Query 026413
Match_columns 239
No_of_seqs 106 out of 256
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:42:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00989 3a0801s07tom40 mitoc 100.0 4.9E-55 1.1E-59 363.6 19.9 149 31-192 1-161 (161)
2 cd07305 Porin3_Tom40 Transloca 100.0 4.2E-50 9.1E-55 361.1 26.6 190 31-232 1-201 (279)
3 KOG3296 Translocase of outer m 100.0 2.6E-44 5.6E-49 325.5 4.0 203 21-230 17-226 (308)
4 PF01459 Porin_3: Eukaryotic p 100.0 1.2E-34 2.6E-39 255.8 19.5 188 33-232 1-200 (273)
5 cd07303 Porin3 Eukaryotic pori 100.0 2.8E-32 6.2E-37 245.3 21.6 183 36-233 1-196 (274)
6 cd07305 Porin3_Tom40 Transloca 99.7 2.3E-15 4.9E-20 135.7 23.2 166 51-228 75-248 (279)
7 cd07306 Porin3_VDAC Voltage-de 99.2 2.9E-08 6.2E-13 89.4 24.1 134 95-229 106-244 (276)
8 cd07306 Porin3_VDAC Voltage-de 99.1 1.2E-07 2.7E-12 85.3 23.8 188 34-233 1-195 (276)
9 PF01459 Porin_3: Eukaryotic p 98.9 6E-07 1.3E-11 79.2 22.0 160 56-226 78-247 (273)
10 cd07303 Porin3 Eukaryotic pori 98.6 2.2E-05 4.7E-10 71.0 22.8 131 96-226 108-242 (274)
11 KOG3126 Porin/voltage-dependen 97.9 0.0015 3.2E-08 59.7 18.5 85 145-229 163-249 (281)
12 PF12519 DUF3722: Protein of u 97.1 0.0069 1.5E-07 54.7 11.7 123 106-228 84-245 (260)
13 KOG3296 Translocase of outer m 95.0 0.051 1.1E-06 50.3 5.7 98 116-214 162-263 (308)
14 KOG3126 Porin/voltage-dependen 70.3 73 0.0016 29.3 11.1 100 95-194 165-265 (281)
15 PRK10049 pgaA outer membrane p 46.2 1.2E+02 0.0026 31.3 9.0 149 53-208 563-730 (765)
16 PRK10716 long-chain fatty acid 45.8 2.2E+02 0.0047 27.4 10.3 33 161-193 279-311 (435)
17 TIGR01782 TonB-Xanth-Caul TonB 45.5 3.6E+02 0.0079 27.8 12.6 90 52-141 689-814 (845)
18 PRK09441 cytoplasmic alpha-amy 44.4 9.3 0.0002 37.1 0.7 41 27-67 201-241 (479)
19 PF02530 Porin_2: Porin subfam 44.2 2.8E+02 0.0061 26.1 10.8 85 119-208 279-370 (379)
20 PF10082 DUF2320: Uncharacteri 41.6 2E+02 0.0043 26.4 9.1 48 171-218 299-355 (381)
21 PF07642 DUF1597: Outer membra 41.3 2.8E+02 0.006 25.2 16.4 25 170-194 209-233 (344)
22 PLN02361 alpha-amylase 36.9 20 0.00043 34.4 1.7 42 27-68 147-188 (401)
23 PF11854 DUF3374: Protein of u 36.7 4.3E+02 0.0094 27.0 11.2 30 171-200 526-555 (637)
24 PF03349 Toluene_X: Outer memb 35.9 3.6E+02 0.0078 25.0 15.4 71 118-193 210-294 (427)
25 PLN00196 alpha-amylase; Provis 34.6 20 0.00042 34.7 1.2 40 29-68 173-212 (428)
26 TIGR00989 3a0801s07tom40 mitoc 33.7 3E+02 0.0064 23.4 15.2 82 146-228 56-146 (161)
27 PF13557 Phenol_MetA_deg: Puta 29.8 3.4E+02 0.0074 22.9 9.9 49 171-219 167-231 (248)
28 PF03573 OprD: outer membrane 29.1 4.8E+02 0.01 24.4 11.7 73 147-219 177-266 (391)
29 PRK14574 hmsH outer membrane p 28.9 4.1E+02 0.0089 28.1 9.8 151 51-207 618-786 (822)
30 PF05420 BCSC_C: Cellulose syn 27.2 1.3E+02 0.0028 28.4 5.3 40 172-211 301-342 (342)
31 COG2067 FadL Long-chain fatty 25.8 4.5E+02 0.0097 25.7 8.8 33 161-193 278-310 (440)
32 PF01835 A2M_N: MG2 domain; I 23.4 3E+02 0.0065 20.1 7.0 42 113-154 43-85 (99)
33 PRK12395 maltoporin; Provision 23.2 7E+02 0.015 24.3 9.7 38 174-211 291-337 (419)
34 PF04357 DUF490: Family of unk 22.8 5.7E+02 0.012 23.2 8.7 45 95-140 317-365 (379)
35 KOG3358 Uncharacterized secret 22.4 43 0.00092 29.1 1.0 16 224-239 69-84 (211)
No 1
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=100.00 E-value=4.9e-55 Score=363.56 Aligned_cols=149 Identities=30% Similarity=0.495 Sum_probs=139.3
Q ss_pred CCCCCCHHHHHHHH-hhc-cCccccceEEEEeccc--CCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCc
Q 026413 31 LPCPIPYEEIHREA-LMS-LKPELFEGLRFDFTKG--LNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK 106 (239)
Q Consensus 31 L~nPG~~E~l~re~-k~~-l~~~~FeG~R~dv~K~--ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k 106 (239)
|+|||+|||||||| |++ +.|+.|||+|+|++|+ |||+|||||+|+||+...| .|+|||+|++++
T Consensus 1 l~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~~p------------~Y~FgA~y~~~~ 68 (161)
T TIGR00989 1 LSNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLP------------PYAFSALFGTNQ 68 (161)
T ss_pred CcCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCCCC------------CceeeeEecCCc
Confidence 78999999999999 553 6788999999999999 5999999999999986533 799999999999
Q ss_pred eEEEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeCCC--------eeEEeEEEe
Q 026413 107 LMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGA--------LFGASYIQN 178 (239)
Q Consensus 107 ~~l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n~~--------~~~~syLQS 178 (239)
++|+|+||+||+|+||++|+|++++++|+++|++++ +..++|+|+||+|+||+++||++||+ ++++|||||
T Consensus 69 ~~l~G~id~dG~l~ar~~~~~~~~~~~K~~~Q~~~~-~~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~~~sGi~v~sylQs 147 (161)
T TIGR00989 69 LFAQGNLDNDGAVSTRLNYRWGDRTISKVQFQISGG-QPDMCQFEHDHLGDDFSASLKAINPSFLEKGLTGIFVGSYLQS 147 (161)
T ss_pred EEEEEEeCCCCCEEEEEEEeeCcceeEEEEEEecCC-CCceEEEEEEecCCeEEEEEEEcCcccccccceEEEEEeeeeh
Confidence 999999999999999999999999999999999875 46899999999999999999999987 689999999
Q ss_pred eCCceeeeeeEEEe
Q 026413 179 VSPHLSLGGEVFWA 192 (239)
Q Consensus 179 VTprLsLG~E~~y~ 192 (239)
||||||||+|++||
T Consensus 148 VTp~LaLG~E~~yq 161 (161)
T TIGR00989 148 VTPRLGLGLEALWQ 161 (161)
T ss_pred hCcceeeeeeeEeC
Confidence 99999999999996
No 2
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=100.00 E-value=4.2e-50 Score=361.09 Aligned_cols=190 Identities=34% Similarity=0.609 Sum_probs=177.2
Q ss_pred CCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCc--eE
Q 026413 31 LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK--LM 108 (239)
Q Consensus 31 L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k--~~ 108 (239)
|||||+|||||||||+++.++.|||+|+|++|.|||+||++|+|+||+..+ ++.|+|+++|++++ .+
T Consensus 1 ~~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~ls~~f~~shs~~lg~~~~-----------~~~y~f~a~y~~~~~~~~ 69 (279)
T cd07305 1 LPNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSL-----------TSSYQFGATYVGDKQYPF 69 (279)
T ss_pred CcCCccHHHHHHHHHHhcCccccccEEEEEccccCcCeeEEEEEEECCCCC-----------CCCcEeeeEEecCCCcEE
Confidence 699999999999999987778888999999999999999999999998642 24899999999999 99
Q ss_pred EEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeCC------CeeEEeEEEeeCCc
Q 026413 109 LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNG------ALFGASYIQNVSPH 182 (239)
Q Consensus 109 l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n~------~~~~~syLQSVTpr 182 (239)
