Query 026413
Match_columns 239
No_of_seqs 106 out of 256
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 13:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026413.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026413hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gcya2 c.1.8.1 (A:1-357) G4-a 42.9 2 0.00014 35.0 -0.5 40 28-67 162-201 (357)
2 d2aaaa2 c.1.8.1 (A:1-381) Fung 38.7 3.1 0.00023 34.7 0.0 40 29-68 176-215 (381)
3 d1qjpa_ f.4.1.1 (A:) Outer mem 33.8 70 0.0051 22.2 11.1 22 172-193 124-145 (171)
4 d1hvxa2 c.1.8.1 (A:1-393) Bact 30.7 4 0.00029 33.8 -0.6 40 29-68 204-243 (393)
5 d2guya2 c.1.8.1 (A:1-381) Fung 29.9 4.8 0.00035 33.4 -0.2 41 28-68 175-215 (381)
6 d2d3na2 c.1.8.1 (A:5-398) Bact 28.3 3.2 0.00024 34.4 -1.6 41 29-69 202-242 (394)
7 d1e43a2 c.1.8.1 (A:1-393) Bact 27.2 3.5 0.00025 34.3 -1.6 40 29-68 201-240 (393)
8 d1j0ha3 c.1.8.1 (A:124-505) Ne 23.2 5.5 0.0004 32.5 -1.1 43 26-68 172-214 (382)
9 d1jaea2 c.1.8.1 (A:1-378) Anim 23.1 7.1 0.00052 32.0 -0.4 40 28-68 155-194 (378)
10 d1p4ta_ f.4.1.1 (A:) Outer mem 19.8 1.3E+02 0.0095 20.6 10.6 23 171-193 110-132 (155)
No 1
>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
Probab=42.95 E-value=2 Score=34.96 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=30.6
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCC
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQK 67 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~ 67 (239)
.++..||..-+.+...++..+...-+||||+|..|.+.+.
T Consensus 162 dln~~np~v~~~~~~~~~~~~~~~giDGfR~Daa~~i~~~ 201 (357)
T d1gcya2 162 DLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPE 201 (357)
T ss_dssp BBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhcCCHH
Confidence 3567788877777776665566788999999999987654
No 2
>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]}
Probab=38.65 E-value=3.1 Score=34.71 Aligned_cols=40 Identities=13% Similarity=0.028 Sum_probs=31.7
Q ss_pred CCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 29 MNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 29 ~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
++..||...+.+.+.++..+...-+||||+|..+.+.+.|
T Consensus 176 ln~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~~~~f 215 (381)
T d2aaaa2 176 LDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDF 215 (381)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGG
T ss_pred ccccchhhhhHHhhhhhhcccceeeeeeeecccccccHHH
Confidence 5667888888888877665566789999999999877654
No 3
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=33.76 E-value=70 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=16.7
Q ss_pred EEeEEEeeCCceeeeeeEEEec
Q 026413 172 GASYIQNVSPHLSLGGEVFWAG 193 (239)
Q Consensus 172 ~~syLQSVTprLsLG~E~~y~~ 193 (239)
++..--.|+|+|+|++|.-|..
