
Q Consensus 114 ~g~~~~~~l~~~l~~~~ 130 (239)
....+.+++.+++.++-
T Consensus 71 ~~~ls~~e~i~ll~~~P 87 (132)
T PRK13344 71 IEELSVNEVIDLIQENP 87 (132)
T ss_pred hhcCCHHHHHHHHHhCc
Confidence 12456677777776643
No 262
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=71.43 E-value=6.6 Score=30.18 Aligned_cols=27 Identities=33% Similarity=0.749 Sum_probs=24.6
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHcc
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFT 70 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~ 70 (239)
+..|+.+.||+|-...+.+.++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 568889999999999999999999984
No 263
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=71.22 E-value=9.4 Score=20.20 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcc-CChhhhhHHHH
Q 026412 206 KKEIDRLQRMLDKS-ISAAKADEFVL 230 (239)
Q Consensus 206 ~~e~~rl~~~l~~~-~~~~~~~~~~~ 230 (239)
..++++|..+.+.+ +|++..+..+.
T Consensus 2 ~~~L~~L~~l~~~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 2 EDRLEKLKELYDKGEISEEEYEQKKA 27 (31)
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 46788999999877 99885554443
No 264
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=70.49 E-value=25 Score=28.87 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=27.8
Q ss_pred CCCcEEEEEECCCChH-HhhHhHHHHHHHHHccCCCCe----EEEEEeC
Q 026412 39 QDRGALVEFYAPWCGH-CKNLAPTYEKVAAAFTLEDDV----VVANLDA 82 (239)
Q Consensus 39 ~~k~vlV~F~a~wC~~-C~~~~~~~~~~a~~~~~~~~v----~~~~vd~ 82 (239)
.++.++++|.-+.||. |-.....+.++.++......+ .|+.+|-
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP 186 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP 186 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCc
Confidence 4789999999988874 655555555555554433322 4556664
No 265
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=66.93 E-value=84 Score=27.13 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=69.6
Q ss_pred CCCcEEcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH----HHcCCC
Q 026412 22 ADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA----EKYGVS 95 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~ 95 (239)
.+.+..++..++-+.= .-+...+|.|--..-|.-.++...+.++|+....++++.++-||-++-+-+. +-|+|.
T Consensus 248 rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Id 327 (383)
T PF01216_consen 248 RPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGID 327 (383)
T ss_dssp S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-
T ss_pred hhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcc
Confidence 3456778887754443 3356677888888899999999999999999988889999999998765433 457776
Q ss_pred -CCCeEEEEeCCCcCcccc-----CCCCCHHHHHHHHHHhhC
Q 026412 96 -GFPTLKFFPKGNKDGEEY-----GGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 96 -~~Pt~~~~~~g~~~~~~~-----~g~~~~~~l~~~l~~~~~ 131 (239)
.-|.+-+..-.....+-+ ....+++++..||.+.+.
T Consensus 328 l~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVls 369 (383)
T PF01216_consen 328 LSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLS 369 (383)
T ss_dssp TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHC
T ss_pred ccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhc
Confidence 469998886543322211 123689999999998874
No 266
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=66.69 E-value=49 Score=24.36 Aligned_cols=89 Identities=9% Similarity=0.093 Sum_probs=58.9
Q ss_pred hcCCCcEEEEEECCCC----hHHhhH--hHHHHHHHHHccCCCCeEEEEEeCccch------------------hHHHHc
Q 026412 37 VGQDRGALVEFYAPWC----GHCKNL--APTYEKVAAAFTLEDDVVVANLDADKYK------------------DLAEKY 92 (239)
Q Consensus 37 ~~~~k~vlV~F~a~wC----~~C~~~--~~~~~~~a~~~~~~~~v~~~~vd~~~~~------------------~l~~~~ 92 (239)
.+..|+++|+...|.- .+|++. .+.+-++-+ .++++-.-|++... ..++.+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~-----~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~ 92 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS-----QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNI 92 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH-----cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhc
Confidence 4557899999998875 456655 233333322 25766666765421 245567
Q ss_pred CCCCCCeEEEEeCCC---cCccccCCCCCHHHHHHHHHHhh
Q 026412 93 GVSGFPTLKFFPKGN---KDGEEYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 93 ~i~~~Pt~~~~~~g~---~~~~~~~g~~~~~~l~~~l~~~~ 130 (239)
+...+|.+.+.-... ....+..|..++++++.-+....
T Consensus 93 ~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 93 KTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 889999998875432 24567789999999998876543
No 267
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=66.68 E-value=28 Score=24.52 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=36.7
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~ 84 (239)
-++++++|.=.|+.|+.-. --..++++.++|... .+.+...-|.+
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~-gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK-GLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG-TEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC-CeEEEeeehHH
Confidence 4578899999999999988 667899999999754 58888887763
No 268
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=66.45 E-value=10 Score=30.59 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=37.9
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC--CCeEEEEEeCc
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE--DDVVVANLDAD 83 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~--~~v~~~~vd~~ 83 (239)
..+..+||-+-..+|..|..-...++.+..++..+ .+|.|.-||-.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 45788999999999999999999999999887654 37888888754
No 269
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=66.35 E-value=54 Score=24.74 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=48.3
Q ss_pred cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----------hhHH-HHc
Q 026412 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------KDLA-EKY 92 (239)
Q Consensus 25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----------~~l~-~~~ 92 (239)
+..++...+.=.--.++.++|.=.|+-|+.--+ -..++.+.++|+++ .+.+...-|++- ..+| ..|
T Consensus 10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~-Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~Y 87 (162)
T COG0386 10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDK-GFEVLGFPCNQFGGQEPGSDEEIAKFCQLNY 87 (162)
T ss_pred eeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhC-CcEEEeccccccccCCCCCHHHHHHHHHhcc
Confidence 444555444333357899999999999997554 34567777888754 588888877631 1344 357
Q ss_pred CCCCCCeEE
Q 026412 93 GVSGFPTLK 101 (239)
Q Consensus 93 ~i~~~Pt~~ 101 (239)
||+ +|.+-
T Consensus 88 gVt-Fp~f~ 95 (162)
T COG0386 88 GVT-FPMFS 95 (162)
T ss_pred Cce-eeeee
Confidence 774 77653
No 270
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=66.15 E-value=3 Score=27.82 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=42.6
Q ss_pred EECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412 47 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 47 F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 101 (239)
|-+..-+.+.+....+..+.+... .+.+.+--||+.+++++++.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYL-GGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHC-TTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhC-CCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 334445566777778888887754 457889899999999999999999999974
No 271
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=65.13 E-value=15 Score=25.58 Aligned_cols=53 Identities=15% Similarity=0.307 Sum_probs=33.1
Q ss_pred EECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC--CCCeEEEE
Q 026412 47 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GFPTLKFF 103 (239)
Q Consensus 47 F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~ 103 (239)
||-.+|+.|......+... ...+.+.++.+.-....++.+.++++ ...+.+..
T Consensus 2 ~YDg~C~lC~~~~~~l~~~----d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 56 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR----DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL 56 (114)
T ss_pred EECCCCHhHHHHHHHHHhc----CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE
Confidence 7889999999988777665 22235666665333444455667765 24444443
No 272
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=65.05 E-value=17 Score=22.68 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=30.3
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----chhHHHHcCCCCCCeEEE
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~ 102 (239)
..|+.++|++|.+..-.+....- .+....+|... ..++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~------~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI------PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC------CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 45788999999988655554322 24444555321 234444444557898753
No 273
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.53 E-value=45 Score=28.98 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=63.3
Q ss_pred EEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412 26 VVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP 104 (239)
Q Consensus 26 ~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 104 (239)
..++.+-.+++- -.+..-+=-|++-.|..|-..-..+.-.+-.. +++.-..||..-..+=.+.-+|-++||++ -
T Consensus 101 pk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlN---p~I~H~~IdGa~Fq~Evear~IMaVPtvf--l 175 (520)
T COG3634 101 PKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLN---PRIKHTAIDGALFQDEVEARNIMAVPTVF--L 175 (520)
T ss_pred CchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcC---CCceeEEecchhhHhHHHhccceecceEE--E
Confidence 445555566655 45667888888999999998888877665553 57888888876444445555788999964 4
Q ss_pred CCCcCccccCCCCCHHHHHHHHHH
Q 026412 105 KGNKDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 105 ~g~~~~~~~~g~~~~~~l~~~l~~ 128 (239)
+|. . --.|..+.+++..-+..
T Consensus 176 nGe-~--fg~GRmtleeilaki~~ 196 (520)
T COG3634 176 NGE-E--FGQGRMTLEEILAKIDT 196 (520)
T ss_pred cch-h--hcccceeHHHHHHHhcC
Confidence 441 1 11455677777766643
No 274
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=64.07 E-value=8.2 Score=29.90 Aligned_cols=36 Identities=31% Similarity=0.531 Sum_probs=27.0
Q ss_pred hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412 86 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 86 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
...+.+.||.++|++++ +| + ....|..+.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g-~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NG-K--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CC-e--EeecCCCCHHHHHHHh
Confidence 45677889999999877 33 2 3457889999888765
No 275
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=63.32 E-value=1.3e+02 Score=27.86 Aligned_cols=77 Identities=12% Similarity=0.157 Sum_probs=43.3
Q ss_pred CCCcEEcChhhHHHHhcCCCcEEEEEECCCC-h-HHhhHhHHHHHHHHHccC-CCCeEEEEEeCccchh-----H---HH
Q 026412 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWC-G-HCKNLAPTYEKVAAAFTL-EDDVVVANLDADKYKD-----L---AE 90 (239)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC-~-~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~~~~~-----l---~~ 90 (239)
......|++.+-+-+-.=.+++-|.+|.+.- + .-+.....+.++-++|+. .+++.+-.+|-..+++ + +.
