Query 026413
Match_columns 239
No_of_seqs 106 out of 256
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:01:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emn_X Voltage-dependent anion 99.4 1E-10 3.5E-15 105.5 25.3 189 29-230 11-210 (295)
2 3emn_X Voltage-dependent anion 98.9 5.6E-07 1.9E-11 81.0 23.2 135 95-230 123-263 (295)
3 3dwo_X Probable outer membrane 34.6 2.6E+02 0.0091 25.4 14.8 34 160-193 277-310 (451)
4 2jmm_A Outer membrane protein 32.9 44 0.0015 25.7 4.1 36 172-207 111-149 (156)
5 3pgu_A Long-chain fatty acid t 32.5 94 0.0032 28.3 6.8 31 162-192 266-296 (427)
6 2x9k_A OMPG, outer membrane pr 32.1 80 0.0027 27.8 6.0 76 120-195 154-260 (280)
7 3sy9_A Histidine porin OPDC; b 30.7 3.1E+02 0.011 25.0 12.5 20 199-218 260-279 (430)
8 3dhu_A Alpha-amylase; structur 28.8 11 0.00039 34.2 -0.1 40 27-68 142-181 (449)
9 1hvx_A Alpha-amylase; hydrolas 25.9 12 0.0004 35.0 -0.6 41 28-68 203-243 (515)
10 2vdf_A OPCA, outer membrane pr 25.9 55 0.0019 28.3 3.6 128 95-231 9-157 (253)
11 1gcy_A Glucan 1,4-alpha-maltot 25.5 12 0.00042 35.0 -0.5 41 26-66 160-200 (527)
12 1g94_A Alpha-amylase; beta-alp 25.2 15 0.00052 33.5 0.0 39 28-67 144-182 (448)
13 2aaa_A Alpha-amylase; glycosid 24.8 16 0.00055 33.6 0.1 41 28-68 175-215 (484)
14 3bs0_A TODX; beta barrel, oute 22.9 4E+02 0.014 23.7 10.8 29 165-193 275-303 (439)
15 1jae_A Alpha-amylase; glycosid 22.9 15 0.00053 33.7 -0.4 40 28-68 155-194 (471)
16 1ht6_A AMY1, alpha-amylase iso 22.5 12 0.00043 33.6 -1.1 39 28-66 149-187 (405)
17 1qjp_A Outer membrane protein 22.3 2.4E+02 0.0083 20.9 11.2 23 171-193 123-145 (171)
18 1cyg_A Cyclodextrin glucanotra 22.1 24 0.00081 34.2 0.7 38 28-66 195-232 (680)
19 1ud2_A Amylase, alpha-amylase; 22.1 11 0.00036 34.8 -1.7 41 28-68 200-240 (480)
20 2z1k_A (NEO)pullulanase; hydro 21.0 22 0.00074 32.5 0.2 39 28-67 172-210 (475)
21 3bh4_A Alpha-amylase; calcium, 20.8 12 0.00041 34.4 -1.6 41 28-68 200-240 (483)
22 2wc7_A Alpha amylase, catalyti 20.8 26 0.00088 32.2 0.6 39 28-67 180-218 (488)
23 1wpc_A Glucan 1,4-alpha-maltoh 20.1 13 0.00043 34.3 -1.6 41 28-68 205-245 (485)
No 1
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=99.42 E-value=1e-10 Score=105.53 Aligned_cols=189 Identities=13% Similarity=0.166 Sum_probs=137.3
Q ss_pred CCCCCCCCHHHHHHHHhhccC-ccccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCc-
Q 026413 29 MNLPCPIPYEEIHREALMSLK-PELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK- 106 (239)
Q Consensus 29 ~~L~nPG~~E~l~re~k~~l~-~~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k- 106 (239)
...-+|+.|-||-|.+|++|. .+.|+..+||+.-.-++-+.++=+-.-.... ..-.=.+.+.|...+
T Consensus 11 ~~~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~-----------~~v~g~le~kyk~~~~ 79 (295)
T 3emn_X 11 GSMAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTET-----------TKVNGSLETKYRWTEY 79 (295)
T ss_dssp --CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTT-----------CCEEEEEEEEEEETTT
T ss_pred CCcCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCC-----------CceeeEEEEEEEecCC
Confidence 356789999999999998764 4677779999976544433333222211100 011346777887776
Q ss_pred -eEEEEEecCCCceeEEEEee--cCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEE--E--eCCCeeEEeEEEee
Q 026413 107 -LMLIGRVLTDGRLNARVKCD--LSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQ--F--GNGALFGASYIQNV 179 (239)
Q Consensus 107 -~~l~g~vD~~G~L~ar~~~~--l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK--~--~n~~~~~~syLQSV 179 (239)
