Query 026414
Match_columns 239
No_of_seqs 110 out of 1667
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:43:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 1.1E-49 2.3E-54 343.5 21.7 208 7-238 1-209 (339)
2 COG1062 AdhC Zn-dependent alco 100.0 2.1E-47 4.5E-52 324.2 20.6 229 8-238 1-229 (366)
3 KOG0022 Alcohol dehydrogenase, 100.0 3.4E-47 7.5E-52 318.6 21.5 234 5-238 3-236 (375)
4 KOG0023 Alcohol dehydrogenase, 100.0 8.1E-43 1.8E-47 293.4 19.8 218 1-235 1-221 (360)
5 KOG0024 Sorbitol dehydrogenase 100.0 5.4E-42 1.2E-46 289.0 17.7 207 8-238 3-213 (354)
6 TIGR02818 adh_III_F_hyde S-(hy 100.0 3.3E-39 7.1E-44 286.8 24.1 227 10-237 2-228 (368)
7 cd08301 alcohol_DH_plants Plan 100.0 1.1E-38 2.4E-43 283.2 24.3 230 8-237 1-230 (369)
8 PLN02740 Alcohol dehydrogenase 100.0 1.4E-38 3E-43 284.0 24.1 233 5-237 6-241 (381)
9 cd08300 alcohol_DH_class_III c 100.0 1.8E-38 3.9E-43 281.9 24.6 229 8-237 1-229 (368)
10 cd08281 liver_ADH_like1 Zinc-d 100.0 1.2E-37 2.6E-42 277.0 22.9 226 10-237 1-234 (371)
11 cd08277 liver_alcohol_DH_like 100.0 9.7E-37 2.1E-41 270.6 24.0 227 8-237 1-227 (365)
12 PLN02827 Alcohol dehydrogenase 100.0 1.5E-36 3.3E-41 270.6 24.1 226 8-237 11-236 (378)
13 cd08239 THR_DH_like L-threonin 100.0 1.3E-36 2.8E-41 266.6 21.9 205 10-237 1-206 (339)
14 TIGR03451 mycoS_dep_FDH mycoth 100.0 1.8E-36 4E-41 268.1 22.5 219 9-237 1-219 (358)
15 TIGR02819 fdhA_non_GSH formald 100.0 2.7E-36 5.9E-41 270.2 22.0 212 9-238 2-229 (393)
16 PLN02586 probable cinnamyl alc 100.0 6.6E-36 1.4E-40 265.0 22.4 209 5-233 8-221 (360)
17 COG1063 Tdh Threonine dehydrog 100.0 4.9E-36 1.1E-40 264.7 20.9 209 10-238 1-212 (350)
18 PRK09880 L-idonate 5-dehydroge 100.0 1.7E-35 3.6E-40 260.5 20.9 207 8-237 3-212 (343)
19 cd08299 alcohol_DH_class_I_II_ 100.0 6E-35 1.3E-39 259.9 23.8 229 7-237 5-233 (373)
20 TIGR02822 adh_fam_2 zinc-bindi 100.0 9E-35 2E-39 254.7 21.7 201 13-237 2-207 (329)
21 cd08230 glucose_DH Glucose deh 100.0 1.7E-34 3.8E-39 255.1 21.0 205 10-237 1-217 (355)
22 PLN02514 cinnamyl-alcohol dehy 100.0 4.2E-34 9.2E-39 253.1 22.7 215 5-235 5-220 (357)
23 cd05279 Zn_ADH1 Liver alcohol 100.0 1.2E-33 2.7E-38 250.7 23.7 226 10-237 1-226 (365)
24 PLN02178 cinnamyl-alcohol dehy 100.0 1E-33 2.2E-38 252.2 21.9 205 12-236 9-220 (375)
25 COG0604 Qor NADPH:quinone redu 100.0 9.5E-34 2.1E-38 247.6 19.0 181 10-237 1-185 (326)
26 TIGR03201 dearomat_had 6-hydro 100.0 2.9E-33 6.2E-38 246.9 20.6 200 13-237 2-208 (349)
27 cd08237 ribitol-5-phosphate_DH 100.0 4.8E-33 1E-37 244.9 20.6 199 9-237 2-207 (341)
28 PRK10309 galactitol-1-phosphat 100.0 1.4E-32 3E-37 242.0 21.4 202 10-237 1-203 (347)
29 cd08231 MDR_TM0436_like Hypoth 100.0 4.7E-32 1E-36 239.8 21.8 212 11-237 2-220 (361)
30 PRK10083 putative oxidoreducta 100.0 6.8E-32 1.5E-36 236.5 21.9 203 10-237 1-204 (339)
31 cd08278 benzyl_alcohol_DH Benz 100.0 8E-32 1.7E-36 239.1 22.3 227 8-237 1-229 (365)
32 cd08296 CAD_like Cinnamyl alco 100.0 1.2E-31 2.7E-36 234.8 22.1 204 10-237 1-205 (333)
33 cd08285 NADP_ADH NADP(H)-depen 100.0 1.4E-31 3.1E-36 235.9 22.4 207 10-237 1-209 (351)
34 cd08233 butanediol_DH_like (2R 100.0 1.5E-31 3.1E-36 235.8 21.6 204 10-237 1-215 (351)
35 cd08283 FDH_like_1 Glutathione 100.0 2.6E-31 5.6E-36 237.5 22.7 224 10-238 1-228 (386)
36 PRK13771 putative alcohol dehy 100.0 1.4E-30 3E-35 227.6 21.9 203 10-236 1-204 (334)
37 cd08256 Zn_ADH2 Alcohol dehydr 100.0 1.3E-30 2.9E-35 229.6 21.7 205 10-237 1-217 (350)
38 cd08279 Zn_ADH_class_III Class 100.0 2.4E-30 5.2E-35 229.3 23.0 224 10-236 1-224 (363)
39 cd05278 FDH_like Formaldehyde 100.0 2.5E-30 5.4E-35 227.0 22.6 207 10-237 1-210 (347)
40 cd08246 crotonyl_coA_red croto 100.0 1.6E-30 3.6E-35 232.7 20.8 210 6-237 9-236 (393)
41 cd05284 arabinose_DH_like D-ar 100.0 2.5E-30 5.4E-35 226.5 21.3 206 10-237 1-210 (340)
42 cd08259 Zn_ADH5 Alcohol dehydr 100.0 6.1E-30 1.3E-34 222.5 22.5 203 10-236 1-204 (332)
43 cd08282 PFDH_like Pseudomonas 100.0 6E-30 1.3E-34 227.8 22.8 213 10-237 1-219 (375)
44 cd08286 FDH_like_ADH2 formalde 100.0 5.5E-30 1.2E-34 225.0 22.2 206 10-237 1-209 (345)
45 KOG1197 Predicted quinone oxid 100.0 1.1E-30 2.3E-35 213.8 15.9 183 5-237 4-189 (336)
46 cd08240 6_hydroxyhexanoate_dh_ 100.0 7.3E-30 1.6E-34 224.8 21.3 206 10-237 1-218 (350)
47 cd08260 Zn_ADH6 Alcohol dehydr 100.0 1.9E-29 4.1E-34 221.6 23.0 205 10-237 1-207 (345)
48 cd08284 FDH_like_2 Glutathione 100.0 1.3E-29 2.9E-34 222.2 21.8 207 10-237 1-210 (344)
49 cd08238 sorbose_phosphate_red 100.0 8.7E-30 1.9E-34 229.5 20.5 197 8-238 1-222 (410)
50 PRK09422 ethanol-active dehydr 100.0 1.8E-29 3.9E-34 220.9 21.5 203 10-237 1-205 (338)
51 TIGR01202 bchC 2-desacetyl-2-h 100.0 1.1E-29 2.4E-34 220.7 19.0 183 9-237 1-187 (308)
52 TIGR01751 crot-CoA-red crotony 100.0 2.5E-29 5.4E-34 225.6 21.4 210 6-237 4-232 (398)
53 cd08263 Zn_ADH10 Alcohol dehyd 100.0 3.3E-29 7.1E-34 222.3 21.5 225 10-236 1-229 (367)
54 PLN02702 L-idonate 5-dehydroge 100.0 4.8E-29 1E-33 221.0 22.4 206 8-237 16-224 (364)
55 cd08298 CAD2 Cinnamyl alcohol 100.0 7.6E-29 1.7E-33 216.2 21.8 204 10-237 1-209 (329)
56 cd05283 CAD1 Cinnamyl alcohol 100.0 6.2E-29 1.3E-33 218.0 20.8 210 11-237 1-211 (337)
57 KOG0025 Zn2+-binding dehydroge 100.0 2.9E-29 6.2E-34 208.6 16.9 184 4-236 14-202 (354)
58 cd08242 MDR_like Medium chain 100.0 1.3E-28 2.9E-33 213.9 21.3 197 10-237 1-197 (319)
59 cd08265 Zn_ADH3 Alcohol dehydr 100.0 1.4E-28 3.1E-33 219.7 21.8 204 9-237 28-246 (384)
60 cd08264 Zn_ADH_like2 Alcohol d 100.0 1.5E-28 3.3E-33 213.9 21.3 193 10-227 1-195 (325)
61 cd08254 hydroxyacyl_CoA_DH 6-h 100.0 2.1E-28 4.5E-33 213.6 21.7 204 10-236 1-206 (338)
62 cd08261 Zn_ADH7 Alcohol dehydr 100.0 3E-28 6.6E-33 213.3 21.8 200 10-236 1-200 (337)
63 cd08262 Zn_ADH8 Alcohol dehydr 100.0 2.3E-28 5E-33 214.3 21.0 192 10-237 1-204 (341)
64 cd08266 Zn_ADH_like1 Alcohol d 100.0 2.7E-28 5.8E-33 212.2 21.2 204 10-236 1-208 (342)
65 cd08245 CAD Cinnamyl alcohol d 100.0 3.1E-28 6.8E-33 212.4 21.0 203 11-237 1-204 (330)
66 PRK05396 tdh L-threonine 3-deh 100.0 3.5E-28 7.6E-33 213.4 21.2 203 10-237 1-206 (341)
67 cd08287 FDH_like_ADH3 formalde 100.0 6.6E-28 1.4E-32 211.7 21.5 203 10-237 1-211 (345)
68 cd08235 iditol_2_DH_like L-idi 100.0 7.5E-28 1.6E-32 211.1 21.8 202 10-236 1-207 (343)
69 cd08234 threonine_DH_like L-th 100.0 1.7E-27 3.6E-32 208.0 21.2 201 10-236 1-201 (334)
70 cd08236 sugar_DH NAD(P)-depend 100.0 1.6E-27 3.4E-32 209.1 21.0 201 10-236 1-201 (343)
71 cd05285 sorbitol_DH Sorbitol d 100.0 1.8E-27 3.8E-32 209.2 20.8 201 12-236 1-204 (343)
72 cd08232 idonate-5-DH L-idonate 100.0 3.2E-27 7E-32 206.9 20.8 203 14-236 2-207 (339)
73 cd08297 CAD3 Cinnamyl alcohol 100.0 5.7E-27 1.2E-31 205.5 21.9 204 10-237 1-208 (341)
74 cd08291 ETR_like_1 2-enoyl thi 100.0 1.9E-27 4.2E-32 207.4 18.7 177 10-237 1-186 (324)
75 cd08258 Zn_ADH4 Alcohol dehydr 100.0 8.3E-27 1.8E-31 202.2 22.1 203 10-236 1-207 (306)
76 cd08292 ETR_like_2 2-enoyl thi 100.0 7E-27 1.5E-31 203.0 19.5 176 10-236 1-181 (324)
77 cd05281 TDH Threonine dehydrog 100.0 1.3E-26 2.8E-31 203.6 20.8 202 10-236 1-205 (341)
78 TIGR03366 HpnZ_proposed putati 100.0 1.7E-27 3.7E-32 204.2 14.7 156 66-237 1-163 (280)
79 cd08274 MDR9 Medium chain dehy 99.9 1.3E-26 2.7E-31 203.7 19.8 194 10-236 1-218 (350)
80 TIGR02817 adh_fam_1 zinc-bindi 99.9 8.6E-27 1.9E-31 203.7 18.1 180 11-237 1-192 (336)
81 cd08293 PTGR2 Prostaglandin re 99.9 6.5E-26 1.4E-30 199.1 20.1 165 22-237 23-198 (345)
82 TIGR00692 tdh L-threonine 3-de 99.9 7.1E-26 1.5E-30 198.8 19.9 198 15-237 4-204 (340)
83 cd08290 ETR 2-enoyl thioester 99.9 6.3E-26 1.4E-30 198.7 18.3 177 10-235 1-191 (341)
84 PRK10754 quinone oxidoreductas 99.9 1.1E-25 2.5E-30 196.0 19.1 179 9-236 1-182 (327)
85 cd08276 MDR7 Medium chain dehy 99.9 8.1E-25 1.8E-29 190.4 21.4 199 10-237 1-202 (336)
86 cd08295 double_bond_reductase_ 99.9 4.8E-25 1E-29 193.4 18.6 176 9-237 7-194 (338)
87 cd08248 RTN4I1 Human Reticulon 99.9 5.2E-25 1.1E-29 193.4 18.6 179 10-236 1-203 (350)
88 cd05280 MDR_yhdh_yhfp Yhdh and 99.9 8.5E-25 1.8E-29 189.8 19.7 182 10-237 1-189 (325)
89 PTZ00354 alcohol dehydrogenase 99.9 1.1E-24 2.3E-29 189.7 19.9 178 9-236 1-182 (334)
90 cd08294 leukotriene_B4_DH_like 99.9 1.1E-24 2.5E-29 189.6 19.8 170 9-237 2-186 (329)
91 cd05188 MDR Medium chain reduc 99.9 6.4E-25 1.4E-29 185.0 17.5 175 36-237 1-176 (271)
92 cd08250 Mgc45594_like Mgc45594 99.9 1.6E-24 3.5E-29 188.8 20.0 175 9-236 1-181 (329)
93 PLN03154 putative allyl alcoho 99.9 3.2E-24 6.8E-29 189.4 20.8 179 5-236 4-200 (348)
94 cd08252 AL_MDR Arginate lyase 99.9 2.1E-24 4.5E-29 188.5 19.4 181 10-237 1-193 (336)
95 cd08243 quinone_oxidoreductase 99.9 2.9E-24 6.2E-29 185.6 19.9 181 10-236 1-184 (320)
96 TIGR02825 B4_12hDH leukotriene 99.9 2.6E-24 5.6E-29 187.8 19.4 157 22-237 19-181 (325)
97 cd08244 MDR_enoyl_red Possible 99.9 4.3E-24 9.3E-29 185.3 20.2 178 10-236 1-184 (324)
98 cd08249 enoyl_reductase_like e 99.9 1.1E-24 2.4E-29 191.3 16.7 183 10-236 1-195 (339)
99 cd08289 MDR_yhfp_like Yhfp put 99.9 3.3E-24 7.1E-29 186.5 19.2 182 10-237 1-189 (326)
100 cd08270 MDR4 Medium chain dehy 99.9 4.7E-24 1E-28 183.7 19.4 173 10-237 1-175 (305)
101 cd08288 MDR_yhdh Yhdh putative 99.9 9.8E-24 2.1E-28 183.3 20.0 181 10-236 1-188 (324)
102 TIGR02823 oxido_YhdH putative 99.9 1.3E-23 2.7E-28 182.7 20.6 181 11-237 1-188 (323)
103 cd08273 MDR8 Medium chain dehy 99.9 1.6E-23 3.6E-28 182.3 19.9 175 11-236 2-180 (331)
104 cd08253 zeta_crystallin Zeta-c 99.9 2.6E-23 5.6E-28 179.2 19.2 182 10-236 1-186 (325)
105 cd08247 AST1_like AST1 is a cy 99.9 2.8E-23 6.1E-28 183.0 19.6 180 11-235 2-193 (352)
106 cd05276 p53_inducible_oxidored 99.9 3E-23 6.5E-28 178.5 19.0 177 10-236 1-181 (323)
107 cd08271 MDR5 Medium chain dehy 99.9 4.3E-23 9.2E-28 178.6 20.0 178 10-235 1-181 (325)
108 cd08272 MDR6 Medium chain dehy 99.9 7.1E-23 1.5E-27 177.0 18.8 181 10-236 1-185 (326)
109 cd08269 Zn_ADH9 Alcohol dehydr 99.9 1.2E-22 2.6E-27 175.3 18.1 166 17-236 3-171 (312)
110 cd05282 ETR_like 2-enoyl thioe 99.9 1.2E-22 2.7E-27 176.1 17.6 166 22-237 14-181 (323)
111 cd05286 QOR2 Quinone oxidoredu 99.9 3.4E-22 7.4E-27 171.7 19.7 176 11-237 1-179 (320)
112 cd08268 MDR2 Medium chain dehy 99.9 5.9E-22 1.3E-26 171.2 19.6 182 10-236 1-186 (328)
113 PF08240 ADH_N: Alcohol dehydr 99.9 3.4E-23 7.5E-28 153.3 9.9 108 34-163 1-109 (109)
114 cd05289 MDR_like_2 alcohol deh 99.9 5.1E-22 1.1E-26 170.2 17.9 179 10-236 1-185 (309)
115 TIGR02824 quinone_pig3 putativ 99.9 1.1E-21 2.3E-26 169.4 19.6 177 10-236 1-181 (325)
116 cd08267 MDR1 Medium chain dehy 99.9 1.8E-21 3.9E-26 168.0 17.1 166 23-236 15-184 (319)
117 cd08251 polyketide_synthase po 99.9 2.3E-21 5E-26 165.8 17.3 159 29-236 2-162 (303)
118 cd05288 PGDH Prostaglandin deh 99.9 6.1E-21 1.3E-25 166.1 19.2 172 11-237 3-188 (329)
119 KOG1198 Zinc-binding oxidoredu 99.9 3.7E-21 8E-26 169.0 16.4 166 22-237 20-200 (347)
120 cd08241 QOR1 Quinone oxidoredu 99.9 1.3E-20 2.8E-25 162.2 19.3 176 10-236 1-181 (323)
121 cd08275 MDR3 Medium chain dehy 99.9 5.7E-20 1.2E-24 159.8 19.4 158 11-217 1-162 (337)
122 cd05195 enoyl_red enoyl reduct 99.9 1.9E-20 4.2E-25 158.5 16.1 150 35-237 1-151 (293)
123 COG2130 Putative NADP-dependen 99.8 1.4E-19 3E-24 152.2 15.7 163 21-237 26-193 (340)
124 smart00829 PKS_ER Enoylreducta 99.8 1.8E-19 3.8E-24 152.6 15.0 145 39-237 2-147 (288)
125 cd08255 2-desacetyl-2-hydroxye 99.7 3.9E-17 8.5E-22 139.0 12.8 127 56-237 14-140 (277)
126 KOG1202 Animal-type fatty acid 99.6 9.5E-15 2.1E-19 139.7 10.6 158 22-239 1429-1597(2376)
127 KOG1196 Predicted NAD-dependen 99.6 1.1E-13 2.4E-18 116.5 15.9 160 24-239 26-198 (343)
128 PRK09424 pntA NAD(P) transhydr 97.5 0.00019 4.1E-09 66.5 6.7 45 192-237 162-206 (509)
129 cd00401 AdoHcyase S-adenosyl-L 97.2 0.0013 2.8E-08 59.5 7.3 54 183-237 189-243 (413)
130 TIGR01035 hemA glutamyl-tRNA r 97.0 1.5E-05 3.2E-10 72.4 -6.8 128 65-233 88-218 (417)
131 PF01488 Shikimate_DH: Shikima 97.0 0.002 4.3E-08 49.2 5.8 45 193-237 10-54 (135)
132 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.00071 1.5E-08 59.0 3.6 77 158-235 139-218 (311)
133 PRK00517 prmA ribosomal protei 96.9 0.0038 8.1E-08 52.7 7.5 82 149-237 79-160 (250)
134 TIGR00561 pntA NAD(P) transhyd 96.5 0.0057 1.2E-07 56.7 6.3 44 193-237 162-205 (511)
135 PRK05476 S-adenosyl-L-homocyst 96.3 0.014 3.1E-07 53.0 7.1 53 182-235 198-251 (425)
136 PRK00045 hemA glutamyl-tRNA re 96.1 0.0058 1.2E-07 55.7 4.0 56 178-233 162-220 (423)
137 TIGR00936 ahcY adenosylhomocys 96.1 0.02 4.3E-07 51.8 7.1 52 183-235 182-234 (406)
138 TIGR00518 alaDH alanine dehydr 95.9 0.018 3.9E-07 51.5 6.1 42 194-236 166-207 (370)
139 COG0169 AroE Shikimate 5-dehyd 95.8 0.023 4.9E-07 48.9 6.1 46 193-238 124-169 (283)
140 PF13823 ADH_N_assoc: Alcohol 95.7 0.01 2.2E-07 30.9 2.1 22 10-32 1-22 (23)
141 PRK12549 shikimate 5-dehydroge 95.7 0.039 8.4E-07 47.6 6.9 44 193-236 125-168 (284)
142 PF01262 AlaDh_PNT_C: Alanine 95.7 0.035 7.5E-07 43.9 6.2 41 195-236 20-60 (168)
143 PRK12550 shikimate 5-dehydroge 95.6 0.047 1E-06 46.8 7.3 46 192-237 119-164 (272)
144 PRK08306 dipicolinate synthase 95.6 0.05 1.1E-06 47.2 7.3 41 194-235 151-191 (296)
145 PLN02494 adenosylhomocysteinas 95.6 0.044 9.5E-07 50.3 7.1 52 183-235 241-293 (477)
146 TIGR01809 Shik-DH-AROM shikima 95.5 0.035 7.6E-07 47.8 6.0 43 194-236 124-166 (282)
147 PRK00258 aroE shikimate 5-dehy 95.4 0.043 9.2E-07 47.1 6.2 45 193-237 121-165 (278)
148 PRK11873 arsM arsenite S-adeno 95.3 0.046 1E-06 46.5 6.3 48 189-237 72-120 (272)
149 cd01075 NAD_bind_Leu_Phe_Val_D 95.3 0.056 1.2E-06 44.1 6.4 44 193-237 26-69 (200)
150 PRK14027 quinate/shikimate deh 95.2 0.065 1.4E-06 46.2 6.9 44 193-236 125-168 (283)
151 PRK12771 putative glutamate sy 94.8 0.06 1.3E-06 50.8 6.0 37 191-228 133-169 (564)
152 PRK08324 short chain dehydroge 94.8 0.064 1.4E-06 51.9 6.1 76 148-235 386-462 (681)
153 PF02826 2-Hacid_dh_C: D-isome 94.5 0.13 2.8E-06 41.1 6.3 41 192-233 33-73 (178)
154 PRK12548 shikimate 5-dehydroge 94.5 0.14 3.1E-06 44.2 7.0 37 193-229 124-160 (289)
155 PLN03209 translocon at the inn 94.3 0.12 2.6E-06 48.7 6.6 46 188-234 73-119 (576)
156 TIGR02853 spore_dpaA dipicolin 94.3 0.12 2.7E-06 44.6 6.1 41 194-235 150-190 (287)
157 PLN02780 ketoreductase/ oxidor 94.0 0.13 2.8E-06 45.0 5.9 42 193-235 51-93 (320)
158 PRK07831 short chain dehydroge 93.9 0.16 3.5E-06 42.5 6.1 44 191-235 13-58 (262)
159 cd01065 NAD_bind_Shikimate_DH 93.8 0.32 6.9E-06 37.3 7.1 43 193-235 17-59 (155)
160 PRK13940 glutamyl-tRNA reducta 93.7 0.24 5.2E-06 45.0 7.1 46 192-237 178-223 (414)
161 PRK05866 short chain dehydroge 93.7 0.19 4E-06 43.3 6.2 41 194-235 39-80 (293)
162 PRK12749 quinate/shikimate deh 93.6 0.28 6.1E-06 42.3 7.2 37 194-230 123-159 (288)
163 PTZ00075 Adenosylhomocysteinas 93.5 0.31 6.7E-06 44.9 7.5 40 192-232 251-290 (476)
164 cd01080 NAD_bind_m-THF_DH_Cycl 93.4 0.34 7.5E-06 38.4 6.8 59 173-232 22-81 (168)
165 TIGR00406 prmA ribosomal prote 93.3 0.41 9E-06 41.2 7.8 44 192-237 157-200 (288)
166 PRK06196 oxidoreductase; Provi 93.2 0.23 5.1E-06 43.0 6.1 41 194-235 25-66 (315)
167 TIGR00507 aroE shikimate 5-deh 93.1 0.34 7.3E-06 41.3 6.8 43 192-235 114-156 (270)
168 PRK04148 hypothetical protein; 93.0 0.27 5.9E-06 37.5 5.4 43 193-237 15-57 (134)
169 cd05311 NAD_bind_2_malic_enz N 92.7 0.29 6.3E-06 40.7 5.7 36 193-228 23-60 (226)
170 PRK06197 short chain dehydroge 92.7 0.27 5.9E-06 42.3 5.8 39 194-233 15-54 (306)
171 cd01078 NAD_bind_H4MPT_DH NADP 92.2 0.43 9.3E-06 38.4 6.0 41 194-235 27-68 (194)
172 PLN02520 bifunctional 3-dehydr 92.0 0.38 8.2E-06 45.2 6.1 42 194-236 378-419 (529)
173 PRK00377 cbiT cobalt-precorrin 91.9 0.46 1E-05 38.4 5.9 49 188-237 34-83 (198)
174 PLN02253 xanthoxin dehydrogena 91.8 0.49 1.1E-05 40.0 6.2 39 194-233 17-56 (280)
175 PF00070 Pyr_redox: Pyridine n 91.6 0.54 1.2E-05 32.0 5.2 34 197-231 1-34 (80)
176 PLN00203 glutamyl-tRNA reducta 91.6 0.38 8.3E-06 45.0 5.7 43 194-236 265-307 (519)
177 PRK11705 cyclopropane fatty ac 91.5 0.39 8.5E-06 43.2 5.5 55 181-237 154-208 (383)
178 PF00670 AdoHcyase_NAD: S-aden 91.3 0.66 1.4E-05 36.5 5.8 42 191-233 19-60 (162)
179 PF13241 NAD_binding_7: Putati 91.2 0.14 3E-06 37.1 1.9 35 194-229 6-40 (103)
180 PF03807 F420_oxidored: NADP o 90.9 0.85 1.8E-05 31.9 5.8 41 197-238 1-45 (96)
181 TIGR02964 xanthine_xdhC xanthi 90.8 0.54 1.2E-05 39.6 5.4 38 192-230 97-134 (246)
182 PF02353 CMAS: Mycolic acid cy 90.7 0.5 1.1E-05 40.5 5.1 50 186-237 54-103 (273)
183 PF02254 TrkA_N: TrkA-N domain 90.6 0.89 1.9E-05 33.0 5.8 39 198-237 1-39 (116)
184 PRK06484 short chain dehydroge 90.5 0.67 1.4E-05 43.0 6.2 43 193-236 267-310 (520)
185 cd05211 NAD_bind_Glu_Leu_Phe_V 90.3 1.3 2.7E-05 36.7 7.0 37 193-229 21-57 (217)
186 PRK06720 hypothetical protein; 90.0 1.1 2.3E-05 35.5 6.2 39 194-233 15-54 (169)
187 PRK07424 bifunctional sterol d 90.0 0.79 1.7E-05 41.6 6.0 39 194-233 177-216 (406)
188 PF12847 Methyltransf_18: Meth 89.9 0.91 2E-05 32.5 5.3 42 194-237 1-43 (112)
189 PLN00141 Tic62-NAD(P)-related 89.8 0.87 1.9E-05 38.0 5.8 41 191-232 13-54 (251)
190 TIGR02469 CbiT precorrin-6Y C5 89.8 1.2 2.6E-05 32.3 5.9 49 188-237 13-61 (124)
191 PRK14982 acyl-ACP reductase; P 89.7 0.88 1.9E-05 40.3 5.9 44 193-236 153-198 (340)
192 TIGR02356 adenyl_thiF thiazole 89.4 1.1 2.3E-05 36.6 5.8 35 194-228 20-54 (202)
193 COG0686 Ald Alanine dehydrogen 89.2 0.5 1.1E-05 41.1 3.8 44 195-239 168-211 (371)
194 KOG1208 Dehydrogenases with di 89.1 0.98 2.1E-05 39.5 5.8 44 193-237 33-77 (314)
195 PTZ00079 NADP-specific glutama 89.1 1.5 3.2E-05 40.3 7.0 35 193-228 235-270 (454)
196 PRK08328 hypothetical protein; 88.9 0.96 2.1E-05 37.7 5.4 36 194-229 26-61 (231)
197 COG0373 HemA Glutamyl-tRNA red 88.8 1.4 3.1E-05 40.0 6.7 45 193-237 176-220 (414)
198 PRK12769 putative oxidoreducta 88.8 0.81 1.8E-05 44.1 5.5 36 193-229 325-360 (654)
199 PLN02686 cinnamoyl-CoA reducta 88.7 1.2 2.5E-05 39.7 6.1 38 193-231 51-89 (367)
200 PRK09310 aroDE bifunctional 3- 88.7 1.6 3.4E-05 40.6 7.1 41 194-235 331-371 (477)
201 PLN02928 oxidoreductase family 88.4 0.99 2.2E-05 40.1 5.4 35 193-228 157-191 (347)
202 PF13450 NAD_binding_8: NAD(P) 88.1 1.1 2.4E-05 29.6 4.3 30 200-230 1-30 (68)
203 KOG1014 17 beta-hydroxysteroid 88.1 1.2 2.6E-05 38.6 5.5 42 193-236 47-90 (312)
204 TIGR02355 moeB molybdopterin s 87.6 1 2.2E-05 37.8 4.8 36 194-229 23-58 (240)
205 TIGR01318 gltD_gamma_fam gluta 87.5 1.2 2.6E-05 41.1 5.5 36 193-229 139-174 (467)
206 TIGR02632 RhaD_aldol-ADH rhamn 87.2 1.5 3.2E-05 42.6 6.2 40 194-234 413-453 (676)
207 COG1086 Predicted nucleoside-d 87.2 1.3 2.7E-05 41.7 5.4 44 193-236 248-292 (588)
208 PF00899 ThiF: ThiF family; I 87.2 1.6 3.4E-05 32.9 5.2 35 195-229 2-36 (135)
209 PRK10669 putative cation:proto 87.0 1.2 2.6E-05 42.0 5.4 41 196-237 418-458 (558)
210 cd05191 NAD_bind_amino_acid_DH 86.8 2.3 5E-05 29.4 5.5 35 193-227 21-55 (86)
211 PRK07201 short chain dehydroge 86.7 1.6 3.6E-05 41.7 6.2 40 195-235 371-411 (657)
212 PRK06719 precorrin-2 dehydroge 86.6 1.9 4.1E-05 33.7 5.5 32 194-226 12-43 (157)
213 PRK05855 short chain dehydroge 86.5 1.7 3.8E-05 40.4 6.2 41 194-235 314-355 (582)
214 PRK14967 putative methyltransf 86.5 2.5 5.5E-05 34.7 6.5 48 188-237 30-77 (223)
215 COG2264 PrmA Ribosomal protein 86.5 3.9 8.5E-05 35.5 7.8 74 157-237 129-203 (300)
216 COG0334 GdhA Glutamate dehydro 86.5 2.6 5.6E-05 38.1 6.8 37 193-230 205-241 (411)
217 PRK08410 2-hydroxyacid dehydro 86.2 1.6 3.4E-05 38.1 5.3 35 194-229 144-178 (311)
218 PRK13243 glyoxylate reductase; 86.2 1.6 3.6E-05 38.4 5.5 36 194-230 149-184 (333)
219 PRK07985 oxidoreductase; Provi 86.0 1.7 3.8E-05 37.2 5.5 34 194-228 48-82 (294)
220 PRK12809 putative oxidoreducta 85.9 1.5 3.2E-05 42.2 5.4 35 194-229 309-343 (639)
221 KOG1201 Hydroxysteroid 17-beta 85.9 1.9 4.2E-05 37.2 5.5 39 194-233 37-76 (300)
222 PRK05690 molybdopterin biosynt 85.7 1.9 4.2E-05 36.2 5.4 36 194-229 31-66 (245)
223 PRK06128 oxidoreductase; Provi 85.7 1.9 4.1E-05 37.0 5.6 34 194-228 54-88 (300)
224 PRK08261 fabG 3-ketoacyl-(acyl 85.6 2.1 4.5E-05 39.1 6.0 35 193-228 208-243 (450)
225 PRK08762 molybdopterin biosynt 85.6 1.8 4E-05 38.7 5.6 35 194-228 134-168 (376)
226 PLN02657 3,8-divinyl protochlo 85.5 1.9 4.1E-05 38.8 5.6 42 189-231 54-96 (390)
227 PRK06701 short chain dehydroge 85.4 2.4 5.2E-05 36.2 6.1 37 192-229 43-80 (290)
228 PRK07574 formate dehydrogenase 85.3 2.1 4.6E-05 38.5 5.8 35 194-229 191-225 (385)
229 KOG1210 Predicted 3-ketosphing 85.3 2.2 4.7E-05 37.2 5.5 47 190-237 28-75 (331)
230 PRK06436 glycerate dehydrogena 85.2 2 4.4E-05 37.4 5.4 35 194-229 121-155 (303)
231 COG0111 SerA Phosphoglycerate 85.0 2 4.3E-05 37.8 5.4 33 194-227 141-173 (324)
232 TIGR02354 thiF_fam2 thiamine b 85.0 2.1 4.5E-05 34.9 5.2 35 194-228 20-54 (200)
233 PRK09496 trkA potassium transp 85.0 2.6 5.6E-05 38.4 6.4 44 193-237 229-272 (453)
234 PRK06932 glycerate dehydrogena 84.9 1.8 3.9E-05 37.8 5.1 35 194-229 146-180 (314)
235 PRK12831 putative oxidoreducta 84.8 2 4.4E-05 39.6 5.6 37 192-229 137-173 (464)
236 PRK03562 glutathione-regulated 84.8 1.9 4.1E-05 41.4 5.5 42 195-237 400-441 (621)
237 PRK12480 D-lactate dehydrogena 84.6 2.4 5.2E-05 37.3 5.8 37 194-231 145-181 (330)
238 PRK15469 ghrA bifunctional gly 84.6 2.1 4.6E-05 37.4 5.4 36 194-230 135-170 (312)
239 PRK06487 glycerate dehydrogena 84.5 2 4.4E-05 37.6 5.2 34 194-228 147-180 (317)
240 cd01076 NAD_bind_1_Glu_DH NAD( 84.4 3.4 7.5E-05 34.3 6.3 34 193-227 29-63 (227)
241 PRK12475 thiamine/molybdopteri 84.2 2.2 4.7E-05 37.8 5.3 36 194-229 23-58 (338)
242 cd00757 ThiF_MoeB_HesA_family 84.2 2.4 5.1E-05 35.2 5.3 36 194-229 20-55 (228)
243 PRK00676 hemA glutamyl-tRNA re 84.1 3.3 7.2E-05 36.6 6.3 39 193-231 172-210 (338)
244 PRK12814 putative NADPH-depend 84.0 2 4.4E-05 41.4 5.4 37 193-230 191-227 (652)
245 PLN03139 formate dehydrogenase 84.0 2.5 5.3E-05 38.2 5.6 35 194-229 198-232 (386)
246 PRK13943 protein-L-isoaspartat 84.0 3.5 7.5E-05 36.3 6.4 51 186-237 72-123 (322)
247 PF06325 PrmA: Ribosomal prote 84.0 2.1 4.5E-05 37.2 4.9 44 192-237 159-202 (295)
248 PRK12810 gltD glutamate syntha 83.9 2.1 4.7E-05 39.4 5.4 36 193-229 141-176 (471)
249 COG2230 Cfa Cyclopropane fatty 83.9 4.7 0.0001 34.7 7.0 54 182-237 60-113 (283)