T Consensus 29 ~~k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~~~~~~ 108 (552)
T TIGR03521 29 EDKRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEILDSLA 108 (552)
T ss_pred CCCceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHHHHHHH
Confidence 4566777777665544446777776665432 2 223333444444444432 2358888999775533 2 34
Q ss_pred HcCCCCCC
Q 026412 91 KYGVSGFP 98 (239)
Q Consensus 91 ~~~i~~~P 98 (239)
+|||...+
T Consensus 109 ~~gi~~~~ 116 (552)
T TIGR03521 109 QYGIKPAN 116 (552)
T ss_pred HcCCCcce
Confidence 57887555
No 276
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=61.43 E-value=11 Score=26.70 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=15.4
Q ss_pred EEEEECCCChHHhhHhHHHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYE 63 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~ 63 (239)
+..|+.|.|+.|++....++
T Consensus 2 i~iy~~p~C~~crkA~~~L~ 21 (113)
T cd03033 2 IIFYEKPGCANNARQKALLE 21 (113)
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 45788999999998765544
No 277
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=61.33 E-value=3.9 Score=23.53 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=14.2
Q ss_pred ChhHHHHHHHHHHHHHHhhhcCCCcEEcC
Q 026412 1 MERYQIWLALGTLTLFFVSALADDVVVLT 29 (239)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~v~~l~ 29 (239)
|||+.+++++++. +++++|..+.+.+.-
T Consensus 1 MkKi~~~~i~~~~-~~L~aCQaN~iRDvq 28 (46)
T PF02402_consen 1 MKKIIFIGIFLLT-MLLAACQANYIRDVQ 28 (46)
T ss_pred CcEEEEeHHHHHH-HHHHHhhhcceecCC
Confidence 7766554443333 445555555555443
No 278
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=60.90 E-value=12 Score=28.55 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=25.2
Q ss_pred hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412 86 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 86 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
...+.++||.++|++++ +| ..+.|....+.+...|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g----~~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DG----EMFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CC----eeecccccHHHHHHHh
Confidence 35677889999999877 33 2456877777766654
No 279
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=60.58 E-value=91 Score=25.34 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=50.4
Q ss_pred CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEE--EEeCccc----------------hhHHHHcCCCCCCeEEE
Q 026412 41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA--NLDADKY----------------KDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~--~vd~~~~----------------~~l~~~~~i~~~Pt~~~ 102 (239)
..|+=.|++..|..|-.....+.+++++ +++.-. .||..++ ......|+-++++|=-.
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~----~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQa 117 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD----PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQA 117 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC----CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchh
Confidence 4466668899999998887777776654 454333 4554322 24566777777766655
Q ss_pred EeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412 103 FPKGNKDGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~ 129 (239)
+-+|. ......++.+|..-|...
T Consensus 118 vvnGr----~~~~Gad~~~i~~~i~a~ 140 (261)
T COG5429 118 VVNGR----VHANGADPGAIEDAIAAM 140 (261)
T ss_pred eeech----hhhcCCCHHHHHHHHHHh
Confidence 65662 223345777777776544
No 280
>PRK11622 hypothetical protein; Provisional
Probab=57.58 E-value=68 Score=28.03 Aligned_cols=18 Identities=0% Similarity=0.170 Sum_probs=10.1
Q ss_pred hhHHHHhc--CCCcEEEEEE
Q 026412 31 DNFEKEVG--QDRGALVEFY 48 (239)
Q Consensus 31 ~~f~~~~~--~~k~vlV~F~ 48 (239)
.++++++. +++.+.+.-|
T Consensus 27 ~~~~~~~~~a~~~tv~~~~w 46 (401)
T PRK11622 27 KDWQQILEEAKGQTVYFYAW 46 (401)
T ss_pred CCHHHHHHHhcCCEEEEEEe
Confidence 67888883 3333444444
No 281
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=56.05 E-value=1e+02 Score=24.59 Aligned_cols=73 Identities=26% Similarity=0.296 Sum_probs=47.1
Q ss_pred EECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412 47 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 47 F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
|.-..|..|-.+-..++. + .--+.|.+ +++...+.++-+-+|-++|.+ |.+| + ..|.++.+++++...+
T Consensus 16 ~~HktC~ssy~Lf~~L~n---k-gll~~Vki--i~a~~p~f~~~~~~V~SvP~V--f~DG-e--l~~~dpVdp~~ies~~ 84 (265)
T COG5494 16 FTHKTCVSSYMLFEYLEN---K-GLLGKVKI--IDAELPPFLAFEKGVISVPSV--FIDG-E--LVYADPVDPEEIESIL 84 (265)
T ss_pred EEecchHHHHHHHHHHHh---c-CCCCCceE--EEcCCChHHHhhcceeecceE--EEcC-e--EEEcCCCCHHHHHHHH
Confidence 455678888776554442 1 11124444 455566666666678899985 4455 2 4577889999999998
Q ss_pred HHhh
Q 026412 127 NEKC 130 (239)
Q Consensus 127 ~~~~ 130 (239)
..+.
T Consensus 85 ~G~~ 88 (265)
T COG5494 85 SGQV 88 (265)
T ss_pred cCcc
Confidence 7653
No 282
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=55.53 E-value=1.1e+02 Score=24.94 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=61.5
Q ss_pred CCcEEcChhhHHHHhcCCCcEEEEEECCC-C-hHHhhHhHHHHHHHHHccC--CCCeEEEEEeCccchhHHHH----cCC
Q 026412 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPW-C-GHCKNLAPTYEKVAAAFTL--EDDVVVANLDADKYKDLAEK----YGV 94 (239)
Q Consensus 23 ~~v~~l~~~~f~~~~~~~k~vlV~F~a~w-C-~~C~~~~~~~~~~a~~~~~--~~~v~~~~vd~~~~~~l~~~----~~i 94 (239)
+....+++.+-+-+-.=.++|-|.+|.+- = +.-....+.+..+-++|+. .+++.+-.||.+.+++.+++ +|+
T Consensus 7 ~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 7 NKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred CCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 44556666665555444556666665544 1 1123344444444444432 23699999998766655555 887
Q ss_pred CC----------------CCeEEEEeCCCcCccccC----CCCCHHHHHHHHHHhhCCC
Q 026412 95 SG----------------FPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINEKCGTS 133 (239)
Q Consensus 95 ~~----------------~Pt~~~~~~g~~~~~~~~----g~~~~~~l~~~l~~~~~~~ 133 (239)
.. ++.+++-..+.....++. ...-..+|...|.+.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~~~ 145 (271)
T PF09822_consen 87 QPVQIEIVDNGKASIVTVYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVTSDE 145 (271)
T ss_pred CccceeecccccccceeecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHhccc
Confidence 76 455544333322333332 2344677888888776653
No 283
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=53.29 E-value=6.3 Score=18.07 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.9
Q ss_pred ChhHHH
Q 026412 1 MERYQI 6 (239)
Q Consensus 1 Mk~~~~ 6 (239)
|+++.+
T Consensus 1 MMk~vI 6 (19)
T PF13956_consen 1 MMKLVI 6 (19)
T ss_pred CceehH
Confidence 555433
No 284
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=50.94 E-value=37 Score=21.61 Aligned_cols=51 Identities=6% Similarity=-0.109 Sum_probs=30.4
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----chhHHHHcCCCCCCeEE
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~ 101 (239)
..|+.+.|+.|++.+-.+.+..- .+.+..+|... .+++.+.-.-..+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl------~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL------RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC------CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 56788899999887644443322 34556666532 23454444455699884
No 285
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=50.85 E-value=76 Score=21.51 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=40.6
Q ss_pred CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412 50 PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128 (239)
Q Consensus 50 ~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 128 (239)
.+|++|++..=.+.... -.+.+..||....+ .+.+......+|++. .+| . . -.+...+.+||.+
T Consensus 20 g~cpf~~rvrl~L~eKg------i~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~-~--~----i~eS~~I~eYLde 84 (91)
T cd03061 20 GNCPFCQRLFMVLWLKG------VVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNG-E--V----KTDNNKIEEFLEE 84 (91)
T ss_pred CCChhHHHHHHHHHHCC------CceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECC-E--E----ecCHHHHHHHHHH
Confidence 67999999765544331 13555667665433 444444555799654 333 1 1 1367888899988
Q ss_pred hhCC
Q 026412 129 KCGT 132 (239)
Q Consensus 129 ~~~~ 132 (239)
...+
T Consensus 85 ~~~~ 88 (91)
T cd03061 85 TLCP 88 (91)
T ss_pred HccC
Confidence 7554
No 286
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=50.09 E-value=1.2e+02 Score=24.99 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=49.9
Q ss_pred HHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCC--CeEEEEEeCccch------------------------
Q 026412 33 FEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLED--DVVVANLDADKYK------------------------ 86 (239)
Q Consensus 33 f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~--~v~~~~vd~~~~~------------------------ 86 (239)
+...+...-.+|..|+..|-..|-+- .+......+..++ .+.++.|+..++.