+.+-=.+|++++|...+... +.+.+.+-+.+.+.++......+++++|+.+++++... + .||.+...-.+ -
T Consensus 80 g~t~~~kw~t~n~l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~--g 157 (295)
T 3emn_X 80 GLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVL--G 157 (295)
T ss_dssp TEEEEEEEETTSCEEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEE--E
T ss_pred cEEEEEEEeCCCcEEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEE--e
Confidence 56666999999999887654 78888877777775543344688999999999999543 3 66754332222 3
Q ss_pred CCceeeeeeEEEeccCC-cceeEEEEEeeCCCeEEEeeeccc-eeeeEEEEEc
Q 026413 180 SPHLSLGGEVFWAGQHR-KSGIGYAARYENDKMVMYFICVLH-MMFAVIWSIT 230 (239)
Q Consensus 180 TprLsLG~E~~y~~~~~-~s~~s~aaRY~~~~~iasa~l~~~-~~~~sy~~~~ 230 (239)
+|+|++|+|+.|..... .+..++++||..++|+++++++.. .+.+||||.-
T Consensus 158 ~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~~~~~~aSy~qkv 210 (295)
T 3emn_X 158 YEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKV 210 (295)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEETTTEEEEEEEEEC
T ss_pred eCCEEEEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECCCCeEEEEEEEEC
Confidence 69999999999998644 467999999999999999999875 9999999975
No 2
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=98.89 E-value=5.6e-07 Score=81.02 Aligned_cols=135 Identities=13% Similarity=0.190 Sum_probs=104.3
Q ss_pred ceEEeEEEeCCceEEEEEecCC-C--ceeEEEEeecCCCceEEEEEEEcC-CCCcceeEEEEEEecCceEEEEEEeCCCe
Q 026413 95 HYEFGANYIDPKLMLIGRVLTD-G--RLNARVKCDLSDNLSLKANAQLTN-EPHMSHGMINFDYKGKDYRTQFQFGNGAL 170 (239)
Q Consensus 95 ~Y~fga~y~~~k~~l~g~vD~~-G--~L~ar~~~~l~~~l~~K~~~ql~~-~~~~~~~q~e~Dy~G~d~taslK~~n~~~ 170 (239)
.-++.+.|..+..-+-++||-+ . .+++..... .++|.+=..+...- ........+-+.|+++||++++++.|+..
T Consensus 123 s~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g-~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~~~~ 201 (295)
T 3emn_X 123 NAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG-YEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTE 201 (295)
T ss_dssp EEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEETTTE
T ss_pred ceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe-eCCEEEEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECCCCe
Confidence 5688888998887776666552 1 333332221 36666555544332 22345667889999999999999999888
Q ss_pred eEEeEEEeeCCceeeeeeEEEeccCCcceeEEEEEeeC-CCeEEEeeeccc-eeeeEEEEEc
Q 026413 171 FGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYEN-DKMVMYFICVLH-MMFAVIWSIT 230 (239)
Q Consensus 171 ~~~syLQSVTprLsLG~E~~y~~~~~~s~~s~aaRY~~-~~~iasa~l~~~-~~~~sy~~~~ 230 (239)
+.+||.|.|++++++|+|+.|....++..+++++||.- +++++-|++... -+-+.|++.-
T Consensus 202 ~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakvn~~g~v~~~y~~kl 263 (295)
T 3emn_X 202 FGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTL 263 (295)
T ss_dssp EEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEEETTSEEEEEEEEEE
T ss_pred EEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEECCCCEEEEEEEEec
Confidence 99999999999999999999998778899999999987 589999999998 7888887653
No 3
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=34.62 E-value=2.6e+02 Score=25.36 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=29.1
Q ss_pred EEEEEEeCCCeeEEeEEEeeCCceeeeeeEEEec
Q 026413 160 RTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAG 193 (239)
Q Consensus 160 taslK~~n~~~~~~syLQSVTprLsLG~E~~y~~ 193 (239)
..+.++.-|..+.++.-..++++|.|.+++.|..