250 PRK07688 thiamine/molybdopteri 83.9 2.4 5.2E-05 37.5 5.5 36 194-229 23-58 (339)
251 PRK14031 glutamate dehydrogena 83.9 2.4 5.2E-05 38.9 5.5 34 193-227 226-259 (444)
252 PRK00811 spermidine synthase; 83.8 2.1 4.5E-05 36.9 4.9 45 193-238 75-119 (283)
253 PRK06141 ornithine cyclodeamin 83.5 3.2 7E-05 36.2 6.1 45 192-236 122-167 (314)
254 PRK07340 ornithine cyclodeamin 83.4 3.4 7.3E-05 35.9 6.1 44 193-236 123-167 (304)
255 cd05313 NAD_bind_2_Glu_DH NAD( 83.4 3.9 8.4E-05 34.7 6.2 34 193-227 36-69 (254)
256 PRK08618 ornithine cyclodeamin 83.3 3.8 8.1E-05 36.0 6.4 45 192-236 124-169 (325)
257 PRK03659 glutathione-regulated 83.2 2.4 5.2E-05 40.5 5.5 42 195-237 400-441 (601)
258 PRK08644 thiamine biosynthesis 83.1 2.7 5.8E-05 34.6 5.1 35 194-228 27-61 (212)
259 PRK08261 fabG 3-ketoacyl-(acyl 83.1 1.1 2.4E-05 40.8 3.1 42 188-230 27-73 (450)
260 PRK14175 bifunctional 5,10-met 82.9 5.6 0.00012 34.4 7.1 55 174-230 137-193 (286)
261 PRK07364 2-octaprenyl-6-methox 82.7 2 4.3E-05 38.6 4.6 34 196-230 19-52 (415)
262 PRK08223 hypothetical protein; 82.7 2.5 5.5E-05 36.5 4.9 36 194-229 26-61 (287)
263 PRK13984 putative oxidoreducta 82.6 2.7 5.8E-05 40.1 5.6 37 192-229 280-316 (604)
264 PRK15116 sulfur acceptor prote 82.4 2.8 6.1E-05 35.8 5.1 36 194-229 29-64 (268)
265 cd01492 Aos1_SUMO Ubiquitin ac 82.3 2.9 6.3E-05 33.9 5.0 36 194-229 20-55 (197)
266 TIGR02992 ectoine_eutC ectoine 82.2 3.7 8E-05 36.0 5.9 44 193-236 127-171 (326)
267 PRK11790 D-3-phosphoglycerate 82.1 3 6.5E-05 37.9 5.5 35 194-229 150-184 (409)
268 PLN02695 GDP-D-mannose-3',5'-e 81.9 2.9 6.3E-05 37.2 5.3 34 194-228 20-54 (370)
269 PRK08291 ectoine utilization p 81.8 4.1 8.9E-05 35.8 6.1 45 193-237 130-175 (330)
270 PRK14030 glutamate dehydrogena 81.8 3.2 6.8E-05 38.1 5.4 32 193-225 226-257 (445)
271 TIGR01381 E1_like_apg7 E1-like 81.8 2.7 5.8E-05 40.3 5.1 36 194-229 337-372 (664)
272 PF00289 CPSase_L_chain: Carba 81.7 1.8 3.9E-05 31.8 3.2 36 196-232 3-38 (110)
273 PRK08317 hypothetical protein; 81.6 4.3 9.3E-05 33.0 5.9 51 186-237 11-62 (241)
274 PRK05597 molybdopterin biosynt 81.6 3.1 6.8E-05 37.0 5.3 36 194-229 27-62 (355)
275 PRK00257 erythronate-4-phospha 81.3 3.2 7E-05 37.4 5.3 37 192-229 113-149 (381)
276 TIGR01317 GOGAT_sm_gam glutama 81.2 3.4 7.3E-05 38.4 5.6 36 193-229 141-176 (485)
277 PTZ00414 10 kDa heat shock pro 81.1 4.7 0.0001 29.1 5.1 23 72-94 46-72 (100)
278 PRK04176 ribulose-1,5-biphosph 81.1 2.9 6.2E-05 35.4 4.7 33 196-229 26-58 (257)
279 PRK05600 thiamine biosynthesis 81.0 3.3 7.1E-05 37.1 5.2 36 194-229 40-75 (370)
280 PRK12779 putative bifunctional 80.8 2.9 6.2E-05 42.2 5.2 36 193-229 304-339 (944)
281 COG1052 LdhA Lactate dehydroge 80.8 3.9 8.4E-05 36.0 5.5 37 193-230 144-180 (324)
282 PLN02206 UDP-glucuronate decar 80.7 3.4 7.3E-05 37.9 5.3 33 194-227 118-151 (442)
283 PLN02366 spermidine synthase 80.7 3.4 7.3E-05 36.1 5.1 45 193-238 90-134 (308)
284 TIGR01316 gltA glutamate synth 80.6 3.5 7.5E-05 37.8 5.4 36 193-229 131-166 (449)
285 PLN02572 UDP-sulfoquinovose sy 80.5 3.1 6.8E-05 38.1 5.1 33 193-226 45-78 (442)
286 TIGR00292 thiazole biosynthesi 80.4 3 6.6E-05 35.2 4.6 33 196-229 22-54 (254)
287 PRK12770 putative glutamate sy 80.4 3.7 8.1E-05 36.2 5.4 37 192-229 15-51 (352)
288 PRK15438 erythronate-4-phospha 79.9 4.1 8.8E-05 36.7 5.5 36 192-228 113-148 (378)
289 cd01491 Ube1_repeat1 Ubiquitin 79.6 3.9 8.5E-05 35.3 5.1 36 194-229 18-53 (286)
290 cd01485 E1-1_like Ubiquitin ac 79.6 4 8.6E-05 33.1 4.9 36 194-229 18-53 (198)
291 PRK09853 putative selenate red 79.3 3.5 7.6E-05 41.7 5.3 36 193-229 537-572 (1019)
292 COG2518 Pcm Protein-L-isoaspar 79.0 7.7 0.00017 31.9 6.3 48 186-236 64-111 (209)
293 KOG2018 Predicted dinucleotide 79.0 3.9 8.5E-05 35.7 4.8 42 192-233 71-112 (430)
294 PLN02735 carbamoyl-phosphate s 79.0 3.5 7.7E-05 42.3 5.3 52 178-230 6-68 (1102)
295 PLN02306 hydroxypyruvate reduc 78.9 4.1 9E-05 36.7 5.2 35 194-229 164-199 (386)
296 COG0281 SfcA Malic enzyme [Ene 78.7 4.4 9.6E-05 36.7 5.2 48 181-228 185-234 (432)
297 PLN02927 antheraxanthin epoxid 78.6 3.5 7.5E-05 39.9 4.9 37 192-229 78-114 (668)
298 PLN02166 dTDP-glucose 4,6-dehy 78.6 4.5 9.8E-05 37.0 5.5 35 193-228 118-153 (436)
299 PRK08132 FAD-dependent oxidore 78.6 3.2 6.9E-05 39.0 4.6 33 196-229 24-56 (547)
300 PRK08125 bifunctional UDP-gluc 78.4 4 8.6E-05 39.4 5.3 39 192-231 312-352 (660)
301 COG1179 Dinucleotide-utilizing 78.3 3.5 7.6E-05 34.7 4.2 36 194-229 29-64 (263)
302 PRK06567 putative bifunctional 78.2 4.5 9.8E-05 40.8 5.6 35 193-228 381-415 (1028)
303 PRK07878 molybdopterin biosynt 77.9 4.2 9.1E-05 36.7 5.0 36 194-229 41-76 (392)
304 PRK11749 dihydropyrimidine deh 77.7 4.5 9.8E-05 37.1 5.2 36 193-229 138-173 (457)
305 PRK07411 hypothetical protein; 77.3 4.5 9.9E-05 36.5 5.0 36 194-229 37-72 (390)
306 TIGR03315 Se_ygfK putative sel 77.2 4.3 9.4E-05 41.1 5.3 35 194-229 536-570 (1012)
307 PRK14533 groES co-chaperonin G 77.1 8.1 0.00018 27.3 5.2 25 72-96 37-65 (91)
308 PF13580 SIS_2: SIS domain; PD 77.0 6.5 0.00014 29.8 5.2 40 186-226 95-137 (138)
309 PF00208 ELFV_dehydrog: Glutam 77.0 6.2 0.00013 33.2 5.4 32 193-225 30-61 (244)
310 PRK14192 bifunctional 5,10-met 76.9 12 0.00025 32.3 7.2 38 192-230 156-194 (283)
311 PLN02948 phosphoribosylaminoim 76.6 5.6 0.00012 37.9 5.6 37 193-230 20-56 (577)
312 PLN02477 glutamate dehydrogena 76.6 5.6 0.00012 36.2 5.4 35 193-228 204-239 (410)
313 PRK04457 spermidine synthase; 76.5 8.1 0.00017 32.8 6.1 46 193-239 65-110 (262)
314 PRK09414 glutamate dehydrogena 76.3 7.9 0.00017 35.6 6.3 32 193-225 230-261 (445)
315 PRK06153 hypothetical protein; 76.0 4.4 9.5E-05 36.5 4.4 36 194-229 175-210 (393)
316 PRK00364 groES co-chaperonin G 76.0 6.8 0.00015 27.9 4.7 24 72-95 37-69 (95)
317 PRK12778 putative bifunctional 75.6 5.9 0.00013 38.9 5.7 34 194-228 430-463 (752)
318 PLN00093 geranylgeranyl diphos 75.2 4.6 0.0001 37.1 4.6 34 196-230 40-73 (450)
319 PTZ00245 ubiquitin activating 75.1 7 0.00015 33.3 5.2 36 194-229 25-60 (287)
320 PRK15409 bifunctional glyoxyla 75.1 5.9 0.00013 34.8 5.0 34 194-228 144-178 (323)
321 PLN02256 arogenate dehydrogena 75.1 9.8 0.00021 33.1 6.4 44 186-230 27-70 (304)
322 KOG0685 Flavin-containing amin 74.7 6.6 0.00014 36.2 5.3 38 192-229 18-55 (498)
323 PRK11207 tellurite resistance 74.7 7.2 0.00016 31.4 5.1 46 188-236 24-69 (197)
324 PRK06481 fumarate reductase fl 74.6 4.8 0.0001 37.5 4.6 34 195-229 61-94 (506)
325 PF01135 PCMT: Protein-L-isoas 74.6 8.8 0.00019 31.5 5.6 50 186-236 64-114 (209)
326 KOG1203 Predicted dehydrogenas 74.3 6.9 0.00015 35.5 5.3 42 191-233 75-117 (411)
327 PRK08294 phenol 2-monooxygenas 74.0 3.9 8.4E-05 39.4 3.9 34 196-230 33-67 (634)
328 PRK08605 D-lactate dehydrogena 74.0 6.6 0.00014 34.6 5.1 36 194-230 145-181 (332)
329 PLN02463 lycopene beta cyclase 74.0 5.6 0.00012 36.6 4.7 32 197-229 30-61 (447)
330 PF13738 Pyr_redox_3: Pyridine 73.9 5.6 0.00012 31.6 4.3 38 193-231 165-202 (203)
331 PRK06046 alanine dehydrogenase 73.6 12 0.00027 32.7 6.7 44 193-236 127-171 (326)
332 PRK07121 hypothetical protein; 73.6 5.7 0.00012 36.8 4.8 33 196-229 21-53 (492)
333 PRK05562 precorrin-2 dehydroge 73.4 9.1 0.0002 31.8 5.5 34 194-228 24-57 (223)
334 PRK11730 fadB multifunctional 73.3 7.5 0.00016 38.0 5.7 39 196-235 314-352 (715)
335 PLN02852 ferredoxin-NADP+ redu 73.2 7.3 0.00016 36.3 5.4 36 193-229 24-61 (491)
336 PTZ00188 adrenodoxin reductase 73.1 8.5 0.00019 35.9 5.7 35 194-229 38-73 (506)
337 PRK13942 protein-L-isoaspartat 72.6 15 0.00032 30.0 6.6 51 186-237 68-119 (212)
338 PF01946 Thi4: Thi4 family; PD 72.6 6.3 0.00014 32.8 4.2 32 197-229 19-50 (230)
339 PRK13581 D-3-phosphoglycerate 72.4 8.8 0.00019 36.1 5.8 34 194-228 139-172 (526)
340 PLN02823 spermine synthase 72.0 9.5 0.00021 33.7 5.6 45 194-239 103-147 (336)
341 PRK05479 ketol-acid reductoiso 71.9 9.9 0.00021 33.5 5.6 35 193-228 15-49 (330)
342 PRK12775 putative trifunctiona 71.2 7.5 0.00016 39.6 5.3 35 194-229 429-463 (1006)
343 PF01408 GFO_IDH_MocA: Oxidore 71.1 12 0.00026 26.9 5.2 41 197-237 2-44 (120)
344 PHA01634 hypothetical protein 70.9 11 0.00024 28.7 4.8 39 194-236 28-68 (156)
345 KOG0069 Glyoxylate/hydroxypyru 70.5 8.8 0.00019 33.9 5.0 43 193-236 160-202 (336)
346 COG0476 ThiF Dinucleotide-util 70.5 6.9 0.00015 32.9 4.3 36 194-229 29-64 (254)
347 cd00320 cpn10 Chaperonin 10 Kd 70.5 6.1 0.00013 28.0 3.3 26 71-96 35-69 (93)
348 PF03949 Malic_M: Malic enzyme 70.4 6.9 0.00015 33.2 4.1 46 183-228 13-68 (255)
349 PRK00216 ubiE ubiquinone/menaq 70.3 12 0.00026 30.4 5.6 49 188-237 45-94 (239)
350 cd05312 NAD_bind_1_malic_enz N 70.2 10 0.00022 32.6 5.2 36 193-228 23-68 (279)
351 TIGR00417 speE spermidine synt 70.2 10 0.00022 32.2 5.3 44 194-238 72-115 (270)
352 TIGR02437 FadB fatty oxidation 70.2 9.7 0.00021 37.3 5.7 39 196-235 314-352 (714)
353 PRK01438 murD UDP-N-acetylmura 69.8 14 0.00031 34.0 6.5 27 193-219 14-40 (480)
354 TIGR01327 PGDH D-3-phosphoglyc 69.8 11 0.00024 35.4 5.8 34 194-228 137-170 (525)
355 TIGR02441 fa_ox_alpha_mit fatt 69.4 10 0.00022 37.3 5.6 40 196-236 336-375 (737)
356 COG2242 CobL Precorrin-6B meth 68.7 18 0.00038 29.2 5.9 49 188-237 28-76 (187)
357 PRK09754 phenylpropionate diox 68.7 9.9 0.00021 34.1 5.1 37 192-229 141-177 (396)
358 cd00762 NAD_bind_malic_enz NAD 68.6 7.9 0.00017 32.8 4.1 39 190-228 20-68 (254)
359 PRK13944 protein-L-isoaspartat 68.0 22 0.00047 28.8 6.5 50 186-236 64-114 (205)
360 PRK01581 speE spermidine synth 67.8 16 0.00034 32.8 6.0 44 193-237 149-192 (374)
361 PLN02985 squalene monooxygenas 67.7 9.5 0.00021 35.7 4.9 33 196-229 44-76 (514)
362 KOG1252 Cystathionine beta-syn 67.5 18 0.00038 32.1 6.1 48 188-236 96-147 (362)
363 PF10727 Rossmann-like: Rossma 67.4 3.4 7.4E-05 31.1 1.6 41 195-236 10-51 (127)
364 PF01564 Spermine_synth: Sperm 67.3 6.3 0.00014 33.2 3.3 45 194-239 76-120 (246)
365 PLN00016 RNA-binding protein; 67.2 8.1 0.00018 34.3 4.2 38 193-231 50-92 (378)
366 TIGR00438 rrmJ cell division p 67.0 14 0.0003 29.3 5.2 42 189-230 27-68 (188)
367 PRK12831 putative oxidoreducta 66.9 12 0.00025 34.6 5.3 36 192-228 278-313 (464)
368 TIGR01316 gltA glutamate synth 66.9 12 0.00026 34.3 5.3 36 192-228 269-304 (449)
369 PRK14191 bifunctional 5,10-met 66.7 29 0.00063 30.0 7.3 54 174-229 136-191 (285)
370 PF08704 GCD14: tRNA methyltra 66.5 14 0.0003 31.2 5.2 52 186-238 32-84 (247)
371 cd05212 NAD_bind_m-THF_DH_Cycl 66.1 33 0.0007 26.3 6.8 42 187-229 19-62 (140)
372 PRK13656 trans-2-enoyl-CoA red 65.6 13 0.00029 33.6 5.2 33 193-227 39-74 (398)
373 PTZ00367 squalene epoxidase; P 65.0 11 0.00024 35.9 4.8 33 196-229 34-66 (567)
374 PTZ00098 phosphoethanolamine N 65.0 22 0.00048 30.0 6.3 50 186-237 44-93 (263)
375 TIGR01373 soxB sarcosine oxida 64.3 13 0.00028 33.2 5.0 39 190-228 25-64 (407)
376 COG1635 THI4 Ribulose 1,5-bisp 64.2 11 0.00023 31.6 3.9 32 196-228 31-62 (262)
377 PRK15317 alkyl hydroperoxide r 64.2 11 0.00024 35.2 4.6 31 195-226 211-241 (517)
378 PF10294 Methyltransf_16: Puta 64.0 8.5 0.00019 30.4 3.3 45 190-236 41-85 (173)
379 PRK08287 cobalt-precorrin-6Y C 63.8 31 0.00067 27.2 6.6 49 188-237 25-73 (187)
380 TIGR03329 Phn_aa_oxid putative 63.4 12 0.00026 34.3 4.7 32 197-229 26-59 (460)
381 TIGR02440 FadJ fatty oxidation 63.3 17 0.00036 35.5 5.8 39 196-235 305-344 (699)
382 TIGR00080 pimt protein-L-isoas 63.3 27 0.00059 28.4 6.3 51 186-237 69-120 (215)
383 PRK00107 gidB 16S rRNA methylt 63.2 23 0.0005 28.4 5.7 45 192-237 43-87 (187)
384 COG1249 Lpd Pyruvate/2-oxoglut 63.0 14 0.00031 34.1 5.0 37 193-230 171-207 (454)
385 PRK12770 putative glutamate sy 62.4 17 0.00037 32.0 5.3 34 195-228 172-205 (352)
386 PRK13255 thiopurine S-methyltr 62.4 23 0.00049 29.2 5.7 42 191-235 34-75 (218)
387 PRK11154 fadJ multifunctional 62.2 17 0.00037 35.5 5.6 39 196-235 310-349 (708)
388 PRK01747 mnmC bifunctional tRN 61.9 12 0.00027 36.0 4.6 33 196-229 261-293 (662)
389 TIGR02371 ala_DH_arch alanine 61.8 33 0.00071 30.1 6.9 44 193-236 126-170 (325)
390 PLN02464 glycerol-3-phosphate 61.7 13 0.00029 35.7 4.8 33 196-229 72-104 (627)
391 PRK11749 dihydropyrimidine deh 61.6 19 0.0004 33.0 5.6 37 192-228 270-306 (457)
392 PTZ00139 Succinate dehydrogena 61.6 12 0.00027 35.8 4.5 32 197-229 31-62 (617)
393 cd01493 APPBP1_RUB Ubiquitin a 60.9 17 0.00036 33.3 5.0 36 194-229 19-54 (425)
394 TIGR03840 TMPT_Se_Te thiopurin 60.9 22 0.00049 29.1 5.4 41 192-235 32-72 (213)
395 COG0446 HcaD Uncharacterized N 60.8 16 0.00036 32.1 5.0 35 195-230 136-170 (415)
396 KOG1610 Corticosteroid 11-beta 60.8 22 0.00048 31.1 5.4 44 192-236 26-70 (322)
397 PRK14194 bifunctional 5,10-met 60.7 36 0.00078 29.7 6.8 55 174-230 138-194 (301)
398 PRK07573 sdhA succinate dehydr 60.6 13 0.00029 35.8 4.6 30 197-227 37-66 (640)
399 COG1148 HdrA Heterodisulfide r 60.6 15 0.00033 34.2 4.6 38 192-230 121-158 (622)
400 PRK11823 DNA repair protein Ra 60.6 43 0.00092 30.8 7.7 21 98-118 9-29 (446)
401 PRK06407 ornithine cyclodeamin 60.5 28 0.00061 30.2 6.2 43 193-235 115-158 (301)
402 PRK14851 hypothetical protein; 59.8 17 0.00037 35.3 5.1 36 194-229 42-77 (679)
403 PRK12778 putative bifunctional 59.4 17 0.00037 35.7 5.2 37 192-228 567-603 (752)
404 PLN03075 nicotianamine synthas 59.2 31 0.00068 29.9 6.2 45 194-238 123-168 (296)
405 COG0234 GroS Co-chaperonin Gro 59.1 24 0.00052 25.2 4.4 24 72-95 37-69 (96)
406 PLN00128 Succinate dehydrogena 59.1 14 0.00031 35.6 4.5 31 197-228 52-82 (635)
407 PRK07402 precorrin-6B methylas 59.0 35 0.00075 27.2 6.2 48 187-237 33-82 (196)
408 PF02423 OCD_Mu_crystall: Orni 58.9 22 0.00047 31.0 5.2 45 193-237 126-171 (313)
409 PRK14188 bifunctional 5,10-met 58.7 44 0.00095 29.0 7.0 55 174-230 137-194 (296)
410 PRK12814 putative NADPH-depend 58.5 21 0.00046 34.5 5.5 38 191-228 319-356 (652)
411 PRK13748 putative mercuric red 58.4 17 0.00036 34.2 4.8 31 197-228 100-130 (561)
412 PF02882 THF_DHG_CYH_C: Tetrah 58.1 34 0.00074 26.8 5.7 44 186-230 26-71 (160)
413 PLN02328 lysine-specific histo 57.7 17 0.00038 36.0 4.8 34 195-229 238-271 (808)
414 PRK05579 bifunctional phosphop 57.6 23 0.00049 32.2 5.2 36 193-229 186-238 (399)
415 PRK01683 trans-aconitate 2-met 57.5 32 0.00069 28.6 5.9 51 186-237 23-73 (258)
416 TIGR01372 soxA sarcosine oxida 57.3 15 0.00033 37.3 4.6 33 196-229 164-196 (985)
417 KOG0399 Glutamate synthase [Am 57.3 15 0.00034 37.8 4.3 36 193-229 1783-1818(2142)
418 PRK07251 pyridine nucleotide-d 57.2 23 0.00049 32.2 5.3 35 194-229 156-190 (438)
419 COG0059 IlvC Ketol-acid reduct 57.2 27 0.00058 30.6 5.3 45 192-236 15-59 (338)
420 TIGR01138 cysM cysteine syntha 57.1 52 0.0011 28.2 7.3 49 188-236 52-102 (290)
421 PLN02529 lysine-specific histo 57.1 20 0.00043 35.3 5.1 35 194-229 159-193 (738)
422 PF12242 Eno-Rase_NADH_b: NAD( 57.0 30 0.00065 23.7 4.5 37 190-227 34-72 (78)
423 COG0421 SpeE Spermidine syntha 57.0 23 0.0005 30.5 5.0 47 191-239 74-120 (282)
424 PRK04965 NADH:flavorubredoxin 56.9 22 0.00048 31.5 5.1 37 192-229 138-174 (377)
425 PLN02676 polyamine oxidase 56.8 20 0.00044 33.3 5.0 35 195-229 26-60 (487)
426 PLN02602 lactate dehydrogenase 56.8 29 0.00064 30.8 5.8 38 196-233 38-76 (350)
427 COG0493 GltD NADPH-dependent g 56.7 18 0.0004 33.4 4.6 37 192-229 120-156 (457)
428 COG2226 UbiE Methylase involve 56.6 42 0.0009 28.2 6.3 49 188-237 45-93 (238)
429 COG0031 CysK Cysteine synthase 56.4 45 0.00098 29.0 6.6 49 187-236 54-105 (300)
430 PLN02697 lycopene epsilon cycl 56.4 18 0.00039 34.1 4.6 30 197-227 110-139 (529)
431 TIGR03140 AhpF alkyl hydropero 56.4 19 0.0004 33.7 4.7 33 193-226 210-242 (515)
432 PRK07846 mycothione reductase; 56.4 23 0.0005 32.5 5.2 34 195-229 166-199 (451)
433 PRK12810 gltD glutamate syntha 56.2 23 0.0005 32.6 5.2 34 193-226 279-312 (471)
434 TIGR01317 GOGAT_sm_gam glutama 56.2 25 0.00055 32.6 5.5 36 193-228 281-316 (485)
435 COG0503 Apt Adenine/guanine ph 56.1 31 0.00066 27.5 5.3 35 189-224 110-148 (179)
436 PRK13403 ketol-acid reductoiso 56.0 30 0.00065 30.6 5.5 27 193-219 14-40 (335)
437 TIGR01372 soxA sarcosine oxida 55.9 38 0.00083 34.5 7.1 42 188-229 310-351 (985)
438 PLN02565 cysteine synthase 55.9 46 0.00099 29.1 6.8 49 188-236 59-110 (322)
439 PRK05976 dihydrolipoamide dehy 55.9 22 0.00048 32.7 5.1 34 195-229 180-213 (472)
440 PRK06115 dihydrolipoamide dehy 55.7 26 0.00056 32.2 5.5 35 194-229 173-207 (466)
441 PRK14968 putative methyltransf 55.5 26 0.00056 27.3 4.8 42 192-236 21-62 (188)
442 PLN02661 Putative thiazole syn 55.3 19 0.00042 32.1 4.3 34 195-229 92-126 (357)
443 PRK12775 putative trifunctiona 55.2 23 0.0005 36.1 5.4 36 192-227 568-603 (1006)
444 PRK06467 dihydrolipoamide dehy 55.0 25 0.00053 32.5 5.2 35 194-229 173-207 (471)
445 PLN02336 phosphoethanolamine N 55.0 29 0.00063 31.9 5.7 46 189-236 261-306 (475)
446 PRK05225 ketol-acid reductoiso 55.0 11 0.00024 34.9 2.7 35 192-226 33-67 (487)
447 PF05185 PRMT5: PRMT5 arginine 54.6 20 0.00044 33.0 4.5 40 195-234 187-229 (448)
448 PRK05249 soluble pyridine nucl 54.4 25 0.00054 32.1 5.2 35 194-229 174-208 (461)
449 PLN02556 cysteine synthase/L-3 54.4 50 0.0011 29.6 6.9 49 188-236 103-154 (368)
450 TIGR03385 CoA_CoA_reduc CoA-di 54.3 26 0.00056 31.6 5.2 35 194-229 136-170 (427)
451 COG2519 GCD14 tRNA(1-methylade 53.9 35 0.00076 28.9 5.4 51 186-237 86-137 (256)
452 KOG2862 Alanine-glyoxylate ami 53.9 27 0.00058 30.7 4.8 36 192-228 89-124 (385)
453 PF03853 YjeF_N: YjeF-related 53.8 26 0.00057 27.5 4.5 38 186-224 16-57 (169)
454 PF00166 Cpn10: Chaperonin 10 53.5 17 0.00037 25.6 3.1 26 71-96 35-69 (93)
455 PRK00312 pcm protein-L-isoaspa 53.2 36 0.00079 27.4 5.4 49 186-237 70-118 (212)
456 PRK06370 mercuric reductase; V 53.1 28 0.0006 31.9 5.2 35 194-229 170-204 (463)
457 PLN02503 fatty acyl-CoA reduct 52.8 27 0.00059 33.5 5.2 41 190-230 114-157 (605)
458 PRK11761 cysM cysteine synthas 52.8 68 0.0015 27.6 7.3 49 188-236 56-106 (296)
459 PLN02712 arogenate dehydrogena 52.8 35 0.00075 33.2 6.0 36 194-230 368-403 (667)
460 PF02629 CoA_binding: CoA bind 52.8 25 0.00054 24.7 3.9 38 195-232 3-41 (96)
461 PRK10258 biotin biosynthesis p 52.7 39 0.00084 28.0 5.7 45 190-237 38-82 (251)
462 TIGR03452 mycothione_red mycot 52.7 25 0.00054 32.2 4.8 34 195-229 169-202 (452)
463 PRK10717 cysteine synthase A; 52.6 60 0.0013 28.3 7.1 40 188-227 57-96 (330)
464 PRK06327 dihydrolipoamide dehy 52.5 29 0.00062 32.0 5.2 34 195-229 183-216 (475)
465 PTZ00306 NADH-dependent fumara 52.5 21 0.00045 37.1 4.6 32 197-229 411-442 (1167)
466 PLN03013 cysteine synthase 52.4 49 0.0011 30.4 6.5 49 188-236 167-218 (429)
467 COG0499 SAM1 S-adenosylhomocys 52.2 26 0.00056 31.4 4.5 39 192-231 206-244 (420)
468 PRK13512 coenzyme A disulfide 52.0 28 0.00061 31.7 5.0 35 194-229 147-181 (438)
469 PRK07818 dihydrolipoamide dehy 51.7 29 0.00063 31.8 5.1 34 195-229 172-205 (466)
470 PLN02819 lysine-ketoglutarate 51.5 35 0.00076 35.0 5.9 43 194-236 568-623 (1042)
471 COG4821 Uncharacterized protei 51.4 34 0.00075 28.1 4.8 44 186-230 96-142 (243)
472 PRK06292 dihydrolipoamide dehy 51.3 30 0.00066 31.5 5.2 35 194-229 168-202 (460)
473 PTZ00058 glutathione reductase 51.2 30 0.00064 32.9 5.1 35 194-229 236-270 (561)
474 PRK14103 trans-aconitate 2-met 51.1 46 0.00099 27.8 5.9 49 186-236 21-70 (255)
475 PRK12862 malic enzyme; Reviewe 51.1 27 0.00059 34.5 5.0 46 183-228 181-228 (763)
476 PF01113 DapB_N: Dihydrodipico 51.1 33 0.00072 25.4 4.5 33 197-229 2-36 (124)
477 TIGR00477 tehB tellurite resis 51.1 51 0.0011 26.4 5.9 48 186-236 22-69 (195)
478 TIGR01421 gluta_reduc_1 glutat 51.0 30 0.00064 31.7 5.0 34 195-229 166-199 (450)
479 PRK06199 ornithine cyclodeamin 50.8 74 0.0016 28.6 7.4 43 193-235 153-197 (379)
480 COG1926 Predicted phosphoribos 50.7 40 0.00087 27.8 5.1 36 193-228 122-161 (220)
481 PLN03000 amine oxidase 50.5 27 0.00058 35.0 4.8 35 194-229 183-217 (881)
482 PRK06416 dihydrolipoamide dehy 50.5 32 0.00068 31.5 5.2 34 195-229 172-205 (462)
483 TIGR02053 MerA mercuric reduct 50.5 31 0.00067 31.6 5.1 34 195-229 166-199 (463)
484 PRK14189 bifunctional 5,10-met 50.3 64 0.0014 27.9 6.6 54 174-229 137-192 (285)
485 COG0075 Serine-pyruvate aminot 50.2 33 0.00071 31.0 5.0 36 192-228 77-112 (383)
486 PRK11199 tyrA bifunctional cho 50.1 35 0.00076 30.5 5.2 35 194-229 97-132 (374)
487 PRK14852 hypothetical protein; 50.0 29 0.00062 35.2 4.9 36 194-229 331-366 (989)
488 PRK12779 putative bifunctional 49.9 30 0.00065 35.1 5.2 34 194-228 446-479 (944)
489 TIGR01139 cysK cysteine syntha 49.9 76 0.0016 27.2 7.2 48 188-235 50-99 (298)
490 PTZ00058 glutathione reductase 49.8 28 0.0006 33.1 4.7 31 197-228 50-80 (561)
491 PRK06823 ornithine cyclodeamin 49.8 55 0.0012 28.6 6.3 44 193-236 126-170 (315)
492 PRK07232 bifunctional malic en 49.8 32 0.00069 33.9 5.2 46 183-228 173-220 (752)
493 PLN02852 ferredoxin-NADP+ redu 49.7 39 0.00085 31.5 5.6 38 192-229 163-220 (491)
494 PRK12861 malic enzyme; Reviewe 49.5 25 0.00054 34.7 4.4 45 183-227 177-223 (764)
495 PF11017 DUF2855: Protein of u 49.5 1.3E+02 0.0029 26.3 8.5 81 148-232 90-175 (314)
496 PLN02487 zeta-carotene desatur 49.4 33 0.00072 32.6 5.2 33 196-229 76-108 (569)
497 TIGR01136 cysKM cysteine synth 49.3 82 0.0018 27.0 7.3 49 188-236 51-101 (299)
498 TIGR01042 V-ATPase_V1_A V-type 49.3 62 0.0013 30.9 6.8 58 175-233 206-265 (591)
499 KOG2017 Molybdopterin synthase 49.1 14 0.00029 32.9 2.3 34 194-227 65-98 (427)
500 PRK09564 coenzyme A disulfide 48.9 36 0.00077 30.8 5.2 35 194-229 148-182 (444)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=1.1e-49 Score=343.52 Aligned_cols=208 Identities=38% Similarity=0.540 Sum_probs=197.8
Q ss_pred ccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
+++|||+++++.+++++++|++.|+|+++||+|+|+++|||++|++.+.|.++...+|.++|||.+|+|+++|++|+.|+
T Consensus 1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k 80 (339)
T COG1064 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK 80 (339)
T ss_pred CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence 46899999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CCCEEee-cCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414 87 PGDHVIP-CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (239)
Q Consensus 87 ~Gd~V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~ 165 (239)
