BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026413
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X6X|A Chain A, Tailspike Protein Mutant D339n Of E.Coli Bacteriophage
Hk620 In Complex With Hexasaccharide
Length = 600
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 129 DNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGE 188
DN ++ L N HG++ D+ G ++ Q NG FG SY +V+ G+
Sbjct: 139 DNGDPASSGNLENCHIYGHGVV--DFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGD 196
Query: 189 VFWA 192
V WA
Sbjct: 197 VTWA 200
>pdb|2X6Y|A Chain A, Tailspike Protein Mutant D339a Of E.Coli Bacteriophage
Hk620 In Complex With Hexasaccharide
Length = 600
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 129 DNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGE 188
DN ++ L N HG++ D+ G ++ Q NG FG SY +V+ G+
Sbjct: 139 DNGDPASSGNLENCHIYGHGVV--DFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGD 196
Query: 189 VFWA 192
V WA
Sbjct: 197 VTWA 200
>pdb|2VJI|A Chain A, Tailspike Protein Of E.Coli Bacteriophage Hk620
pdb|2VJJ|A Chain A, Tailspike Protein Of E.Coli Bacteriophage Hk620 In Complex
With Hexasaccharide
pdb|2X85|A Chain A, Tailspike Protein Of E. Coli Bacteriophage Hk620 In
Complex With Hexasaccharide
Length = 600
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 129 DNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGE 188
DN ++ L N HG++ D+ G ++ Q NG FG SY +V+ G+
Sbjct: 139 DNGDPASSGNLENCHIYGHGVV--DFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGD 196
Query: 189 VFWA 192
V WA
Sbjct: 197 VTWA 200
>pdb|2X6W|A Chain A, Tailspike Protein Mutant E372q Of E.Coli Bacteriophage
Hk620 In Complex With Hexasaccharide
pdb|4AVZ|A Chain A, Tailspike Protein Mutant E372q Of E. Coli Bacteriophage
Hk620
Length = 600
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 129 DNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGE 188
DN ++ L N HG++ D+ G ++ Q NG FG SY +V+ G+
Sbjct: 139 DNGDPASSGNLENCHIYGHGVV--DFGGYEFGASSQLRNGVAFGRSYNCSVTGITFQNGD 196
Query: 189 VFWA 192
V WA
Sbjct: 197 VTWA 200
>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution
Length = 295
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 140 TNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSG 199
T++ ++ YK +++ +G FG S Q V+ L + W + +
Sbjct: 171 TSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTR 230
Query: 200 IGYAARYEND 209
G AA+Y+ D
Sbjct: 231 FGIAAKYQVD 240
>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles
Length = 291
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 154 YKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYEND 209
YK +++ +G FG S Q V+ L + W + + G AA+Y+ D
Sbjct: 173 YKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQID 228
>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel
Length = 294
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 154 YKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYEND 209
YK +++ +G FG S Q V+ L + W + + G AA+Y+ D
Sbjct: 176 YKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQID 231
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In Triclinic
Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 37 YEEIHREALMSLKPELFEGLRFDF------TKGLNQKFSLSHSVIMGPTE-IPSQSTETI 89
Y + EAL + P+LFEG +D+ G N ++LSH G E IP+ I
Sbjct: 982 YAGQYLEALKAKYPDLFEGKAYDYWYKNYANDGSNPYYTLSH----GDRESIPADV--AI 1035
Query: 90 KIPTAHYEFGANYIDPKLMLIGRVLTD 116
K +A Y G N + + G VL D
Sbjct: 1036 KQWSAKYMNGTNVLGNGM---GYVLKD 1059
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,500,114
Number of Sequences: 62578
Number of extensions: 307117
Number of successful extensions: 586
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 10
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)