T Consensus 277 ~~~~~~~lP~~~~lg~~~~~~~~~~l~~d~~~~~ 310 (451)
T 3dwo_X 277 SASARLDIPAYASLDWVHQFNDRLSLGASATWTE 310 (451)
T ss_dssp EEEEECCBCCEEEEEEEEECSSSEEEEEEEEEEC
T ss_pred ceEEEecCCcEEEEEEEEEeCCCEEEEEEEEEEE
Confidence 4566777788888999999999999999999984
No 4
>2jmm_A Outer membrane protein A; NMR {Escherichia coli}
Probab=32.92 E-value=44 Score=25.67 Aligned_cols=36 Identities=17% Similarity=0.503 Sum_probs=25.5
Q ss_pred EEeEE--EeeCCceeeeeeEEEecc-CCcceeEEEEEee
Q 026413 172 GASYI--QNVSPHLSLGGEVFWAGQ-HRKSGIGYAARYE 207 (239)
Q Consensus 172 ~~syL--QSVTprLsLG~E~~y~~~-~~~s~~s~aaRY~ 207 (239)
++.|- +.||++|+|.+|..|... .....++++.+|.
T Consensus 111 Gvey~~~~~~~~~~~~~~eY~~~~~~~~~~~~~~Gl~Y~ 149 (156)
T 2jmm_A 111 GVEYVIRRRITPEIATRLEYQWTNNASDNGMLSLGVSYR 149 (156)
T ss_dssp EEEEECSSSCSSSEEEEEEEEEESSSSCEEEEEEEEEEE
T ss_pred EEEEeeccccCcCeEEEEEEEEEcccCcCCEEEEEEEEE
Confidence 44544 459999999999999754 2344667777775
No 5
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=32.51 E-value=94 Score=28.27 Aligned_cols=31 Identities=10% Similarity=0.187 Sum_probs=26.2
Q ss_pred EEEEeCCCeeEEeEEEeeCCceeeeeeEEEe
Q 026413 162 QFQFGNGALFGASYIQNVSPHLSLGGEVFWA 192 (239)
Q Consensus 162 slK~~n~~~~~~syLQSVTprLsLG~E~~y~ 192 (239)
++++.-|..+.++.-..+++||.|++++.|.
T Consensus 266 ~~~~~lP~~~~~g~~~~~~~~~~l~~d~~~~ 296 (427)
T 3pgu_A 266 YLTLNLPEMWEVSGYNRVDPQWAIHYSLAYT 296 (427)
T ss_dssp BEEEEECEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEecCCcEEEEEEEEecCCCEEEEEEEEEE
Confidence 4455557778889999999999999999997
No 6
>2x9k_A OMPG, outer membrane protein G; transport protein, ION transport; HET: BOG; 2.18A {Escherichia coli} PDB: 2f1c_X* 2iwv_A* 2iww_A* 2jqy_A 2wvp_A*
Probab=32.13 E-value=80 Score=27.78 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=47.6
Q ss_pred eEEEEeecCCCceEEEEEEEc------C---CCCcceeEE--EEEEecCceEEE------EEE-eC----C---------
Q 026413 120 NARVKCDLSDNLSLKANAQLT------N---EPHMSHGMI--NFDYKGKDYRTQ------FQF-GN----G--------- 168 (239)
Q Consensus 120 ~ar~~~~l~~~l~~K~~~ql~------~---~~~~~~~q~--e~Dy~G~d~tas------lK~-~n----~--------- 168 (239)
..-+.|.+++++.+|++.=+. . +..+...|+ -+..+-..++.+ |-- .+ .
T Consensus 154 E~Gv~Yk~~d~~s~k~~yY~d~~~~~~~~~~~~ef~~qQiR~ylp~~~~~~~ItPy~R~~L~~~~~~~~~~~~~~~~~~~ 233 (280)
T 2x9k_A 154 ETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGADF 233 (280)
T ss_dssp EEEEEEECSSSBEEEEEEEEEEEECSSTTCCCSCEEEEEEEEECCEEETTEEEEEEEEEEEEEEECTTSSSSSCCCCCCE
T ss_pred ecceEEEecCCceEEEEEEEecccccCCccccccchhhheeEEEeeecCCEEECceEEEEeeccccccccccchhccCCc
Confidence 456889999999999976543 1 111233333 334444444433 211 11 1
Q ss_pred CeeEEeEEEeeCCceeeeeeEEEeccC
Q 026413 169 ALFGASYIQNVSPHLSLGGEVFWAGQH 195 (239)
Q Consensus 169 ~~~~~syLQSVTprLsLG~E~~y~~~~ 195 (239)
.-+++.+-+.|+|+|+|.+|..|+...