T Consensus 124 G~G~~y~i~~~~~l~~ey~~~~ 145 (171)
T d1qjpa_ 124 AGGVEYAITPEIATRLEYQWTN 145 (171)
T ss_dssp EEEEEEEEETTEEEEEEEEEEC
T ss_pred EeEEEEEeCCCEEEEEEEEEEe
Confidence 3344448999999999998864
No 4
>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=30.71 E-value=4 Score=33.80 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=30.0
Q ss_pred CCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 29 MNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 29 ~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
++..||-..+.|.+-.+-.+...-+||||+|..|.+...|
T Consensus 204 ln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a~~i~~~f 243 (393)
T d1hvxa2 204 LDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSF 243 (393)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCTTH
T ss_pred eccCChHHHHHHHHHHHHHHHhhCCceeeeeccccCChhH
Confidence 5567777777777666543455799999999999887665
No 5
>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}
Probab=29.90 E-value=4.8 Score=33.40 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=32.1
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
.++..||-.-+.+.+.++..+...-+||||+|..+.+.+.|
T Consensus 175 dln~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~~~f 215 (381)
T d2guya2 175 DLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDF 215 (381)
T ss_dssp BBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGG
T ss_pred hhccccHHHHHHHHHHhhhccccccccceeeehHhhcCHHH
Confidence 36777888888887777654566789999999999887644
No 6
>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]}
Probab=28.27 E-value=3.2 Score=34.36 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCee
Q 026413 29 MNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFS 69 (239)
Q Consensus 29 ~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~Fq 69 (239)
++..||-..+.+.+-.+-.+...-+||||+|..|.+.+.|.
T Consensus 202 ln~~np~V~~~~~~~~~~w~~~~giDGfR~D~a~~~~~~~~ 242 (394)
T d2d3na2 202 IDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSFT 242 (394)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHHH
T ss_pred cccCCHHHHHHHHHhhhhhhcccCcceEEecccccCChHHH
Confidence 35566766666665554434456899999999999877653
No 7
>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]}
Probab=27.22 E-value=3.5 Score=34.34 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=29.0
Q ss_pred CCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 29 MNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 29 ~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
++..||-..+.+.+..+..+...-+||||+|..|.++..|
T Consensus 201 ln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~~~~f 240 (393)
T d1e43a2 201 VDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSF 240 (393)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHH
T ss_pred cccCChhhhHHHHHHHHhhhhhcCcceEEeeccccCCHHH
Confidence 4566777777776666543445689999999999887654
No 8
>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=23.15 E-value=5.5 Score=32.55 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=32.5
Q ss_pred hccCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 26 VDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 26 ~~~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
...++..||-.-|.|.+-++..+...-+||||+|..|.+.+.|
T Consensus 172 ~~dln~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~~~~~ 214 (382)
T d1j0ha3 172 MPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEF 214 (382)
T ss_dssp SBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHH
T ss_pred CcccccChHHHHHHHHHHHHhHhhhccccEEEecchhhcchhh
Confidence 3457788887777777777654566789999999999876533
No 9
>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=23.08 E-value=7.1 Score=32.02 Aligned_cols=40 Identities=13% Similarity=-0.042 Sum_probs=28.1
Q ss_pred cCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCe
Q 026413 28 YMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKF 68 (239)
Q Consensus 28 ~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~F 68 (239)
.++..||-.-+.|..-++- +...-+||||+|..|.+...|
T Consensus 155 Dln~~np~V~~~l~~~~~~-w~e~gvDGfR~Daa~~i~~~~ 194 (378)
T d1jaea2 155 DLNQGSDYVRGVLIDYMNH-MIDLGVAGFRVDAAKHMSPGD 194 (378)
T ss_dssp BBCTTSHHHHHHHHHHHHH-HHHTTCCEEEETTGGGSCHHH
T ss_pred ccccCCHHHHHHHHHHHHH-HHHhCCCceeeeeecccCHHH
Confidence 3566777666666655553 335789999999999886544
No 10
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=19.80 E-value=1.3e+02 Score=20.61 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.3
Q ss_pred eEEeEEEeeCCceeeeeeEEEec
Q 026413 171 FGASYIQNVSPHLSLGGEVFWAG 193 (239)
Q Consensus 171 ~~~syLQSVTprLsLG~E~~y~~ 193 (239)
+++..-..||++|+|.+|.-|..
T Consensus 110 ~g~G~~y~lt~n~~~~~eyry~~ 132 (155)
T d1p4ta_ 110 VLTGVSYAVTPNVDLDAGYRYNY 132 (155)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEecCCEEEEEEEEEEE
Confidence 45677789999999999998864
Done!