+||||.+ +...+|++|.+|++++.+.|++... .|+. .+| +|+||+++|+.+++++|+
T Consensus 81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~-~~G------------------Gyaeyv~v~~~~~~~iP~ 138 (339)
T COG1064 81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYT-TDG------------------GYAEYVVVPARYVVKIPE 138 (339)
T ss_pred CCCEEEecCccCCCCCCccccCcccccCCCccc---ccee-ecC------------------cceeEEEEchHHeEECCC
Confidence 9999999 9999999999999999999998665 5666 666 999999999999999999
Q ss_pred CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~ 238 (239)
++++++||.+.|+..|.|+++ ...+++||++|+|.|.|++|++|+|+|+++|+ +|++++++++|+++++++
T Consensus 139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHh
Confidence 999999999999999999987 56999999999999999999999999999997 999999999999998764
No 2
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=2.1e-47 Score=324.21 Aligned_cols=229 Identities=62% Similarity=1.060 Sum_probs=222.9
Q ss_pred cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
+++||.+..++++||+++|+++++|++||||||+.++|+||+|...++|..+.. +|.++|||++|+|+++|++|+.+++
T Consensus 1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp 79 (366)
T COG1062 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP 79 (366)
T ss_pred CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence 468999999999999999999999999999999999999999999999998886 9999999999999999999999999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
||+|+.....+|++|.+|.+++++.|...+.....|.. .||++|.+.++.+++++++.++|++|.++++.++++++++.
T Consensus 80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m-~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~ 158 (366)
T COG1062 80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM-PDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA 158 (366)
T ss_pred CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccc-cCCceeeecCCcceeeeeccccchhheeecccceEECCCCC
Confidence 99999999999999999999999999999998889976 99999999999999999999999999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~ 238 (239)
+++.++++.|..+|.+.++.+..++++|++|.|.|.|.+|++++|-|+..|+.++|++|.+++|++++++|
T Consensus 159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865
No 3
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.4e-47 Score=318.61 Aligned_cols=234 Identities=76% Similarity=1.248 Sum_probs=227.7
Q ss_pred CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (239)
Q Consensus 5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 84 (239)
..+.+|||.+.+++++||.++|+..++|+.+||+||++++++|++|...++|..+...||.++|||++|+|+++|++|++
T Consensus 3 gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~ 82 (375)
T KOG0022|consen 3 GKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTT 82 (375)
T ss_pred CCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccc
Confidence 56789999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (239)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 164 (239)
+++||+|+......|+.|.+|.++..|.|..++.....+....||.+|+.-+|+.+|||++..+|+||.++++..+++|+
T Consensus 83 vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId 162 (375)
T KOG0022|consen 83 VKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKID 162 (375)
T ss_pred cCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecC
Confidence 99999999999999999999999999999999999888888789999999999999999999999999999999999999
Q ss_pred CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~ 238 (239)
+..+.+.++.+.|.+.|+|.|+.+.+++++|+++.|+|.|.+|+++++-+|+.|++++|++|.+++|.++++++
T Consensus 163 ~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 163 PSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred CCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764
No 4
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.1e-43 Score=293.40 Aligned_cols=218 Identities=31% Similarity=0.496 Sum_probs=194.3
Q ss_pred CCCCCcccceeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEe
Q 026414 1 MSTEGQVITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV 78 (239)
Q Consensus 1 m~~~~~~~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~v 78 (239)
|+++..|.+++++.+..++. ++++.+++.|+|+++||+|+++++|||++|++.+.|..+...+|.++|||.+|+|+++
T Consensus 1 ~~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~Vvkv 80 (360)
T KOG0023|consen 1 MSSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKV 80 (360)
T ss_pred CCcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEE
Confidence 77788999999999999888 5777999999999999999999999999999999999888899999999999999999
Q ss_pred CCCCCCCCCCCEE-eecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec
Q 026414 79 GEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (239)
Q Consensus 79 G~~v~~~~~Gd~V-~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (239)
|++|+.|++|||| +.+...+|..|.+|.++..+.|++.-.. ..|.. .|| ....|+|++|+++++
T Consensus 81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t-~~g~~-~DG-------------t~~~ggf~~~~~v~~ 145 (360)
T KOG0023|consen 81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFT-YNGVY-HDG-------------TITQGGFQEYAVVDE 145 (360)
T ss_pred CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEe-ccccc-cCC-------------CCccCccceeEEEee
Confidence 9999999999999 4566779999999999999999953321 12222 444 666779999999999
Q ss_pred ceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 158 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
.++++||++++.++||.+.|+..|+|.++ .+.+++||.++-|.|+|++|.+++|+||++|. +|+++++++.|.+.+
T Consensus 146 ~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea 221 (360)
T KOG0023|consen 146 VFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEA 221 (360)
T ss_pred eeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHH
Confidence 99999999999999999999999999977 77888899999999997799999999999999 999999998444443
No 5
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.4e-42 Score=289.00 Aligned_cols=207 Identities=29% Similarity=0.409 Sum_probs=190.3
Q ss_pred cceeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCC---CCCeeeeeeEEEEEEEeCCCCC
Q 026414 8 ITCKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEG---LFPCILGHEAAGIVESVGEGVT 83 (239)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~---~~p~~~G~e~vG~Vv~vG~~v~ 83 (239)
.+|+|+++.++++ +++++.|.|++ .|+||+|++.++|||++|++.+....... +.|.++|||.+|+|.++|++|+
T Consensus 3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 5899999999999 99999999987 99999999999999999999987664333 5899999999999999999999
Q ss_pred CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (239)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (239)
++++||||++.|..+|+.|++|++++.|.|++...- +.-..|| ++++|++.++++++++
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~---atpp~~G------------------~la~y~~~~~dfc~KL 140 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFC---ATPPVDG------------------TLAEYYVHPADFCYKL 140 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCccccc---cCCCcCC------------------ceEEEEEechHheeeC
Confidence 999999999999999999999999999999986652 2222445 9999999999999999
Q ss_pred CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~ 238 (239)
||+++++++|++. +++++++|. .++.+++|++|||+|+|++|+++...||++|+.+|++++-.++|+++|+++
T Consensus 141 Pd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~ 213 (354)
T KOG0024|consen 141 PDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF 213 (354)
T ss_pred CCCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh
Confidence 9999999999987 688999976 899999999999999999999999999999999999999999999999874
No 6
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=3.3e-39 Score=286.79 Aligned_cols=227 Identities=65% Similarity=1.095 Sum_probs=193.5
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
||++++...+++++++++|.|+|+++||+|||++++||++|++.+.|..+...+|.++|||++|+|+++|+++++|++||
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd 81 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD 81 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence 89999998888899999999999999999999999999999999988765556799999999999999999999999999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
||++.+..+|++|.+|..++.+.|.+.......|+. .+|..++...|...++..+.|+|+||+.+|.+.++++|+++++
T Consensus 82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~ 160 (368)
T TIGR02818 82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL 160 (368)
T ss_pred EEEEcCCCCCCCChhhhCCCcccccCcccccccccc-cCCccccccCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence 999999999999999999999999875432223332 2221122112211122223469999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++.+.+++.|+|+++....++++|++|||+|+|++|++++|+|+++|+.+|++++.+++|++++++
T Consensus 161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 99999999999999988788899999999999999999999999999998779999999999888754
No 7
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=1.1e-38 Score=283.24 Aligned_cols=230 Identities=70% Similarity=1.186 Sum_probs=196.7
Q ss_pred cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
++|||+++.+.+++++++++|.|+|+++||+||+.+++||++|++.+.|..+...+|.++|||++|+|+++|+++++|++
T Consensus 1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 80 (369)
T cd08301 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP 80 (369)
T ss_pred CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence 37999999988888999999999999999999999999999999999887655567899999999999999999999999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
||||++.+..+|++|.+|..+..+.|.+.......|....++..++...|...+++...|+|+||+.++...++++|+++
T Consensus 81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~ 160 (369)
T cd08301 81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA 160 (369)
T ss_pred CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence 99999999999999999999999999976432222222112212222223334444456799999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++.+.+++.|+|+++....++++|++|||+|+|++|++++|+++++|+.+|++++++++|++++++
T Consensus 161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 9999999999999999988788899999999999999999999999999998779999999999888754
No 8
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=1.4e-38 Score=283.99 Aligned_cols=233 Identities=61% Similarity=1.096 Sum_probs=193.7
Q ss_pred CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC-CCCCCeeeeeeEEEEEEEeCCCCC
Q 026414 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVT 83 (239)
Q Consensus 5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~Vv~vG~~v~ 83 (239)
++|.+||++++++++++++++|+|.|.|+++||+|||++++||++|++.+.|... ...+|.++|||++|+|+++|++++
T Consensus 6 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~ 85 (381)
T PLN02740 6 GKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVE 85 (381)
T ss_pred ccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCC
Confidence 4678999999999988899999999999999999999999999999999988653 235789999999999999999999
Q ss_pred CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCcccccc--CCcceeeecCCcceeeeEEEecceeE
Q 026414 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVA 161 (239)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 161 (239)
.|++||||++.+..+|++|.+|..+..+.|.+.......+....+|..+++. .+...+++...|+|+||+.+|...++
T Consensus 86 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~ 165 (381)
T PLN02740 86 DLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVV 165 (381)
T ss_pred cCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeE
Confidence 9999999999999999999999999999999765321100000011000000 00111222234699999999999999
Q ss_pred ecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 162 ~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++|+++++++++.+.+++.|+|+++....++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++++++
T Consensus 166 ~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 166 KIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred ECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 9999999999999999999999988788899999999999999999999999999998679999999999988764
No 9
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=1.8e-38 Score=281.94 Aligned_cols=229 Identities=77% Similarity=1.257 Sum_probs=196.5
Q ss_pred cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
.+||++++...+++++++++|.|.|+++||+|||++++||++|++.+.|..+...+|.++|||++|+|+++|+++++|++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~v 80 (368)
T cd08300 1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKP 80 (368)
T ss_pred CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCC
Confidence 37899999988888999999999999999999999999999999999887655578999999999999999999999999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
||+|++.+..+|+.|.+|++++++.|.+.......|.. .+|..++..+|.+.++..+.|+|+||+.++...++++|+++
T Consensus 81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l 159 (368)
T cd08300 81 GDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-PDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEA 159 (368)
T ss_pred CCEEEEcCCCCCCCChhhcCCCcCcCCCcccccccccc-CCCccccccCCcccccccccccceeEEEEchhceEeCCCCC
Confidence 99999999999999999999999999875432112222 22222222233344444456799999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++.+.+++.|+|+++....++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++.+++
T Consensus 160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 9999999999999999988788889999999999999999999999999998779999999999988754
No 10
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=1.2e-37 Score=276.98 Aligned_cols=226 Identities=46% Similarity=0.768 Sum_probs=188.4
Q ss_pred eeEEEEecCC--------CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCC
Q 026414 10 CKAAVAWEPN--------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (239)
Q Consensus 10 ~~a~~~~~~~--------~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~ 81 (239)
|||+++.+.+ +.++++++|.|+|+++||+|||.+++||++|++.+.|..+. .+|.++|||++|+|+++|++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~ 79 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG 79 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence 7899998765 34999999999999999999999999999999999886543 57899999999999999999
Q ss_pred CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeE
Q 026414 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (239)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 161 (239)
+++|++||+|++.+...|++|.+|+.++.+.|.+.......|.. .+|...+..++....+..+.|+|++|+.++...++
T Consensus 80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~ 158 (371)
T cd08281 80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTL-LSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV 158 (371)
T ss_pred CCcCCCCCEEEEccCCCCCCCccccCCCcccccCcccccccccc-ccCcccccccCcccccccCcccceeeEEecccceE
Confidence 99999999999988889999999999999999876543223322 11111111111111111223699999999999999
Q ss_pred ecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 162 ~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++|+++++++|+.+.+++.|||+++....++++|++|||.|+|++|++++|+++++|+++|++++++++|++++++
T Consensus 159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 9999999999999998999999988788889999999999999999999999999999779999999999988764
No 11
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=9.7e-37 Score=270.56 Aligned_cols=227 Identities=65% Similarity=1.101 Sum_probs=194.8
Q ss_pred cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
++|||+++.+.+++++++++|.|.++++||+||++++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++++++
T Consensus 1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08277 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP 79 (365)
T ss_pred CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence 4689999998887799999999999999999999999999999999988654 467899999999999999999999999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
||+|+..+...|++|.+|..+..+.|.+.... ..|.. .++.......|+..+++.+.|+|++|+.++...++++|+++
T Consensus 80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l 157 (365)
T cd08277 80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLM-PDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA 157 (365)
T ss_pred CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccc-cCCccccccCCcccccccccccceeeEEEchhheEECCCCC
Confidence 99999999999999999999999999875432 22332 33322222233333434445799999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++.+.+++.|||+++....++++|++|||+|+|++|++++++++++|+.+|++++++++|++.+++
T Consensus 158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 9999999999999999988788889999999999999999999999999998779999999999888754
No 12
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=1.5e-36 Score=270.64 Aligned_cols=226 Identities=55% Similarity=1.022 Sum_probs=185.4
Q ss_pred cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
..||++++.++++.++++|+|.|.|+++||+|||++++||++|++.+.+.. .+|.++|||++|+|+++|+++++|++
T Consensus 11 ~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~~~ 87 (378)
T PLN02827 11 ITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEFEK 87 (378)
T ss_pred ceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcccCC
Confidence 679999999988779999999999999999999999999999999887642 46789999999999999999999999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
||+|++.+..+|++|.+|.++.++.|.+.... ..|....+...++...|...+++...|+|+||+.+|...++++|+++
T Consensus 88 GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~l 166 (378)
T PLN02827 88 GDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLA 166 (378)
T ss_pred CCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCcccccccCcccccccccccceeeEEechhheEECCCCC
Confidence 99999999999999999999999999864321 11111000000000001111111123699999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++.+.+++.++|+++....++++|++|||+|+|++|++++|+++++|+..|++++++++|++++++
T Consensus 167 ~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 167 PLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 9999999988888999877677889999999999999999999999999998678889989999888754
No 13
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=1.3e-36 Score=266.63 Aligned_cols=205 Identities=29% Similarity=0.459 Sum_probs=182.4
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
|||+++.+++. ++++++|.|+|+++||+||+.+++||++|++.+.+.+.. ..+|.++|||++|+|+++|+++++|++|
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (339)
T cd08239 1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG 79 (339)
T ss_pred CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence 79999998776 999999999999999999999999999999988765432 2357899999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~ 168 (239)
|+|++.+...|++|.+|..++++.|.+... ..|.. .+| +|++|+.+|...++++|++++
T Consensus 80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~-~~G------------------~~ae~~~v~~~~~~~~P~~~~ 138 (339)
T cd08239 80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWN-RDG------------------GHAEYMLVPEKTLIPLPDDLS 138 (339)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccC-CCC------------------cceeEEEechHHeEECCCCCC
Confidence 999999999999999999999999986543 12322 233 999999999999999999999
Q ss_pred chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++.+.+++.|||+++ ....+++|++|||+|+|.+|++++|+++++|+++|++++++++|++++++
T Consensus 139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 999999999999999977 66788999999999999999999999999999559999999999888754
No 14
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=1.8e-36 Score=268.06 Aligned_cols=219 Identities=41% Similarity=0.662 Sum_probs=186.8
Q ss_pred ceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
|||++++++++++++++|+|.|+|+++||+|||.+++||++|++.+.|..+. .+|.++|||++|+|+++|+++++|++|
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVAPG 79 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccCCC
Confidence 6999999999988999999999999999999999999999999998886432 578899999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~ 168 (239)
|+|++.+...|+.|.+|..++.+.|.+..... ......+| .........|+|+||+.+|...++++|++++
T Consensus 80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~-~~~~~~~g--------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~ 150 (358)
T TIGR03451 80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNAT-QKMTLTDG--------TELSPALGIGAFAEKTLVHAGQCTKVDPAAD 150 (358)
T ss_pred CEEEEccCCCCCCChHHhCcCcccCcCccccc-cccccccC--------cccccccccccccceEEEehhheEECCCCCC
Confidence 99999999999999999999999998532110 00000001 0000011235999999999999999999999
Q ss_pred chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++.+.+++.++|+++....++++|++|||+|+|++|++++|+|+++|+++|++++++++|++++++
T Consensus 151 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 151 PAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred hhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 999999999999999887778889999999999999999999999999999679999999999988764
No 15
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=2.7e-36 Score=270.24 Aligned_cols=212 Identities=28% Similarity=0.399 Sum_probs=175.8
Q ss_pred ceeEEEEecCCCCeEEEeecCCCCC-------CCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCC
Q 026414 9 TCKAAVAWEPNKPLVIEDVQVAPPQ-------AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (239)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~-------~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~ 81 (239)
-|||+++.++++ ++++|+|.|+|+ +|||||||+++|||++|++.+.|..+ ..+|.++|||++|+|+++|++
T Consensus 2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~ 79 (393)
T TIGR02819 2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRD 79 (393)
T ss_pred CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCc
Confidence 489999999887 999999999874 68999999999999999999988653 257899999999999999999
Q ss_pred CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCC---CCceeccCCccccccCCcceeeecCCcceeeeEEEecc
Q 026414 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT---GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (239)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 158 (239)
+++|++||||++.+...|++|.+|++++.+.|.+..... ..|+... | ...|+|+||+.+|..