++|+||++|+|++|++++|++++++|+++|+.++ +.+.+|+++||+|+||++++|+.|+ ++++++|||+|||+
T Consensus 70 ~~~~id~~g~l~~~~~~~~~~~~~~k~~~~~~~~-~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~ 148 (279)
T cd07305 70 LQGDIDNDGNLNARIIHQLGDRLRSKLQAQLQDS-KFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPK 148 (279)
T ss_pred EEEEeCCCCceeEEEEeccCcceEEEEEEEecCC-CceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCc
Confidence 9999999999999999999999999999999876 6789999999999999999999999 46899999999999
Q ss_pred eeeeeeEEEe--ccCCcceeEEEEEeeCCCeEEEeeeccc-eeeeEEEEEcCc
Q 026413 183 LSLGGEVFWA--GQHRKSGIGYAARYENDKMVMYFICVLH-MMFAVIWSITPA 232 (239)
Q Consensus 183 LsLG~E~~y~--~~~~~s~~s~aaRY~~~~~iasa~l~~~-~~~~sy~~~~~~ 232 (239)
|+||+|++|+ ...+.+.+++++||++++|+++++++.. .+.+||||.-.-
T Consensus 149 l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~~~l~asY~~kvs~ 201 (279)
T cd07305 149 LALGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQGGLHLSYYRKLSD 201 (279)
T ss_pred EEEEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCCCeEEEEEEEEccc
Confidence 9999999999 4677899999999999999999999995 999999997543
No 3
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-44 Score=325.53 Aligned_cols=203 Identities=31% Similarity=0.482 Sum_probs=175.8
Q ss_pred CchhhhccCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeE
Q 026413 21 KEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGA 100 (239)
Q Consensus 21 ~~~~~~~~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga 100 (239)
...+.+...+++|||++|+||+||+ ++|..+||++++++|.||++|||+|++.|++.... ...+-|++.|.|++
T Consensus 17 ~~~~~~~~~~~~Npgt~e~L~~~~~--~~p~~~~g~kl~v~k~Ls~~fqvs~t~~ls~~~~s----g~~fg~ty~~~~q~ 90 (308)
T KOG3296|consen 17 SNLSRRACYNLLNPGTVEELHSEAS--VDPTLSEGVKLGVNKGLSNHFQVSPTFVLSHIAAS----GYRFGPTYVYTFQA 90 (308)
T ss_pred cccccccccccCCcHHHHHhhhhhc--cCceeecceEeeecccccCceEeccceecccCccc----cceeccceeeeecc
Confidence 3446677789999999999999998 79999999999999999999999999999976411 01112233344444
Q ss_pred EEeCCceEEEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeCCC-----eeEEeE
Q 026413 101 NYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGA-----LFGASY 175 (239)
Q Consensus 101 ~y~~~k~~l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n~~-----~~~~sy 175 (239)
.|...+.+++|+||+||+|+++++|+|++++++|+++|++++ +....|++.||+|.||++.++.+|+. +++++|
T Consensus 91 ~~~~~~~il~G~vD~~Gslna~l~~~l~~~Lr~K~~~q~~~~-k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~ 169 (308)
T KOG3296|consen 91 SPTEAFLILRGDVDNDGSLNARLIHQLTDNLRSKVALQIQQS-KEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASY 169 (308)
T ss_pred ccCCCcceEEEecCCCCchhheeecccchhhHHHHHHHhcch-hhhccccccceecccccccccccCcccccchHHHHHH
Confidence 444455799999999999999999999999999999999975 68889999999999999999999986 378899
Q ss_pred EEeeCCceeeeeeEEEec--cCCcceeEEEEEeeCCCeEEEeeeccceeeeEEEEEc
Q 026413 176 IQNVSPHLSLGGEVFWAG--QHRKSGIGYAARYENDKMVMYFICVLHMMFAVIWSIT 230 (239)
Q Consensus 176 LQSVTprLsLG~E~~y~~--~~~~s~~s~aaRY~~~~~iasa~l~~~~~~~sy~~~~ 230 (239)
||||||+||||+|++|++ +..++++||++||.+.+|++++++++.+++++||+..
T Consensus 170 lqsvT~~LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~~g~~~~y~~r~ 226 (308)
T KOG3296|consen 170 LQSVTPRLSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQQGLTGTYYQRA 226 (308)
T ss_pred HhhhcccccccceeEeccCCCccccceeeeeeeeecceeeEEecccccceehhhhhh
Confidence 999999999999999999 4578999999999999999999999999999999853
No 4
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=100.00 E-value=1.2e-34 Score=255.81 Aligned_cols=188 Identities=33% Similarity=0.541 Sum_probs=161.8
Q ss_pred CCCCHHHHHHHHhhccCcc-ccceEEEEecc--cCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCceEE
Q 026413 33 CPIPYEEIHREALMSLKPE-LFEGLRFDFTK--GLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLML 109 (239)
Q Consensus 33 nPG~~E~l~re~k~~l~~~-~FeG~R~dv~K--~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k~~l 109 (239)
|||+||||+||+|+++..+ +|||+|+|++| .++++|+++|+++++... +..|+|++.|.+.+..+
T Consensus 1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 68 (273)
T PF01459_consen 1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSV------------PSSYSFGAKYKGPKLTV 68 (273)
T ss_dssp -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--------------EEEEEEEEEECEEEEE
T ss_pred CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCC------------ccceEEEEEEeCceeeE
Confidence 7999999999999877766 79999999999 899999999999999852 35899999999988999
Q ss_pred EEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeC--CCeeEEeEEEeeCCceeeee
Q 026413 110 IGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN--GALFGASYIQNVSPHLSLGG 187 (239)
Q Consensus 110 ~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n--~~~~~~syLQSVTprLsLG~ 187 (239)
++++|++|++++++.+.+.+++++|+.+++.++......++++||++++|++++++.+ ..++.++|+|+|+|+|+||+
T Consensus 69 ~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~ 148 (273)
T PF01459_consen 69 KGDTDNDGNLEASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGA 148 (273)
T ss_dssp EEETTTEEEEEEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEE
T ss_pred EEEeCCcccEEEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEE
Confidence 9999999999999999999999999999998765457899999999999999999998 66799999999999999999
Q ss_pred eEEEeccCCcce-----eEEEEEeeCCCeEEEeeec--cceeeeEEEEEcCc
Q 026413 188 EVFWAGQHRKSG-----IGYAARYENDKMVMYFICV--LHMMFAVIWSITPA 232 (239)
Q Consensus 188 E~~y~~~~~~s~-----~s~aaRY~~~~~iasa~l~--~~~~~~sy~~~~~~ 232 (239)
|++|........ ++|++||.+++|++++++. ...+.+||||....
T Consensus 149 e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~ 200 (273)
T PF01459_consen 149 EATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVND 200 (273)
T ss_dssp EEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESST
T ss_pred EEEEecccCCcCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEecc
Confidence 999998876554 9999999999999999996 45999999998643
No 5
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=100.00 E-value=2.8e-32 Score=245.29 Aligned_cols=183 Identities=13% Similarity=0.082 Sum_probs=165.1
Q ss_pred CHHHHHHHHhhccCccccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCc--------e
Q 026413 36 PYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK--------L 107 (239)
Q Consensus 36 ~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k--------~ 107 (239)
+|+||+|+||+++.++.|+|+|+|++|.++++|+++|++.+++. ++.|.|+++|...+ .