T Consensus 116 ~~~~l~gkvSlV~l~s~~~ge~~~~s--w~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~~~~~lrk~ip~~~h~~ 193 (252)
T PF05176_consen 116 TTDLLRGKVSLVCLFSSAWGEEMVDS--WTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKLFMGSLRKSIPEERHDR 193 (252)
T ss_pred cccccCCceEEEEEeehHHHHHHHHH--HhhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhhhhhccCCHHHCce
Confidence 33444433345555666665433322 2223444554445 7888888865431
Q ss_pred -----------hHHHHcCCCC--CCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412 87 -----------DLAEKYGVSG--FPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 87 -----------~l~~~~~i~~--~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
++.+.+++.. ...+++.+..++..+.-.|..+++++....
T Consensus 194 Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~ 246 (252)
T PF05176_consen 194 YFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLW 246 (252)
T ss_pred EEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHH
Confidence 3445555553 444555555555556666777777776554
No 287
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=48.78 E-value=51 Score=20.71 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=38.0
Q ss_pred EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc----cchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD----KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 119 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 119 (239)
+..|+.+.|+.|++..-.+....- .+....++.. ..+++.+......+|++. .+| .. -...
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g-~~------l~es 66 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV------DYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGD-LK------LFES 66 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC------CcEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECC-EE------EEcH
Confidence 445667779999988765554322 2444445542 123455555566799874 233 11 1345
Q ss_pred HHHHHHHH
Q 026412 120 EDFVSFIN 127 (239)
Q Consensus 120 ~~l~~~l~ 127 (239)
..+.+||.
T Consensus 67 ~aI~~yL~ 74 (76)
T cd03053 67 RAITRYLA 74 (76)
T ss_pred HHHHHHHh
Confidence 56666664
No 288
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=47.10 E-value=32 Score=26.01 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=3.8
Q ss_pred hHHHHhhhhh
Q 026412 226 DEFVLKKNIL 235 (239)
Q Consensus 226 ~~~~~r~nil 235 (239)
+++++|+|||
T Consensus 68 ~D~~KRL~iL 77 (157)
T PF07304_consen 68 DDIEKRLNIL 77 (157)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 289
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=46.85 E-value=20 Score=27.40 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=17.9
Q ss_pred hhHHHHcCCCCCCeEEEEeCCC
Q 026412 86 KDLAEKYGVSGFPTLKFFPKGN 107 (239)
Q Consensus 86 ~~l~~~~~i~~~Pt~~~~~~g~ 107 (239)
...+.++||.++||+++...+.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3567788999999999987663
No 290
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=45.56 E-value=40 Score=20.54 Aligned_cols=21 Identities=10% Similarity=-0.161 Sum_probs=11.9
Q ss_pred ChhHHHHHHHHHHHHHHhhhc
Q 026412 1 MERYQIWLALGTLTLFFVSAL 21 (239)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~ 21 (239)
||+.+.+++++.+++.+.+|.
T Consensus 1 mk~~~~s~~ala~l~sLA~CG 21 (58)
T COG5567 1 MKNVFKSLLALATLFSLAGCG 21 (58)
T ss_pred ChhHHHHHHHHHHHHHHHhcc
Confidence 777766655554444444444
No 291
>PF15240 Pro-rich: Proline-rich
Probab=45.44 E-value=9.7 Score=29.32 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhcCCCcEEcChh
Q 026412 10 LGTLTLFFVSALADDVVVLTED 31 (239)
Q Consensus 10 ~~~~~~~~~~~~~~~v~~l~~~ 31 (239)
||.++||+.+++...-.+++.+
T Consensus 5 LLSvALLALSSAQ~~dEdv~~e 26 (179)
T PF15240_consen 5 LLSVALLALSSAQSTDEDVSQE 26 (179)
T ss_pred HHHHHHHHhhhccccccccccc
Confidence 3334444444433333333333
No 292
>PRK10386 curli assembly protein CsgE; Provisional
Probab=44.45 E-value=21 Score=26.07 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=12.4
Q ss_pred ChhHHHHHHHHHHHHHHhhh
Q 026412 1 MERYQIWLALGTLTLFFVSA 20 (239)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~ 20 (239)
||++..+++++++++++++.
T Consensus 1 ~~r~~~~~l~~~~l~~~~~~ 20 (130)
T PRK10386 1 MKRYLRWIVAAELLFAAGNL 20 (130)
T ss_pred ChhHHHHHHHHHHHHhCccc
Confidence 88887776665555444433
No 293
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=44.41 E-value=36 Score=18.79 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=3.5
Q ss_pred ChhHHH
Q 026412 1 MERYQI 6 (239)
Q Consensus 1 Mk~~~~ 6 (239)
||.+.+
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 676544
No 294
>COG5510 Predicted small secreted protein [Function unknown]
Probab=44.26 E-value=32 Score=19.80 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.7
Q ss_pred ChhHHH
Q 026412 1 MERYQI 6 (239)
Q Consensus 1 Mk~~~~ 6 (239)
||+.++
T Consensus 2 mk~t~l 7 (44)
T COG5510 2 MKKTIL 7 (44)
T ss_pred chHHHH
Confidence 455433
No 295
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=43.24 E-value=1.2e+02 Score=21.54 Aligned_cols=78 Identities=18% Similarity=0.373 Sum_probs=46.9
Q ss_pred CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-hHHHHcC--CCCCCeEEEEeCCCcCc---cccCCC---CCHHH
Q 026412 51 WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-DLAEKYG--VSGFPTLKFFPKGNKDG---EEYGGG---RDLED 121 (239)
Q Consensus 51 wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-~l~~~~~--i~~~Pt~~~~~~g~~~~---~~~~g~---~~~~~ 121 (239)
.|+||..++-.+...-..- ..+-+..|+....+ .+....| -++.|++++-. |...+ ..+.|. .+.+.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~---~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~-~~~~~~~~~~~~~~rfi~d~~~ 98 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLR---ERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD-GAPSPDDAGSHGGRRFIDDPRR 98 (112)
T ss_pred ECCchHHHHhHHhhChhhh---hcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC-CCCCcccccccCCeEEeCCHHH
Confidence 3999999987766544432 25778888876433 3334443 34899986654 32221 223332 36788
Q ss_pred HHHHHHHhhCC
Q 026412 122 FVSFINEKCGT 132 (239)
Q Consensus 122 l~~~l~~~~~~ 132 (239)
|..++.+..|.
T Consensus 99 I~~~La~r~g~ 109 (112)
T PF11287_consen 99 ILRYLAERHGF 109 (112)
T ss_pred HHHHHHHHcCC
Confidence 88888776653
No 296
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=42.17 E-value=33 Score=24.49 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=16.4
Q ss_pred EEEEECCCChHHhhHhHHHHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEK 64 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~ 64 (239)
+..|+.|.|..|+.....+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 556889999999998766553
No 297
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=41.35 E-value=81 Score=19.60 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=29.3
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cchhHHHHcCCCCCCeEE
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGFPTLK 101 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~Pt~~ 101 (239)
..|+.+.|++|.+..-.+.... . .-.+....+|.. ..+++.+......+|++.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~--~--~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 55 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETG--L--GDDVELVLVNPWSDDESLLAVNPLGKIPALV 55 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhC--C--CCCcEEEEcCcccCChHHHHhCCCCCCCEEE
Confidence 3567888999998765444311 1 113445555533 234444444555689764
No 298
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=41.29 E-value=35 Score=20.85 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=16.9
Q ss_pred HHhhhcCCCcEEcChhhHHHHh
Q 026412 16 FFVSALADDVVVLTEDNFEKEV 37 (239)
Q Consensus 16 ~~~~~~~~~v~~l~~~~f~~~~ 37 (239)
++.+.+.+.+...|+.||-+-+
T Consensus 13 ~~~~~a~AQWvV~DP~NlAQ~I 34 (55)
T PF13605_consen 13 LLAGPARAQWVVTDPGNLAQNI 34 (55)
T ss_pred hcCCcceeEEEEeCchHHHHHH
Confidence 5566667889999999987655
No 299
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=40.45 E-value=10 Score=27.79 Aligned_cols=13 Identities=31% Similarity=0.874 Sum_probs=11.1
Q ss_pred CChHHhhHhHHHH
Q 026412 51 WCGHCKNLAPTYE 63 (239)
Q Consensus 51 wC~~C~~~~~~~~ 63 (239)
-||||++..|.+.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 4999999998764
No 300
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=40.40 E-value=11 Score=27.78 Aligned_cols=13 Identities=31% Similarity=0.859 Sum_probs=11.1
Q ss_pred CChHHhhHhHHHH
Q 026412 51 WCGHCKNLAPTYE 63 (239)
Q Consensus 51 wC~~C~~~~~~~~ 63 (239)
-||||++..|.+.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 4999999998764
No 301
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=40.22 E-value=31 Score=24.25 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=15.1
Q ss_pred EEEECCCChHHhhHhHHHH
Q 026412 45 VEFYAPWCGHCKNLAPTYE 63 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~ 63 (239)
..|+.|.|+.|++....++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~ 20 (112)
T cd03034 2 TIYHNPRCSKSRNALALLE 20 (112)
T ss_pred EEEECCCCHHHHHHHHHHH
Confidence 5688999999999765554
No 302
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=38.75 E-value=33 Score=24.19 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=16.1
Q ss_pred EEEECCCChHHhhHhHHHHH
Q 026412 45 VEFYAPWCGHCKNLAPTYEK 64 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~ 64 (239)
..|+.|.|+.|++....+++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED 21 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46889999999998766654
No 303
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=38.19 E-value=1.3e+02 Score=25.52 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=60.4
Q ss_pred CCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCC-CeEEEEEeCccchhHHHHcCC--CCCCe
Q 026412 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKYKDLAEKYGV--SGFPT 99 (239)
Q Consensus 23 ~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~-~v~~~~vd~~~~~~l~~~~~i--~~~Pt 99 (239)
.-|.+++-+|-+++...+.|.+|.|+.+.-....+. .-..+++++..+. .+.+...|++.-..-...+|- ...|.