T Consensus 80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~-~--------------~~~G~~aey~~v~~~ 144 (393)
T TIGR02819 80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDM-G--------------GWVGGQSEYVMVPYA 144 (393)
T ss_pred cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceeccccc-C--------------CCCCceEEEEEechh
Confidence 999999999999999999999999999999999643110 0111000 0 012499999999963
Q ss_pred --eeEecCCCCCc----hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414 159 --SVAKIDPQAPL----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (239)
Q Consensus 159 --~~~~~p~~~~~----~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~ 232 (239)
.++++|++++. ..++.+..++.++|+++ .+.++++|++|||.|+|++|++++|+|+++|++.+++++.+++|+
T Consensus 145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~ 223 (393)
T TIGR02819 145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL 223 (393)
T ss_pred hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 79999998653 34566777888999976 567899999999998999999999999999996677778888898
Q ss_pred hhhhhc
Q 026414 233 DREFWS 238 (239)
Q Consensus 233 ~~~~~~ 238 (239)
++++++
T Consensus 224 ~~a~~~ 229 (393)
T TIGR02819 224 AQARSF 229 (393)
T ss_pred HHHHHc
Confidence 887653
No 16
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=6.6e-36 Score=264.97 Aligned_cols=209 Identities=27% Similarity=0.356 Sum_probs=178.5
Q ss_pred CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (239)
Q Consensus 5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 84 (239)
..|++++++.+.+..+.+++.+++.|.|+++||+|||.+++||++|++.+.|..+...+|.++|||++|+|+++|+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~ 87 (360)
T PLN02586 8 EHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKK 87 (360)
T ss_pred hchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCc
Confidence 46788888888887777999999999999999999999999999999999876544467899999999999999999999
Q ss_pred CCCCCEEeecCc-cCCCCCccccCCCCCCCCCcCCCCC----CceeccCCccccccCCcceeeecCCcceeeeEEEecce
Q 026414 85 VQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATG----AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS 159 (239)
Q Consensus 85 ~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~----~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 159 (239)
|++||+|++.+. .+|++|.+|+.+..+.|++...... .|.. .+ |+|+||+.+|.+.
T Consensus 88 ~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~~------------------G~~aey~~v~~~~ 148 (360)
T PLN02586 88 FKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTK-NY------------------GGYSDMIVVDQHF 148 (360)
T ss_pred cCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCc-CC------------------CccceEEEEchHH
Confidence 999999986553 5799999999999999987542100 0111 23 3999999999999
Q ss_pred eEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 160 ~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
++++|+++++++++.+.+++.|+|+++......++|++|||.|+|++|++++|+|+++|+ ++++++.++++..
T Consensus 149 ~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~ 221 (360)
T PLN02586 149 VLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKED 221 (360)
T ss_pred eeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhh
Confidence 999999999999999999999999987666667899999999999999999999999999 7777776665543
No 17
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=4.9e-36 Score=264.69 Aligned_cols=209 Identities=30% Similarity=0.393 Sum_probs=172.8
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCe-eeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC-ILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~-~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
|++++++.++...++++.+.|.++++||+|||.++|||++|++.+.+..+....|. ++|||++|+|+++| .++.+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G 79 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG 79 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence 67778877776455788877778999999999999999999999999876666666 99999999999999 77789999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCcee-ccCCccccccCCcceeeecCCcceeeeEEEecceeE-ecCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM-MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA-KIDPQ 166 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~p~~ 166 (239)
|||++.+..+|++|.+|+.+..+.|.+.+........ ..+| +|+||+.+|.++++ ++|++
T Consensus 80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G------------------~~aEyv~vp~~~~~~~~pd~ 141 (350)
T COG1063 80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG------------------GFAEYVRVPADFNLAKLPDG 141 (350)
T ss_pred CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC------------------ceEEEEEeccccCeecCCCC
Confidence 9999999999999999999999999954421111111 0344 99999999965554 55788
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~ 238 (239)
+ ..+++++.-++.++|++.......+++++|+|+|+|++|++++++++.+|+.+|++++.+++|+++++++
T Consensus 142 ~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 142 I-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred C-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence 7 4566666668999988644555566666999999999999999999999999999999999999999873
No 18
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-35 Score=260.51 Aligned_cols=207 Identities=20% Similarity=0.323 Sum_probs=174.3
Q ss_pred cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhc-CCCC--CCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTE 84 (239)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~ 84 (239)
.++|++++.++++ ++++++|.| +.++||||||++++||++|++++. +... ...+|.++|||++|+|+++ ++++
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~ 78 (343)
T PRK09880 3 VKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG 78 (343)
T ss_pred ccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence 5789999999988 999999997 689999999999999999999875 3322 2357899999999999999 6889
Q ss_pred CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (239)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 164 (239)
|++||+|++.+..+|++|.+|..++.+.|.+... .|.... .....|+|+||++++...++++|
T Consensus 79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~--------------~~~~~G~~aey~~v~~~~~~~~P 141 (343)
T PRK09880 79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMY--------------FPHVDGGFTRYKVVDTAQCIPYP 141 (343)
T ss_pred CCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccc--------------cCCCCCceeeeEEechHHeEECC
Confidence 9999999999999999999999999999987543 221100 00012499999999999999999
Q ss_pred CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++++++ +..+++++|+++ ......+|++|||+|+|++|++++|+++++|+++|++++++++|++++++
T Consensus 142 ~~l~~~~aa-~~~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 142 EKADEKVMA-FAEPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCHHHHH-hhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 999987665 445778899977 45566689999999999999999999999999789999999999998875
No 19
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=100.00 E-value=6e-35 Score=259.92 Aligned_cols=229 Identities=59% Similarity=0.981 Sum_probs=197.8
Q ss_pred ccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
-.+||++++...+++++++++|.|.+.++||+||++++++|++|.+.+.|... ..+|.++|||++|+|+++|++++.++
T Consensus 5 ~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~ 83 (373)
T cd08299 5 VIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTVK 83 (373)
T ss_pred cceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccCC
Confidence 35699999998887899999999999999999999999999999999988753 35788999999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|++.+..+|++|.+|..++.+.|+........|.. .++..+...+|...+++.+.|+|++|+.++.+.++++|++
T Consensus 84 ~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~ 162 (373)
T cd08299 84 PGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM-QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAA 162 (373)
T ss_pred CCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccc-cCCccccccCCcccccccCCCcccceEEecccceeeCCCC
Confidence 999999998999999999999999999875432212332 3333344445555555555689999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++++.+.+++.++|+++....++++|++|||+|+|++|++++++++.+|+.+|++++++++|++.+++
T Consensus 163 l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~ 233 (373)
T cd08299 163 APLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE 233 (373)
T ss_pred CChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 99999999999999999988788899999999999889999999999999998779999999998887753
No 20
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=9e-35 Score=254.74 Aligned_cols=201 Identities=24% Similarity=0.347 Sum_probs=176.2
Q ss_pred EEEecCC----CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 13 AVAWEPN----KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 13 ~~~~~~~----~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
+.+...+ ..++++++|.|.|+++||+|||++++||++|.+.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 81 (329)
T TIGR02822 2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG 81 (329)
T ss_pred eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence 4454444 248999999999999999999999999999999998876544457899999999999999999999999
Q ss_pred CEEeecCc-cCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
|+|++.+. .+|+.|.+|..++.+.|.+... .|.. .+| +|++|+.+|...++++|+++
T Consensus 82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~lP~~~ 139 (329)
T TIGR02822 82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWD-TDG------------------GYAEYTTVPAAFAYRLPTGY 139 (329)
T ss_pred CEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcc-cCC------------------cceeEEEeccccEEECCCCC
Confidence 99987653 4799999999999999987543 2322 334 99999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++.+.+++.|||+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++++
T Consensus 140 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 140 DDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA 207 (329)
T ss_pred CHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence 9999999999999999977 56889999999999999999999999999999 79999999999998865
No 21
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=100.00 E-value=1.7e-34 Score=255.08 Aligned_cols=205 Identities=26% Similarity=0.323 Sum_probs=166.9
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC---CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
||++++...+.+++++++|.|+|+++||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|++ ++|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 688888755444999999999999999999999999999999999886532 246889999999999999999 9999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+..+...|++|.+|..++.+.|..... ...|....+ |+|+||+.++...++++|++
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~-~~~g~~~~~------------------G~~aey~~~~~~~~~~~P~~ 140 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEY-TERGIKGLH------------------GFMREYFVDDPEYLVKVPPS 140 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCcce-eccCcCCCC------------------ccceeEEEeccccEEECCCC
Confidence 99999999988999999999999999986432 111221122 39999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhh------hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC---ChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVW------NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~------~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~---~~~~~~~~~~ 237 (239)
++ + ++.+..++.+++.++. .....++|++|||+|+|++|++++|+|+++|+ +|+++++ +++|++++++
T Consensus 141 ~~-~-~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 141 LA-D-VGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CC-c-ceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence 98 3 3444445555544332 22236789999999999999999999999999 7998887 5788887764
No 22
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=4.2e-34 Score=253.07 Aligned_cols=215 Identities=25% Similarity=0.280 Sum_probs=181.3
Q ss_pred CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (239)
Q Consensus 5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 84 (239)
.....+++++++.++.++++++++.|+|+++||+|||++++||++|++.+.+.+....+|.++|||++|+|+++|+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~ 84 (357)
T PLN02514 5 EAEKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSK 84 (357)
T ss_pred CCCceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCccc
Confidence 34456999999999999999999999999999999999999999999999887544457889999999999999999999
Q ss_pred CCCCCEEeecCcc-CCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414 85 VQPGDHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (239)
Q Consensus 85 ~~~Gd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (239)
|++||+|++.+.. .|++|.+|..++.+.|.+.......++ ..| ....|+|++|+.+|...++++
T Consensus 85 ~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~--~~g-------------~~~~G~~aey~~v~~~~~~~i 149 (357)
T PLN02514 85 FTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY--TDG-------------KPTQGGFASAMVVDQKFVVKI 149 (357)
T ss_pred ccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccc--cCC-------------ccCCCccccEEEEchHHeEEC
Confidence 9999999865543 699999999999999987532110000 001 112359999999999999999
Q ss_pred CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
|+++++++++.+++++.|||+++......++|++++|+|+|++|++++|+|+++|+ +++++++++++++.+
T Consensus 150 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~ 220 (357)
T PLN02514 150 PEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEA 220 (357)
T ss_pred CCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 99999999999999999999987665666899999999889999999999999999 788888777766544
No 23
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=100.00 E-value=1.2e-33 Score=250.67 Aligned_cols=226 Identities=60% Similarity=1.050 Sum_probs=203.5
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
+||+++.+.++++++++++.|.+++++|+||+.++++|++|++...+... ..+|.++|||++|+|+++|++++.+++||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd 79 (365)
T cd05279 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD 79 (365)
T ss_pred CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence 57899998887799999999999999999999999999999998887654 35678999999999999999999999999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
+|+..+..+|++|.+|..++.+.|.........|.. .+|..++.-+|+..+++.+.|+|++|+.++...++++|+++++
T Consensus 80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~ 158 (365)
T cd05279 80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL 158 (365)
T ss_pred EEEEcCCCCCCCChhhcCCCcccCCCcccccccccc-cCCcceeeccCCccccccccccccceEEecCCceEECCCCCCH
Confidence 999999899999999999999999987766566655 6677777778888888888899999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++.+.+++.++|+++....++++|++|||+|+|.+|++++++++++|+..+++++++++|.+.+.+
T Consensus 159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~ 226 (365)
T cd05279 159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ 226 (365)
T ss_pred HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 99999999999999988888899999999999889999999999999999668888888888887643
No 24
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=1e-33 Score=252.22 Aligned_cols=205 Identities=28% Similarity=0.329 Sum_probs=170.2
Q ss_pred EEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEE
Q 026414 12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV 91 (239)
Q Consensus 12 a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V 91 (239)
+++..+.++++++.+++.|+|+++||+|||.+++||++|++.+.|.+....+|.++|||++|+|+++|+++++|++||+|
T Consensus 9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV 88 (375)
T PLN02178 9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV 88 (375)
T ss_pred EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence 44455555569999999999999999999999999999999998865434568899999999999999999999999999
Q ss_pred eecCcc-CCCCCccccCCCCCCCCCcCCCCC----CceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 92 IPCYQA-ECRECKFCKSGKTNLCGKVRGATG----AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 92 ~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~----~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
++.+.. +|++|.+|++++.+.|++...... .|.. .+ |+|+||+.+|.+.++++|++
T Consensus 89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~~------------------G~~aey~~v~~~~~~~lP~~ 149 (375)
T PLN02178 89 GVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTR-NQ------------------GGYSDVIVVDHRFVLSIPDG 149 (375)
T ss_pred EEcCccCCCCCChhHhCcchhcCCCccccccccccCCCc-CC------------------CccccEEEEchHHeEECCCC
Confidence 876654 699999999999999997542110 0111 12 49999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh-Hhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK-FDREF 236 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~-~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~-~~~~~ 236 (239)
+++++++.+.++..|+|+++..... .++|++|+|.|+|++|++++|+|+++|+ +|++++.++++ .++++
T Consensus 150 ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~ 220 (375)
T PLN02178 150 LPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAID 220 (375)
T ss_pred CCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHH
Confidence 9999999999999999987744432 4689999999999999999999999999 78888776554 55553
No 25
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=9.5e-34 Score=247.65 Aligned_cols=181 Identities=29% Similarity=0.365 Sum_probs=160.8
Q ss_pred eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCC-CCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
||+++++..+.+ ++++|+|.|.|++|||||||++++||+.|..++.|. .+..++|.++|.|++|+|+++|++++.|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 788999887765 889999999999999999999999999999999997 34446899999999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+.... .| . .|+|+||..+|+..++++|++
T Consensus 81 ~GdrV~~~~~-~~---------------------------~------------------~G~~AEy~~v~a~~~~~~P~~ 114 (326)
T COG0604 81 VGDRVAALGG-VG---------------------------R------------------DGGYAEYVVVPADWLVPLPDG 114 (326)
T ss_pred CCCEEEEccC-CC---------------------------C------------------CCcceeEEEecHHHceeCCCC
Confidence 9999986530 00 1 239999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++||++++++.|||+++....++++|++|||+|+ |++|.+++|+||++|+ .++++.+++++.+++++
T Consensus 115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~ 185 (326)
T COG0604 115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE 185 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh
Confidence 9999999999999999999988899999999999986 9999999999999998 67777777777666654
No 26
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=2.9e-33 Score=246.88 Aligned_cols=200 Identities=32% Similarity=0.483 Sum_probs=175.0
Q ss_pred EEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCC-CCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEE
Q 026414 13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV 91 (239)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V 91 (239)
++++++++++++++.|.|.|+++||+|||+++++|++|++.+.+. .+...+|.++|||++|+|+++|++++.+ +||+|
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV 80 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV 80 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence 567777777999999999999999999999999999999887443 3233678999999999999999999877 99999
Q ss_pred eecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC------
Q 026414 92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------ 165 (239)
Q Consensus 92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~------ 165 (239)
++.+..+|++|.+|..++.+.|..... .|.. .+ |+|++|+.+|...++++|+
T Consensus 81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~ae~~~v~~~~~~~ip~~~~~~~ 138 (349)
T TIGR03201 81 IVPAVIPCGECELCKTGRGTICRAQKM---PGND-MQ------------------GGFASHIVVPAKGLCVVDEARLAAA 138 (349)
T ss_pred EECCCCCCCCChhhhCcCcccCCCCCc---cCcC-CC------------------CcccceEEechHHeEECCccccccc
Confidence 999999999999999999999986432 2221 23 3999999999999999998
Q ss_pred CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++++.+.+++.++|+++ ....+++|++|||+|+|++|++++++|+++|+ +|++++++++|++++++
T Consensus 139 ~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 139 GLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 889989998888999999976 45789999999999999999999999999999 79999999999888754
No 27
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=100.00 E-value=4.8e-33 Score=244.88 Aligned_cols=199 Identities=17% Similarity=0.177 Sum_probs=163.4
Q ss_pred ceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC----CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE----GLFPCILGHEAAGIVESVGEGVTE 84 (239)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----~~~p~~~G~e~vG~Vv~vG~~v~~ 84 (239)
..++++++++++ ++++|.|.|+ +++||||||+++|||++|++.+.|.+.. ..+|.++|||++|+|+++|.+ +
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~ 77 (341)
T cd08237 2 INQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--T 77 (341)
T ss_pred cccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--c
Confidence 457889999987 9999999995 9999999999999999999999987532 257999999999999998864 7
Q ss_pred CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (239)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 164 (239)
|++||||.+.+..+|+ |..| ...+.|.+... .|.. .+| +|+||+.+|.+.++++|
T Consensus 78 ~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~vP 132 (341)
T cd08237 78 YKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSG-YDG------------------FMQDYVFLPPDRLVKLP 132 (341)
T ss_pred cCCCCEEEECCCCCch-hccc--chhccCCCcce---eEec-CCC------------------ceEEEEEEchHHeEECC
Confidence 9999999998887777 4355 34566764322 1221 234 99999999999999999
Q ss_pred CCCCchhhhhcccccchhhhhhhh--hcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhhh
Q 026414 165 PQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++++|+.+. +++++++++.. ...+++|++|||+|+|++|++++|+++. +|..+|++++++++|++++++
T Consensus 133 ~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 133 DNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 999998877554 77888887643 3456899999999999999999999986 666589999999999988754
No 28
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-32 Score=242.05 Aligned_cols=202 Identities=28% Similarity=0.426 Sum_probs=172.5
Q ss_pred eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
||+++++++++ ++++|+|.|.| .++||+|||+++++|++|+..+..... ..+|.++|||++|+|+++|+++++|++|
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vG 78 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-HYYPITLGHEFSGYVEAVGSGVDDLHPG 78 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-CCCCcccccceEEEEEEeCCCCCCCCCC
Confidence 78999998876 99999999997 699999999999999999875432211 1357899999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~ 168 (239)
|+|++.+..+|+.|++|..+..+.|.+... .|.. .+ |+|++|+.++...++++|++++
T Consensus 79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~lP~~~s 136 (347)
T PRK10309 79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSR-RD------------------GGNAEYIVVKRKNLFALPTDMP 136 (347)
T ss_pred CEEEECCCcCCCCCcchhCcCcccCCCcce---eccC-CC------------------CccceeEEeehHHeEECcCCCC
Confidence 999999999999999999999999986432 2221 23 4999999999999999999999
Q ss_pred chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++.+. .+.++++++ ....+++|++|||+|+|++|++++|+|+++|++.|++++++++|++++++
T Consensus 137 ~~~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 203 (347)
T PRK10309 137 IEDGAFIE-PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS 203 (347)
T ss_pred HHHhhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 99988764 455577754 66788999999999999999999999999999668999999999888754
No 29
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=100.00 E-value=4.7e-32 Score=239.78 Aligned_cols=212 Identities=29% Similarity=0.454 Sum_probs=182.3
Q ss_pred eEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC------
Q 026414 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE------ 84 (239)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~------ 84 (239)
|++++.++++.+++++++.|.|+++||+|||.++++|++|+....|.++...+|.++|||++|+|+++|+++++
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~ 81 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP 81 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence 78999998877999999999999999999999999999999998887643467889999999999999999986
Q ss_pred CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc-eeEec
Q 026414 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV-SVAKI 163 (239)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~ 163 (239)
|++||+|+..+...|+.|.+|..++.+.|.+...+ |.....+ .....|+|++|+.++.+ .++++
T Consensus 82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~---~~~~~~~------------~~~~~g~~a~~~~v~~~~~~~~l 146 (361)
T cd08231 82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY---GHEASCD------------DPHLSGGYAEHIYLPPGTAIVRV 146 (361)
T ss_pred cCCCCEEEEcccCCCCCChhHhCcCccccccchhc---ccccccc------------CCCCCcccceEEEecCCCceEEC
Confidence 99999999999999999999999999999876532 2211100 00123599999999986 79999
Q ss_pred CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
|++++..+++.+++++.|||+++......++|++|||+|+|.+|++++++|+.+|+++|+++++++++.+++++
T Consensus 147 P~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 220 (361)
T cd08231 147 PDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE 220 (361)
T ss_pred CCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 99999999998889999999988666666799999999989999999999999998789999999988877643
No 30
>PRK10083 putative oxidoreductase; Provisional
Probab=100.00 E-value=6.8e-32 Score=236.49 Aligned_cols=203 Identities=28% Similarity=0.460 Sum_probs=178.0
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
|||+++++++. ++++++|.|+|+++||+||+.+++||++|+..+.+..+...+|.++|||++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd 79 (339)
T PRK10083 1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE 79 (339)
T ss_pred CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence 68999998886 99999999999999999999999999999999888765446789999999999999999999999999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
+|++.+...|+.|.+|..++++.|..... .+.. .+ |+|++|+.++...++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~ip~~~~~ 137 (339)
T PRK10083 80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVH-RD------------------GGFSEYAVVPAKNAHRIPDAIAD 137 (339)
T ss_pred EEEEccccCCCCCccccCcCcccCCCCce---EEEc-cC------------------CcceeeEEechHHeEECcCCCCH
Confidence 99999999999999999999999975432 1221 22 49999999999999999999998
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++ +..++.++++ +....++++|++|+|+|+|.+|+++++++++ +|+..+++++++++|++++++
T Consensus 138 ~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 138 QYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred HHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 8876 4457778885 5577889999999999999999999999997 699778889999999888754
No 31
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=100.00 E-value=8e-32 Score=239.09 Aligned_cols=227 Identities=41% Similarity=0.718 Sum_probs=186.9
Q ss_pred cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
++|||+++.++++++++++.+.|.++++||+||+.++++|++|+....+.++ ..+|.++|||++|+|+++|+++.++++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP 79 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence 4799999999777799999999999999999999999999999999888654 346789999999999999999999999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccc-cCC-cceeeecCCcceeeeEEEecceeEecCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS-ING-KPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~-~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~p~ 165 (239)
||+|++.+. .|+.|.+|..++.+.|.+.......|.. .+|..-.. .+| ++..+++..|+|++|+.++...++++|+
T Consensus 80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~ 157 (365)
T cd08278 80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRR-PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK 157 (365)
T ss_pred CCEEEEccc-CCCCChHHhCCCcccccCcccccccccc-cCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence 999998764 8999999999999999865432111111 00100000 000 0001123456999999999999999999
Q ss_pred CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++++.+++++.||+.++.....++++++|||+|+|.+|++++++++++|++.+++++++++|.+++++
T Consensus 158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 999999999999999999988888889999999999889999999999999999779999999998887654
No 32
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=100.00 E-value=1.2e-31 Score=234.76 Aligned_cols=204 Identities=30% Similarity=0.494 Sum_probs=180.2
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
|||+++++++++++++++|.|+++++||+||+.++++|++|.....|..+...+|.++|||++|+|+++|++++++++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd 80 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD 80 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence 79999999966699999999999999999999999999999999888654345688999999999999999999999999
Q ss_pred EEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414 90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (239)
Q Consensus 90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~ 168 (239)
+|++.+ ...|++|.+|..++.+.|.+... .|.. .+ |+|++|+.++...++++|++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~-~~------------------g~~a~~~~v~~~~~~~lp~~~~ 138 (333)
T cd08296 81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVT-RD------------------GGYAEYMLAPAEALARIPDDLD 138 (333)
T ss_pred EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcc-cC------------------CcceeEEEEchhheEeCCCCCC
Confidence 998754 56899999999999999997653 2322 22 3899999999999999999999
Q ss_pred chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+.+++.+.+++.|+|+++. ...++++++|||+|+|.+|++++++|+++|+ +++++++++++++.+++
T Consensus 139 ~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~ 205 (333)
T cd08296 139 AAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK 205 (333)
T ss_pred HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence 9999999999999999774 4589999999999999999999999999999 89999999888887753
No 33
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=100.00 E-value=1.4e-31 Score=235.87 Aligned_cols=207 Identities=27% Similarity=0.362 Sum_probs=180.7
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
|||+++++++. +++++++.|.++++||+|||+++++|++|++.+.+......+|.++|||++|+|+++|++++++++||
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd 79 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD 79 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence 78999999886 99999999999999999999999999999998877654446688999999999999999999999999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCCC
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA 167 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~~ 167 (239)
+|+..+..+|+.|..|..++.+.|.+...+...+ ....|+|++|+.++.. .++++|+++
T Consensus 80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~-------------------~~~~g~~~~y~~v~~~~~~~~~lP~~~ 140 (351)
T cd08285 80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFS-------------------NFKDGVFAEYFHVNDADANLAPLPDGL 140 (351)
T ss_pred EEEEcCcCCCCCCHHHHCcCcccCcCCCCCcccc-------------------CCCCcceeEEEEcchhhCceEECCCCC
Confidence 9999888899999999999999998643110011 1113499999999974 899999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++.++..+.|+++++ ....++++++|||+|+|.+|++++++++.+|+..+++++++++|.+++++
T Consensus 141 ~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 141 TDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CHHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 9999999988999999974 77889999999999889999999999999999779999999998887654
No 34
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=100.00 E-value=1.5e-31 Score=235.81 Aligned_cols=204 Identities=31% Similarity=0.488 Sum_probs=175.9
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC---C--------CCCCCeeeeeeEEEEEEEe
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---P--------EGLFPCILGHEAAGIVESV 78 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~--------~~~~p~~~G~e~vG~Vv~v 78 (239)
|||+++.++++ ++++++|.|+|.++||+||+.++++|++|+....+.. + ...+|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 78999998876 9999999999999999999999999999987665321 1 0136889999999999999
Q ss_pred CCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc
Q 026414 79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (239)
Q Consensus 79 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 158 (239)
|+++++|++||+|...+...|++|.+|.++..+.|..... .|....+ |+|++|+.++..