T Consensus 1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~~f~~s~~~~~~~~-------------~~~~~~~~~~~~k~~~~~~~~t~ 67 (274)
T cd07303 1 TYAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETI-------------ESTTKVGGSLETKYRWSPYGLTF 67 (274)
T ss_pred ChhHhhhhhHHhcccCCCCCEEEEEEecCCCccEEccccccccc-------------CCCceEEEEEEEeeeecCCCeEE
Confidence 59999999999888898889999999999999999999999974 24899999999754 3
Q ss_pred EEEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeCCCeeEEeEEEeeCCceeeee
Q 026413 108 MLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGG 187 (239)
Q Consensus 108 ~l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n~~~~~~syLQSVTprLsLG~ 187 (239)
++++++|++|+++++++++|.+++++|+++|+.++......|+++||+++|+++++++.+.++++.+|+|++||+|+||+
T Consensus 68 ~~~~~~dn~~~~~~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~~~gp~v~~~~~~g~~~~~~G~ 147 (274)
T cd07303 68 TEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGY 147 (274)
T ss_pred EEEEEcCCcceEEEEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEeecCCCEEEEEEEEeecceEEEE
Confidence 89999999999999999999999999999999875567789999999999999999998888888899999999999999
Q ss_pred eEEEeccC----CcceeEEEEEeeCCCeEEEeeecc-ceeeeEEEEEcCce
Q 026413 188 EVFWAGQH----RKSGIGYAARYENDKMVMYFICVL-HMMFAVIWSITPAC 233 (239)
Q Consensus 188 E~~y~~~~----~~s~~s~aaRY~~~~~iasa~l~~-~~~~~sy~~~~~~~ 233 (239)
|++|.... ...+++|++|| ++|++++++.. ..+.+||||.-.-.
T Consensus 148 e~~yd~~~~~~~~~~~~~y~~~y--~d~~~s~~l~~~~~l~~Sy~hkvs~~ 196 (274)
T cd07303 148 QMVFETVSRVTQSNFAVGYKTDY--NEFQAHTNVNDGTEFGGSIYHKVNDK 196 (274)
T ss_pred EEEEeccccccccceEEEEEccC--CCeEEEEEEcCCCeEEEEEEEEcCCc
Confidence 99999743 35579999999 89999999988 59999999876543
No 6
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=99.72 E-value=2.3e-15 Score=135.69 Aligned_cols=166 Identities=13% Similarity=0.071 Sum_probs=141.1
Q ss_pred cccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCceEEEEE-ecC-----CCceeEEEE
Q 026413 51 ELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGR-VLT-----DGRLNARVK 124 (239)
Q Consensus 51 ~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k~~l~g~-vD~-----~G~L~ar~~ 124 (239)
|.---+...+++.++++|.+.|++.+.... ...|+|...|.+++..+--. .++ .|.+.++++
T Consensus 75 d~~g~l~~~~~~~~~~~~~~k~~~~~~~~~------------~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~yl 142 (279)
T cd07305 75 DNDGNLNARIIHQLGDRLRSKLQAQLQDSK------------FNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYL 142 (279)
T ss_pred CCCCceeEEEEeccCcceEEEEEEEecCCC------------ceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEE
Confidence 333446788888999999999999997542 35899999999988533333 333 599999999
Q ss_pred eecCCCceEEEEEEEc--CCCCcceeEEEEEEecCceEEEEEEeCCCeeEEeEEEeeCCceeeeeeEEEeccCCcceeEE
Q 026413 125 CDLSDNLSLKANAQLT--NEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGY 202 (239)
Q Consensus 125 ~~l~~~l~~K~~~ql~--~~~~~~~~q~e~Dy~G~d~taslK~~n~~~~~~syLQSVTprLsLG~E~~y~~~~~~s~~s~ 202 (239)
+.++++|.++..++.. .+.......+.++|+++||++++++.+.+.+.++|.|.|+++|++|+|+.|....+++.+++
T Consensus 143 q~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tv 222 (279)
T cd07305 143 QSVTPKLALGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATL 222 (279)
T ss_pred EEccCcEEEEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCCCeEEEEEEEEcccceEeeeeeeecccCCceeEEE
Confidence 9999999999999877 55667788899999999999999999988899999999999999999999999889999999
Q ss_pred EEEeeCCCeEEEeeeccceeeeEEEE
Q 026413 203 AARYENDKMVMYFICVLHMMFAVIWS 228 (239)
Q Consensus 203 aaRY~~~~~iasa~l~~~~~~~sy~~ 228 (239)
++||.-+++++.+++.....-...|+
T Consensus 223 g~~y~~~~~~~k~~ids~g~v~~~~e 248 (279)
T cd07305 223 GYQYDFRQSRFRGSIDSNGKVSAVLE 248 (279)
T ss_pred EEEEEcCCCEEEEEEcCCCEEEEEEE
Confidence 99999999999999988855555553
No 7
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=99.15 E-value=2.9e-08 Score=89.43 Aligned_cols=134 Identities=16% Similarity=0.231 Sum_probs=102.1
Q ss_pred ceEEeEEEeCCceEEEEEecCC--CceeEEEEeecCCCceEEEEEEEcCC-CCcceeEEEEEEecCceEEEEEEeCCCee
Q 026413 95 HYEFGANYIDPKLMLIGRVLTD--GRLNARVKCDLSDNLSLKANAQLTNE-PHMSHGMINFDYKGKDYRTQFQFGNGALF 171 (239)
Q Consensus 95 ~Y~fga~y~~~k~~l~g~vD~~--G~L~ar~~~~l~~~l~~K~~~ql~~~-~~~~~~q~e~Dy~G~d~taslK~~n~~~~ 171 (239)
+..+.+.|..+..-+-++||.. =.+++.+.... ++|.+=..+...-. .+.....+-+-|+++||++++++.|...+
T Consensus 106 s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~-~~~~~G~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~~~~l 184 (276)
T cd07306 106 SGKLKAGYKHDPININADVDLNKGPLVGASAVLGY-KGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTL 184 (276)
T ss_pred eEEEEEEEecCCeeEEEEecccCCCeeEEEEEecc-cceEEEEEEEEeccCCcEeeEEEEEEEecCCeEEEEEECCCCEE
Confidence 4566777777766666666543 23444444332 55554444433211 24566778889999999999999998889
Q ss_pred EEeEEEeeCCceeeeeeEEEeccCCcceeEEEEEeeCCC-eEEEeeeccc-eeeeEEEEE
Q 026413 172 GASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVMYFICVLH-MMFAVIWSI 229 (239)
Q Consensus 172 ~~syLQSVTprLsLG~E~~y~~~~~~s~~s~aaRY~~~~-~iasa~l~~~-~~~~sy~~~ 229 (239)
.+||+|.|+++|++|+|+.|.....++.+++++||.-++ +++-|++... .+.++|++.
T Consensus 185 ~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v~~~y~~k 244 (276)
T cd07306 185 RGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGLSYQHK 244 (276)
T ss_pred EEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceEEEEEEEE
Confidence 999999999999999999999887889999999998775 9999999887 899999884
No 8
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=99.05 E-value=1.2e-07 Score=85.29 Aligned_cols=188 Identities=18% Similarity=0.204 Sum_probs=133.8
Q ss_pred CCCHHHHHHHHhhccCc-cccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCceEEEEE
Q 026413 34 PIPYEEIHREALMSLKP-ELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGR 112 (239)
Q Consensus 34 PG~~E~l~re~k~~l~~-~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k~~l~g~ 112 (239)
|+.|-||.|.||++|.. ..|...++|++-.-.+.+.++-.-...... ....=.+.+.|....+.+-=.