T Consensus 210 pLVREiTFeN~EELtEEGlPflILf~~kdD~~s~k~--F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DLPv 287 (375)
T KOG0912|consen 210 PLVREITFENAEELTEEGLPFLILFRKKDDKESEKI--FKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDLPV 287 (375)
T ss_pred hhhhhhhhccHHHHhhcCCceEEEEecCCcccHHHH--HHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccCcE
Confidence 346778888889999999999999998876433222 2344556655443 367777777643333444442 24666
Q ss_pred EEE--------EeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412 100 LKF--------FPKGNKDGEEYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 100 ~~~--------~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 130 (239)
+.+ |+.+ .....+..+.+|+.+..
T Consensus 288 iaIDsF~Hmylfp~f-------~di~~pGkLkqFv~DL~ 319 (375)
T KOG0912|consen 288 IAIDSFRHMYLFPDF-------NDINIPGKLKQFVADLH 319 (375)
T ss_pred EEeeccceeeecCch-------hhhcCccHHHHHHHHHh
Confidence 544 3332 22234557888887653
No 304
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=36.59 E-value=65 Score=25.24 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=25.3
Q ss_pred hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412 87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126 (239)
Q Consensus 87 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l 126 (239)
.-+.+.||.|+|++++-.+++ ....|-|.-..+.+.+++
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~-~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKG-KTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCC-CccceecCCcHHHHHHHh
Confidence 445677999999987743322 234677876666666554
No 305
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=36.51 E-value=1.4e+02 Score=20.27 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=11.4
Q ss_pred CeEEEEEeCccchhHH
Q 026412 74 DVVVANLDADKYKDLA 89 (239)
Q Consensus 74 ~v~~~~vd~~~~~~l~ 89 (239)
++.+-.+|++.+++..
T Consensus 30 ~I~f~eiDI~~d~~~r 45 (92)
T cd03030 30 KIEFEEVDISMNEENR 45 (92)
T ss_pred CCceEEEecCCCHHHH
Confidence 5888899988655433
No 306
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=36.04 E-value=2.1e+02 Score=22.44 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=51.9
Q ss_pred CCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHHH
Q 026412 40 DRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLAE 90 (239)
Q Consensus 40 ~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~~ 90 (239)
++.+++.|| +..-+-|--....+.+...+|+.. ++.+..+.+|. ..++++
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~-g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~ 111 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR-GVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIAR 111 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc-CCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHH
Confidence 377777776 344444545666677777777643 46666665542 347888
Q ss_pred HcCCCC------CCeEEEEeCCCcCc--ccc--CCCCCHHHHHHHHHHh
Q 026412 91 KYGVSG------FPTLKFFPKGNKDG--EEY--GGGRDLEDFVSFINEK 129 (239)
Q Consensus 91 ~~~i~~------~Pt~~~~~~g~~~~--~~~--~g~~~~~~l~~~l~~~ 129 (239)
.||+-. +=.+++.++.+... ..| .=+|+.+++..-++..
T Consensus 112 ~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 112 AYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred HcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 888752 22244555554321 222 2258888888777653
No 307
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=36.03 E-value=48 Score=23.21 Aligned_cols=16 Identities=44% Similarity=0.818 Sum_probs=13.9
Q ss_pred hhHHHHcCCCCCCeEE
Q 026412 86 KDLAEKYGVSGFPTLK 101 (239)
Q Consensus 86 ~~l~~~~~i~~~Pt~~ 101 (239)
.+++++++++.||.++
T Consensus 83 ddLa~rL~l~hYPvLi 98 (105)
T TIGR03765 83 DDLAERLGLRHYPVLI 98 (105)
T ss_pred HHHHHHhCCCcccEEE
Confidence 4899999999999864
No 308
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=35.63 E-value=49 Score=19.55 Aligned_cols=7 Identities=0% Similarity=-0.126 Sum_probs=3.0
Q ss_pred ChhHHHH
Q 026412 1 MERYQIW 7 (239)
Q Consensus 1 Mk~~~~~ 7 (239)
||+.+.+
T Consensus 2 mKk~i~~ 8 (48)
T PRK10081 2 VKKTIAA 8 (48)
T ss_pred hHHHHHH
Confidence 4444433
No 309
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=35.29 E-value=1e+02 Score=18.56 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=8.9
Q ss_pred cCCCcEEEEEECC
Q 026412 38 GQDRGALVEFYAP 50 (239)
Q Consensus 38 ~~~k~vlV~F~a~ 50 (239)
.....+.|.|+.+
T Consensus 37 ~edQdv~ISf~~~ 49 (52)
T PF00879_consen 37 AEDQDVSISFAGD 49 (52)
T ss_pred ccCCcEEEEecCC
Confidence 4456788888754
No 310
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=34.21 E-value=1.8e+02 Score=22.23 Aligned_cols=96 Identities=15% Similarity=0.275 Sum_probs=61.3
Q ss_pred cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------ch----hHHHHc
Q 026412 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------YK----DLAEKY 92 (239)
Q Consensus 25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~~----~l~~~~ 92 (239)
+..++.+.+.=-.-+++.++|.=-|+.|+.-..--..+..+.+.|+.+ .+.+...-|.+ +. .++.+|
T Consensus 19 ~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~-Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~ 97 (171)
T KOG1651|consen 19 AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ-GLEILAFPCNQFGNQEPGSNEEILNFVKVRY 97 (171)
T ss_pred EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC-CeEEEEeccccccCcCCCCcHHHHHHHHhcc
Confidence 444544433322346788888888999999886777899999999755 58888888762 22 244566
Q ss_pred CCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412 93 GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 93 ~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
+.. +|. |.+- .-.|. .++.+.+|+++..+
T Consensus 98 ~~~-f~i---f~Ki-----dVNG~-~~~PlykfLK~~~~ 126 (171)
T KOG1651|consen 98 GAE-FPI---FQKI-----DVNGD-NADPLYKFLKKVKG 126 (171)
T ss_pred CCC-Ccc---EeEE-----ecCCC-CCchHHHHHhhcCC
Confidence 664 443 4321 12232 66777788876554
No 311
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=33.86 E-value=3e+02 Score=25.59 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhhCCCCCCCCCcccccchhhhhhHHHHHHHhccchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhh
Q 026412 118 DLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNY 197 (239)
Q Consensus 118 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~ 197 (239)
....+++|+.+.-...|.-.|.... ... ++.|+ |++++.....+-...-.-|.-|+.|-+++
T Consensus 337 ~e~~~v~fl~~fkp~pr~y~g~~~~----~~~----lk~fl----------fee~~~lv~tli~lklaiand~veit~~l 398 (727)
T PF05642_consen 337 RERFIVQFLGDFKPTPRRYEGDRTN----VEK----LKKFL----------FEELKSLVNTLINLKLAIANDFVEITEKL 398 (727)
T ss_pred hhHHHHHHHHhcCCCCeeccCCCcc----HHH----HHHHH----------HHHHHHHHHHHHHHHHHHhhhHHHHhhhh
Confidence 3556777877766655544443222 222 23332 33333333322212223456799999998
Q ss_pred hhCCCCchHHHHHHHHHHHhccCChhhhhHHHHhhhhhccc
Q 026412 198 MDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238 (239)
Q Consensus 198 ~~~~~~~~~~e~~rl~~~l~~~~~~~~~~~~~~r~nil~~f 238 (239)
-.+..+|+. || ++|++ ...+.-+.-.|||+-|
T Consensus 399 ~kn~~~~~~----rl-kll~g----~~~~~r~~vanv~kgf 430 (727)
T PF05642_consen 399 KKNNKDHVP----RL-KLLKG----VEFTKRKSVANVLKGF 430 (727)
T ss_pred ccccccchh----hh-hhhcc----cccchhHHHHHHHhcc
Confidence 777777765 33 34433 1223334456666655
No 312
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=33.12 E-value=2e+02 Score=21.23 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=44.3
Q ss_pred cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCC-CeEEEEeCC
Q 026412 38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF-PTLKFFPKG 106 (239)
Q Consensus 38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~-Pt~~~~~~g 106 (239)
..+++-.|.+|.--|+.|-.....+.+. .....+.++.+..+....+.+..++..- +-.+.+..+
T Consensus 4 ~~~~p~~vvlyDG~C~lC~~~vrfLi~~----D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~ 69 (137)
T COG3011 4 QMKKPDLVVLYDGVCPLCDGWVRFLIRR----DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEA 69 (137)
T ss_pred CCCCCCEEEEECCcchhHHHHHHHHHHh----ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecC
Confidence 3467788999999999999954443332 2235788988888877777888877632 444455444
No 313
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=32.21 E-value=1.1e+02 Score=19.09 Aligned_cols=69 Identities=16% Similarity=0.014 Sum_probs=36.9
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-chhHHHHcCC-CCCCeEEEEeCCCcCccccCCCCCHHHH
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGV-SGFPTLKFFPKGNKDGEEYGGGRDLEDF 122 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~~l 122 (239)
..++.+.|++|.+..-.+....- .+....++... .+++.+.... ..+|++.. +| .. -.....+
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl------~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~-~~------l~eS~aI 66 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGV------PYEYVEEDLGNKSELLLASNPVHKKIPVLLH--NG-KP------ICESLII 66 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCC------CCEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CC-EE------eehHHHH
Confidence 35667899999998655544322 23344455432 2333333332 57898742 33 21 2345667
Q ss_pred HHHHHH
Q 026412 123 VSFINE 128 (239)
Q Consensus 123 ~~~l~~ 128 (239)
.+||.+
T Consensus 67 ~~yL~~ 72 (74)
T cd03058 67 VEYIDE 72 (74)
T ss_pred HHHHHh
Confidence 777764
No 314
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=31.92 E-value=56 Score=21.92 Aligned_cols=22 Identities=14% Similarity=-0.010 Sum_probs=10.9
Q ss_pred ChhHHHHHHHHHHHHHHhhhcC
Q 026412 1 MERYQIWLALGTLTLFFVSALA 22 (239)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~ 22 (239)
||+.+++..+++.++++++|+.