T Consensus 234 ~R~Gl~~~Y~is~~lsl~~EyaYE~~~ 260 (280)
T 2x9k_A 234 NRVGLFYGYDFQNGLSVSLEYAFEWQD 260 (280)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEEEEC
T ss_pred cEEEEEEeeecCCceEEEEEEEEEEEc
Confidence 137889999999999999999998543
No 7
>3sy9_A Histidine porin OPDC; beta-barrel, channel, bacterial outer membrane, membrane Pro; HET: C8E BOG; 2.80A {Pseudomonas aeruginosa}
Probab=30.70 E-value=3.1e+02 Score=25.03 Aligned_cols=20 Identities=0% Similarity=-0.180 Sum_probs=10.1
Q ss_pred eeEEEEEeeCCCeEEEeeec
Q 026413 199 GIGYAARYENDKMVMYFICV 218 (239)
Q Consensus 199 ~~s~aaRY~~~~~iasa~l~ 218 (239)
..++.+-|+.+.+.+++..+
T Consensus 260 ~~s~~~~~~~g~ht~~l~Yq 279 (430)
T 3sy9_A 260 TYSLHFAVGYRQHTVTAVLQ 279 (430)
T ss_dssp EEEEEEEEEETTEEEEEEEE
T ss_pred HHhhhheEEECCEEEEEEEE
Confidence 34444455555555555444
No 8
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=28.81 E-value=11 Score=34.17 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=28.5
Q ss_pred ccCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 27 DYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 27 ~~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
..++..||-.-+.|..-++.. ..+ +||||+|+.|.+.+.|
T Consensus 142 ~dLn~~np~Vr~~l~~~l~~w-~~~-vDGfRlDaa~~~~~~f 181 (449)
T 3dhu_A 142 KDLDYGHHELWQYQIDTLLYW-SQF-VDGYRCDVAPLVPLDF 181 (449)
T ss_dssp EEBCTTSHHHHHHHHHHHHHH-TTT-CSEEEETTGGGSCHHH
T ss_pred CccCCCCHHHHHHHHHHHHHH-HHh-CCEEEEEChhhCCHHH
Confidence 345677887777777666653 445 9999999999876544
No 9
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=25.93 E-value=12 Score=35.00 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=30.6
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
.++..||-.-+.|..-++-.+...-+||||+|..|.+...|
T Consensus 203 dLn~~np~V~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f 243 (515)
T 1hvx_A 203 DLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSF 243 (515)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCTTH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEehhhhcCHHH
Confidence 45667777777776665543456789999999999988755
No 10
>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} SCOP: f.4.4.2 PDB: 1k24_A
Probab=25.91 E-value=55 Score=28.29 Aligned_cols=128 Identities=13% Similarity=0.176 Sum_probs=70.1
Q ss_pred ceEEeEEEeCCce---EEEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecC-------ceEEEEE
Q 026413 95 HYEFGANYIDPKL---MLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGK-------DYRTQFQ 164 (239)
Q Consensus 95 ~Y~fga~y~~~k~---~l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~-------d~taslK 164 (239)
-|..++-|...+. +|.=+-+..-+|++|+.+.+.++..+|+..-...++ .||... --+-+-|
T Consensus 9 efTV~t~y~~e~~~~~~lkek~~~~~~i~~rad~pf~drH~~r~e~~y~r~K--------~D~~~~~~d~~~~G~~~n~~ 80 (253)
T 2vdf_A 9 EFTVHTDLSSISSTRAFLKEKHKAAKHIGVRADIPFDANQGIRLEAGFGRSK--------KNIINLETDENKLGKTKNVK 80 (253)
T ss_dssp EEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEE--------EEEEECCCHHHHTSSCCCCC
T ss_pred cEEEeccchhhhHHHHHHHHhhccCcccccccccccccccceeEEeeeccCc--------cccccccccccccCcccchh
Confidence 6788888877652 444444434567899999999999888877655431 133211 1122234
Q ss_pred EeCCC------e-eEEeEEEeeCCcee--eeeeEEEeccCC-cceeEEEEEeeCCCeEEEeeeccc-eeeeEEEEEcC
Q 026413 165 FGNGA------L-FGASYIQNVSPHLS--LGGEVFWAGQHR-KSGIGYAARYENDKMVMYFICVLH-MMFAVIWSITP 231 (239)
Q Consensus 165 ~~n~~------~-~~~syLQSVTprLs--LG~E~~y~~~~~-~s~~s~aaRY~~~~~iasa~l~~~-~~~~sy~~~~~ 231 (239)
..|+. + -+--|-|.+..++. .|+++-|..... ...--.+.-|...+|.+.+..--. +| -.=|.|+|
T Consensus 81 ~~ng~~~~~~dvyAgY~YT~p~~d~~~~r~G~GlGy~~~kd~l~~~k~a~~~~r~~~yaq~~a~~~~~L-g~gw~i~P 157 (253)
T 2vdf_A 81 LPTGVPENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHTLHSSRQSWLAKVHADLLSQL-GNGWYINP 157 (253)
T ss_dssp CCCSEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEC------CEEEEEEEEEEEEEEEEEEE-ETTEEEEE
T ss_pred cccCCccceeEEEeeeeeccccccccceeeecccchhhhhhhhhcccCCCcchhhhhhhhhhhhhHhhc-CCCceeCc
Confidence 55542 2 24578899999855 677777753211 111225555666666665544333 33 23344444
No 11
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=25.47 E-value=12 Score=35.01 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=30.0
Q ss_pred hccCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCC
Q 026413 26 VDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQ 66 (239)
Q Consensus 26 ~~~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~ 66 (239)
...++..||-..+.|..-++-.+...-+||||+|+.|.+..