T Consensus 1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~-----------~~~~g~~e~k~~~~~~t~~~k 69 (276)
T cd07306 1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDT-----------GKVSGSLEAKYKIKGLTLTQK 69 (276)
T ss_pred CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCC-----------ceEEEEEEEEEEeCCEEEEEE
Confidence 78999999999987654 555788999887655444333222222110 011234555555556677778
Q ss_pred ecCCCceeEEEEee--cCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeC--CCeeEEeEEEeeCCceeeeee
Q 026413 113 VLTDGRLNARVKCD--LSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN--GALFGASYIQNVSPHLSLGGE 188 (239)
Q Consensus 113 vD~~G~L~ar~~~~--l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n--~~~~~~syLQSVTprLsLG~E 188 (239)
++.++.|.+.+-.. +.+.+.+-+...+.+........++++|..+...+...+.- +..+.++-.... ++|++|+|
T Consensus 70 ~~t~n~l~t~v~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~-~~~~~G~e 148 (276)
T cd07306 70 WNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLGY-KGFLLGAE 148 (276)
T ss_pred EeCCCceeEEEEECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecc-cceEEEEE
Confidence 89899988887654 33666666655555422334567899999998888776554 445666777765 89999999
Q ss_pred EEEeccC-CcceeEEEEEeeCCCeEEEeeeccc-eeeeEEEEEcCce
Q 026413 189 VFWAGQH-RKSGIGYAARYENDKMVMYFICVLH-MMFAVIWSITPAC 233 (239)
Q Consensus 189 ~~y~~~~-~~s~~s~aaRY~~~~~iasa~l~~~-~~~~sy~~~~~~~ 233 (239)
+.|.... ..+..++++||++++|++++++... .+.+||||-..-+
T Consensus 149 ~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~~~~l~~S~~~kv~~~ 195 (276)
T cd07306 149 VVYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTLRGSYFHKVSPR 195 (276)
T ss_pred EEEeccCCcEeeEEEEEEEecCCeEEEEEECCCCEEEEEEEEEcCCC
Confidence 9998775 4678999999999999999999874 9999999976544
No 9
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=98.91 E-value=6e-07 Score=79.21 Aligned_cols=160 Identities=21% Similarity=0.226 Sum_probs=116.8
Q ss_pred EEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCceEEEEEecC--CCceeEEEEeecCCCceE
Q 026413 56 LRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLT--DGRLNARVKCDLSDNLSL 133 (239)
Q Consensus 56 ~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k~~l~g~vD~--~G~L~ar~~~~l~~~l~~ 133 (239)
+.+++...+.+.+.+.-...+.... -...+++.+.|.++...+..+++. .+.+.+.+.+.++++|.+
T Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~l 146 (273)
T PF01459_consen 78 LEASVRNKLSPGLKLKLSAQLSPGS-----------GKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLAL 146 (273)
T ss_dssp EEEEEESSTTTTEEEEEEEEE-TTT-----------S-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEE
T ss_pred EEEEEecccCcceEEEEEEEEeecC-----------CceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEE
Confidence 3444444455555555444443321 014899999999999877777776 899999999999999998
Q ss_pred EEEEEEcCCC-CcceeEEEEEEecC----ceEEEEEEe-CCCeeEEeEEEeeCCceeeeeeEEEeccCCcceeEEEEEee
Q 026413 134 KANAQLTNEP-HMSHGMINFDYKGK----DYRTQFQFG-NGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYE 207 (239)
Q Consensus 134 K~~~ql~~~~-~~~~~q~e~Dy~G~----d~taslK~~-n~~~~~~syLQSVTprLsLG~E~~y~~~~~~s~~s~aaRY~ 207 (239)
=..+...... ......+.+-|.++ ||++++++. +...+.++|.|.|+++|++|.|+.|.....++.+++++||.
T Consensus 147 G~e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ 226 (273)
T PF01459_consen 147 GAEATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYK 226 (273)
T ss_dssp EEEEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEE
T ss_pred EEEEEEecccCCcCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEE
Confidence 8777654332 22223345666666 999999996 56778999999999999999999999888899999999999
Q ss_pred CCCe-EEEeeeccc-eeeeEE
Q 026413 208 NDKM-VMYFICVLH-MMFAVI 226 (239)
Q Consensus 208 ~~~~-iasa~l~~~-~~~~sy 226 (239)
-+++ .+-+.+... -+.++|
T Consensus 227 l~~~~~vk~kvds~g~v~~~~ 247 (273)
T PF01459_consen 227 LDDSSTVKAKVDSNGRVSASY 247 (273)
T ss_dssp ECTTEEEEEEEETTSEEEEEE
T ss_pred cCcccEEEEEEcCCCEEEEEE
Confidence 8888 777888887 444444
No 10
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=98.62 E-value=2.2e-05 Score=70.98 Aligned_cols=131 Identities=14% Similarity=0.126 Sum_probs=94.0
Q ss_pred eEEeEEEeCCceEEEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEec--CceEEEEEEeCCCeeEE
Q 026413 96 YEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKG--KDYRTQFQFGNGALFGA 173 (239)
Q Consensus 96 Y~fga~y~~~k~~l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G--~d~taslK~~n~~~~~~ 173 (239)
-++..-|.++...+-..+|..|-+-.......+++|.+=..+-..-........+.+-|.+ +||++++++.|.+.+.+
T Consensus 108 ~q~~~~y~~~~~~~~l~~~~~gp~v~~~~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~y~~~y~d~~~s~~l~~~~~l~~ 187 (274)
T cd07303 108 AKIKTGYKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVGYKTDYNEFQAHTNVNDGTEFGG 187 (274)
T ss_pred EEEeccEEcCCeeEEEEeecCCCEEEEEEEEeecceEEEEEEEEeccccccccceEEEEEccCCCeEEEEEEcCCCeEEE
Confidence 3555556666555555566666655555555567776655443321112234456677888 89999999988777899
Q ss_pred eEEEeeCCceeeeeeEEEeccCCcceeEEEEEeeCCC-eEEEeeeccc-eeeeEE
Q 026413 174 SYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVMYFICVLH-MMFAVI 226 (239)
Q Consensus 174 syLQSVTprLsLG~E~~y~~~~~~s~~s~aaRY~~~~-~iasa~l~~~-~~~~sy 226 (239)
||.|.|+++|++|+|+.|....+++.+++++||.-++ .++-|++... -+-+.|
T Consensus 188 Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakids~g~v~~~~ 242 (274)
T cd07303 188 SIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNSSLVGLGY 242 (274)
T ss_pred EEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEECCCceEEEEE
Confidence 9999999999999999999777889999999999876 7777888877 344444
No 11
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=97.93 E-value=0.0015 Score=59.71 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=67.0
Q ss_pred cceeEEEEEEecCceEEEEEEeCCCeeEEeEEEeeCCceeeeeeEEEeccCCcceeEEEEEeeCCC-eEEEeeeccc-ee
Q 026413 145 MSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVMYFICVLH-MM 222 (239)
Q Consensus 145 ~~~~q~e~Dy~G~d~taslK~~n~~~~~~syLQSVTprLsLG~E~~y~~~~~~s~~s~aaRY~~~~-~iasa~l~~~-~~ 222 (239)
....-+.+-|..+|+++.+++.|...+.+++-|.|..++..|.++.|.+......+++++||.-+. ..+-|.+..- -+
T Consensus 163 ~t~~n~~lgy~~~d~~l~~~~nn~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVnn~g~~ 242 (281)
T KOG3126|consen 163 LTKYNAALGYTTEDFTLHLNLNNGTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVNNAGLA 242 (281)
T ss_pred EeeEEEEEEeecCCcEEEEEecccchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccCCCceeeeeecCCcee
Confidence 344556788999999999999888778889999999999999999999887788999999998553 5555666644 44
Q ss_pred eeEEEEE
Q 026413 223 FAVIWSI 229 (239)
Q Consensus 223 ~~sy~~~ 229 (239)
-+.|-|.
T Consensus 243 gl~yq~~ 249 (281)
T KOG3126|consen 243 GLGYQQT 249 (281)
T ss_pred eEEEEEe
Confidence 4455443
No 12
>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes. Proteins in this family are typically between 415 and 473 amino acids in length.
Probab=97.14 E-value=0.0069 Score=54.75 Aligned_cols=123 Identities=17% Similarity=0.232 Sum_probs=90.7
Q ss_pred ceEEEEEec-CCCceeEEEEeecCCCceEEEEEEEcCC---CCcceeEEEEEEecCceEEEEEEeCC-CeeEEeEEEee-
Q 026413 106 KLMLIGRVL-TDGRLNARVKCDLSDNLSLKANAQLTNE---PHMSHGMINFDYKGKDYRTQFQFGNG-ALFGASYIQNV- 179 (239)
Q Consensus 106 k~~l~g~vD-~~G~L~ar~~~~l~~~l~~K~~~ql~~~---~~~~~~q~e~Dy~G~d~taslK~~n~-~~~~~syLQSV- 179 (239)
+.++-|+|- +...|+|=+++++++.+.+.+.+--... +......+-+.+....|...+-.... +++|+-.|...