T Consensus 1 mk~klll~aviLs~~LLaGCAs 22 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVN 22 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCC
Confidence 7766554444443444444443
No 315
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=1.3e+02 Score=20.91 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=37.7
Q ss_pred HHHHhcCCCcEEEEEE---CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCC-CCCCeE-EEEeCC
Q 026412 33 FEKEVGQDRGALVEFY---APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV-SGFPTL-KFFPKG 106 (239)
Q Consensus 33 f~~~~~~~k~vlV~F~---a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i-~~~Pt~-~~~~~g 106 (239)
.++.+++++.++-.=. .|-|+++.+....+... . -+.++.||+-.++++.+...- ..+||+ =+|-+|
T Consensus 8 I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~----g---~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 8 IQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC----G---VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred HHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc----C---CcceeEEeeccCHHHHhccHhhcCCCCCceeeECC
Confidence 4445544443333323 36688777765444432 1 267889998878887665432 346665 245455
No 316
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=30.84 E-value=71 Score=23.73 Aligned_cols=16 Identities=44% Similarity=0.802 Sum_probs=14.0
Q ss_pred hhHHHHcCCCCCCeEE
Q 026412 86 KDLAEKYGVSGFPTLK 101 (239)
Q Consensus 86 ~~l~~~~~i~~~Pt~~ 101 (239)
.+++++++++.||.++
T Consensus 121 ddLA~rL~l~HYPvLI 136 (142)
T PF11072_consen 121 DDLARRLGLSHYPVLI 136 (142)
T ss_pred HHHHHHhCCCcccEEe
Confidence 4899999999999864
No 317
>PRK10598 lipoprotein; Provisional
Probab=30.82 E-value=75 Score=24.78 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHHHHHHhhhcCCCcEEcChhhHHHHhc
Q 026412 1 MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVG 38 (239)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~ 38 (239)
||++++. +++++++++++|.+.....+++...++-+.
T Consensus 1 mk~~~~~-~~~~~~~llsGC~sl~~ysISE~Ein~yL~ 37 (186)
T PRK10598 1 MKKFLFA-AALLVSGLLVGCNQLTQYTISEQEINQYLA 37 (186)
T ss_pred CchHHHH-HHHHHHHHHhcccccCceeecHHHHHHHHH
Confidence 7765432 344444555666655668888888888773
No 318
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=30.31 E-value=71 Score=21.00 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=20.3
Q ss_pred CCCeEEEEeCCCcCcccc-CCCCCHHHHHHHHHHh
Q 026412 96 GFPTLKFFPKGNKDGEEY-GGGRDLEDFVSFINEK 129 (239)
Q Consensus 96 ~~Pt~~~~~~g~~~~~~~-~g~~~~~~l~~~l~~~ 129 (239)
.-|++++++..|+...+. ....+.+++.+|+.+.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 469999998776544333 2456999999999875
No 319
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.18 E-value=85 Score=23.64 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=34.3
Q ss_pred hhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCC
Q 026412 30 EDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLED 73 (239)
Q Consensus 30 ~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~ 73 (239)
.+-|..+. -.+...+|..|.-.|.+.-.-.|+|-.--+.|.++.
T Consensus 66 qerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~k 112 (213)
T KOG0095|consen 66 QERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNK 112 (213)
T ss_pred hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc
Confidence 34566655 346778999999999999999999988888887544
No 320
>PRK09810 entericidin A; Provisional
Probab=29.91 E-value=70 Score=18.24 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.5
Q ss_pred ChhHHH
Q 026412 1 MERYQI 6 (239)
Q Consensus 1 Mk~~~~ 6 (239)
||+.+.
T Consensus 2 Mkk~~~ 7 (41)
T PRK09810 2 MKRLIV 7 (41)
T ss_pred hHHHHH
Confidence 444433
No 321
>PRK10853 putative reductase; Provisional
Probab=28.75 E-value=67 Score=22.87 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=16.1
Q ss_pred EEEEECCCChHHhhHhHHHHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEK 64 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~ 64 (239)
+..|+.|.|..|++....+++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA 22 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH
Confidence 456778999999998766653
No 322
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=28.22 E-value=1.3e+02 Score=23.51 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=45.9
Q ss_pred CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412 41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 119 (239)
Q Consensus 41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 119 (239)
...+..|+.++|+.|.+..=.+.+.. -.+.+..||..+. +++.+......+|++. .+| .. -...
T Consensus 8 ~~~~~Ly~~~~s~~~~rv~~~L~e~g------l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g-~~------l~ES 72 (211)
T PRK09481 8 RSVMTLFSGPTDIYSHQVRIVLAEKG------VSVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRE-LT------LYES 72 (211)
T ss_pred CCeeEEeCCCCChhHHHHHHHHHHCC------CCCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECC-EE------eeCH
Confidence 34466677788999999875554432 1355666665432 3444444445699985 233 11 1355
Q ss_pred HHHHHHHHHhhC
Q 026412 120 EDFVSFINEKCG 131 (239)
Q Consensus 120 ~~l~~~l~~~~~ 131 (239)
..|..||.+..+
T Consensus 73 ~AIl~YL~~~~~ 84 (211)
T PRK09481 73 RIIMEYLDERFP 84 (211)
T ss_pred HHHHHHHHHhCC
Confidence 688899988765
No 323
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=27.99 E-value=3e+02 Score=21.71 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=44.8
Q ss_pred EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEE--EeCccc----------------hhHHHHcCCCC--CCeEEEEe
Q 026412 45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN--LDADKY----------------KDLAEKYGVSG--FPTLKFFP 104 (239)
Q Consensus 45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~--vd~~~~----------------~~l~~~~~i~~--~Pt~~~~~ 104 (239)
=.|++..|..|-.....+.+++.. .+|.... ||..+. ...+..++.++ +|.+ +-
T Consensus 3 ELFTSQGCsSCPpAD~~L~~l~~~----~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~--vV 76 (202)
T PF06764_consen 3 ELFTSQGCSSCPPADRLLSELAAR----PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQV--VV 76 (202)
T ss_dssp EEEE-TT-TT-HHHHHHHHHHHHH----TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEE--EE
T ss_pred eEecCCCCCCCcHHHHHHHHhhcC----CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeE--EE
Confidence 358899999999999999999988 2455544 454332 24555666664 6765 44
Q ss_pred CCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412 105 KGNKDGEEYGGGRDLEDFVSFINEKCGT 132 (239)
Q Consensus 105 ~g~~~~~~~~g~~~~~~l~~~l~~~~~~ 132 (239)
+|. ......+...+..-|.+....