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------g~~a~~~~~~~~ 138 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGG------------------GGFAEYVVVPAY 138 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCC------------------CceeeEEEechH
Confidence 9999999999999999999999999999999999985431 2211012 499999999999
Q ss_pred eeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 159 ~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.++++|+++++++++.+ .+..|||+++ ...++++|++|||+|+|.+|++++|+++.+|+++|+++++++++.+++.+
T Consensus 139 ~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~ 215 (351)
T cd08233 139 HVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE 215 (351)
T ss_pred HeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 99999999999888776 5778999977 78889999999999999999999999999998789999999988887643
No 35
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=100.00 E-value=2.6e-31 Score=237.54 Aligned_cols=224 Identities=30% Similarity=0.394 Sum_probs=184.7
Q ss_pred eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
|||++++++++ ++++++|.|.| .+++|+||+.+++||++|+..+.|.++..++|.++|||++|+|+++|++++++++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 79 (386)
T cd08283 1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG 79 (386)
T ss_pred CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence 78999998866 99999999998 49999999999999999999998877655678899999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcc-eeeecCCcceeeeEEEecc--eeEecCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP-IYHFMGTSTFSQYTVVHDV--SVAKIDP 165 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~--~~~~~p~ 165 (239)
|+|+..+...|++|++|..++.+.|++......+-. ..|....+..|-. .. ....|+|++|+.++.. .++++|+
T Consensus 80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~~lp~ 156 (386)
T cd08283 80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAK--LYGHAGAGIFGYSHLT-GGYAGGQAEYVRVPFADVGPFKIPD 156 (386)
T ss_pred CEEEEcCcCCCCCChhhcCCCcccCCCccccccccc--cccccccccccccccc-CCCCCeeEEEEEcccccCeEEECCC
Confidence 999999888999999999999999987543210000 0000000000000 00 0123599999999987 8999999
Q ss_pred CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~ 238 (239)
++++++++.++..++|||+++ ...++++|++|||+|+|.+|.+++++|++.|+.+++++++++++.+++++.
T Consensus 157 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 157 DLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 999999999999999999987 788899999999998899999999999999985699999999998887653
No 36
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.97 E-value=1.4e-30 Score=227.62 Aligned_cols=203 Identities=32% Similarity=0.471 Sum_probs=181.8
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
|||+++..+++++++++.|.|.+++||++||++++++|++|+....+..+...+|.++|||++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 80 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD 80 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence 78999999998899999999999999999999999999999998888665556778999999999999999998899999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
+|++.+...|++|.+|..+..+.|..... .|.. .+ |+|++|+.++...++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~~ 138 (334)
T PRK13771 81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEE-LD------------------GFFAEYAKVKVTSLVKVPPNVSD 138 (334)
T ss_pred EEEECCCCCCcCChhhcCCCcccCccccc---cccc-cC------------------ceeeeeeecchhceEECCCCCCH
Confidence 99999889999999999999999987543 2221 23 39999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
.+++.+.+++.++|+++... .+++++++||+|+ |.+|++++++++.+|+ +++++++++++.+.++
T Consensus 139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~ 204 (334)
T PRK13771 139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVS 204 (334)
T ss_pred HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 99999999999999987555 8899999999988 9999999999999998 8898988888877764
No 37
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.97 E-value=1.3e-30 Score=229.60 Aligned_cols=205 Identities=26% Similarity=0.430 Sum_probs=177.4
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---------CCCCCeeeeeeEEEEEEEeCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---------EGLFPCILGHEAAGIVESVGE 80 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---------~~~~p~~~G~e~vG~Vv~vG~ 80 (239)
|||++++++++ +++++.+.|++.+++|+||+++++||+.|+....|... ..++|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 78999998887 99999999999999999999999999999998877531 114677899999999999999
Q ss_pred CCC--CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc
Q 026414 81 GVT--EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (239)
Q Consensus 81 ~v~--~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 158 (239)
+++ .|++||+|+..+..+|++|.+|..+..+.|..... +|+.. ...|+|++|+.++.+
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-----------------~~~g~~~~~~~~~~~ 139 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQN-----------------NVNGGMAEYMRFPKE 139 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeecc-----------------CCCCcceeeEEcccc
Confidence 998 89999999999999999999999999999986432 23210 012499999999987
Q ss_pred -eeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 159 -SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 159 -~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.++++|+++++++++.+ .++.|+|.++ ...+++++++|||.|+|.+|++++++|+++|+..+++++++++|.+++.+
T Consensus 140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 217 (350)
T cd08256 140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK 217 (350)
T ss_pred cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH
Confidence 67899999999999988 7889999977 78889999999997779999999999999998778899999888876553
No 38
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.97 E-value=2.4e-30 Score=229.32 Aligned_cols=224 Identities=47% Similarity=0.830 Sum_probs=185.4
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
|||+++...+.+++++++|.|+++++||+||+.++++|+.|...+.+..+ ..+|.++|+|++|+|+++|+++..+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD 79 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence 79999999888899999999999999999999999999999998887654 35678999999999999999999999999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
+|+..+..+|++|.+|.+++.+.|.+.... ..|.. +++.+++.--|...+.....|+|++|+.++.+.++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 157 (363)
T cd08279 80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGI-LGGQL-PDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL 157 (363)
T ss_pred EEEECCCCCCCCChhhcCCCcccCcccccc-ccccc-CCCcccccccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence 999999999999999999999999865310 00000 0000000000111111233569999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++++.+.+++.+||.++.....++++++|||+|+|.+|.+++++++.+|+.+|+++++++++.+.+.
T Consensus 158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~ 224 (363)
T cd08279 158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR 224 (363)
T ss_pred HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 9999999999999998888888999999999988999999999999999955999999888887764
No 39
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.97 E-value=2.5e-30 Score=226.97 Aligned_cols=207 Identities=31% Similarity=0.474 Sum_probs=180.7
Q ss_pred eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
||++++.++++ +++.++|.|.| +++||+||+.++++|++|+..+.+..+..++|.++|+|++|+|+++|++++++++|
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG 79 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence 68999998877 99999999999 99999999999999999999988876555678899999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~ 166 (239)
|+|+..+...|+.|.+|..+....|.+...+...| ....|+|++|+.++.. .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~g~~~~~~~v~~~~~~~~~lP~~ 140 (347)
T cd05278 80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLG-------------------NRIDGGQAEYVRVPYADMNLAKIPDG 140 (347)
T ss_pred CEEEecCCCCCCCChhHhCcCcccCcCCCcccccc-------------------cCCCCeeeEEEEecchhCeEEECCCC
Confidence 99999999999999999999999998644221111 1123499999999987 89999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++++.+++++.|||+++ ...+++++++|||.|+|.+|.+++++|+.+|...++++++++++.+++++
T Consensus 141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 99999999999999999976 77889999999998889999999999999996578888888888776543
No 40
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.97 E-value=1.6e-30 Score=232.66 Aligned_cols=210 Identities=21% Similarity=0.205 Sum_probs=178.5
Q ss_pred cccceeEEEEec--CC---CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC----------CCCCCeeeeee
Q 026414 6 QVITCKAAVAWE--PN---KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFPCILGHE 70 (239)
Q Consensus 6 ~~~~~~a~~~~~--~~---~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p~~~G~e 70 (239)
.|.+|+|++++. .+ +.++++++|.|.++++||+||+.+++||++|++.+.+... ....+.++|||
T Consensus 9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e 88 (393)
T cd08246 9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD 88 (393)
T ss_pred CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence 678899998863 22 2388999999999999999999999999999988766411 01123588999
Q ss_pred EEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCccee
Q 026414 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150 (239)
Q Consensus 71 ~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~ 150 (239)
++|+|+++|++++++++||+|++.+...|++|..|..+..+.|..... +|+...+ |+|+
T Consensus 89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~------------------g~~a 147 (393)
T cd08246 89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNY------------------GSFA 147 (393)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCC------------------Ccce
Confidence 999999999999999999999999999999999999999999986543 3332122 3999
Q ss_pred eeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhh--cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 151 ~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~--~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
+|+.++...++++|+++++++++.+.+++.|||+++... .+++++++|||+|+ |.+|++++++++++|+ +++++++
T Consensus 148 ~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~ 226 (393)
T cd08246 148 QFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVS 226 (393)
T ss_pred eEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999999999999999999999999987544 67899999999997 9999999999999999 7788888
Q ss_pred ChhhHhhhhh
Q 026414 228 DPKKFDREFW 237 (239)
Q Consensus 228 ~~~~~~~~~~ 237 (239)
+++|.+.+++
T Consensus 227 s~~~~~~~~~ 236 (393)
T cd08246 227 SEEKAEYCRA 236 (393)
T ss_pred CHHHHHHHHH
Confidence 8888887754
No 41
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.97 E-value=2.5e-30 Score=226.49 Aligned_cols=206 Identities=31% Similarity=0.467 Sum_probs=181.9
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
||+++++++++++++.+.+.|.+++++|+||+.++++|++|+....+.+. ...+|.++|+|++|+|+++|+++.+|+
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 68999998877799999999999999999999999999999998877653 235678999999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+..+...|+.|..|..+..++|.+.... |+. .+| +|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~g------------------~~~~~~~v~~~~~~~~P~~ 138 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARFP---GIG-TDG------------------GFAEYLLVPSRRLVKLPRG 138 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCccc---Ccc-CCC------------------cceeeEEecHHHeEECCCC
Confidence 999999999889999999999999999987652 332 334 9999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++++.+++.+.|||+++... ..+.++++|||+|+|.+|++++++++.+|..+|+++.+++++.+.+++
T Consensus 139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~ 210 (340)
T cd05284 139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER 210 (340)
T ss_pred CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 99999999999999999987665 468889999999998899999999999993388889888888777643
No 42
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.97 E-value=6.1e-30 Score=222.54 Aligned_cols=203 Identities=40% Similarity=0.646 Sum_probs=180.5
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
||++++..+++++.+.++|.|.+.+++|+|+++++++|++|+....+..+....|.++|||++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd 80 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD 80 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence 68999987666699999999999999999999999999999999888765556788999999999999999999999999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
+|+...+..|++|.+|..++.+.|.+.. ..|.. .+ |+|++|+.++...++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~------------------g~~~~~~~v~~~~~~~ip~~~~~ 138 (332)
T cd08259 81 RVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEE-VD------------------GGFAEYVKVPERSLVKLPDNVSD 138 (332)
T ss_pred EEEECCCCCCcCChhhhCCCcccCCCcc---ccccc-cC------------------CeeeeEEEechhheEECCCCCCH
Confidence 9999999999999999999999998752 23322 23 39999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++++.+++++.+||+++.. ..+.+++++||+|+ |.+|++++++++..|+ .++++.+++++.+.+.
T Consensus 139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 204 (332)
T cd08259 139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILK 204 (332)
T ss_pred HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHH
Confidence 9999999999999998765 88999999999987 9999999999999998 8888888887776654
No 43
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.97 E-value=6e-30 Score=227.85 Aligned_cols=213 Identities=31% Similarity=0.435 Sum_probs=178.2
Q ss_pred eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
||++++.+++. ++++++|.|.+ +++||+||++++++|++|++...|..+ ..+|.++|||++|+|+++|++++.+++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G 78 (375)
T cd08282 1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG 78 (375)
T ss_pred CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence 68899988875 99999999996 899999999999999999999988655 3468899999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~ 166 (239)
|+|+..+..+|+.|..|..++...|.+.......+.. | . .-.....|+|++|+.+|.. .++++|++
T Consensus 79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~---~--------~-~~~~~~~g~~a~y~~v~~~~~~~~~lP~~ 146 (375)
T cd08282 79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAY---G--------Y-VDMGPYGGGQAEYLRVPYADFNLLKLPDR 146 (375)
T ss_pred CEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccc---c--------c-cccCCCCCeeeeEEEeecccCcEEECCCC
Confidence 9999999999999999999999999864322100000 0 0 0000012489999999975 89999999
Q ss_pred CCch---hhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLD---KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~---~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++ +++.+..+++|+|+++ ...++++|++|||.|+|.+|++++++++++|+..+++++++++|.+++++
T Consensus 147 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~ 219 (375)
T cd08282 147 DGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAES 219 (375)
T ss_pred CChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 9988 5677788889999987 78889999999999889999999999999998678889999998887654
No 44
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.97 E-value=5.5e-30 Score=225.05 Aligned_cols=206 Identities=30% Similarity=0.445 Sum_probs=181.2
Q ss_pred eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
||++++.+++. ++++++|.|+| .++||+||++++++|+.|+..+.|.+....+|.++|||++|+|+++|++++.+++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G 79 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG 79 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence 68999998887 99999999996 89999999999999999999998876544567899999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~ 166 (239)
|+|+..+...|++|++|..+..+.|....+. .|.. .+ |+|++|+.++.. .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~~~lp~~ 138 (345)
T cd08286 80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNL-ID------------------GTQAEYVRIPHADNSLYKLPEG 138 (345)
T ss_pred CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccc-cC------------------CeeeeEEEcccccCceEECCCC
Confidence 9999999999999999999999999866442 1221 22 399999999987 89999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++..+++.+.+++.+||.++....++.+++++||.|+|.+|.+++++++.+|+.++++++++++|.+++++
T Consensus 139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 209 (345)
T cd08286 139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK 209 (345)
T ss_pred CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 99999999999999999877777889999999999889999999999999995488889888888776653
No 45
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=213.75 Aligned_cols=183 Identities=30% Similarity=0.324 Sum_probs=170.4
Q ss_pred CcccceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCC
Q 026414 5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (239)
Q Consensus 5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v 82 (239)
.+|+..|.+++++.|.. +++++.|.|+|.++|++||-.|+|+|..|..+..|.+...+.|+++|-|++|+|+++|+++
T Consensus 4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gv 83 (336)
T KOG1197|consen 4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGV 83 (336)
T ss_pred CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCc
Confidence 57888999999988775 8899999999999999999999999999999999999777899999999999999999999
Q ss_pred CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEe
Q 026414 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (239)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (239)
+++++||||.... .+|.|+++..+|...+++
T Consensus 84 tdrkvGDrVayl~-------------------------------------------------~~g~yaee~~vP~~kv~~ 114 (336)
T KOG1197|consen 84 TDRKVGDRVAYLN-------------------------------------------------PFGAYAEEVTVPSVKVFK 114 (336)
T ss_pred cccccccEEEEec-------------------------------------------------cchhhheeccccceeecc
Confidence 9999999997432 234999999999999999
Q ss_pred cCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 163 ~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+|+.+++..||++.+..+|||.-+++-.++++|++|||+.+ |++|++++|++++.|+ .+|++.++.+|++.+++
T Consensus 115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~ake 189 (336)
T KOG1197|consen 115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKE 189 (336)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHh
Confidence 99999999999999999999998888899999999999965 9999999999999998 99999999999998875
No 46
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.97 E-value=7.3e-30 Score=224.80 Aligned_cols=206 Identities=30% Similarity=0.471 Sum_probs=181.2
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC------------CCCCCeeeeeeEEEEEEE
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP------------EGLFPCILGHEAAGIVES 77 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~------------~~~~p~~~G~e~vG~Vv~ 77 (239)
|||+++..++.++++++.|.|+++++||+||+.++++|++|+....+.++ ...+|.++|||++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 78999988888899999999999999999999999999999998877543 124567899999999999
Q ss_pred eCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec
Q 026414 78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (239)
Q Consensus 78 vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (239)
+|++++++++||+|+..+...|++|.+|.+++.+.|.+... .|.. . .|++++|+.++.
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~ 138 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIF-Q------------------DGGYAEYVIVPH 138 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeee-c------------------cCcceeeEEecH
Confidence 99999999999999999999999999999999999976432 2221 2 248999999999
Q ss_pred ceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 158 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
..++++|+++++.+++.+.+.+.|||+++......+++++|||+|+|.+|++++++|+++|++.|++++++++|.+.+.+
T Consensus 139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 218 (350)
T cd08240 139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA 218 (350)
T ss_pred HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999988766667789999999889999999999999999788999988888877643
No 47
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.97 E-value=1.9e-29 Score=221.64 Aligned_cols=205 Identities=33% Similarity=0.575 Sum_probs=182.2
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
|||+++..++.+++++++|.|.+.+++|+||+.++++|+.|+....+..+...+|.++|+|++|.|+++|+++..|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd 80 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD 80 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence 79999998888899999999999999999999999999999999888765556688999999999999999999999999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCCC
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA 167 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~~ 167 (239)
+|+..+...|++|.+|..+..+.|.+... .|.. .+| +|++|+.++.. .++++|+++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~~iP~~~ 138 (345)
T cd08260 81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFT-HPG------------------SFAEYVAVPRADVNLVRLPDDV 138 (345)
T ss_pred EEEECCCCCCCCCccccCcCcccCCCCcc---cccC-CCC------------------cceeEEEcccccCceEECCCCC
Confidence 99887788999999999999999997532 2222 133 99999999974 899999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++.+..+.+|||+++....++.+++++||+|+|.+|++++++++.+|+ .++++.+++++.+.+.+
T Consensus 139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~ 207 (345)
T cd08260 139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARE 207 (345)
T ss_pred CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHH
Confidence 9999999998999999988778889999999999999999999999999999 89999888888777643
No 48
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.97 E-value=1.3e-29 Score=222.24 Aligned_cols=207 Identities=30% Similarity=0.458 Sum_probs=176.7
Q ss_pred eeEEEEecCCCCeEEEeecCCCCC-CCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
||++++.+++. +++++++.|.|. ++||+||+.++++|+.|+....+.++ ..+|.++|+|++|+|+++|++++.+++|
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (344)
T cd08284 1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG 78 (344)
T ss_pred CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence 68999988764 999999999985 99999999999999999988877654 3457789999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~ 166 (239)
|+|+..+...|++|.+|..++...|.+....+..+.. ...|+|++|+.++.. .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~~~~~~~v~~~~~~~~~~p~~ 140 (344)
T cd08284 79 DRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSP------------------NLDGAQAEYVRVPFADGTLLKLPDG 140 (344)
T ss_pred CEEEEcccCCCCCChHHhCcCcccCCCCccccccccC------------------CCCCceeEEEEcccccCceEECCCC
Confidence 9999999899999999999999999865321000110 112499999999864 99999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++++.++++++|||+++. ....+++++|||+|+|.+|++++++++.+|+.++++++++++|.+++.+
T Consensus 141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~ 210 (344)
T cd08284 141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA 210 (344)
T ss_pred CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence 999999999999999999874 5788999999999889999999999999997578888888888776543
No 49
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.97 E-value=8.7e-30 Score=229.46 Aligned_cols=197 Identities=20% Similarity=0.284 Sum_probs=159.4
Q ss_pred cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhh-cCCCC----C--CCCCeeeeeeEEEEEEEeCC
Q 026414 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDP----E--GLFPCILGHEAAGIVESVGE 80 (239)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~----~--~~~p~~~G~e~vG~Vv~vG~ 80 (239)
++||+++++++++ ++++|+|.|+|+++||+|||++++||++|++.+ .+... . ..+|.++|||++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 4689999999987 999999999999999999999999999999976 44321 1 14688999999999999999
Q ss_pred CCC-CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc-
Q 026414 81 GVT-EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV- 158 (239)
Q Consensus 81 ~v~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 158 (239)
+++ .|++||||++.+...|++|..|. + .|.. .+| +|+||+.++..
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~-------------~g~~-~~G------------------~~aey~~v~~~~ 126 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCP-G-------------YSYT-YPG------------------GLATYHIIPNEV 126 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCC-C-------------cccc-CCC------------------cceEEEEecHHh
Confidence 998 59999999999988899888772 1 1211 334 99999999986
Q ss_pred ---eeEecCCCCCchhhhhc-ccc-cchhhhhh--------hhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcC--CCeE
Q 026414 159 ---SVAKIDPQAPLDKVCLL-GCG-VPTGLGAV--------WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAG--ASRV 222 (239)
Q Consensus 159 ---~~~~~p~~~~~~~aa~l-~~~-~~ta~~~~--------~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G--~~~v 222 (239)
.++++|+++++++++.+ +++ ..+++.++ ..+.++++|++|+|+|+ |++|++++|+|+++| +.+|
T Consensus 127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V 206 (410)
T cd08238 127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL 206 (410)
T ss_pred ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence 58999999999888854 211 11233322 24577899999999975 999999999999975 4579
Q ss_pred EEEcCChhhHhhhhhc
Q 026414 223 IGIDIDPKKFDREFWS 238 (239)
Q Consensus 223 v~~~~~~~~~~~~~~~ 238 (239)
++++.+++|++.++++
T Consensus 207 i~~~~~~~r~~~a~~~ 222 (410)
T cd08238 207 VVTDVNDERLARAQRL 222 (410)
T ss_pred EEEcCCHHHHHHHHHh
Confidence 9999999999888653
No 50
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.97 E-value=1.8e-29 Score=220.91 Aligned_cols=203 Identities=29% Similarity=0.481 Sum_probs=177.8
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
||+++++++++...++++|.|.++++||+|||+++++|++|+....+..+. ..|.++|||++|+|+++|++++.|++||
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD 79 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence 789999988874448999999999999999999999999999988776533 3467899999999999999999999999
Q ss_pred EEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414 90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (239)
Q Consensus 90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~ 168 (239)
+|++.+ ..+|+.|.+|..+..+.|.+... .|.. .+| +|++|+.++...++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~p~~~~ 137 (338)
T PRK09422 80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYT-VDG------------------GMAEQCIVTADYAVKVPEGLD 137 (338)
T ss_pred EEEEccCCCCCCCChhhcCCCcccCCCccc---cCcc-ccC------------------cceeEEEEchHHeEeCCCCCC
Confidence 998654 56899999999999999986542 2322 234 999999999999999999999
Q ss_pred chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhhh
Q 026414 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+.+++.+.+++.|||+++ ...++++|++|||+|+|++|++++++++. +|+ +++++++++++.+.+++
T Consensus 138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~ 205 (338)
T PRK09422 138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKE 205 (338)
T ss_pred HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Confidence 999999999999999977 77889999999999999999999999998 498 89999999999888743
No 51
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.97 E-value=1.1e-29 Score=220.65 Aligned_cols=183 Identities=26% Similarity=0.341 Sum_probs=149.9
Q ss_pred ceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeec-hhhhhhhcCCCCC---CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALC-HTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE 84 (239)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~-~~D~~~~~g~~~~---~~~p~~~G~e~vG~Vv~vG~~v~~ 84 (239)
+||++++.+++. +++++.|.|+|++|||||||++++|| ++|+..+.|.++. ..+|.++|||++|+|+++|+++ +
T Consensus 1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~ 78 (308)
T TIGR01202 1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G 78 (308)
T ss_pred CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence 578999998876 99999999999999999999999996 7999988887543 2579999999999999999998 6
Q ss_pred CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (239)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 164 (239)
|++||||+.. |..|..|.. | .+| +|+||+.+|.+.++++|
T Consensus 79 ~~vGdrV~~~----~~~c~~~~~---------------~---~~G------------------~~aey~~v~~~~~~~ip 118 (308)
T TIGR01202 79 FRPGDRVFVP----GSNCYEDVR---------------G---LFG------------------GASKRLVTPASRVCRLD 118 (308)
T ss_pred CCCCCEEEEe----Ccccccccc---------------c---cCC------------------cccceEEcCHHHceeCC
Confidence 9999999863 223322210 1 123 99999999999999999
Q ss_pred CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++. +.+. .+.|||+++.. . ..+++++||+|+|++|++++|+|+++|++.|++++.+++|++.+..