T Consensus 84 ~sLlYGRmylP~s~LeAl~ikRlsp~~Ql~~~~vS~~~~~~~~~~~ll~~lQ~dtgk~~~E~lyStd~~L~G~R~L~NFg 163 (260)
T PF12519_consen 84 PSLLYGRMYLPSSRLEALYIKRLSPTTQLLLKAVSSPHSGLPNGGTLLGYLQHDTGKYSQEYLYSTDDALLGFRGLYNFG 163 (260)
T ss_pred ceEEEEEEecChhhhhhhhhhcCCHhHheeeeeeecccccCCCCCeEEEEEEecCCCCceEEEEEcCCceEEEEEEEecC
Confidence 379999998 5789999999999998766554432211 23445556777777888888766654 46665555521
Q ss_pred -------------------------CCceeeeeeEEEeccCCcceeEEEEEee------CCCeEEEeeeccc--eeeeEE
Q 026413 180 -------------------------SPHLSLGGEVFWAGQHRKSGIGYAARYE------NDKMVMYFICVLH--MMFAVI 226 (239)
Q Consensus 180 -------------------------TprLsLG~E~~y~~~~~~s~~s~aaRY~------~~~~iasa~l~~~--~~~~sy 226 (239)
-.+|++|+|+.|.......++|.+.||. +...++|+++.+- -+.++|
T Consensus 164 ~~~~~~~~~~~~~~~~~s~~~~~~~~~r~S~GaE~yys~~~ks~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstY 243 (260)
T PF12519_consen 164 PDPSKSNNSPNNSLYNNSRVDEERIYGRFSAGAELYYSALNKSPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTY 243 (260)
T ss_pred CCccccccccccccccccccccccccceEeeccEEEEEeeccCCcccceeEEEecCCCCCCCeEEEEEeccccccchhee
Confidence 1199999999999888889999999994 4569999999988 666777
Q ss_pred EE
Q 026413 227 WS 228 (239)
Q Consensus 227 ~~ 228 (239)
=-
T Consensus 244 s~ 245 (260)
T PF12519_consen 244 SV 245 (260)
T ss_pred ee
Confidence 43
No 13
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.051 Score=50.31 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=58.6
Q ss_pred CCceeEEEEeecCCCceEEEEEEEcC--CCCcceeEEEEEEecCceEEEEEEeCCCeeEEeEEEeeCCceeeeeeEEEec
Q 026413 116 DGRLNARVKCDLSDNLSLKANAQLTN--EPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAG 193 (239)
Q Consensus 116 ~G~L~ar~~~~l~~~l~~K~~~ql~~--~~~~~~~q~e~Dy~G~d~taslK~~n~~~~~~syLQSVTprLsLG~E~~y~~ 193 (239)
.|.+-+.++..++++|.+-..+-... ++.....-+-.-|.-.+|.+.+.++-.+ ..+.|-|.+.++++.|.|+-+-+
T Consensus 162 sgi~v~~~lqsvT~~LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~~g-~~~~y~~r~~~~~~~~ve~~~~~ 240 (308)
T KOG3296|consen 162 SGIYVASYLQSVTPRLSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQQG-LTGTYYQRAVEKLQMGVEFETNT 240 (308)
T ss_pred chHHHHHHHhhhcccccccceeEeccCCCccccceeeeeeeeecceeeEEeccccc-ceehhhhhhhhhhccceeEeeec
Confidence 34444445555555555433332222 1122222234466666777777776666 44599999999999999999987
Q ss_pred cCC--cceeEEEEEeeCCCeEEE
Q 026413 194 QHR--KSGIGYAARYENDKMVMY 214 (239)
Q Consensus 194 ~~~--~s~~s~aaRY~~~~~ias 214 (239)
.-+ +..++|..+|...+.++=
T Consensus 241 ~~~~~~~t~a~~~~l~~~~s~~r 263 (308)
T KOG3296|consen 241 RLQSTDVTAAYGYDLPTAQSVFR 263 (308)
T ss_pred ccCCcceEEEEEeeccCccceEE
Confidence 644 456777777755443333
No 14
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=70.35 E-value=73 Score=29.34 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=66.8
Q ss_pred ceEEeEEEeCCceEEEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEe-cCceEEEEEEeCCCeeEE
Q 026413 95 HYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYK-GKDYRTQFQFGNGALFGA 173 (239)
Q Consensus 95 ~Y~fga~y~~~k~~l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~-G~d~taslK~~n~~~~~~ 173 (239)
.|.++..|..+...+-..+.+.+.+.+.+-++..+.+.+-.++............+-.-|. ..+-+..-|+-|.+.+++
T Consensus 165 ~~n~~lgy~~~d~~l~~~~nn~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVnn~g~~gl 244 (281)
T KOG3126|consen 165 KYNAALGYTTEDFTLHLNLNNGTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVNNAGLAGL 244 (281)
T ss_pred eEEEEEEeecCCcEEEEEecccchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccCCCceeeeeecCCceeeE
Confidence 4555666666665666666555666666667777776655555544332233334444555 356667788888899999
Q ss_pred eEEEeeCCceeeeeeEEEecc
Q 026413 174 SYIQNVSPHLSLGGEVFWAGQ 194 (239)
Q Consensus 174 syLQSVTprLsLG~E~~y~~~ 194 (239)
.|=|.+.|+..|+.-+.+-..
T Consensus 245 ~yq~~lrp~i~~t~s~~~d~~ 265 (281)
T KOG3126|consen 245 GYQQTLRPGIKVTLSAEFDGK 265 (281)
T ss_pred EEEEecCCCcEEEEEEEEecc
Confidence 999999999988887777653
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=46.21 E-value=1.2e+02 Score=31.26 Aligned_cols=149 Identities=15% Similarity=0.150 Sum_probs=78.9
Q ss_pred cceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccc--cCCcceEEeEEEeCCce----EEEEEec-CCCce----eE
Q 026413 53 FEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK--IPTAHYEFGANYIDPKL----MLIGRVL-TDGRL----NA 121 (239)
Q Consensus 53 FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k--~p~~~Y~fga~y~~~k~----~l~g~vD-~~G~L----~a 121 (239)
=-|.|+++...+|.|++++-+...-+...| ...++ +-.-++.++++|--+.. +-.+-.| +|||. .+
T Consensus 563 ~~g~~~~~~~~~nd~w~~~~~~~~~~~~~p---lra~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~fsD~N~r~~~~~ 639 (765)
T PRK10049 563 KPGARLSGWYDFNDNWRIGGSLERLSHRTP---LRALKNGVTANGGQGYVRWYQNERREYGVSWAFSDFSDGNRRQEYSL 639 (765)
T ss_pred CcccEEEeeeccCCCeeeeceeecCCCCCC---HHHHHcCCccccceEEEEEeEcceEEEEeeeeeecccCCchhhheec
Confidence 347899999999999999987777544433 11122 12456778888875541 3333333 46765 33
Q ss_pred EEEeecC--CCceEEEEEEEcCCCCcceeEEEEEEecC--ceEEEEEEeCCC-eeEEeEEEeeCCceeeeeeEEEeccC-
Q 026413 122 RVKCDLS--DNLSLKANAQLTNEPHMSHGMINFDYKGK--DYRTQFQFGNGA-LFGASYIQNVSPHLSLGGEVFWAGQH- 195 (239)
Q Consensus 122 r~~~~l~--~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~--d~taslK~~n~~-~~~~syLQSVTprLsLG~E~~y~~~~- 195 (239)
....++. +++.+-+...+..+ .++ ..+.+|-.+ |+++.+.+.-.- ++- .|=.+.+.+|.+|+=..||..-
T Consensus 640 ~~~~~~~~~p~~~~~~~~~~~~~-~n~--~~~~~YfnP~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~g~y~q~~~~ 715 (765)
T PRK10049 640 SGQERLWSSPYLIVDFLPSLYYS-QNS--EHDTPYYNPIKDFDVLPALEADHLLYR-RYETSWSQQFSAGVGAYWQKHYG 715 (765)
T ss_pred eeeEEeecCCeEEEeeceEEeec-cCC--CCCCCccCcchhhhhhhhhhhhhheee-ecccceEEEEEecccchhhcccC
Confidence 4444544 33333333222221 122 235566553 333333333322 233 5555667777777777777542
Q ss_pred --CcceeEEEEEeeC
Q 026413 196 --RKSGIGYAARYEN 208 (239)
Q Consensus 196 --~~s~~s~aaRY~~ 208 (239)
....++|.=||.-
T Consensus 716 ~~~~~~~~y~~~~~~ 730 (765)
T PRK10049 716 TGAITQLGYGQRISW 730 (765)
T ss_pred CCcceeeeeeeEEEE
Confidence 2345666556543
No 16
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=45.77 E-value=2.2e+02 Score=27.40 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=27.6
Q ss_pred EEEEEeCCCeeEEeEEEeeCCceeeeeeEEEec
Q 026413 161 TQFQFGNGALFGASYIQNVSPHLSLGGEVFWAG 193 (239)
Q Consensus 161 aslK~~n~~~~~~syLQSVTprLsLG~E~~y~~ 193 (239)
.+.++.-|..+.++..+.++|+|.|.+.+.|..