T Consensus 77 nG~----~~~~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 77 NGR----EHRVGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp TTT----EEEETT-HHHHHHHHHHHHHT
T ss_pred CCe----eeeeccCHHHHHHHHHHhhcc
Confidence 552 223345777777777766543
No 324
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.79 E-value=92 Score=23.89 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.8
Q ss_pred EEECCCChHHhhHhHHHHHHHHHcc
Q 026412 46 EFYAPWCGHCKNLAPTYEKVAAAFT 70 (239)
Q Consensus 46 ~F~a~wC~~C~~~~~~~~~~a~~~~ 70 (239)
.|+.+-||+|--..+.+.++.+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4667889999999999999999885
No 325
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.52 E-value=1.1e+02 Score=21.67 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=9.7
Q ss_pred HHHhccCChhhhhHHHHhhhhh
Q 026412 214 RMLDKSISAAKADEFVLKKNIL 235 (239)
Q Consensus 214 ~~l~~~~~~~~~~~~~~r~nil 235 (239)
-+..+.++-.++.++++.+|.|
T Consensus 18 yl~n~dl~~~~~k~LqkeLn~L 39 (126)
T PF10654_consen 18 YLVNNDLSFSKRKELQKELNQL 39 (126)
T ss_pred HHHhCCCChHHHHHHHHHHHHH
Confidence 3333334444444444444443
No 326
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=27.51 E-value=2.4e+02 Score=20.36 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=30.4
Q ss_pred CCeEEEEEeCccch----------hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412 73 DDVVVANLDADKYK----------DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129 (239)
Q Consensus 73 ~~v~~~~vd~~~~~----------~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 129 (239)
..+.+.+.|..+++ ++.++-|...+|.+++ +| .+.......+.++|.+|+.-.
T Consensus 39 ~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dG--eiv~~G~YPt~eEl~~~~~i~ 101 (123)
T PF06953_consen 39 QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DG--EIVKTGRYPTNEELAEWLGIS 101 (123)
T ss_dssp TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TT--EEEEESS---HHHHHHHHT--
T ss_pred CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CC--EEEEecCCCCHHHHHHHhCCC
Confidence 36889898887654 3445668889997633 44 344445567999999998543
No 327
>PRK10026 arsenate reductase; Provisional
Probab=27.23 E-value=82 Score=23.35 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=16.4
Q ss_pred EEEEECCCChHHhhHhHHHHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEK 64 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~ 64 (239)
+..|+.|.|..|++....+++
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN 24 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456788999999998766553
No 328
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.99 E-value=56 Score=25.78 Aligned_cols=27 Identities=33% Similarity=0.635 Sum_probs=23.8
Q ss_pred EEEEEECCCChHHhhHhHHHHHHHHHc
Q 026412 43 ALVEFYAPWCGHCKNLAPTYEKVAAAF 69 (239)
Q Consensus 43 vlV~F~a~wC~~C~~~~~~~~~~a~~~ 69 (239)
.+.+.+.|-|++|-...|.++++....
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhcC
Confidence 467788999999999999999998874
No 329
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=26.31 E-value=1.2e+02 Score=24.06 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=4.4
Q ss_pred ChhHHHHH
Q 026412 1 MERYQIWL 8 (239)
Q Consensus 1 Mk~~~~~~ 8 (239)
||++++++
T Consensus 1 mk~i~~l~ 8 (216)
T PF11153_consen 1 MKKILLLL 8 (216)
T ss_pred ChHHHHHH
Confidence 77754433
No 330
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=25.70 E-value=1.2e+02 Score=18.25 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=9.2
Q ss_pred ChhHHHHHHHHHHHHHHhhhcCC
Q 026412 1 MERYQIWLALGTLTLFFVSALAD 23 (239)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~ 23 (239)
|-+.+.++++++.+..+.++.++
T Consensus 1 mlk~lkf~lv~imlaqllsctps 23 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLAQLLSCTPS 23 (60)
T ss_pred ChhHHHHHHHHHHHHHHHcCCCC
Confidence 44444444433333333344433
No 331
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=25.39 E-value=1e+02 Score=22.26 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=16.2
Q ss_pred EEEEECCCChHHhhHhHHHHH
Q 026412 44 LVEFYAPWCGHCKNLAPTYEK 64 (239)
Q Consensus 44 lV~F~a~wC~~C~~~~~~~~~ 64 (239)
+..|+-|.|..|++....+++
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456788999999998666553
No 332
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=24.68 E-value=60 Score=23.19 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=12.6
Q ss_pred ChhHHHHHHHHHHHHHHhhhcCCCcEEcC
Q 026412 1 MERYQIWLALGTLTLFFVSALADDVVVLT 29 (239)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~v~~l~ 29 (239)
|+++++ +++.+++++++.....+...+
T Consensus 1 Mrk~~~--~~l~~~lLvGCsS~~~i~~~~ 27 (123)
T COG5633 1 MRKLCL--LSLALLLLVGCSSHQEILVND 27 (123)
T ss_pred CceehH--HHHHHHHhhccCCCCCccccc
Confidence 887665 233333444444444443333
No 333
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=24.46 E-value=1.8e+02 Score=18.16 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=29.6
Q ss_pred EEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc---cchhHHHHcCCCCCCeEEE
Q 026412 46 EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---KYKDLAEKYGVSGFPTLKF 102 (239)
Q Consensus 46 ~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~---~~~~l~~~~~i~~~Pt~~~ 102 (239)
.|+.+.|+.|.+..-.+.... -.+....+|.. ..+++.+......+|++..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~g------i~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~ 56 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNG------LDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG 56 (75)
T ss_pred EecCCCCccHHHHHHHHHHcC------CceEEEecccccccCCHHHHHhCCCCCCCEEEc
Confidence 466778888887765555331 13555566553 2344444445557998743
No 334
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.14 E-value=2.5e+02 Score=19.45 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=32.7
Q ss_pred cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC
Q 026412 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 95 (239)
Q Consensus 28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~ 95 (239)
++.+++.+.+.+.++-+|-+...--.+........+.+.+..+.+..+.++.--....++..+..|++
T Consensus 37 ~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D 104 (119)
T cd02067 37 VPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVD 104 (119)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCe
Confidence 55667777775555545444433222223333333444343221223445544444445666776665
No 335
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=23.97 E-value=2.7e+02 Score=19.80 Aligned_cols=54 Identities=9% Similarity=0.231 Sum_probs=35.2
Q ss_pred CCCeEEEEEeC---ccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412 72 EDDVVVANLDA---DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131 (239)
Q Consensus 72 ~~~v~~~~vd~---~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 131 (239)
++++.++-++- +.-+++-++|. ...|+++..++. . ..| ....+.+.++++...|
T Consensus 58 ~~digIIlIte~~a~~i~~~I~~~~-~~~PaIieIP~k-~--~~y--~~~~d~i~~~~~~~~~ 114 (115)
T TIGR01101 58 RDDIAIILINQHIAEMIRHAVDAHT-RSIPAVLEIPSK-D--HPY--DASKDSILRRARGMFN 114 (115)
T ss_pred cCCeEEEEEcHHHHHHhHHHHHhcC-CcCCEEEEECCC-C--CCC--CCcccHHHHHHHHHcC
Confidence 34677777753 34456677888 889999999763 2 222 2456777777776654
No 336
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=23.68 E-value=1.3e+02 Score=23.09 Aligned_cols=61 Identities=25% Similarity=0.317 Sum_probs=28.8
Q ss_pred cCCCcEEEEEE-CCCChHHhhH----hHHHHHHHHHccCCCCeEEEEEeCcc---chhHHHHcCCCCCCeEEEEeCC
Q 026412 38 GQDRGALVEFY-APWCGHCKNL----APTYEKVAAAFTLEDDVVVANLDADK---YKDLAEKYGVSGFPTLKFFPKG 106 (239)
Q Consensus 38 ~~~k~vlV~F~-a~wC~~C~~~----~~~~~~~a~~~~~~~~v~~~~vd~~~---~~~l~~~~~i~~~Pt~~~~~~g 106 (239)
..+++++++|| +..-|-|-+. +..|+++... ...+..+..|+ +..++.++ .+|.-++-+.+
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka-----~aeV~GlS~D~s~sqKaF~sKq---nlPYhLLSDpk 156 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA-----GAEVIGLSGDDSASQKAFASKQ---NLPYHLLSDPK 156 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccccccccHHHHhhc-----CceEEeeccCchHHHHHhhhhc---cCCeeeecCcc
Confidence 45668888888 2333344443 3444444433 23344454442 33333333 34554444444
No 337
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=23.67 E-value=2.3e+02 Score=24.41 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=40.3
Q ss_pred eEEEEEeCccchhHHHHcCCCCCCeEEEEeCC-CcCccccCCCCCHHHHHHHHHHhh
Q 026412 75 VVVANLDADKYKDLAEKYGVSGFPTLKFFPKG-NKDGEEYGGGRDLEDFVSFINEKC 130 (239)
Q Consensus 75 v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~~~g~~~~~~l~~~l~~~~ 130 (239)
...+..|......+..-|.+...|.+.++++- |+...+..|...+++|+.-+++..
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence 34445555567788889999999998888643 345566678778888887777654
No 338
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=23.66 E-value=2e+02 Score=23.33 Aligned_cols=6 Identities=17% Similarity=0.313 Sum_probs=3.5
Q ss_pred ChhHHH
Q 026412 1 MERYQI 6 (239)
Q Consensus 1 Mk~~~~ 6 (239)
||+..+
T Consensus 1 ~~~~~~ 6 (237)
T TIGR01672 1 MKKITQ 6 (237)
T ss_pred CchHHH
Confidence 776543
No 339
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=23.62 E-value=1.6e+02 Score=23.62 Aligned_cols=60 Identities=15% Similarity=0.070 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHHHHHHhhhcCCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHH
Q 026412 1 MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVA 66 (239)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a 66 (239)
||++++.++. ++++++|........ +|...- .+.+-++|.=-...++.-+.-.-.+..+.