T Consensus 119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence 9998754 4444 56889997743 3 3468999999999999999999999999778888888888877654
No 52
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.97 E-value=2.5e-29 Score=225.56 Aligned_cols=210 Identities=22% Similarity=0.284 Sum_probs=176.8
Q ss_pred cccceeEEEEec--CCC---CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC----------CCCCC-eeeee
Q 026414 6 QVITCKAAVAWE--PNK---PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFP-CILGH 69 (239)
Q Consensus 6 ~~~~~~a~~~~~--~~~---~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p-~~~G~ 69 (239)
.|.+|||+++.. .++ .+++.++|.|.|+++||+||++++++|++|.+...+... ....| .++||
T Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~ 83 (398)
T TIGR01751 4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS 83 (398)
T ss_pred cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence 567899999965 443 499999999999999999999999999999877655321 01223 37999
Q ss_pred eEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcce
Q 026414 70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF 149 (239)
Q Consensus 70 e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (239)
|++|+|+++|++++.|++||+|++.....|++|++|..++.+.|..... .|.... .|+|
T Consensus 84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~------------------~g~~ 142 (398)
T TIGR01751 84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETN------------------FGSF 142 (398)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCC------------------Cccc
Confidence 9999999999999999999999999999999999999999999975432 222112 3499
Q ss_pred eeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhh--hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026414 150 SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID 226 (239)
Q Consensus 150 ~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~ 226 (239)
++|+.++...++++|+++++++++.+.++..|||+++.. ...++++++|||+|+ |.+|++++++++++|+ ++++++
T Consensus 143 ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~ 221 (398)
T TIGR01751 143 AEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVV 221 (398)
T ss_pred eEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEc
Confidence 999999999999999999999999999999999998754 467899999999998 9999999999999999 777888
Q ss_pred CChhhHhhhhh
Q 026414 227 IDPKKFDREFW 237 (239)
Q Consensus 227 ~~~~~~~~~~~ 237 (239)
+++++.+.+++
T Consensus 222 ~~~~~~~~~~~ 232 (398)
T TIGR01751 222 SSPEKAEYCRE 232 (398)
T ss_pred CCHHHHHHHHH
Confidence 88888777654
No 53
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.97 E-value=3.3e-29 Score=222.29 Aligned_cols=225 Identities=34% Similarity=0.583 Sum_probs=183.7
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC---CC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE---VQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~---~~ 86 (239)
||++++..++.++.+++.|.|.++++||+||+.++++|++|+..+.+..+. .+|.++|||++|+|+++|+++.+ |+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~ 79 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS 79 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence 689999998777999999999999999999999999999999988876643 56789999999999999999988 99
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccC-CcceeeecCCcceeeeEEEecceeEecCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN-GKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~p~ 165 (239)
+||+|+..+..+|++|.+|..+..++|.+...+...+..-.+|...+... +..++ ....|+|++|+.++...++++|+
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P~ 158 (367)
T cd08263 80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLPE 158 (367)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccc-cccCCcceeEEEechhhEEECCC
Confidence 99999998899999999999999999997652111110000000000000 00000 01235999999999999999999
Q ss_pred CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++++.+++.+.++++|||+++.....+.++++|||+|+|.+|++++++|+.+|+..++++++++++.+.+.
T Consensus 159 ~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~ 229 (367)
T cd08263 159 SLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAK 229 (367)
T ss_pred CCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 99999999999999999998877778899999999988999999999999999955999988888877654
No 54
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.97 E-value=4.8e-29 Score=220.99 Aligned_cols=206 Identities=25% Similarity=0.380 Sum_probs=170.3
Q ss_pred cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTE 84 (239)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~ 84 (239)
.++++.++..+.. +++++++.|.++++||+||++++++|++|+....+... ...+|.++|||++|+|+++|+++++
T Consensus 16 ~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 94 (364)
T PLN02702 16 EENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKH 94 (364)
T ss_pred cccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCC
Confidence 5566666666655 99999999999999999999999999999998876321 1135778999999999999999999
Q ss_pred CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (239)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 164 (239)
|++||+|+..+..+|++|.+|..+..+.|..... .+....+ |+|++|+.++...++++|
T Consensus 95 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~------------------g~~~~y~~v~~~~~~~~P 153 (364)
T PLN02702 95 LVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVH------------------GSLANQVVHPADLCFKLP 153 (364)
T ss_pred CCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCC------------------CcccceEEcchHHeEECC
Confidence 9999999999999999999999999999986321 1111012 399999999999999999
Q ss_pred CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++.+++.. ..+.++++++ ...++.++++|||+|+|++|++++++++++|+..+++++++++|.+++++
T Consensus 154 ~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 224 (364)
T PLN02702 154 ENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ 224 (364)
T ss_pred CCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 99998888752 2344577765 77888999999999889999999999999999778889888888876653
No 55
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=7.6e-29 Score=216.18 Aligned_cols=204 Identities=31% Similarity=0.488 Sum_probs=179.9
Q ss_pred eeEEEEecCCC----CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414 10 CKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (239)
Q Consensus 10 ~~a~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 85 (239)
||++++.++++ ++++++.+.|.++++||+||+.++++|++|+....|..+...+|.++|||++|+|+++|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 68999998883 58899999988999999999999999999999988876545668899999999999999999999
Q ss_pred CCCCEEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414 86 QPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (239)
Q Consensus 86 ~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 164 (239)
++||+|++.+ ..+|++|.+|..+..+.|..... .|.. .+| +|++|+.++...++++|
T Consensus 81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~~~~~~~~~lp 138 (329)
T cd08298 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYT-VDG------------------GYAEYMVADERFAYPIP 138 (329)
T ss_pred cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccc-cCC------------------ceEEEEEecchhEEECC
Confidence 9999997654 46889999999999999986543 2322 233 89999999999999999
Q ss_pred CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++.+++.+.+++.|||+++ ...++++++++||+|+|.+|+++++++++.|+ +++++++++++.+.+++
T Consensus 139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~ 209 (329)
T cd08298 139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARE 209 (329)
T ss_pred CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHH
Confidence 9999999999999999999987 88999999999999999999999999999998 89999988888887643
No 56
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.97 E-value=6.2e-29 Score=218.04 Aligned_cols=210 Identities=29% Similarity=0.378 Sum_probs=178.0
Q ss_pred eEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCE
Q 026414 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (239)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~ 90 (239)
|+++.+..+..+++++++.|+++++||+||++++++|++|+....+......+|.++|||++|+|+++|+++++|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~ 80 (337)
T cd05283 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR 80 (337)
T ss_pred CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence 46777777777999999999999999999999999999999998887654567889999999999999999999999999
Q ss_pred Ee-ecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 91 VI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 91 V~-~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
|+ ......|++|.+|.++..+.|.+..... .|. +.-.....|+|++|+.++...++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~ 145 (337)
T cd05283 81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGK--------------YPDGTITQGGYADHIVVDERFVFKIPEGLDS 145 (337)
T ss_pred EEEecCCCCCCCCccccCCchhcCcchhhcc-ccc--------------ccCCCcCCCcceeEEEechhheEECCCCCCH
Confidence 97 4455689999999999999998754310 010 0001122459999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++.+.+.+.|||+++ ....++++++++|.|+|.+|++++++++.+|+ +++++++++++.+.+.+
T Consensus 146 ~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~ 211 (337)
T cd05283 146 AAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALK 211 (337)
T ss_pred HHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 99999999999999976 44568999999998889999999999999999 89999999888877653
No 57
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.97 E-value=2.9e-29 Score=208.61 Aligned_cols=184 Identities=26% Similarity=0.348 Sum_probs=163.2
Q ss_pred CCcccceeEEEEecCCCC---eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC-CCCeeeeeeEEEEEEEeC
Q 026414 4 EGQVITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVG 79 (239)
Q Consensus 4 ~~~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~Vv~vG 79 (239)
+..+...|+++|.+-++| ++++++++|....++|+||.+|+.||++|+..+.|.|+.. .+|.+-|+|++|+|+.+|
T Consensus 14 ~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vG 93 (354)
T KOG0025|consen 14 SQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVG 93 (354)
T ss_pred cccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEec
Confidence 356677899999988887 7889999999888889999999999999999999998764 689999999999999999
Q ss_pred CCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecce
Q 026414 80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS 159 (239)
Q Consensus 80 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 159 (239)
+.+++|++||+|+.... + .|+|++|.+.+++.
T Consensus 94 s~vkgfk~Gd~VIp~~a------------------------------~------------------lGtW~t~~v~~e~~ 125 (354)
T KOG0025|consen 94 SNVKGFKPGDWVIPLSA------------------------------N------------------LGTWRTEAVFSESD 125 (354)
T ss_pred CCcCccCCCCeEeecCC------------------------------C------------------CccceeeEeecccc
Confidence 99999999999986644 2 23999999999999
Q ss_pred eEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 160 ~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++++++.++.+.||.+.++..|||+++.+..++++||+|+..|+ +.+|.+.+|+|+++|+ +.+-+.++..-.+.++
T Consensus 126 Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~ 202 (354)
T KOG0025|consen 126 LIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEELK 202 (354)
T ss_pred eEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHH
Confidence 99999999999999999999999999999999999999999988 9999999999999999 5555555655455443
No 58
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.97 E-value=1.3e-28 Score=213.93 Aligned_cols=197 Identities=26% Similarity=0.448 Sum_probs=169.0
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
|||+++.++++ ++++++|.|+++++||+||+.++++|++|.....+..+ +|.++|||++|+|+++|++ +++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~ 73 (319)
T cd08242 1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK 73 (319)
T ss_pred CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence 68999998765 99999999999999999999999999999998887653 5778999999999999988 68999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
+|...+..+|+.|.+|..+....|..... .+....+| +|++|+.++.+.++++|++++.
T Consensus 74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g------------------~~~~~~~v~~~~~~~lP~~~~~ 132 (319)
T cd08242 74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG------------------AFAEYLTLPLENLHVVPDLVPD 132 (319)
T ss_pred eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC------------------ceEEEEEechHHeEECcCCCCH
Confidence 99999999999999999999888886432 22211233 9999999999999999999998
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++.+ ....+++. +....+++++++|||+|+|.+|++++|+++.+|+ +++++++++++.+.+++
T Consensus 133 ~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~ 197 (319)
T cd08242 133 EQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR 197 (319)
T ss_pred HHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 888764 34556666 4577889999999999889999999999999999 69999999988887754
No 59
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.96 E-value=1.4e-28 Score=219.68 Aligned_cols=204 Identities=28% Similarity=0.474 Sum_probs=170.2
Q ss_pred ceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC------C-CCCCCeeeeeeEEEEEEEeCCC
Q 026414 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD------P-EGLFPCILGHEAAGIVESVGEG 81 (239)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~-~~~~p~~~G~e~vG~Vv~vG~~ 81 (239)
.+...++..+ .++++++|.|+++++||+||++++++|++|+..+.+.. + ...+|.++|||++|+|+++|++
T Consensus 28 ~~~~~~~~~~--~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~ 105 (384)
T cd08265 28 NLGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKN 105 (384)
T ss_pred cceeEEEeCC--CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCC
Confidence 3445555543 39999999999999999999999999999998876321 1 1246789999999999999999
Q ss_pred CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeE
Q 026414 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (239)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 161 (239)
+++|++||+|++.+..+|+.|+.|..++.+.|..... .|+. .+| +|++|+.++...++
T Consensus 106 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~-~~g------------------~~~~~v~v~~~~~~ 163 (384)
T cd08265 106 VKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFS-ADG------------------AFAEYIAVNARYAW 163 (384)
T ss_pred CCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeec-CCC------------------cceeeEEechHHeE
Confidence 9999999999999999999999999999999986542 3332 234 99999999999999
Q ss_pred ecCCCC-------Cchhhhhcccccchhhhhhhhh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 162 KIDPQA-------PLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 162 ~~p~~~-------~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
++|+++ +.. ++.+..++++||+++... .++++|++|||+|+|.+|++++++|+++|++.|++++++++|.+
T Consensus 164 ~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~ 242 (384)
T cd08265 164 EINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRN 242 (384)
T ss_pred ECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 999863 444 555666888999987655 68999999999988999999999999999878999999888887
Q ss_pred hhhh
Q 026414 234 REFW 237 (239)
Q Consensus 234 ~~~~ 237 (239)
++.+
T Consensus 243 ~~~~ 246 (384)
T cd08265 243 LAKE 246 (384)
T ss_pred HHHH
Confidence 7654
No 60
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.96 E-value=1.5e-28 Score=213.91 Aligned_cols=193 Identities=31% Similarity=0.429 Sum_probs=167.9
Q ss_pred eeEEEEecCC-CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
||++++..++ +.+++++.+.|+++++||+||++++++|++|+....+. ....+|.++|||++|+|+++|+++++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVKPMPHIPGAEFAGVVEEVGDHVKGVKKG 79 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence 6888887665 45889999998899999999999999999999887642 222457799999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~ 168 (239)
|+|+..+...|++|.+|..++.+.|.+... .|.. . .|+|++|+.++...++++|++++
T Consensus 80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~~~ 137 (325)
T cd08264 80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVV-S------------------NGGYAEYIVVPEKNLFKIPDSIS 137 (325)
T ss_pred CEEEECCCcCCCCChhhcCCCccccCccce---eecc-C------------------CCceeeEEEcCHHHceeCCCCCC
Confidence 999999988999999999999999997542 2221 2 24899999999999999999999
Q ss_pred chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
+++++.+.+++.+||+++. ..+++++++|+|+|+ |.+|++++++|+++|+ .++++.+
T Consensus 138 ~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~ 195 (325)
T cd08264 138 DELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR 195 (325)
T ss_pred HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH
Confidence 9999999999999999774 488999999999998 9999999999999998 6777753
No 61
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.96 E-value=2.1e-28 Score=213.60 Aligned_cols=204 Identities=35% Similarity=0.530 Sum_probs=181.7
Q ss_pred eeEEEEecCCCC-eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC-CCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 10 CKAAVAWEPNKP-LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 10 ~~a~~~~~~~~~-~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
||++++..++++ +.+.+.|.|.+++++|+|++.++++|+.|.....+... ...+|.++|+|++|+|+++|+++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~ 80 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV 80 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence 789999999987 68888999999999999999999999999999888654 2356789999999999999999999999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
||+|+..+..+|+.|.+|..++...|..... .|.. .+| +|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~~~~~~~~~lp~~~ 138 (338)
T cd08254 81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLG-IDG------------------GFAEYIVVPARALVPVPDGV 138 (338)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccc-cCC------------------cceeeEEechHHeEECCCCC
Confidence 9999999999999999999999999976532 2322 233 99999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++.+++.+..+++|||+++.....++++++|||.|+|.+|.+++++|+.+|+ +|+++++++++.+.++
T Consensus 139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAK 206 (338)
T ss_pred CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence 9999999999999999988778889999999998889999999999999998 7999999988887764
No 62
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.96 E-value=3e-28 Score=213.32 Aligned_cols=200 Identities=36% Similarity=0.577 Sum_probs=174.0
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
|||++++.++. +++.+++.|.++++||+|||.++++|+.|+....+..+...+|.++|+|++|+|+++|++++.|++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (337)
T cd08261 1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD 79 (337)
T ss_pred CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence 68999988876 99999999999999999999999999999999887655445678999999999999999999999999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
+|+..+..+|++|..|+.++.+.|..... .+.. . .|+|++|+.++.+ ++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~v~v~~~-~~~~p~~~~~ 136 (337)
T cd08261 80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVH-R------------------DGGFAEYIVVPAD-ALLVPEGLSL 136 (337)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCe---eeec-C------------------CCcceeEEEechh-eEECCCCCCH
Confidence 99998888999999999999999953321 2221 1 2399999999999 9999999999
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++++.+ ..++++++++ ...+++++++|||+|+|.+|.+++++|+.+|+ +++++.+++++.+.++
T Consensus 137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~ 200 (337)
T cd08261 137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAR 200 (337)
T ss_pred HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHH
Confidence 999877 4677888766 77889999999999889999999999999998 8888888888877664
No 63
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.96 E-value=2.3e-28 Score=214.31 Aligned_cols=192 Identities=25% Similarity=0.423 Sum_probs=164.4
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC-----------CCCCCeeeeeeEEEEEEEe
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-----------EGLFPCILGHEAAGIVESV 78 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-----------~~~~p~~~G~e~vG~Vv~v 78 (239)
|||+++.++ .+++++++.|+++++||+||+.++++|+.|++...|... ...+|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 689998866 599999999999999999999999999999998877311 2235788999999999999
Q ss_pred CCCCCC-CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec
Q 026414 79 GEGVTE-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (239)
Q Consensus 79 G~~v~~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (239)
|+++++ |++||+|+..+...|+.|..|..++.+ ..+ |+|++|+.++.
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~--------------~~~------------------g~~~~~~~v~~ 126 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP--------------EAP------------------GGYAEYMLLSE 126 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc--------------CCC------------------CceeeeEEech
Confidence 999987 999999999999999999999432110 012 38999999999
Q ss_pred ceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 158 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+.++++|+++++++++ +..++++||++ ....+++++++|||+|+|.+|.+++|+++++|++.++++++++++.+++++
T Consensus 127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 204 (341)
T cd08262 127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA 204 (341)
T ss_pred HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 9999999999988877 55688899987 478889999999999889999999999999999778888888888877654
No 64
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.96 E-value=2.7e-28 Score=212.24 Aligned_cols=204 Identities=29% Similarity=0.426 Sum_probs=176.6
Q ss_pred eeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
||++++...+. .+++.+.+.|.+.+++|+|+++++++|++|+..+.|.... ..+|.++|||++|+|+++|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 68898874332 2888888888899999999999999999999988876432 24578999999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|++.+...|+.|.+|..+.++.|..... .|.. . .|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~------------------~g~~~~~~~~~~~~~~~~p~~ 138 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEH-V------------------DGGYAEYVAVPARNLLPIPDN 138 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccc---cccc-c------------------CcceeEEEEechHHceeCCCC
Confidence 99999999999999999999999999986432 2221 2 238999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++.+++.+++++.++++++.....++++++++|+|+ +.+|++++++++..|+ +++++++++++.+.+.
T Consensus 139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~ 208 (342)
T cd08266 139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAK 208 (342)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 9999999998889999998878888999999999988 7999999999999999 7888888888777654
No 65
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.96 E-value=3.1e-28 Score=212.39 Aligned_cols=203 Identities=33% Similarity=0.489 Sum_probs=177.3
Q ss_pred eEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCE
Q 026414 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (239)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~ 90 (239)
|++++.+++..+++++.|.|.+++++|+|++.++++|++|.....+......+|.++|||++|+|+++|+++++|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~ 80 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR 80 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence 67888888666999999999999999999999999999999998876544456789999999999999999999999999
Q ss_pred EeecCc-cCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 91 VIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 91 V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
|++.+. ..|++|++|.++..+.|.+... .+.. .+ |+|++|+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~~p~~~~~ 138 (330)
T cd08245 81 VGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYT-TQ------------------GGYAEYMVADAEYTVLLPDGLPL 138 (330)
T ss_pred EEEccccCCCCCChhhhCcCcccCcCccc---cCcc-cC------------------CccccEEEEcHHHeEECCCCCCH
Confidence 987665 5799999999999999997532 1211 12 38999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.+++.+.+...+||.++. ...++++++|||+|+|.+|++++++++.+|+ +|+++++++++.+.+.+
T Consensus 139 ~~~~~l~~~~~ta~~~l~-~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 139 AQAAPLLCAGITVYSALR-DAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARK 204 (330)
T ss_pred HHhhhhhhhHHHHHHHHH-hhCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 999999989999999774 4789999999999888899999999999999 89999999988877643
No 66
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.96 E-value=3.5e-28 Score=213.39 Aligned_cols=203 Identities=29% Similarity=0.431 Sum_probs=169.7
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC---CCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
||++++..+++.+++.+.|.|.|+++||+||++++++|++|+.++.+.. ....+|.++|||++|+|+++|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 6899999888889999999999999999999999999999998765531 1224677899999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+..+..+|+.|.+|..+..++|.+... .+.. .+ |+|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~iP~~ 138 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVN-RP------------------GAFAEYLVIPAFNVWKIPDD 138 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeec-CC------------------CcceeeEEechHHeEECcCC
Confidence 99999999999999999999999999976421 1211 22 49999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++.+++.+ ..+.+++.++.. ...+|++|+|.|+|.+|++++++++++|+++++++++++++.+++.+
T Consensus 139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 206 (341)
T PRK05396 139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK 206 (341)
T ss_pred CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 998888754 455556554432 34689999999889999999999999998678888888888776543
No 67
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=6.6e-28 Score=211.73 Aligned_cols=203 Identities=31% Similarity=0.450 Sum_probs=169.6
Q ss_pred eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
||++++++++. +++++.|.|.| +++||+||++++++|++|+....|..+. ..|.++|||++|+|+++|+++.++++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG 78 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence 78999998776 99999999996 9999999999999999999888776543 457899999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~ 166 (239)
|+|+......|+.|..|..++.+.|..... .|.. .+| +|++|+.++.. .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~~lP~~ 136 (345)
T cd08287 79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAF-VDG------------------GQGEYVRVPLADGTLVKVPGS 136 (345)
T ss_pred CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCC-CCC------------------ceEEEEEcchhhCceEECCCC
Confidence 999886677899999999999999985432 1211 333 99999999874 99999999
Q ss_pred CCchhhh-----hcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVC-----LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa-----~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++..+. .+...+.+|++++ ....++++++|+|.|+|.+|++++++|+++|++.++++++++++.+++++
T Consensus 137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 211 (345)
T cd08287 137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE 211 (345)
T ss_pred CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 9872211 1225677888876 57788999999998889999999999999999679999988888776553
No 68
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.96 E-value=7.5e-28 Score=211.07 Aligned_cols=202 Identities=33% Similarity=0.534 Sum_probs=174.6
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
||++++.+++. +++++.+.|++.+++|+||++++++|+.|+....+......+|.++|+|++|+|+++|++++.+++||
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd 79 (343)
T cd08235 1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD 79 (343)
T ss_pred CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence 68999988875 99999999999999999999999999999998887653334577899999999999999999999999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecce-----eEecC
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-----VAKID 164 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~p 164 (239)
+|+..++..|+.|++|..++.+.|..... .|.. . .|+|++|+.++... ++++|
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~v~v~~~~~~~~~~~~lP 137 (343)
T cd08235 80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNL-Y------------------DGGFAEYVRVPAWAVKRGGVLKLP 137 (343)
T ss_pred EEEEccCCCCCCChHHHCcCcccCCCcce---eccC-C------------------CCcceeeEEecccccccccEEECC
Confidence 99999999999999999999998886542 1211 2 24999999999988 99999
Q ss_pred CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++++.+++.+ .++.+||+++. ...+++|++|||+|+|.+|.+++++|+.+|++.++++++++++.+.+.
T Consensus 138 ~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~ 207 (343)
T cd08235 138 DNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK 207 (343)
T ss_pred CCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 99999998876 67889999774 458999999999988999999999999999944888888888777653
No 69
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.96 E-value=1.7e-27 Score=208.00 Aligned_cols=201 Identities=33% Similarity=0.518 Sum_probs=175.8
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
|||+++.++++ +++.+.+.|+++++||+||++++++|+.|+....|..+. .+|.++|+|++|+|+++|++++++++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd 78 (334)
T cd08234 1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD 78 (334)
T ss_pred CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence 68999998886 999999999999999999999999999999988886543 3778999999999999999999999999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
+|+..+...|++|.+|..+..+.|..... .|.. .+ |+|++|+.++...++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~lP~~~~~ 136 (334)
T cd08234 79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVT-RN------------------GGFAEYVVVPAKQVYKIPDNLSF 136 (334)
T ss_pred EEEEcCCcCCCCCccccCcChhhCCCcce---eccC-CC------------------CcceeEEEecHHHcEECcCCCCH
Confidence 99999988999999999998888876532 2111 22 39999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
.+++.+ ..+.++++++ ...++++++++||+|+|.+|.++++++++.|+..++++++++++.+.+.
T Consensus 137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~ 201 (334)
T cd08234 137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK 201 (334)
T ss_pred HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 888766 6777888876 7888999999999988999999999999999955888998888887764
No 70
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.96 E-value=1.6e-27 Score=209.14 Aligned_cols=201 Identities=32% Similarity=0.516 Sum_probs=175.3
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd 89 (239)
|||+++++.++ +.+++.+.|+++++||+||++++++|+.|+....+.+.. .+|.++|+|++|+|+++|++++.|++||
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~-~~~~~~g~~~~G~V~~~g~~v~~~~~Gd 78 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY-HPPLVLGHEFSGTVEEVGSGVDDLAVGD 78 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC-CCCcccCcceEEEEEEECCCCCcCCCCC
Confidence 68999998876 999999999999999999999999999999888776522 4577899999999999999999999999
Q ss_pred EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (239)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 169 (239)
+|+..+...|+.|++|..+..+.|+.... .|.. . .|+|++|+.++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~lP~~~~~ 136 (343)
T cd08236 79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSR-R------------------DGAFAEYVSVPARNLIKIPDHVDY 136 (343)
T ss_pred EEEEcCCCCCCCChhHHCcChhhCCCcce---Eecc-c------------------CCcccceEEechHHeEECcCCCCH
Confidence 99999888999999999999999987532 2211 2 249999999999999999999999
Q ss_pred hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++++.+ ....++|+++. ...++++++|||+|+|.+|.+++++|+++|+..++++++++++.+.+.