T Consensus 160 ~~dLn~~np~Vr~~i~~~~~~w~~~~gvDGfRlDa~~~i~~ 200 (527)
T 1gcy_A 160 DADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAP 200 (527)
T ss_dssp TTBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCH
T ss_pred CCccccCCHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH
Confidence 34456677777777776666444558999999999998764
No 12
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=25.19 E-value=15 Score=33.50 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=28.7
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCC
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQK 67 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~ 67 (239)
.++..||-.-+.|..-++-.+ ..-+||||+|+.|.+.+.
T Consensus 144 dln~~np~Vr~~i~~~~~~w~-~~gvDGfR~D~~~~i~~~ 182 (448)
T 1g94_A 144 DLDTASNYVQNTIAAYINDLQ-AIGVKGFRFDASKHVAAS 182 (448)
T ss_dssp EBCTTSHHHHHHHHHHHHHHH-HHTCCEEEEETGGGSCHH
T ss_pred CcCCCCHHHHHHHHHHHHHHH-hcCCCEEeecccccCCHH
Confidence 356677777777766665444 578999999999987754
No 13
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=24.78 E-value=16 Score=33.58 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=28.5
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
.++..||-.-+.|..-++-.+...-+||||+|+.|.+...|
T Consensus 175 dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~~~~i~~~f 215 (484)
T 2aaa_A 175 DLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDF 215 (484)
T ss_dssp BBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGG
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCCEEEecccccCCHHH
Confidence 45667776666655545433444689999999999987654
No 14
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=22.91 E-value=4e+02 Score=23.68 Aligned_cols=29 Identities=10% Similarity=0.064 Sum_probs=25.1
Q ss_pred EeCCCeeEEeEEEeeCCceeeeeeEEEec
Q 026413 165 FGNGALFGASYIQNVSPHLSLGGEVFWAG 193 (239)
Q Consensus 165 ~~n~~~~~~syLQSVTprLsLG~E~~y~~ 193 (239)
+.-|..+.++....+++||.|++++.|..
T Consensus 275 ~~lP~~~~~g~~~~~~~~~~l~~d~~~~~ 303 (439)
T 3bs0_A 275 FEMPASLTLGLAHQFNERWVVAADIKRAY 303 (439)
T ss_dssp CCCCCEEEEEEEEESSSSEEEEEEEEEEC
T ss_pred cCCCcEEEEeEEEEeCCCEEEEEEEEEEE
Confidence 44577789999999999999999999874
No 15
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=22.89 E-value=15 Score=33.71 Aligned_cols=40 Identities=13% Similarity=-0.037 Sum_probs=29.5
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
.++..||-.-+.|..-++..+ ..-+||||+|+.|.+.+.|
T Consensus 155 dLn~~np~V~~~i~~~~~~w~-~~gvDGfRlDa~~~i~~~f 194 (471)
T 1jae_A 155 DLNQGSDYVRGVLIDYMNHMI-DLGVAGFRVDAAKHMSPGD 194 (471)
T ss_dssp BBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCHHH
T ss_pred ccCcCCHHHHHHHHHHHHHHH-HcCCCEEEeechhcCCHHH
Confidence 356677777777766665444 5789999999999987653
No 16
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=22.45 E-value=12 Score=33.63 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=27.8
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCC
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQ 66 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~ 66 (239)
.++..||-.-+.|..-++-.+...-+||||+|..|.+..