T Consensus 1 mk~l~~~l~~---~l~LsgCa~~~~~~~---dy~a~~~~kPrSILVlPp~N~S~dV~A~~~~ls~~~ 61 (215)
T PF05643_consen 1 MKKLILGLAA---ALLLSGCATTKPPPY---DYTAFKESKPRSILVLPPVNESPDVKAAYYVLSTVT 61 (215)
T ss_pred ChhHHHHHHH---HHHHhhccCCCCccc---cHHHHhcCCCceEEEeCCCCCCcccchHHHHHHHHH
Confidence 8886544322 222334332222222 344443 33444666554444544443333333333
No 340
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=23.41 E-value=62 Score=28.37 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhhcCCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhH
Q 026412 9 ALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88 (239)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l 88 (239)
.+-++-.|+.-|......++...+|...+.. ++-. ...-.-|.++.-.+.++++.++.++++... ..+
T Consensus 65 AlTLlda~~~NCg~~~r~EVsSr~F~~el~a---l~~~--~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi-------~~l 132 (462)
T KOG2199|consen 65 ALTLLDACVANCGKRFRLEVSSRDFTTELRA---LIES--KAHPKVCEKMRDLVKEWSEEFKKDPSLSLI-------SAL 132 (462)
T ss_pred HHHHHHHHHHhcchHHHHHHhhhhHHHHHHH---HHhh--cccHHHHHHHHHHHHHHHHHhccCcchhHH-------HHH
Confidence 3334445555666677788999999777610 0000 223356889999999999998876655332 344
Q ss_pred HHHcCCCCCC
Q 026412 89 AEKYGVSGFP 98 (239)
Q Consensus 89 ~~~~~i~~~P 98 (239)
+++..-.+++
T Consensus 133 ~~klk~~g~~ 142 (462)
T KOG2199|consen 133 YKKLKEEGIT 142 (462)
T ss_pred HHHHHHcCCC
Confidence 5444444444
No 341
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=23.36 E-value=48 Score=24.37 Aligned_cols=13 Identities=23% Similarity=0.859 Sum_probs=9.1
Q ss_pred CCChHHhhHhHHH
Q 026412 50 PWCGHCKNLAPTY 62 (239)
Q Consensus 50 ~wC~~C~~~~~~~ 62 (239)
+=|++|+++..+|
T Consensus 86 sPCG~CRQ~i~Ef 98 (134)
T COG0295 86 SPCGACRQVLAEF 98 (134)
T ss_pred CCcHHHHHHHHHh
Confidence 3499999985433
No 342
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=23.28 E-value=48 Score=23.63 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.3
Q ss_pred CCCCeEEEEeCCCcCccccCCC
Q 026412 95 SGFPTLKFFPKGNKDGEEYGGG 116 (239)
Q Consensus 95 ~~~Pt~~~~~~g~~~~~~~~g~ 116 (239)
+-||++++.++|.+.-++|..+
T Consensus 43 R~Ypv~lV~pDGSTI~Iry~EP 64 (116)
T PF09776_consen 43 RLYPVLLVRPDGSTINIRYHEP 64 (116)
T ss_pred hhccEEEEecCCCEEEEeccCh
Confidence 4699999999998877788765
No 343
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=23.06 E-value=84 Score=14.06 Aligned_cols=8 Identities=38% Similarity=0.800 Sum_probs=5.5
Q ss_pred HHHHHHHH
Q 026412 207 KEIDRLQR 214 (239)
Q Consensus 207 ~e~~rl~~ 214 (239)
.|++||++
T Consensus 3 aeLerLkn 10 (17)
T PF12107_consen 3 AELERLKN 10 (17)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 47777765
No 344
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=22.94 E-value=79 Score=21.93 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=34.7
Q ss_pred EECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-------hhHHHHcCCCCCCeEEEEeCCCcCccccC----C
Q 026412 47 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------KDLAEKYGVSGFPTLKFFPKGNKDGEEYG----G 115 (239)
Q Consensus 47 F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~----g 115 (239)
|+.|.|..|++....+++- ++.+-.+|..+. .++.+..+.. +-. +++..+....... .
T Consensus 1 Y~~~~C~t~rka~~~L~~~--------gi~~~~~d~~k~p~s~~el~~~l~~~~~~-~~~--lin~~~~~~k~l~~~~~~ 69 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN--------GIEYEFIDYKKEPLSREELRELLSKLGNG-PDD--LINTRSKTYKELGKLKKD 69 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT--------T--EEEEETTTS---HHHHHHHHHHHTSS-GGG--GB-TTSHHHHHTTHHHCT
T ss_pred CcCCCCHHHHHHHHHHHHc--------CCCeEeehhhhCCCCHHHHHHHHHHhccc-HHH--HhcCccchHhhhhhhhhh
Confidence 5789999999987666632 355556666432 2444555532 111 2332222111111 3
Q ss_pred CCCHHHHHHHHHHh
Q 026412 116 GRDLEDFVSFINEK 129 (239)
Q Consensus 116 ~~~~~~l~~~l~~~ 129 (239)
..+.+++.+.+.+.
T Consensus 70 ~~s~~e~i~~l~~~ 83 (110)
T PF03960_consen 70 DLSDEELIELLLEN 83 (110)
T ss_dssp TSBHHHHHHHHHHS
T ss_pred hhhhHHHHHHHHhC
Confidence 45666777666654
No 345
>PRK13791 lysozyme inhibitor; Provisional
Probab=22.62 E-value=1.4e+02 Score=21.19 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=6.7
Q ss_pred cCCCcEEEEEECC
Q 026412 38 GQDRGALVEFYAP 50 (239)
Q Consensus 38 ~~~k~vlV~F~a~ 50 (239)
..++.+-|.|+.+
T Consensus 37 ~~~~~l~V~y~n~ 49 (113)
T PRK13791 37 NDNQVLEVIYVNT 49 (113)
T ss_pred CCCCeEEEEEeCC
Confidence 3445556666543
No 346
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=22.57 E-value=3.8e+02 Score=22.31 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=27.2
Q ss_pred hHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCC-CCCCeEEEE
Q 026412 53 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV-SGFPTLKFF 103 (239)
Q Consensus 53 ~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i-~~~Pt~~~~ 103 (239)
+.-..+.....++...+....+.....||.|..-.+--++.= ..+|++-+.
T Consensus 56 G~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~g 107 (288)
T COG4814 56 GTASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFG 107 (288)
T ss_pred CChhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEE
Confidence 334455556677776664334556667777642222222211 258998664
No 347
>PRK11443 lipoprotein; Provisional
Probab=22.51 E-value=63 Score=23.37 Aligned_cols=6 Identities=17% Similarity=0.589 Sum_probs=3.4
Q ss_pred ChhHHH
Q 026412 1 MERYQI 6 (239)
Q Consensus 1 Mk~~~~ 6 (239)
||++++
T Consensus 1 Mk~~~~ 6 (124)
T PRK11443 1 MKKFIA 6 (124)
T ss_pred ChHHHH
Confidence 776443
No 348
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.48 E-value=86 Score=22.12 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=5.2
Q ss_pred ChhHHHHH
Q 026412 1 MERYQIWL 8 (239)
Q Consensus 1 Mk~~~~~~ 8 (239)
||++++++
T Consensus 1 MKk~~ll~ 8 (114)
T PF11777_consen 1 MKKIILLA 8 (114)
T ss_pred CchHHHHH
Confidence 88865544
No 349
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=21.99 E-value=1.2e+02 Score=22.19 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhcc-CChhhhhHHHHhhhhhcccC
Q 026412 205 AKKEIDRLQRMLDKS-ISAAKADEFVLKKNILSTFT 239 (239)
Q Consensus 205 ~~~e~~rl~~~l~~~-~~~~~~~~~~~r~nil~~f~ 239 (239)
+..-...|+.++..+ .-.+++..+.+|+.|++.|.
T Consensus 41 v~~~~~~l~~ll~~~~~~l~~I~~~n~r~qvmnvF~ 76 (140)
T PF05290_consen 41 VKSLQMYLNELLSHSLKYLEKIKAINRRLQVMNVFL 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeec
Confidence 444566777777666 66777899999999999884
No 350
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=21.76 E-value=1.8e+02 Score=25.09 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=47.9
Q ss_pred CChHHhhHhHHHHHHH----HHccC-CCCeEEEEEeCccc-h--hHHHHcCCCC--CCeEEEEeCCCcCccccCCCCCHH
Q 026412 51 WCGHCKNLAPTYEKVA----AAFTL-EDDVVVANLDADKY-K--DLAEKYGVSG--FPTLKFFPKGNKDGEEYGGGRDLE 120 (239)
Q Consensus 51 wC~~C~~~~~~~~~~a----~~~~~-~~~v~~~~vd~~~~-~--~l~~~~~i~~--~Pt~~~~~~g~~~~~~~~g~~~~~ 120 (239)
.||.|-+..-.+.+.. +.+.. ...+.++-+.|--| + .--..+|+.+ -|...+|.+| +......+..-.+
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g-~~~~~~~~~~~~e 341 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKG-EIIKKLPEEDIVE 341 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECC-eEEEecChhhHHH
Confidence 3888877765544433 33322 23467777776522 1 2223566663 6888899887 5556677777777
Q ss_pred HHHHHHHHhh
Q 026412 121 DFVSFINEKC 130 (239)
Q Consensus 121 ~l~~~l~~~~ 130 (239)
+|...+.+..