T Consensus 137 ~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~ 201 (343)
T cd08236 137 EEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR 201 (343)
T ss_pred HHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 999887 57789999774 778999999999988999999999999999955999988888777654
No 71
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=1.8e-27 Score=209.19 Aligned_cols=201 Identities=35% Similarity=0.540 Sum_probs=169.5
Q ss_pred EEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCC-CC--CCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP--EGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 12 a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
+++++++.. +++++.+.|.+.++||+|||.++++|+.|...+.+. .. ...+|.++|+|++|+|+++|+++++|++|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (343)
T cd05285 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG 79 (343)
T ss_pred CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence 356777755 999999999999999999999999999998876422 11 11356789999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~ 168 (239)
|+|++.+..+|++|.+|..+..+.|.+.... +....+ |+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------g~~~~~~~v~~~~~~~lP~~~~ 138 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA---ATPPVD------------------GTLCRYVNHPADFCHKLPDNVS 138 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCcccc---ccccCC------------------CceeeeEEecHHHcEECcCCCC
Confidence 9999999999999999999999999865321 110022 3999999999999999999999
Q ss_pred chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++++.+ .++.+|++++ ....+++|+++||.|+|.+|.+++++|+.+|++.|+++++++++.+.++
T Consensus 139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~ 204 (343)
T cd05285 139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAK 204 (343)
T ss_pred HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 9998876 4778888875 8889999999999988999999999999999955899988888877654
No 72
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.96 E-value=3.2e-27 Score=206.86 Aligned_cols=203 Identities=29% Similarity=0.478 Sum_probs=166.8
Q ss_pred EEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhc-CCCC--CCCCCeeeeeeEEEEEEEeCCCCCCCCCCCE
Q 026414 14 VAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (239)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~ 90 (239)
++++.++ +++++.+.|.++++||+||+.++++|++|..... +... ...+|.++|+|++|+|+++|+++++|++||+
T Consensus 2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~ 80 (339)
T cd08232 2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR 80 (339)
T ss_pred eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence 4666766 9999999999999999999999999999988763 3221 1245778999999999999999999999999
Q ss_pred EeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCch
Q 026414 91 VIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLD 170 (239)
Q Consensus 91 V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~ 170 (239)
|+..+...|+.|.+|..++.+.|..... .|....+ ....|+|++|+.++.+.++++|++++++
T Consensus 81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~--------------~~~~g~~~~~v~v~~~~~~~iP~~~~~~ 143 (339)
T cd08232 81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRF--------------PHVQGGFREYLVVDASQCVPLPDGLSLR 143 (339)
T ss_pred EEEccCCcCCCChHHhCcCcccCccccc---eeecccc--------------CCCCCceeeEEEechHHeEECcCCCCHH
Confidence 9999988999999999999999997431 1110000 0013499999999999999999999998
Q ss_pred hhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 171 KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 171 ~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++. ..++.++|+++...... ++++|||.|+|.+|.+++++++.+|+.+++++++++++.++++
T Consensus 144 ~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 144 RAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR 207 (339)
T ss_pred Hhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 8876 56788899877555555 8999999988999999999999999867899988888777654
No 73
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.96 E-value=5.7e-27 Score=205.45 Aligned_cols=204 Identities=34% Similarity=0.526 Sum_probs=176.3
Q ss_pred eeEEEEecCC-CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
|||+++..++ ..+++++++.|.+.++||+||+.++++|++|...+.+..+. ...|.++|||++|+|+++|++++.+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~ 80 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV 80 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence 7899998776 34999999999999999999999999999999988776532 234668899999999999999999999
Q ss_pred CCEEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 88 GDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 88 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
||+|+..+ ...|++|.+|..++...|.+... .|+. . .|+|++|+.++...++++|++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~s~~~~~~~~~~~lp~~ 138 (341)
T cd08297 81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYT-V------------------DGTFAEYAIADARYVTPIPDG 138 (341)
T ss_pred CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccc-c------------------CCcceeEEEeccccEEECCCC
Confidence 99998765 67899999999999999986533 2221 1 238999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++.+++.++....|||+++.. .++++++++||+|+ +.+|++++++++++|+ +++++.+++++.+.+.+
T Consensus 139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~ 208 (341)
T cd08297 139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKE 208 (341)
T ss_pred CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Confidence 9999999999999999997744 58999999999988 7799999999999999 89999999888877643
No 74
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.96 E-value=1.9e-27 Score=207.42 Aligned_cols=177 Identities=23% Similarity=0.239 Sum_probs=150.2
Q ss_pred eeEEEEecCCC-----CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCC
Q 026414 10 CKAAVAWEPNK-----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT 83 (239)
Q Consensus 10 ~~a~~~~~~~~-----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~ 83 (239)
||++++.+++. .+++.++|.|.|+++||+||++++++|++|+..+.|.++. ..+|.++|||++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 78999998874 3888999999999999999999999999999998886543 35688999999999999999999
Q ss_pred C-CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEe
Q 026414 84 E-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (239)
Q Consensus 84 ~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (239)
+ |++||+|+..+. .+| +|++|+.+|...+++
T Consensus 81 ~~~~vGd~V~~~~~------------------------------~~g------------------~~a~~~~v~~~~~~~ 112 (324)
T cd08291 81 AQSLIGKRVAFLAG------------------------------SYG------------------TYAEYAVADAQQCLP 112 (324)
T ss_pred ccCCCCCEEEecCC------------------------------CCC------------------cchheeeecHHHeEE
Confidence 6 999999985321 123 899999999999999
Q ss_pred cCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE--cCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 163 ~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~--G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+|+++++++++.+++...|||. +...... ++++++|+ |+|.+|++++|+|+++|+ ++++++++++|++.+++
T Consensus 113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~ 186 (324)
T cd08291 113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKK 186 (324)
T ss_pred CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 9999999999988888889975 4455555 55566664 459999999999999999 89999999999888754
No 75
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.95 E-value=8.3e-27 Score=202.21 Aligned_cols=203 Identities=30% Similarity=0.512 Sum_probs=169.9
Q ss_pred eeEEEEecCC-CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
||++++.+++ +.+++++++.|.+.+++|+||+.++++|++|.....+.......|.++|+|++|+|+++|++++.|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 80 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG 80 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence 5788888655 359999999999999999999999999999998888765333457899999999999999999999999
Q ss_pred CEEeecCc-cCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
|+|+..+. ..|+.|++|..+....|..... .|.. . .|+|++|+.++...++++|+++
T Consensus 81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~lp~~~ 138 (306)
T cd08258 81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQ-A------------------DGGFAEYVLVPEESLHELPENL 138 (306)
T ss_pred CEEEEccCcCCCCCCcchhCcCcccCCCCce---eeec-C------------------CCceEEEEEcchHHeEECcCCC
Confidence 99988774 6899999999999998875321 1211 1 2499999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc--CChhhHhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDREF 236 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~--~~~~~~~~~~ 236 (239)
++++++ +.....++|+++.....++++++|||.|+|.+|.+++++++++|+ +|+++. +++++.+++.
T Consensus 139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~ 207 (306)
T cd08258 139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAK 207 (306)
T ss_pred CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHH
Confidence 998887 666788899988888889999999998889999999999999998 676663 3444555543
No 76
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.95 E-value=7e-27 Score=202.97 Aligned_cols=176 Identities=27% Similarity=0.319 Sum_probs=153.2
Q ss_pred eeEEEEecCCCC---eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC-CCCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414 10 CKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEV 85 (239)
Q Consensus 10 ~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~ 85 (239)
||++++.+++.+ ++++++|.|.+.++||+|||+++++|+.|+..+.|..+ ...+|.++|||++|+|+++|++++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 689999877653 88999999999999999999999999999999888654 23568899999999999999999999
Q ss_pred CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (239)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~ 165 (239)
++||+|...+. + |+|++|+.++...++++|+
T Consensus 81 ~~Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~ip~ 111 (324)
T cd08292 81 QVGQRVAVAPV-------------------------------H------------------GTWAEYFVAPADGLVPLPD 111 (324)
T ss_pred CCCCEEEeccC-------------------------------C------------------CcceeEEEEchHHeEECCC
Confidence 99999985421 1 3899999999999999999
Q ss_pred CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++++++++.+.+...++|+++ ...++++|++|||+|+ |.+|++++++|+++|+ .++++..++++.+.++
T Consensus 112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~ 181 (324)
T cd08292 112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELR 181 (324)
T ss_pred CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHH
Confidence 999999999988889999866 5678999999999987 9999999999999999 7777777776666553
No 77
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.95 E-value=1.3e-26 Score=203.57 Aligned_cols=202 Identities=33% Similarity=0.448 Sum_probs=168.2
Q ss_pred eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC---CCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
||+++++.++..+.+.+.+.|.|.++|++||++++++|+.|+..+.+.. ....+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 6899999888779999999999999999999999999999988754421 1224567899999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+..+..+|+.|.+|..+..+.|... . ..|.. ..|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-------------------~~g~~~~~v~v~~~~~~~lP~~ 138 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNT-K--ILGVD-------------------TDGCFAEYVVVPEENLWKNDKD 138 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCccc-c--eEecc-------------------CCCcceEEEEechHHcEECcCC
Confidence 999999999999999999999999999742 1 11211 1348999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++.+.+ .+...+.++++++. ...++|++|||.|+|.+|++++++++++|+.++++++++++|.+++.
T Consensus 139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~ 205 (341)
T cd05281 139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK 205 (341)
T ss_pred CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 987544 55557778887653 45578999999988999999999999999867888888888877654
No 78
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.95 E-value=1.7e-27 Score=204.15 Aligned_cols=156 Identities=26% Similarity=0.418 Sum_probs=131.8
Q ss_pred eeeeeEEEEEEEeCCCCC------CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcc
Q 026414 66 ILGHEAAGIVESVGEGVT------EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139 (239)
Q Consensus 66 ~~G~e~vG~Vv~vG~~v~------~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~ 139 (239)
++|||++|+|+++|++++ +|++||||++.+..+|++|.+|+.++.+.|.+.... |....++
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~~~~~---------- 67 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY---GHEALDS---------- 67 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhc---CcccccC----------
Confidence 579999999999999999 899999999999999999999999999999875432 2110000
Q ss_pred eeeecCCcceeeeEEEecc-eeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC
Q 026414 140 IYHFMGTSTFSQYTVVHDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG 218 (239)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~-~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G 218 (239)
.....|+|+||+.+|.. .++++|+++++++++.+.++..|+|+++ ......++++|||+|+|++|++++|+|+++|
T Consensus 68 --~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G 144 (280)
T TIGR03366 68 --GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG 144 (280)
T ss_pred --CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 00012499999999987 7999999999999999998989999876 4556679999999999999999999999999
Q ss_pred CCeEEEEcCChhhHhhhhh
Q 026414 219 ASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 219 ~~~vv~~~~~~~~~~~~~~ 237 (239)
+++|++++++++|++++++
T Consensus 145 ~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 145 AARVVAADPSPDRRELALS 163 (280)
T ss_pred CCEEEEECCCHHHHHHHHH
Confidence 9669999999999988765
No 79
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=1.3e-26 Score=203.68 Aligned_cols=194 Identities=28% Similarity=0.294 Sum_probs=159.7
Q ss_pred eeEEEEecCCCC--eEEEe-ecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC--------------------CCCCCee
Q 026414 10 CKAAVAWEPNKP--LVIED-VQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------------------EGLFPCI 66 (239)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~-~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------------------~~~~p~~ 66 (239)
||++++..++.+ +.+.+ .+.|.+.+++|+|||.++++|++|+.+..|.++ ...+|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 688888776642 55654 577788999999999999999999998876532 2356889
Q ss_pred eeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCC
Q 026414 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGT 146 (239)
Q Consensus 67 ~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~ 146 (239)
+|||++|+|+++|+++++|++||+|+..+...|++|..|.. |.. .|.. .+|
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~~~------~~~~-~~g----------------- 131 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----IDY------IGSE-RDG----------------- 131 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----ccc------cCCC-CCc-----------------
Confidence 99999999999999999999999999988888887766421 111 1111 123
Q ss_pred cceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE
Q 026414 147 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225 (239)
Q Consensus 147 g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~ 225 (239)
+|++|+.++.+.++++|+++++.+++.+.+++.|+|+++ ....+++|++|||+|+ |.+|++++++++++|+ +++++
T Consensus 132 -~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~ 208 (350)
T cd08274 132 -GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV 208 (350)
T ss_pred -cceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence 899999999999999999999999999999999999976 7788999999999998 9999999999999999 67777
Q ss_pred cCChhhHhhhh
Q 026414 226 DIDPKKFDREF 236 (239)
Q Consensus 226 ~~~~~~~~~~~ 236 (239)
++++ +.+.++
T Consensus 209 ~~~~-~~~~~~ 218 (350)
T cd08274 209 AGAA-KEEAVR 218 (350)
T ss_pred eCch-hhHHHH
Confidence 7665 666654
No 80
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.95 E-value=8.6e-27 Score=203.67 Aligned_cols=180 Identities=22% Similarity=0.277 Sum_probs=154.5
Q ss_pred eEEEEecC---CC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414 11 KAAVAWEP---NK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (239)
Q Consensus 11 ~a~~~~~~---~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 85 (239)
||+++..+ +. .++++|+|.|+|+++||+|||+++++|+.|...+.+..+...+|.++|+|++|+|+++|++++.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF 80 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 56677665 33 38889999999999999999999999999998887765444568899999999999999999999
Q ss_pred CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (239)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~ 165 (239)
++||+|+.... .. .+ |+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~---------------------------~~-~~------------------g~~~~~~~v~~~~~~~ip~ 114 (336)
T TIGR02817 81 KPGDEVWYAGD---------------------------ID-RP------------------GSNAEFHLVDERIVGHKPK 114 (336)
T ss_pred CCCCEEEEcCC---------------------------CC-CC------------------CcccceEEEcHHHcccCCC
Confidence 99999974310 00 12 3899999999999999999
Q ss_pred CCCchhhhhcccccchhhhhhhhhcCCCC-----CCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhhHhhhhh
Q 026414 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~-----g~~vlI~G~-g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++++.++++..|||+++....++++ |++|||+|+ |.+|++++|+|+++ |+ +|+++.+++++.+.+++
T Consensus 115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~ 192 (336)
T TIGR02817 115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLE 192 (336)
T ss_pred CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHH
Confidence 99999999999999999998877787776 999999987 99999999999998 98 89999988888877653
No 81
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.94 E-value=6.5e-26 Score=199.05 Aligned_cols=165 Identities=20% Similarity=0.244 Sum_probs=136.7
Q ss_pred eEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhc---CCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCcc
Q 026414 22 LVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWS---GKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQA 97 (239)
Q Consensus 22 ~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~---g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~ 97 (239)
++++|.|.|+| ++|||||||++++||+.|..... +.....++|.++|||++|+|+++|+++++|++||+|+...
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-- 100 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN-- 100 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence 88999999987 49999999999999999864332 1111124678999999999999999999999999997421
Q ss_pred CCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchh----hh
Q 026414 98 ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK----VC 173 (239)
Q Consensus 98 ~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~----aa 173 (239)
++|++|+.++.+.++++|+++++.+ ++
T Consensus 101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a 131 (345)
T cd08293 101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG 131 (345)
T ss_pred -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence 1799999999999999999864332 44
Q ss_pred hcccccchhhhhhhhhcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 174 LLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 174 ~l~~~~~ta~~~~~~~~~~~~g--~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.+..++.|||+++....++++| ++|||+|+ |++|++++|+|+++|+.+|++++++++|.+.+.+
T Consensus 132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 5667889999988777788877 99999988 9999999999999998679999999988887654
No 82
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.94 E-value=7.1e-26 Score=198.78 Aligned_cols=198 Identities=29% Similarity=0.409 Sum_probs=165.5
Q ss_pred EecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC---CCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEE
Q 026414 15 AWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV 91 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V 91 (239)
-+.++.++++++.|.|.|+++||+||+.++++|+.|...+.+.. ....+|.++|+|++|+|+++|+++++|++||+|
T Consensus 4 ~~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V 83 (340)
T TIGR00692 4 KTKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYV 83 (340)
T ss_pred cccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEE
Confidence 45678889999999999999999999999999999998765532 112356789999999999999999999999999
Q ss_pred eecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchh
Q 026414 92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK 171 (239)
Q Consensus 92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~ 171 (239)
+..+...|++|..|..+....|.+... .|.. . .|+|++|+.++.+.++++|++++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~lp~~~~~~~ 141 (340)
T TIGR00692 84 SVETHIVCGKCYACRRGQYHVCQNTKI---FGVD-T------------------DGCFAEYAVVPAQNIWKNPKSIPPEY 141 (340)
T ss_pred EECCcCCCCCChhhhCcChhhCcCcce---Eeec-C------------------CCcceeEEEeehHHcEECcCCCChHh
Confidence 999999999999999999999998532 1221 1 24899999999999999999999865
Q ss_pred hhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 172 aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+ .++.++.++++++ ....++|++++|.|+|.+|.+++++++++|.+.|++++++++|.+++++
T Consensus 142 a-~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~ 204 (340)
T TIGR00692 142 A-TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK 204 (340)
T ss_pred h-hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 5 4566788888765 3456789999998889999999999999998558888888888776543
No 83
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.94 E-value=6.3e-26 Score=198.71 Aligned_cols=177 Identities=29% Similarity=0.383 Sum_probs=153.0
Q ss_pred eeEEEEecCCCC---eEEEeecCCCCCC-CeEEEEEeEeeechhhhhhhcCCCCCC-C----CCeeeeeeEEEEEEEeCC
Q 026414 10 CKAAVAWEPNKP---LVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKDPEG-L----FPCILGHEAAGIVESVGE 80 (239)
Q Consensus 10 ~~a~~~~~~~~~---~~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g~~~~~-~----~p~~~G~e~vG~Vv~vG~ 80 (239)
|||+++..++.+ +++++.|.|.|.+ +||+||+.++++|+.|...+.+..+.. . +|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 789999988875 8999999999887 999999999999999999888765321 2 567899999999999999
Q ss_pred CCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEeccee
Q 026414 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160 (239)
Q Consensus 81 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 160 (239)
+++.|++||+|+.... . .|+|++|+.++...+
T Consensus 81 ~v~~~~~Gd~V~~~~~------------------------------~------------------~g~~~~~~~v~~~~~ 112 (341)
T cd08290 81 GVKSLKPGDWVIPLRP------------------------------G------------------LGTWRTHAVVPADDL 112 (341)
T ss_pred CCCCCCCCCEEEecCC------------------------------C------------------CccchheEeccHHHe
Confidence 9999999999985421 1 138999999999999
Q ss_pred EecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh----hhHhhh
Q 026414 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRE 235 (239)
Q Consensus 161 ~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~----~~~~~~ 235 (239)
+++|+++++++++.+++++.|+|+++.....++++++|||+|+ |.+|++++++|++.|+ +++++.+++ ++.+.+
T Consensus 113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~ 191 (341)
T cd08290 113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERL 191 (341)
T ss_pred EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHH
Confidence 9999999999999999999999998877788999999999987 9999999999999998 677766654 445544
No 84
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.94 E-value=1.1e-25 Score=195.99 Aligned_cols=179 Identities=26% Similarity=0.291 Sum_probs=157.6
Q ss_pred ceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
+||++++++++.+ +++++++.|.++++||+||+.++++|++|+....+.++...+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence 5899999887663 89999999999999999999999999999998887765445678899999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+.... . .|+|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~------------------~g~~~~~v~v~~~~~~~lp~~ 112 (327)
T PRK10754 81 VGDRVVYAQS------------------------------A------------------LGAYSSVHNVPADKAAILPDA 112 (327)
T ss_pred CCCEEEECCC------------------------------C------------------CcceeeEEEcCHHHceeCCCC
Confidence 9999974211 1 138999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++++++.+.+...++|.++.....+++|++|+|+|+ |.+|++++++++.+|+ +++++++++++.+.++
T Consensus 113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~ 182 (327)
T PRK10754 113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAK 182 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 9999999888888999998877788999999999976 9999999999999999 7888988888877664
No 85
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.94 E-value=8.1e-25 Score=190.41 Aligned_cols=199 Identities=27% Similarity=0.336 Sum_probs=163.7
Q ss_pred eeEEEEecCC--CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~--~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
|||++++..+ +.+++.+.+.|.++++|++|++.++++|++|+....+..+. ...|.++|||++|+|+++|+.+.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 7899998664 34888899988899999999999999999999988776432 24678899999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+......|+.+.+| .|... .. .| ....|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~------~~~~~-~~--~~-------------------~~~~g~~~~~~~~~~~~~~~lp~~ 132 (336)
T cd08276 81 VGDRVVPTFFPNWLDGPPT------AEDEA-SA--LG-------------------GPIDGVLAEYVVLPEEGLVRAPDH 132 (336)
T ss_pred CCCEEEEeccccccccccc------ccccc-cc--cc-------------------cccCceeeeEEEecHHHeEECCCC
Confidence 9999998776655433322 22111 00 11 111348999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++.+++.+.+.+.+||+++.....+++|++|+|+|+|.+|++++++++++|+ +++++++++++.+.+.+
T Consensus 133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~ 202 (336)
T cd08276 133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKA 202 (336)
T ss_pred CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 99999999999999999988777889999999999889999999999999998 79999998888877643
No 86
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.93 E-value=4.8e-25 Score=193.45 Aligned_cols=176 Identities=26% Similarity=0.313 Sum_probs=146.1
Q ss_pred ceeEEEEecCCC-CeEEEeecC----CCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeE--EEEEEEeCC
Q 026414 9 TCKAAVAWEPNK-PLVIEDVQV----APPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEA--AGIVESVGE 80 (239)
Q Consensus 9 ~~~a~~~~~~~~-~~~~~~~~~----p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~--vG~Vv~vG~ 80 (239)
-+|++....+.. .|++++.++ |+|++|||||||++++||+.|++.+.|.+.. ..+|.++|++. .|.+..+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~ 86 (338)
T cd08295 7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS 86 (338)
T ss_pred EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence 356666544443 499999988 7899999999999999999999998885432 24677888754 455555778
Q ss_pred CCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec-ce
Q 026414 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VS 159 (239)
Q Consensus 81 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~ 159 (239)
.++.|++||+|... |+|+||+++|. ..
T Consensus 87 ~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~~ 114 (338)
T cd08295 87 GNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQD 114 (338)
T ss_pred CCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchhc
Confidence 88889999999621 27999999999 79
Q ss_pred eEecC-CCCCch-hhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 160 VAKID-PQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 160 ~~~~p-~~~~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++++| +++++. +++.+.+++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++++
T Consensus 115 ~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~ 193 (338)
T cd08295 115 LRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLK 193 (338)
T ss_pred eeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 99995 568876 788899999999998878889999999999988 9999999999999999 8999999998888775
Q ss_pred h
Q 026414 237 W 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 194 ~ 194 (338)
T cd08295 194 N 194 (338)
T ss_pred H
Confidence 4
No 87
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.93 E-value=5.2e-25 Score=193.44 Aligned_cols=179 Identities=24% Similarity=0.266 Sum_probs=151.0
Q ss_pred eeEEEEecCCCC---eEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCC---------------CCCCCeeeeee
Q 026414 10 CKAAVAWEPNKP---LVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP---------------EGLFPCILGHE 70 (239)
Q Consensus 10 ~~a~~~~~~~~~---~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~---------------~~~~p~~~G~e 70 (239)
|||+++++.+++ ++++|.+.|.| +++||+||++++++|++|+....+... ...+|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 788998888775 89999999999 499999999999999999998877421 23568899999
Q ss_pred EEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCccee
Q 026414 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150 (239)
Q Consensus 71 ~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~ 150 (239)
++|+|+++|++++++++||+|+..+.. +..|+|+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~----------------------------------------------~~~g~~~ 114 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP----------------------------------------------WSQGTHA 114 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC----------------------------------------------CCCccce
Confidence 999999999999999999999864320 0123899
Q ss_pred eeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCC----CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE
Q 026414 151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE----PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225 (239)
Q Consensus 151 ~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~----~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~ 225 (239)
+|+.++...++++|+++++.+++.+.+++.|+|+++.....+. +|++|+|+|+ |.+|++++++++++|+ .++++
T Consensus 115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~ 193 (350)
T cd08248 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT 193 (350)
T ss_pred eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence 9999999999999999999999999999999999876766665 4999999986 9999999999999999 77777
Q ss_pred cCChhhHhhhh
Q 026414 226 DIDPKKFDREF 236 (239)
Q Consensus 226 ~~~~~~~~~~~ 236 (239)
.++ ++.++++
T Consensus 194 ~~~-~~~~~~~ 203 (350)
T cd08248 194 CST-DAIPLVK 203 (350)
T ss_pred eCc-chHHHHH
Confidence 654 4555443
No 88
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.93 E-value=8.5e-25 Score=189.78 Aligned_cols=182 Identities=23% Similarity=0.241 Sum_probs=152.2
Q ss_pred eeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
|||++++++++ ++++++.|.|.++++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++ +++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 78999998886 6999999999999999999999999999999988876532 245779999999999999 456899
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+.... ..|.. .+ |+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~------------------------~~g~~-~~------------------g~~~~~~~v~~~~~~~lp~~ 115 (325)
T cd05280 79 EGDEVLVTGY------------------------DLGMN-TD------------------GGFAEYVRVPADWVVPLPEG 115 (325)
T ss_pred CCCEEEEccc------------------------ccCCC-CC------------------ceeEEEEEEchhhEEECCCC
Confidence 9999986421 01111 12 38999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhc--CCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTA--KVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~--~~~-~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++.+++.+.+.+.++|.++.... ... .+++|+|+|+ |.+|++++++|+++|+ .|+++++++++++.+++
T Consensus 116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~ 189 (325)
T cd05280 116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKS 189 (325)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence 999999999999999998775443 335 3579999998 9999999999999999 79999999988887654
No 89
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.93 E-value=1.1e-24 Score=189.71 Aligned_cols=178 Identities=25% Similarity=0.266 Sum_probs=154.6
Q ss_pred ceeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414 9 TCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV 85 (239)
Q Consensus 9 ~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~ 85 (239)
||||+++.+.++ .+++++.+.|++.++||+|||.++++|+.|.....+..+. ...|.++|||++|+|+++|++++++
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 699999998776 3777888888899999999999999999999888775432 2446789999999999999999999
Q ss_pred CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (239)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~ 165 (239)
++||+|+... . .|+|++|+.++...++++|+
T Consensus 81 ~~Gd~V~~~~-------------------------------~------------------~g~~~~~~~v~~~~~~~ip~ 111 (334)
T PTZ00354 81 KEGDRVMALL-------------------------------P------------------GGGYAEYAVAHKGHVMHIPQ 111 (334)
T ss_pred CCCCEEEEec-------------------------------C------------------CCceeeEEEecHHHcEeCCC
Confidence 9999997431 1 13899999999999999999
Q ss_pred CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++++.+++.+.+++.+||+++.....++++++|+|+|+ |.+|++++++++++|+ .++++.+++++.+.+.