T Consensus 279 ~~~~~~~P~~~~lg~~~~~~~~~~l~~d~~wt~ 311 (435)
T PRK10716 279 GSLTLNLPEMWEVSGYNRVAPQWAIHYSLAYTS 311 (435)
T ss_pred cEEeecCCcEEEEEeEEecCCcEEEEEEEEEee
Confidence 455666688888899999999999999999963
No 17
>TIGR01782 TonB-Xanth-Caul TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear.
Probab=45.50 E-value=3.6e+02 Score=27.79 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=47.7
Q ss_pred ccceEEEEecccCC------CCeeeEEEEEe--CCCCCCCC-----CccccccCCcceEEeEEEeCCce-----------
Q 026413 52 LFEGLRFDFTKGLN------QKFSLSHSVIM--GPTEIPSQ-----STETIKIPTAHYEFGANYIDPKL----------- 107 (239)
Q Consensus 52 ~FeG~R~dv~K~ls------~~FqvsHs~~l--gs~~~p~~-----~~~~~k~p~~~Y~fga~y~~~k~----------- 107 (239)
...|+.+++.+.+. +.|.++-...+ +....+.. .......|...|.+.+.|-.++.
T Consensus 689 ~~~G~El~~~~~~~~lp~~~~~l~~~~n~T~~~s~~~~~~~~~~~~~~~l~~~p~~~~n~~l~Y~~~~~~~~l~~~y~~~ 768 (845)
T TIGR01782 689 KIRGVELGYQQTFDFLPGPLSGFGVQANYTYVDSEADPSVDGVQRRKLPLPGLSKNTANATLYYEKGGFSARLSYNYRSD 768 (845)
T ss_pred EEEEEEEEEEEEcccCCccccCcEEEEEEEEEccccccccCCCCccccccCCCCcccEEEEEEEECCCEEEEEEEEeech
Confidence 57889999999876 56665544443 22111100 00011234456666666654331
Q ss_pred EE--E---------EEecCCCceeEEEEeecCCCceEEEEEE-EcC
Q 026413 108 ML--I---------GRVLTDGRLNARVKCDLSDNLSLKANAQ-LTN 141 (239)
Q Consensus 108 ~l--~---------g~vD~~G~L~ar~~~~l~~~l~~K~~~q-l~~ 141 (239)
.+ . ..+++-+.|++.+.|++++++.+++.++ |.+
T Consensus 769 ~~~~~~~~~~~~~~~~~~~y~~lDl~~sy~~~~~~~l~l~v~NL~d 814 (845)
T TIGR01782 769 YLLDVGGSNINRLDRYVDPRGQLDLSASYQVSDHLSLGLQASNLTN 814 (845)
T ss_pred hhhhcccccccccccccccceEEEEEEEEecCCCeEEEEEEEECCC
Confidence 00 0 0234456677777777777776666653 444
No 18
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=44.39 E-value=9.3 Score=37.07 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=31.6
Q ss_pred ccCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCC
Q 026413 27 DYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQK 67 (239)
Q Consensus 27 ~~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~ 67 (239)
..++..||-..+.|.+-++-.+...-+||||+|..|.+.+.
T Consensus 201 pDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~ 241 (479)
T PRK09441 201 ADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAW 241 (479)
T ss_pred cccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHH
Confidence 35677889888888776665455589999999999988653
No 19
>PF02530 Porin_2: Porin subfamily; InterPro: IPR003684 This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to Gram-negative porins []. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of Gram-negative bacteria.; GO: 0015288 porin activity, 0006810 transport, 0016020 membrane
Probab=44.17 E-value=2.8e+02 Score=26.15 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=48.3
Q ss_pred eeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeCCC----eeEEeEEEeeCCceeeeeeEEEecc
Q 026413 119 LNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGA----LFGASYIQNVSPHLSLGGEVFWAGQ 194 (239)
Q Consensus 119 L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n~~----~~~~syLQSVTprLsLG~E~~y~~~ 194 (239)
..+.+.|.|++.|+.=...++...++ ........| ++.... ..+.+ -.+++-.=++++.|.+|.|+.|..-
T Consensus 279 ~~~~~~~~w~~~w~~~~~~~~~~t~~-~~~~~~~s~---~~~~~~-~~~~~~~~~~v~anl~w~pv~~l~ig~E~~Y~~~ 353 (379)
T PF02530_consen 279 FDGAYYHNWNPQWRSYGGYQYNFTDK-VTITLGASY---AVGDSA-NGNDDFNIWQVGANLFWSPVKNLDIGAEYQYTDR 353 (379)
T ss_pred ccceeeeccCcceeeeEEEEEcccCc-eeEechhhc---cccccc-cccCCCcEEEEEEEEEEEECCCcEEEEEEEEEec
Confidence 66778899999998844444432221 112222333 222111 11121 2567889999999999999999864
Q ss_pred CCc---ceeEEEEEeeC
Q 026413 195 HRK---SGIGYAARYEN 208 (239)
Q Consensus 195 ~~~---s~~s~aaRY~~ 208 (239)
..+ ....=++.|+-
T Consensus 354 d~~~~~~~~~~~~~~~~ 370 (379)
T PF02530_consen 354 DQKNSDGDAKPGAVYEL 370 (379)
T ss_pred CCccccccCCCcceeec
Confidence 322 22444455543
No 20
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=41.62 E-value=2e+02 Score=26.41 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=31.5
Q ss_pred eEEeEEEeeCCceeeeeeEEEeccC--------CcceeEEEEEeeCCC-eEEEeeec
Q 026413 171 FGASYIQNVSPHLSLGGEVFWAGQH--------RKSGIGYAARYENDK-MVMYFICV 218 (239)
Q Consensus 171 ~~~syLQSVTprLsLG~E~~y~~~~--------~~s~~s~aaRY~~~~-~iasa~l~ 218 (239)
+.++.-+.+++||++.+++-|+... ....+++.++|.-.. |.+.+.++
T Consensus 299 ~~~~~~h~~~~~l~~~~~~~~~~~~y~~~~r~D~~~~~~~~~~y~~~r~~~~~~~y~ 355 (381)
T PF10082_consen 299 VSLGWTHQLTPRLSLSLSAGYENRDYQGSDREDDTYSAGLGLTYRLNRWLSLSAGYR 355 (381)
T ss_pred EEEEEEEEeeeeEEEEEEEEEEEeEcCCCCceeeEEEEEEEEEEEecCCEEEEEEEE
Confidence 4456778888888888888887531 234677888886544 45555443
No 21
>PF07642 DUF1597: Outer membrane protein family (DUF1597); InterPro: IPR011486 This is a family of proteins for which no function is known yet.
Probab=41.32 E-value=2.8e+02 Score=25.24 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=19.0
Q ss_pred eeEEeEEEeeCCceeeeeeEEEecc
Q 026413 170 LFGASYIQNVSPHLSLGGEVFWAGQ 194 (239)
Q Consensus 170 ~~~~syLQSVTprLsLG~E~~y~~~ 194 (239)
++.+-+-..+++||.|++|..|...