T Consensus 342 el~~~i~~~~ 351 (361)
T COG0821 342 ELEALIEAYA 351 (361)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 351
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=21.74 E-value=97 Score=21.33 Aligned_cols=20 Identities=10% Similarity=0.090 Sum_probs=8.9
Q ss_pred ChhHHHHHHHHHHHHHHhhhc
Q 026412 1 MERYQIWLALGTLTLFFVSAL 21 (239)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~ 21 (239)
|+++++..+.+ .++++.+|.
T Consensus 1 M~k~l~sal~~-~~~L~~GCA 20 (96)
T PF11839_consen 1 MKKLLLSALAL-AALLLAGCA 20 (96)
T ss_pred CchHHHHHHHH-HHHHHhHcc
Confidence 77766433333 333444443
No 352
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.61 E-value=97 Score=23.69 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHHHHHhhhcCCCcEEcChhhHHHHhcCCCcEEEEEECC
Q 026412 1 MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAP 50 (239)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~k~vlV~F~a~ 50 (239)
|++...++++++.++....|....+..-+-.+=+..+...-..++.|.-.
T Consensus 1 m~~~~~~~~~~~~~~~~~~C~~P~v~~ssytT~Da~i~t~~afi~EFsl~ 50 (167)
T PF05404_consen 1 MKKIVALLALLVSFCAAETCENPEVTSSSYTTTDATISTQTAFIAEFSLK 50 (167)
T ss_pred ChhHHHHHHHHHHHhhccccCCCceeeeeeecCCceeEeeeEEEEEEEEE
Confidence 77653333332222222334445444433344445555666777888764
No 353
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=21.54 E-value=6.7e+02 Score=23.43 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=43.5
Q ss_pred HHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCC
Q 026412 62 YEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG 138 (239)
Q Consensus 62 ~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~ 138 (239)
++.+-..++. +++.+..+-++++..+.+ ++++..|+..+|++|...+. +....+.+.+.+.|.+.+|......+
T Consensus 204 ~~~~l~~l~~-~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l-~~~~~s~~~y~~~I~~~lg~~~~a~~ 277 (606)
T KOG1731|consen 204 WANLLNDLPS-KQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPL-WPSSSSRSAYVKKIDDLLGDKNEASG 277 (606)
T ss_pred HHHHHhhccC-CCcceEEEecchhccccc-cCCCCchhhhhhcCCccccc-ccccccHHHHHHHHHHHhcCccccCC
Confidence 3444444432 345454444444444555 88999999999999854332 33445565777777777665444333
No 354
>PF08971 GlgS: Glycogen synthesis protein; InterPro: IPR015065 Members of this protein are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them []. ; GO: 0005978 glycogen biosynthetic process; PDB: 1RRZ_A.
Probab=21.50 E-value=1e+02 Score=19.52 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHH--------HhccCChhhhhHHHHhhhh
Q 026412 203 DYAKKEIDRLQRM--------LDKSISAAKADEFVLKKNI 234 (239)
Q Consensus 203 ~~~~~e~~rl~~~--------l~~~~~~~~~~~~~~r~ni 234 (239)
||++.-++|++.. +.++|++++++.|..|++-
T Consensus 12 DFlAsS~ArMe~qgr~vd~~~I~gnM~ee~r~~F~~R~~~ 51 (66)
T PF08971_consen 12 DFLASSFARMEAQGRKVDVDAITGNMSEEQREWFCERYAH 51 (66)
T ss_dssp HHHHHHHHHHHHHT----HHHHHHH--TTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHhccCCHHHHHHHHHHHHH
Confidence 5555555555432 2345999999999999864
No 355
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=21.24 E-value=2.4e+02 Score=24.07 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHHHHHhh---hcCCC--cEEcChhhHHHHh-c------CCCcEEEEEECCCChHHhhHh
Q 026412 1 MERYQIWLALGTLTLFFVS---ALADD--VVVLTEDNFEKEV-G------QDRGALVEFYAPWCGHCKNLA 59 (239)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~---~~~~~--v~~l~~~~f~~~~-~------~~k~vlV~F~a~wC~~C~~~~ 59 (239)
|++++.+++.+++.+.+.+ +..+. ++.+..+++-... . -+-+++ ..||-..-....
T Consensus 1 Mrr~l~lll~~~l~l~s~~av~A~~~~~~~VIlvsDn~aD~~lA~~iaellNA~Vl---ttpwg~ynes~~ 68 (337)
T COG2247 1 MRRLLMLLLASLLALSSPPAVSAQSQNTTVVILVSDNEADLLLALPIAELLNAPVL---TTPWGIYNESVL 68 (337)
T ss_pred CccHHHHHHHHHHHHhcchhhhhhhcCceEEEEecchHHHHHHhhHHHHHhCCeeE---ecCcccccHHHH
Confidence 8877665544444333222 23334 5666666665443 1 133444 788877655543
No 356
>PRK02922 glycogen synthesis protein GlgS; Provisional
Probab=20.99 E-value=1.9e+02 Score=18.32 Aligned_cols=34 Identities=9% Similarity=0.199 Sum_probs=24.7
Q ss_pred CCCchHHHHHHHHHH--------HhccCChhhhhHHHHhhhh
Q 026412 201 GSDYAKKEIDRLQRM--------LDKSISAAKADEFVLKKNI 234 (239)
Q Consensus 201 ~~~~~~~e~~rl~~~--------l~~~~~~~~~~~~~~r~ni 234 (239)
.-||++.-++|++.- +.++|+++.++.|..|+.-
T Consensus 11 ~~DFlAsS~A~Me~Qgr~Idvd~V~gnmsee~r~~F~eRla~ 52 (67)
T PRK02922 11 NFDFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAW 52 (67)
T ss_pred chhHHHHHHHHHHHcCCCccHHHHHhcCCHHHHHHHHHHHHH
Confidence 357777777776643 3455999999999998753
No 357
>PRK01381 Trp operon repressor; Provisional
Probab=20.58 E-value=1.1e+02 Score=21.13 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=19.7
Q ss_pred HHHHHHHHHhccCChhhhhHHHHhhhhhc
Q 026412 208 EIDRLQRMLDKSISAAKADEFVLKKNILS 236 (239)
Q Consensus 208 e~~rl~~~l~~~~~~~~~~~~~~r~nil~ 236 (239)
+.+++..++..=++|+.++.+..|.+|.+
T Consensus 21 ~~~~~~~~l~~llTp~Er~al~~R~~I~~ 49 (99)
T PRK01381 21 EEDLHLPLLTLLLTPDEREALGTRVRIVE 49 (99)
T ss_pred cHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34455566655577888888888887765
No 358
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=20.16 E-value=2.6e+02 Score=22.40 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=7.5
Q ss_pred CCeEEEEeCCC
Q 026412 97 FPTLKFFPKGN 107 (239)
Q Consensus 97 ~Pt~~~~~~g~ 107 (239)
-|++++.++|+
T Consensus 101 R~aiIlvkkgN 111 (252)
T COG4588 101 RPAIILVKKGN 111 (252)
T ss_pred eceEEEecCCC
Confidence 47777777763
No 359
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=20.14 E-value=1.3e+02 Score=22.84 Aligned_cols=25 Identities=8% Similarity=-0.112 Sum_probs=21.6
Q ss_pred EEECCCChHHhhHhHHHHHHHHHcc
Q 026412 46 EFYAPWCGHCKNLAPTYEKVAAAFT 70 (239)
Q Consensus 46 ~F~a~wC~~C~~~~~~~~~~a~~~~ 70 (239)
.|+.+-||+|--..+.++++...++
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 4667889999999999999988774
No 360
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=20.11 E-value=4.8e+02 Score=21.16 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=44.4
Q ss_pred CCcEEEEEECCCChHH-----------------hhHhHHHHHHHHHccC-CCCeEEEEEeCcc-----c-hhHHHHcCCC
Q 026412 40 DRGALVEFYAPWCGHC-----------------KNLAPTYEKVAAAFTL-EDDVVVANLDADK-----Y-KDLAEKYGVS 95 (239)
Q Consensus 40 ~k~vlV~F~a~wC~~C-----------------~~~~~~~~~~a~~~~~-~~~v~~~~vd~~~-----~-~~l~~~~~i~ 95 (239)
+.++-+..++|.|++. ..+...++++...|-. ...+.++-+|+.. . .++++.+.-.
T Consensus 112 ~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~ 191 (240)
T smart00053 112 PVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ 191 (240)
T ss_pred CcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc
Confidence 4568888899888653 2334456666655543 3457777777542 1 3678888888
Q ss_pred CCCeEEEEeCC
Q 026412 96 GFPTLKFFPKG 106 (239)
Q Consensus 96 ~~Pt~~~~~~g 106 (239)
+.|++.++.+-
T Consensus 192 ~~rti~ViTK~ 202 (240)
T smart00053 192 GERTIGVITKL 202 (240)
T ss_pred CCcEEEEEECC
Confidence 89999888654
Done!