T Consensus 149 dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~ 187 (405)
T 1ht6_A 149 DIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFARGYSP 187 (405)
T ss_dssp BBCTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCH
T ss_pred ccCcCCHHHHHHHHHHHHHHHhccCCCEEEEeccccCCH
Confidence 345667776666666665434457999999999998754
No 17
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
Probab=22.31 E-value=2.4e+02 Score=20.92 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=17.5
Q ss_pred eEEeEEEeeCCceeeeeeEEEec
Q 026413 171 FGASYIQNVSPHLSLGGEVFWAG 193 (239)
Q Consensus 171 ~~~syLQSVTprLsLG~E~~y~~ 193 (239)
+++-.=-.||++|+|.+|..|..
T Consensus 123 ~G~G~~y~~~~~~~~~~ey~~~~ 145 (171)
T 1qjp_A 123 FAGGVEYAITPEIATRLEYQWTN 145 (171)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEeeEEEEECcceEEEEEEEEEe
Confidence 33344446999999999999976
No 18
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=22.13 E-value=24 Score=34.24 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=29.3
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCC
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQ 66 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~ 66 (239)
.++..||-..+.|..-++-.+. .-+||||+|..|.+.+
T Consensus 195 DLn~~np~Vr~~i~~~~~~Wl~-~GVDGfRlDa~~~i~~ 232 (680)
T 1cyg_A 195 DLNHQNPVIDRYLKDAVKMWID-MGIDGIRMDAVKHMPF 232 (680)
T ss_dssp EBCTTSHHHHHHHHHHHHHHHT-TTCCEEEESCGGGSCS
T ss_pred ccccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCCH
Confidence 4677888777777766654455 8899999999998865
No 19
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=22.06 E-value=11 Score=34.75 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=30.0
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
.++..||-..+.|..-++-.+...-+||||+|+.|.+...|
T Consensus 200 dLn~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~~~f 240 (480)
T 1ud2_A 200 NIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWY 240 (480)
T ss_dssp EECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHccCCCEEEEcchhhCCHHH
Confidence 45667777777776655543445789999999999987654
No 20
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=20.97 E-value=22 Score=32.49 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=29.4
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCC
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQK 67 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~ 67 (239)
.++..||-.-+.|..-++-.+ ..-+||||+|..+.+...
T Consensus 172 dln~~np~v~~~i~~~~~~w~-~~gvDGfR~D~~~~~~~~ 210 (475)
T 2z1k_A 172 KLKVETPAVREYLLAVAEHWI-RFGVDGWRLDVPNEIPDP 210 (475)
T ss_dssp BBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCCCH
T ss_pred ccccCCHHHHHHHHHHHHHHH-HCCCCEEeecccccCCHH
Confidence 566778877676666555445 788999999999987664
No 21
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=20.83 E-value=12 Score=34.44 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=29.7
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
.++..||-..+.|..-++-.+...-+||||+|+.|.+...|
T Consensus 200 dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~~~f 240 (483)
T 3bh4_A 200 DVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSF 240 (483)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEechhcCCHHH
Confidence 45667777666666655543445789999999999987654
No 22
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=20.78 E-value=26 Score=32.22 Aligned_cols=39 Identities=23% Similarity=0.106 Sum_probs=29.4
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCC
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQK 67 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~ 67 (239)
.++..||-.-+.|..-++--+ ..-+||||+|+.+.+...
T Consensus 180 dln~~np~vr~~i~~~~~~Wl-~~gvDGfR~D~~~~i~~~ 218 (488)
T 2wc7_A 180 EFNHDNPEVREYIMEIAEYWL-KFGIDGWRLDVPFEIKTP 218 (488)
T ss_dssp BBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCCCT
T ss_pred eeccCCHHHHHHHHHHHHHHH-HCCCCEEEEecccccChH
Confidence 467778877666666555445 788999999999988765
No 23
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=20.08 E-value=13 Score=34.29 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=30.2
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
.++..||-..+.|..-++-.+...-+||||+|+.|.+...|
T Consensus 205 dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~~~f 245 (485)
T 1wpc_A 205 DIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSF 245 (485)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCEEEhHhhhcCCHHH
Confidence 45667887777776655543446789999999999987644
Done!