T Consensus 209 ~~dl~~~~~~~~~~~l~~~~~y~~~ 233 (344)
T PF07642_consen 209 FYDLVASYKPTDKLTLGLEYDYGWQ 233 (344)
T ss_pred EEEEEEEEEcCCcEEEEEEEEEEEe
Confidence 3555666788999999999888653
No 22
>PLN02361 alpha-amylase
Probab=36.91 E-value=20 Score=34.44 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=28.5
Q ss_pred ccCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 27 DYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 27 ~~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
..++..||-.-++|.+-.+-++...-|||+|+|+.|.+++.|
T Consensus 147 pDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~~~f 188 (401)
T PLN02361 147 PNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYSAKF 188 (401)
T ss_pred CccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCCHHH
Confidence 345567776666665555433345799999999999986533
No 23
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=36.68 E-value=4.3e+02 Score=27.03 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=21.8
Q ss_pred eEEeEEEeeCCceeeeeeEEEeccCCccee
Q 026413 171 FGASYIQNVSPHLSLGGEVFWAGQHRKSGI 200 (239)
Q Consensus 171 ~~~syLQSVTprLsLG~E~~y~~~~~~s~~ 200 (239)
++++|-.-+-.||.||++..|........+
T Consensus 526 ~G~~~~~l~~~kL~lg~dYsys~~~s~~~~ 555 (637)
T PF11854_consen 526 AGFSYQGLMDDKLSLGLDYSYSDSDSDTDV 555 (637)
T ss_pred eceEeecccCccEEEeeeEEEecCccceEe
Confidence 345555558889999999999877655544
No 24
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=35.93 E-value=3.6e+02 Score=24.99 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=47.4
Q ss_pred ceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEec--------------CceEEEEEEeCCCeeEEeEEEeeCCce
Q 026413 118 RLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKG--------------KDYRTQFQFGNGALFGASYIQNVSPHL 183 (239)
Q Consensus 118 ~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G--------------~d~taslK~~n~~~~~~syLQSVTprL 183 (239)
..+.-+.|++.+++++-+.-+..- . ..++.++.. .+...++++.-|..+.++.-..++++|
T Consensus 210 g~~lG~~y~~~~~~~lG~sY~s~~--~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~ 284 (427)
T PF03349_consen 210 GFNLGALYKPNDNLRLGLSYRSPI--W---HDLDGDATFSISSSFAGPGAAGGSTADGEVDLDLPASLSLGVAYRFTDKL 284 (427)
T ss_dssp EEEEEEEEECCTTEEEEEEEE--B--E---EEEEEEEEEEEECTTCCCCH-TTSEEEEEEEEEB-EEEEEEEEEESSSSE
T ss_pred EEEEEEEEEeCCCeEEEEEEeeee--E---EeeeceEEEecccccccccccccccccceeeeeeceeEEEEEEEecCCCE
Confidence 556667888888777665554321 1 112222221 255667888889889999999999999
Q ss_pred eeeeeEEEec
Q 026413 184 SLGGEVFWAG 193 (239)
Q Consensus 184 sLG~E~~y~~ 193 (239)
.|.+++-|+.
T Consensus 285 ~l~~d~~~~~ 294 (427)
T PF03349_consen 285 LLSADYEWTD 294 (427)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 9999999973
No 25
>PLN00196 alpha-amylase; Provisional
Probab=34.63 E-value=20 Score=34.74 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=29.1
Q ss_pred CCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 29 MNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 29 ~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
++..||-.-+.|.+-.+-.+...-+||+|+|+.|.++..|
T Consensus 173 Ln~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f 212 (428)
T PLN00196 173 IDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAEV 212 (428)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHHH
Confidence 4556777667776554433356899999999999988766
No 26
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=33.75 E-value=3e+02 Score=23.36 Aligned_cols=82 Identities=5% Similarity=-0.060 Sum_probs=56.0
Q ss_pred ceeEEEEEEecCceEEEEEEeCCCeeEEeEEEeeCCceeeeeeEEEeccCCcceeEEEEEeeCCCeEEEeeeccc-----
Q 026413 146 SHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVMYFICVLH----- 220 (239)
Q Consensus 146 ~~~q~e~Dy~G~d~taslK~~n~~~~~~syLQSVTprLsLG~E~~y~~~~~~s~~s~aaRY~~~~~iasa~l~~~----- 220 (239)
..+.+...|-+...-..=.+.+.+-+.+.....+++++..=..+..+..+ .....+-.-|++++|.++.++..-
T Consensus 56 p~Y~FgA~y~~~~~~l~G~id~dG~l~ar~~~~~~~~~~~K~~~Q~~~~~-~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~ 134 (161)
T TIGR00989 56 PPYAFSALFGTNQLFAQGNLDNDGAVSTRLNYRWGDRTISKVQFQISGGQ-PDMCQFEHDHLGDDFSASLKAINPSFLEK 134 (161)
T ss_pred CCceeeeEecCCcEEEEEEeCCCCCEEEEEEEeeCcceeEEEEEEecCCC-CceEEEEEEecCCeEEEEEEEcCcccccc
Confidence 34667777776655444444444446667777888888877776665432 255556699999999999997752
Q ss_pred ----eeeeEEEE
Q 026413 221 ----MMFAVIWS 228 (239)
Q Consensus 221 ----~~~~sy~~ 228 (239)
.+-++|-|
T Consensus 135 ~~sGi~v~sylQ 146 (161)
T TIGR00989 135 GLTGIFVGSYLQ 146 (161)
T ss_pred cceEEEEEeeee
Confidence 45788876
No 27
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=29.77 E-value=3.4e+02 Score=22.88 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=32.3
Q ss_pred eEEeEEEeeCCceeeeeeEEEec-------------c--CCcceeEEEEEeeCC-CeEEEeeecc
Q 026413 171 FGASYIQNVSPHLSLGGEVFWAG-------------Q--HRKSGIGYAARYEND-KMVMYFICVL 219 (239)
Q Consensus 171 ~~~syLQSVTprLsLG~E~~y~~-------------~--~~~s~~s~aaRY~~~-~~iasa~l~~ 219 (239)
+.+.+--.+++||++|.|..+.. . .....+..++.|.-. ++.+.+.+..
T Consensus 167 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~gv~y~~~~~~~l~~~~~~ 231 (248)
T PF13557_consen 167 ANFALSYALTPKLSLGLEGYGYYDQLTDDKGNGVDNGSRQNSFYLGPGVSYQLSPNLSLDAGVGR 231 (248)
T ss_pred EEEEEEEEcCcceEEeEEeEEEEeeccccccCCccCCCccceEEEEEEEEEEEcCCeEEEEEEEe
Confidence 44455558999999999998432 1 123468888888754 4666655543
No 28
>PF03573 OprD: outer membrane porin, OprD family; InterPro: IPR005318 This family contains bacterial outer membrane porins with serine protease activity []. The serine peptidase domain belongs to MEROPS peptidase family S43 (clan PA(S)). However many of these proteins are not peptidases and are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the S43 family. The putative role of these protein could be to bind ligands and to facilitate the diffusion through the outer membrane.; GO: 0015288 porin activity, 0006810 transport, 0016021 integral to membrane; PDB: 3T24_A 3SZD_B 2Y0K_A 3SZV_A 3JTY_D 3T0S_A 2Y0H_A 3SY9_C 3SYB_A 3SY7_A ....
Probab=29.09 E-value=4.8e+02 Score=24.37 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=46.2
Q ss_pred eeEEEEEEec-CceEEEEEEeCC-C-----eeEEeEEEeeCCceeeeeeEEEeccCC----------cceeEEEEEeeCC
Q 026413 147 HGMINFDYKG-KDYRTQFQFGNG-A-----LFGASYIQNVSPHLSLGGEVFWAGQHR----------KSGIGYAARYEND 209 (239)
Q Consensus 147 ~~q~e~Dy~G-~d~taslK~~n~-~-----~~~~syLQSVTprLsLG~E~~y~~~~~----------~s~~s~aaRY~~~ 209 (239)
...+.++|+. ++.++++-..+- + ++.+.|-+.+.+.+.|..++-|.+.+. ....++.+-|+.+
T Consensus 177 ~~~~G~~y~~~~~l~~~~~~~~~~D~~~q~y~~~~y~~~l~~~~~l~~~~~~~~~~d~G~~~~g~iD~~~~~~~~~~~~~ 256 (391)
T PF03573_consen 177 FYFLGASYKFNKNLTLSLWYYNLEDYYNQYYLGANYKFPLGEGFKLTADLQYYRSRDDGDALAGSIDNNAWGAKLGYSYG 256 (391)
T ss_dssp EEEEEEEEEESTTEEEEEEEEEETTTEEEEEEEEEEEEEETTTEEEEEEEEEEEEEE-TTCTTSS-EEEEEEEEEEEEET
T ss_pred ceEcceEeecCCCeEEEEEeeechhHHHHhhheeEEEeecccceeEEEeeEEEEeecccccccCcccHHHhhheeEEEec
Confidence 3446778884 677777776663 2 356788888888877777777754321 1345555666666
Q ss_pred CeEEEeeecc
Q 026413 210 KMVMYFICVL 219 (239)
Q Consensus 210 ~~iasa~l~~ 219 (239)
.|.+++..+.
T Consensus 257 ~~~~~~ay~~ 266 (391)
T PF03573_consen 257 GHTFGLAYQK 266 (391)
T ss_dssp TEEEEEEEEE
T ss_pred ceEEEEEEEe
Confidence 6666654443
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=28.93 E-value=4.1e+02 Score=28.08 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=73.3
Q ss_pred cccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccc--cCCcceEEeEEEeCCce----EEEEEec-CCCce----
Q 026413 51 ELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK--IPTAHYEFGANYIDPKL----MLIGRVL-TDGRL---- 119 (239)
Q Consensus 51 ~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k--~p~~~Y~fga~y~~~k~----~l~g~vD-~~G~L---- 119 (239)
..--|+|+.+...+|.|++++-+...-+...| ...++ .-.-++.++++|--+.. +-.+-+| +|||.
T Consensus 618 g~k~g~r~~~~~~~nD~W~~~~~~~~~~~~tP---lrA~~~gv~~~~~~~~~~yr~~e~r~~~~~~~~~~fsDgN~R~~~ 694 (822)
T PRK14574 618 GNKVGARLSTWYDLNDHWRVGGQVERLAKDTP---LRALKNKVTANSASAYVFWKADDKRDAELSVTPSRFSDGNNRWEY 694 (822)
T ss_pred CCCcCceEEEEecCCCceeeeeeeecCCCCCC---HHHHHcCCcceecceEEEEEEccceEEEeeeeecccCCCchhhhh
Confidence 44567899888889999999988777544433 11122 12346777777775441 3333333 46765
Q ss_pred eEEEEeecC--CCceEEEEEEEcCCCCcceeEEEEEEecC--ceEEEEEEeCCCeeEEeEEEeeCCceeeeeeEEEeccC
Q 026413 120 NARVKCDLS--DNLSLKANAQLTNEPHMSHGMINFDYKGK--DYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQH 195 (239)
Q Consensus 120 ~ar~~~~l~--~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~--d~taslK~~n~~~~~~syLQSVTprLsLG~E~~y~~~~ 195 (239)
.+.+..++. +++.+-+...+..+ .++ +.+.+|-.+ |+++.+-+.-.=++=-+|=-+.+.+|.+|+=..||..-
T Consensus 695 ~~~~~~rl~~~p~~~~d~~~~~~~s-~Ns--~~~~~YfNP~~d~s~~~~l~~~~~~~r~y~~~~~Q~l~~~~G~Y~Q~~f 771 (822)
T PRK14574 695 EFNGRQRIWTGPYLTADFNLGLAAS-QNS--KEDVIYYNPKRDFAYVPAVTLNHIMYRRYKTIWSQQVQLGVGGYWEKNY 771 (822)
T ss_pred hcceeEEeecCCeEEEecceEEeec-cCC--CCCCCccCcchhcccCcccceeeeeeeecccceeEEEEecccchhhccc
Confidence 333444444 33333322222211 111 124455443 22222211110011124444666666666666666432
Q ss_pred ---CcceeEEEEEee
Q 026413 196 ---RKSGIGYAARYE 207 (239)
Q Consensus 196 ---~~s~~s~aaRY~ 207 (239)
....++|.=||.
T Consensus 772 ~~~~~~~~~Y~h~w~ 786 (822)
T PRK14574 772 GNGLVTTAGYGQRVQ 786 (822)
T ss_pred CCCCcceeeeeeEEE
Confidence 233455555554
No 30
>PF05420 BCSC_C: Cellulose synthase operon protein C C-terminus (BCSC_C); InterPro: IPR008410 This entry contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown [].; GO: 0030244 cellulose biosynthetic process, 0019867 outer membrane
Probab=27.24 E-value=1.3e+02 Score=28.43 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=32.4
Q ss_pred EEeEEEeeCCceeeeeeEEEeccC--CcceeEEEEEeeCCCe
Q 026413 172 GASYIQNVSPHLSLGGEVFWAGQH--RKSGIGYAARYENDKM 211 (239)
Q Consensus 172 ~~syLQSVTprLsLG~E~~y~~~~--~~s~~s~aaRY~~~~~ 211 (239)
.+.--..|+|+|.||+++-+++.. .++...+..||.-++|
T Consensus 301 ~a~~eyrls~~~~lGg~~~~~~s~dY~~~~~~lylRY~f~~~ 342 (342)
T PF05420_consen 301 RAAVEYRLSPHWFLGGGLDIDNSGDYNPSHAMLYLRYSFDPW 342 (342)
T ss_pred EEEEEEEecCCEEEEEEEehhhcCCCCcceEEEEEEEeccCC
Confidence 345566899999999999999875 3678889999987665
No 31
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=25.77 E-value=4.5e+02 Score=25.74 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=28.4
Q ss_pred EEEEEeCCCeeEEeEEEeeCCceeeeeeEEEec
Q 026413 161 TQFQFGNGALFGASYIQNVSPHLSLGGEVFWAG 193 (239)
Q Consensus 161 aslK~~n~~~~~~syLQSVTprLsLG~E~~y~~ 193 (239)
+.+++.=|..+.+++...|.++|++.+++.|-.
T Consensus 278 ~~~~l~lP~~~el~~~~~~~d~w~~~~s~~wT~ 310 (440)
T COG2067 278 GKLTLSLPASAELSGQHKVADQWAIHGSVKWTD 310 (440)
T ss_pred ceEEEecCcEEEEeeeeccCCCeEEEEEEEEee
Confidence 677777788888888888999999999999863
No 32
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=23.40 E-value=3e+02 Score=20.06 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=18.0
Q ss_pred ecCCCceeEEEEe-ecCCCceEEEEEEEcCCCCcceeEEEEEE
Q 026413 113 VLTDGRLNARVKC-DLSDNLSLKANAQLTNEPHMSHGMINFDY 154 (239)
Q Consensus 113 vD~~G~L~ar~~~-~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy 154 (239)
.|++|+.-.+... .....=......+|.++...-.+.+++.+
T Consensus 43 ~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 43 KDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred ECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 3445555555444 33333344444555444334455566666
No 33
>PRK12395 maltoporin; Provisional
Probab=23.25 E-value=7e+02 Score=24.30 Aligned_cols=38 Identities=13% Similarity=0.332 Sum_probs=27.2
Q ss_pred eEEEeeCCceeeeeeEEEeccC-------CcceeEEEEE--eeCCCe
Q 026413 174 SYIQNVSPHLSLGGEVFWAGQH-------RKSGIGYAAR--YENDKM 211 (239)
Q Consensus 174 syLQSVTprLsLG~E~~y~~~~-------~~s~~s~aaR--Y~~~~~ 211 (239)
...=.+++++.++.+++|+... ....+|.++| |.-.+.
T Consensus 291 ~G~~~~sd~~~~~~~l~Y~~~~d~~~~~~~~~~~s~~vRP~Y~wnd~ 337 (419)
T PRK12395 291 TGLIPITDKFSFNHVLTWGSANDITEYTDKTNLISLVGRAQYQFTQY 337 (419)
T ss_pred EeeeccCCCeeEEEEEEEecccccCCCCCCcEEEEEEEeeEEEECCc
Confidence 4445899999999999998642 2346788888 654443
No 34
>PF04357 DUF490: Family of unknown function (DUF490); InterPro: IPR007452 This family contains several proteins of uncharacterised function.
Probab=22.75 E-value=5.7e+02 Score=23.20 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=31.5
Q ss_pred ceEEeEEEeCCceEEEEE--ecCCCc--eeEEEEeecCCCceEEEEEEEc
Q 026413 95 HYEFGANYIDPKLMLIGR--VLTDGR--LNARVKCDLSDNLSLKANAQLT 140 (239)
Q Consensus 95 ~Y~fga~y~~~k~~l~g~--vD~~G~--L~ar~~~~l~~~l~~K~~~ql~ 140 (239)
...+|-.. ++++.+-.. ++-.+. =..++.|++++++.+++.....
T Consensus 317 ~~~~gk~l-~~~l~i~~~~~~~~~~~~~~~~~l~y~l~~~~~l~~~~~~~ 365 (379)
T PF04357_consen 317 SVTVGKYL-SDRLYISYQFGVDLGGSQTGEFSLEYRLNPNLSLRGSSDSG 365 (379)
T ss_pred EEEEEEec-CCCEEEEEEEeecCCCCceEEEEEEEEEcCCEEEEEEEEcC
Confidence 45555444 777777777 774433 3678999999999988877433
No 35
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only]
Probab=22.41 E-value=43 Score=29.15 Aligned_cols=16 Identities=31% Similarity=0.792 Sum_probs=13.6
Q ss_pred eEEEEEcCceeeeccC
Q 026413 224 AVIWSITPACVTSCRQ 239 (239)
Q Consensus 224 ~sy~~~~~~~~~~~~~ 239 (239)
-|||+|.|+-.+-|.+
T Consensus 69 NSyW~Ik~~~~~~c~r 84 (211)
T KOG3358|consen 69 NSYWRIKPVSGTTCER 84 (211)
T ss_pred cceEEEecCCCCcccC
Confidence 4899999998888864
Done!