T Consensus 112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 182 (334)
T PTZ00354 112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCK 182 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 99999999999899999998877788999999999987 9999999999999999 6677888888877764
No 90
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.93 E-value=1.1e-24 Score=189.61 Aligned_cols=170 Identities=22% Similarity=0.201 Sum_probs=141.9
Q ss_pred ceeEEEEecC--CC----CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCC
Q 026414 9 TCKAAVAWEP--NK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (239)
Q Consensus 9 ~~~a~~~~~~--~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v 82 (239)
+||++++.+. ++ .+++++.|.|+|++|||||||++++||+.|...... ...+|.++|+|++|+|++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~ 75 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN 75 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence 6899998873 33 389999999999999999999999999887542221 124688999999999995 34
Q ss_pred CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc---e
Q 026414 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV---S 159 (239)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~ 159 (239)
+.|++||+|... ++|++|+.++.. .
T Consensus 76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~ 103 (329)
T cd08294 76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD 103 (329)
T ss_pred CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence 579999999731 168899999999 9
Q ss_pred eEecCCCCC-----chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 160 VAKIDPQAP-----LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 160 ~~~~p~~~~-----~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
++++|++++ ...++.+++++.|||+++....++++|++|||+|+ |++|.+++|+|+++|+ +|+++++++++.+
T Consensus 104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~ 182 (329)
T cd08294 104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA 182 (329)
T ss_pred eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence 999999987 12334677899999998878889999999999986 9999999999999999 8999999999888
Q ss_pred hhhh
Q 026414 234 REFW 237 (239)
Q Consensus 234 ~~~~ 237 (239)
++++
T Consensus 183 ~l~~ 186 (329)
T cd08294 183 WLKE 186 (329)
T ss_pred HHHH
Confidence 8754
No 91
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.93 E-value=6.4e-25 Score=185.01 Aligned_cols=175 Identities=35% Similarity=0.509 Sum_probs=151.7
Q ss_pred eEEEEEeEeeechhhhhhhcCCCC-CCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCC
Q 026414 36 EVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG 114 (239)
Q Consensus 36 eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~ 114 (239)
||+|+|+++++|+.|+..+.+..+ ...+|.++|||++|+|+++|++++.|++||+|+..+...|+.|++|.. .|.
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~ 76 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP 76 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence 689999999999999999888754 335678999999999999999999999999999999999999999997 565
Q ss_pred CcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCC
Q 026414 115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP 194 (239)
Q Consensus 115 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~ 194 (239)
.... .+. ...|+|++|+.++...++++|+++++++++.+++++.+||+++.....+++
T Consensus 77 ~~~~---~~~-------------------~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~ 134 (271)
T cd05188 77 GGGI---LGE-------------------GLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP 134 (271)
T ss_pred CCCE---ecc-------------------ccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence 4332 111 123489999999999999999999999999999999999998877777799
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++|||+|+|.+|++++++++..|. +|+++++++++.+.+++
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 9999999996699999999999997 99999999888777653
No 92
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.93 E-value=1.6e-24 Score=188.79 Aligned_cols=175 Identities=27% Similarity=0.271 Sum_probs=152.6
Q ss_pred ceeEEEEecCCC----CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCC
Q 026414 9 TCKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT 83 (239)
Q Consensus 9 ~~~a~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~ 83 (239)
.||++++.+++. ++++++++.|.+.++||+||+.++++|+.|+....+.... ..+|.++|||++|+|+.+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~ 80 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence 489999986655 5999999999999999999999999999999988776532 35788999999999999999999
Q ss_pred CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (239)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (239)
++++||+|+... .|+|++|+.++.+.++++
T Consensus 81 ~~~~Gd~V~~~~--------------------------------------------------~g~~~s~~~v~~~~~~~i 110 (329)
T cd08250 81 DFKVGDAVATMS--------------------------------------------------FGAFAEYQVVPARHAVPV 110 (329)
T ss_pred CCCCCCEEEEec--------------------------------------------------CcceeEEEEechHHeEEC
Confidence 999999998531 138999999999999999
Q ss_pred CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
|++. .+++.+..++.|||+++.....++++++++|+|+ |.+|++++++++..|+ .++++.+++++.+.++
T Consensus 111 p~~~--~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 181 (329)
T cd08250 111 PELK--PEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLK 181 (329)
T ss_pred CCCc--chhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHH
Confidence 9873 4677788899999998877788999999999986 9999999999999999 7888888888777654
No 93
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.93 E-value=3.2e-24 Score=189.44 Aligned_cols=179 Identities=21% Similarity=0.284 Sum_probs=144.6
Q ss_pred CcccceeEEEEecCCC------CeEEEe---ecCCC-CCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeee--eEE
Q 026414 5 GQVITCKAAVAWEPNK------PLVIED---VQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH--EAA 72 (239)
Q Consensus 5 ~~~~~~~a~~~~~~~~------~~~~~~---~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~--e~v 72 (239)
.++.+.|.+++-...+ .|++++ ++.|. +++||||||+.++++|+.|...+.+......+|.++|+ |++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~ 83 (348)
T PLN03154 4 GQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGF 83 (348)
T ss_pred CccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEee
Confidence 4556678877743222 288877 46664 48999999999999999988654432222245789998 889
Q ss_pred EEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeee
Q 026414 73 GIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQY 152 (239)
Q Consensus 73 G~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 152 (239)
|+|..+|++++.|++||+|... ++|++|
T Consensus 84 G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey 111 (348)
T PLN03154 84 GVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEY 111 (348)
T ss_pred EEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEE
Confidence 9999999999999999999621 279999
Q ss_pred EEEecce--eEe--cCCCCCch-hhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026414 153 TVVHDVS--VAK--IDPQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID 226 (239)
Q Consensus 153 ~~~~~~~--~~~--~p~~~~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~ 226 (239)
..++... +++ +|++++++ +++.+++++.|||+++....++++|++|||+|+ |++|++++|+|+++|+ +|++++
T Consensus 112 ~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~ 190 (348)
T PLN03154 112 SLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSA 190 (348)
T ss_pred EEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEc
Confidence 9888743 544 58999886 688899999999998878889999999999988 9999999999999999 899999
Q ss_pred CChhhHhhhh
Q 026414 227 IDPKKFDREF 236 (239)
Q Consensus 227 ~~~~~~~~~~ 236 (239)
++++|+++++
T Consensus 191 ~~~~k~~~~~ 200 (348)
T PLN03154 191 GSSQKVDLLK 200 (348)
T ss_pred CCHHHHHHHH
Confidence 9998888765
No 94
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.93 E-value=2.1e-24 Score=188.50 Aligned_cols=181 Identities=22% Similarity=0.242 Sum_probs=155.3
Q ss_pred eeEEEEecCCCC-----eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414 10 CKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (239)
Q Consensus 10 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 84 (239)
||++++.+++++ ++.++++.|.+.+++|+||+.++++|++|+..+.+..+....|.++|||++|+|+++|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~ 80 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL 80 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence 689999988873 666788888899999999999999999999988776543346678999999999999999999
Q ss_pred CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (239)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 164 (239)
|++||+|...... + .+ |+|++|+.++...++++|
T Consensus 81 ~~~Gd~V~~~~~~-------------------------~---~~------------------g~~~~~~~v~~~~~~~ip 114 (336)
T cd08252 81 FKVGDEVYYAGDI-------------------------T---RP------------------GSNAEYQLVDERIVGHKP 114 (336)
T ss_pred CCCCCEEEEcCCC-------------------------C---CC------------------ccceEEEEEchHHeeeCC
Confidence 9999999853210 0 12 389999999999999999
Q ss_pred CCCCchhhhhcccccchhhhhhhhhcCCCC-----CCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~-----g~~vlI~G~-g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~ 237 (239)
++++.++++.+++++.++|.++.+...+.+ +++|+|+|+ |.+|++++++++.+| + +++++++++++.+.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~ 193 (336)
T cd08252 115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKE 193 (336)
T ss_pred CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHh
Confidence 999999999999999999998777777777 999999986 999999999999999 7 89999988888777643
No 95
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.93 E-value=2.9e-24 Score=185.58 Aligned_cols=181 Identities=28% Similarity=0.405 Sum_probs=154.1
Q ss_pred eeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
||++++...+. .+++.+.+.|.++++||+||++++++|+.|+....+..+....|.++|||++|+|+++|. ..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~ 78 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP 78 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence 68888877664 377788888889999999999999999999998887654445678999999999999995 57999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
||+|+..... .|.. .+ |+|++|+.++...++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~-~~------------------g~~~~~~~~~~~~~~~ip~~~ 115 (320)
T cd08243 79 GQRVATAMGG------------------------MGRT-FD------------------GSYAEYTLVPNEQVYAIDSDL 115 (320)
T ss_pred CCEEEEecCC------------------------CCCC-CC------------------cccceEEEcCHHHcEeCCCCC
Confidence 9999865320 0000 12 389999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++++++.+.+++.+||+++.....+++|++|||+|+ |.+|++++++|+++|+ +|+++.+++++.+.+.
T Consensus 116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 184 (320)
T cd08243 116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLK 184 (320)
T ss_pred CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 999999999999999998877788999999999988 9999999999999999 7999998888877764
No 96
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.93 E-value=2.6e-24 Score=187.78 Aligned_cols=157 Identities=21% Similarity=0.247 Sum_probs=135.3
Q ss_pred eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCC
Q 026414 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRE 101 (239)
Q Consensus 22 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~ 101 (239)
+++.|.|.|+|++|||||||.++++|+.|.. |.+.....|.++|.|++|+|+++|+ +|++||+|...
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------- 85 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------- 85 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence 8899999999999999999999999996543 4333334577999999999999874 59999999731
Q ss_pred CccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec----CCCCCchhh-hhcc
Q 026414 102 CKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI----DPQAPLDKV-CLLG 176 (239)
Q Consensus 102 c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----p~~~~~~~a-a~l~ 176 (239)
++|++|+.++...+.++ |++++++++ +.++
T Consensus 86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~ 120 (325)
T TIGR02825 86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG 120 (325)
T ss_pred ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence 16888999998887777 899999887 6788
Q ss_pred cccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 177 CGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 177 ~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++.|||+++....++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|.+.+++
T Consensus 121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK 181 (325)
T ss_pred cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 899999998888899999999999986 9999999999999999 89999999988887754
No 97
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.93 E-value=4.3e-24 Score=185.30 Aligned_cols=178 Identities=29% Similarity=0.371 Sum_probs=152.6
Q ss_pred eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC---CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE 84 (239)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~~G~e~vG~Vv~vG~~v~~ 84 (239)
|||+++++++.+ +++.+.+.|.+.++||+|++.++++|+.|+....|..+. ..+|.++|||++|+|+++|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 689998876543 777788888889999999999999999999888775432 356788999999999999999999
Q ss_pred CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (239)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 164 (239)
+++||+|+..... .+| +|++|+.++...++++|
T Consensus 81 ~~~Gd~V~~~~~~-----------------------------~~g------------------~~~~~~~v~~~~~~~lp 113 (324)
T cd08244 81 AWLGRRVVAHTGR-----------------------------AGG------------------GYAELAVADVDSLHPVP 113 (324)
T ss_pred CCCCCEEEEccCC-----------------------------CCc------------------eeeEEEEEchHHeEeCC
Confidence 9999999854210 123 89999999999999999
Q ss_pred CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++++.+++.+.+.+.|+|. +.....++++++++|+|+ |.+|++++++|+.+|+ +++++++++++.+.++
T Consensus 114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~ 184 (324)
T cd08244 114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVR 184 (324)
T ss_pred CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 99999999999999999964 667888999999999986 9999999999999998 8999998888877764
No 98
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.93 E-value=1.1e-24 Score=191.28 Aligned_cols=183 Identities=31% Similarity=0.356 Sum_probs=152.2
Q ss_pred eeEEEEecCC-CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
|||+++++++ ..+++++++.|+|+++||+||++++++|++|+....+.. ....|.++|||++|+|+.+|++++.+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG 79 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence 7899999884 348999999999999999999999999999988775543 12356789999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~ 168 (239)
|+|+......|+ +.. . .|+|++|+.++...++++|++++
T Consensus 80 d~V~~~~~~~~~----------------------~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~ 118 (339)
T cd08249 80 DRVAGFVHGGNP----------------------NDP-R------------------NGAFQEYVVADADLTAKIPDNIS 118 (339)
T ss_pred CEEEEEeccccC----------------------CCC-C------------------CCcccceEEechhheEECCCCCC
Confidence 999876432111 000 1 23899999999999999999999
Q ss_pred chhhhhcccccchhhhhhhhhcCC----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 169 LDKVCLLGCGVPTGLGAVWNTAKV----------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~----------~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+.+++.+++.+.|+|+++....++ ++++++||+|+ |.+|++++++++++|+ .++++. +++|.+.++
T Consensus 119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~ 195 (339)
T cd08249 119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVK 195 (339)
T ss_pred HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHH
Confidence 999999999999999987655544 78999999998 9999999999999999 777776 457777664
No 99
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.93 E-value=3.3e-24 Score=186.48 Aligned_cols=182 Identities=20% Similarity=0.206 Sum_probs=148.4
Q ss_pred eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC-CCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
|||+++.+.+++ +.+++.|.|.|+++||+||+.++++|++|.....+.. ....+|.++|||++|+|++.| +.+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 789999887763 8899999999999999999999999999987664321 122457899999999999954 56799
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+..+.. .|.. .+| +|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~~-~~g------------------~~~~~~~v~~~~~~~~p~~ 115 (326)
T cd08289 79 PGDEVIVTSYD------------------------LGVS-HHG------------------GYSEYARVPAEWVVPLPKG 115 (326)
T ss_pred CCCEEEEcccc------------------------cCCC-CCC------------------cceeEEEEcHHHeEECCCC
Confidence 99999864320 1111 233 9999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhh--cC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNT--AK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~--~~-~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++++.+++++.||+.++... .. ...+++|||+|+ |.+|.+++++|+++|+ +|+++++++++.+.+++
T Consensus 116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~ 189 (326)
T cd08289 116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKK 189 (326)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHH
Confidence 99999999999999998866432 23 335789999988 9999999999999999 89999999988887654
No 100
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=4.7e-24 Score=183.72 Aligned_cols=173 Identities=20% Similarity=0.168 Sum_probs=148.6
Q ss_pred eeEEEEecCC-CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
||++++.+.+ ..+++++.+.|.++++||+||+.++++|+.|....... ..|.++|||++|+|+++|+++..|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G 76 (305)
T cd08270 1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG 76 (305)
T ss_pred CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence 5888887643 12777899999999999999999999999999876522 235689999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~ 168 (239)
|+|+... .+ |+|++|+.++.+.++++|++++
T Consensus 77 d~V~~~~-------------------------------~~------------------g~~~~~~~v~~~~~~~ip~~~~ 107 (305)
T cd08270 77 ARVVGLG-------------------------------AM------------------GAWAELVAVPTGWLAVLPDGVS 107 (305)
T ss_pred CEEEEec-------------------------------CC------------------cceeeEEEEchHHeEECCCCCC
Confidence 9997431 12 3899999999999999999999
Q ss_pred chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+++++.+++.+.|||+++...... +|++++|+|+ |.+|.+++++++..|+ +++++++++++.+.+++
T Consensus 108 ~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~ 175 (305)
T cd08270 108 FAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRE 175 (305)
T ss_pred HHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 999999999999999987555544 5999999988 9999999999999998 89999999988888754
No 101
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.92 E-value=9.8e-24 Score=183.33 Aligned_cols=181 Identities=20% Similarity=0.218 Sum_probs=149.1
Q ss_pred eeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
|||+++++++. .++++++|.|.|+++||+||+.++++|++|.....+.... ..+|.++|||++|+|++ +++++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 78999998775 4999999999999999999999999999999988776421 24577899999999999 6777899
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+..... .|. ...|+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~-------------------~~~g~~~~~~~v~~~~~~~lp~~ 115 (324)
T cd08288 79 PGDRVVLTGWG------------------------VGE-------------------RHWGGYAQRARVKADWLVPLPEG 115 (324)
T ss_pred CCCEEEECCcc------------------------CCC-------------------CCCCcceeEEEEchHHeeeCCCC
Confidence 99999864210 000 01238999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhh--hhcCCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVW--NTAKVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~--~~~~~~-~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++++++.+.+++.+++.++. ...... ++++|||+|+ |.+|.+++++|+++|+ ++++++.+++|.+.++
T Consensus 116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~ 188 (324)
T cd08288 116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLR 188 (324)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH
Confidence 999999999988888876543 123444 6789999998 9999999999999999 7888888888888764
No 102
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.92 E-value=1.3e-23 Score=182.70 Aligned_cols=181 Identities=26% Similarity=0.267 Sum_probs=147.9
Q ss_pred eEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 11 KAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 11 ~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
||+++...+. .++++++|.|.++++||+||++++++|++|+....|..+. ..+|.++|||++|+|++ .+++.|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 5777776665 4789999999999999999999999999999988886532 24588999999999998 55678999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
||+|+..... .|.. .+ |+|++|+.++...++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~-~~------------------g~~~~~~~~~~~~~~~iP~~~ 115 (323)
T TIGR02823 79 GDEVIVTGYG------------------------LGVS-HD------------------GGYSQYARVPADWLVPLPEGL 115 (323)
T ss_pred CCEEEEccCC------------------------CCCC-CC------------------ccceEEEEEchhheEECCCCC
Confidence 9999864320 1111 12 389999999999999999999
Q ss_pred Cchhhhhcccccchhhhhhhh--hcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWN--TAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~-~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++++.+.+.+.+++.++.. ...+.+++ +|||+|+ |.+|.+++++|+++|+ +++++.+++++.+.+++
T Consensus 116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~ 188 (323)
T TIGR02823 116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKE 188 (323)
T ss_pred CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHh
Confidence 999999999888898876533 33478898 9999998 9999999999999999 77877777777776643
No 103
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=1.6e-23 Score=182.29 Aligned_cols=175 Identities=25% Similarity=0.313 Sum_probs=153.3
Q ss_pred eEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 11 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
|+++++..+.+ +++++.+.|.|.+++|+|++.++++|++|...+.+.... ..+|.++|||++|+|+.+|+++..|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 81 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV 81 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence 78888877653 888999999999999999999999999999988776532 246789999999999999999999999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
||+|..... + |+|++|+.++.+.++++|+++
T Consensus 82 Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~~p~~~ 112 (331)
T cd08273 82 GDRVAALTR-------------------------------V------------------GGNAEYINLDAKYLVPVPEGV 112 (331)
T ss_pred CCEEEEeCC-------------------------------C------------------cceeeEEEechHHeEECCCCC
Confidence 999985321 1 289999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++.+++.+.+++.++|+++.....++++++|+|+|+ |.+|++++++++.+|+ +|+++.+ +++.+.++
T Consensus 113 ~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~ 180 (331)
T cd08273 113 DAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALR 180 (331)
T ss_pred CHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHH
Confidence 999999999999999998877788999999999987 9999999999999998 8888887 77776654
No 104
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.91 E-value=2.6e-23 Score=179.23 Aligned_cols=182 Identities=29% Similarity=0.394 Sum_probs=156.2
Q ss_pred eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC-CCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
||++++..++.+ +++.++|.|.+.+++|+|+++++++|++|+....+... ...+|.++|||++|+|+++|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 578888766543 88899999999999999999999999999988877543 235788999999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+.... |.... .|++++|+.++.+.++++|++
T Consensus 81 ~Gd~v~~~~~--------------------------~~~~~------------------~g~~~~~~~~~~~~~~~ip~~ 116 (325)
T cd08253 81 VGDRVWLTNL--------------------------GWGRR------------------QGTAAEYVVVPADQLVPLPDG 116 (325)
T ss_pred CCCEEEEecc--------------------------ccCCC------------------CcceeeEEEecHHHcEeCCCC
Confidence 9999986532 00001 238999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++.+++.+.+++.++|+++.....+.+|++++|+|+ +.+|++++++++.+|+ .++++++++++.+.+.
T Consensus 117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 186 (325)
T cd08253 117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVR 186 (325)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 9999999999999999998877788999999999987 9999999999999998 8999998888877764
No 105
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.91 E-value=2.8e-23 Score=183.02 Aligned_cols=180 Identities=23% Similarity=0.267 Sum_probs=146.4
Q ss_pred eEEEEecCCCCeEEEeecCCCC---CCCeEEEEEeEeeechhhhhhhcCCCCCC-CCCeeeeeeEEEEEEEeCCCCC-CC
Q 026414 11 KAAVAWEPNKPLVIEDVQVAPP---QAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVT-EV 85 (239)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~---~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~Vv~vG~~v~-~~ 85 (239)
|++++++.+.++++++++.|.| ++++|+||+.++++|++|+..+.+..... ..|.++|+|++|+|+++|++++ .|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 81 (352)
T cd08247 2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW 81 (352)
T ss_pred ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence 6889999988888888888776 89999999999999999998775432211 2377899999999999999998 89
Q ss_pred CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc----eeE
Q 026414 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV----SVA 161 (239)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~ 161 (239)
++||+|+......|+ . .|+|++|+.++.. .++
T Consensus 82 ~~Gd~V~~~~~~~~~--------------------------~------------------~g~~~~~~~v~~~~~~~~~~ 117 (352)
T cd08247 82 KVGDEVCGIYPHPYG--------------------------G------------------QGTLSQYLLVDPKKDKKSIT 117 (352)
T ss_pred CCCCEEEEeecCCCC--------------------------C------------------CceeeEEEEEccccccceeE
Confidence 999999865321110 1 2389999999987 789
Q ss_pred ecCCCCCchhhhhcccccchhhhhhhhhc-CCCCCCEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhh
Q 026414 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRE 235 (239)
Q Consensus 162 ~~p~~~~~~~aa~l~~~~~ta~~~~~~~~-~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~ 235 (239)
++|+++++.+++.+++++.|+|+++.... .+++|+++||+|+ +.+|.+++++|+++|. +.++++.+ +++.+.+
T Consensus 118 ~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~-~~~~~~~ 193 (352)
T cd08247 118 RKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCS-SRSAELN 193 (352)
T ss_pred ECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeC-hhHHHHH
Confidence 99999999999999999999999886666 7999999999988 8999999999999854 35666654 4444444
No 106
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.91 E-value=3e-23 Score=178.49 Aligned_cols=177 Identities=29% Similarity=0.350 Sum_probs=153.6
Q ss_pred eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
||++++.+.+.+ +++.+.+.|.+.+++|+||++++++|+.|+....+..+. ..+|.++|||++|+|+++|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 789999875543 778888888889999999999999999999888775432 24578999999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+.... + |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~~p~~ 111 (323)
T cd05276 81 VGDRVCALLA-------------------------------G------------------GGYAEYVVVPAGQLLPVPEG 111 (323)
T ss_pred CCCEEEEecC-------------------------------C------------------CceeEEEEcCHHHhccCCCC
Confidence 9999974311 1 28999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++.+++.+..++.++|+++.....+.++++++|+|+ |.+|++++++++..|+ .++++++++++.+.+.
T Consensus 112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~ 181 (323)
T cd05276 112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACR 181 (323)
T ss_pred CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence 9999999999899999998877788999999999987 9999999999999999 7999998888777664
No 107
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=4.3e-23 Score=178.64 Aligned_cols=178 Identities=29% Similarity=0.397 Sum_probs=153.3
Q ss_pred eeEEEEecCC--CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 10 ~~a~~~~~~~--~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
|||+++.+++ +.++++++|.|++++++|+||++++++|++|+....+......+|.++|||++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~ 80 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV 80 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence 7999999988 35999999999999999999999999999999888776543344678999999999999999999999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
||+|...... . .+ ++|++|+.++...++++|+++
T Consensus 81 Gd~V~~~~~~---------------------------~-~~------------------~~~~s~~~~~~~~~~~ip~~~ 114 (325)
T cd08271 81 GDRVAYHASL---------------------------A-RG------------------GSFAEYTVVDARAVLPLPDSL 114 (325)
T ss_pred CCEEEeccCC---------------------------C-CC------------------ccceeEEEeCHHHeEECCCCC
Confidence 9999864320 0 12 389999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
+..+++.+.+.+.++++++.....+++|++++|+|+ |.+|+++++++++.|+ .++++. ++++.+.+
T Consensus 115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~ 181 (325)
T cd08271 115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYV 181 (325)
T ss_pred CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHH
Confidence 999999999999999998878888999999999998 8999999999999998 677665 55555554
No 108
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=7.1e-23 Score=176.96 Aligned_cols=181 Identities=29% Similarity=0.361 Sum_probs=153.8
Q ss_pred eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
|||+++.+++.+ +++++.+.|.+.+++|+|++.++++|++|.....+.... ...|.++|||++|+|+++|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 689999888765 888888888899999999999999999999887765431 23577899999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|..... |.... .|+|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~--------------------------~~~~~------------------~g~~~~~~~v~~~~~~~~p~~ 116 (326)
T cd08272 81 VGDEVYGCAG--------------------------GLGGL------------------QGSLAEYAVVDARLLALKPAN 116 (326)
T ss_pred CCCEEEEccC--------------------------CcCCC------------------CCceeEEEEecHHHcccCCCC
Confidence 9999985421 00001 238999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++.+++.+++.+.++|+++.....++++++++|+|+ |.+|++++++++.+|+ .++++++. ++.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~ 185 (326)
T cd08272 117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFAR 185 (326)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHH
Confidence 9999999998899999998878889999999999986 9999999999999999 78888877 7766654
No 109
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.90 E-value=1.2e-22 Score=175.28 Aligned_cols=166 Identities=27% Similarity=0.379 Sum_probs=138.5
Q ss_pred cCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhh-cCCCCC--CCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEee
Q 026414 17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPE--GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIP 93 (239)
Q Consensus 17 ~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~--~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~ 93 (239)
+++. +++++++.|++.++||+||+.++++|+.|+..+ .+.... ..+|.++|+|++|+|+++|++++++++||+|+.
T Consensus 3 ~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 81 (312)
T cd08269 3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG 81 (312)
T ss_pred CCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence 4444 999999999999999999999999999999887 665321 124778999999999999999999999999985
Q ss_pred cCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhh
Q 026414 94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC 173 (239)
Q Consensus 94 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa 173 (239)
.. .|+|++|+.++.+.++++|+++ ..++
T Consensus 82 ~~--------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~~ 109 (312)
T cd08269 82 LS--------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQA 109 (312)
T ss_pred ec--------------------------------------------------CCcceeeEEEchhheEECCCch--hhhH
Confidence 32 1389999999999999999988 2232
Q ss_pred hcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 174 LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 174 ~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
....++.++++++. ..++++++++||+|+|.+|.+++++|+.+|++.++++.+++++.+++.
T Consensus 110 ~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~ 171 (312)
T cd08269 110 FPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALAR 171 (312)
T ss_pred HhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 22257778888664 888999999999988999999999999999944999998888877654
No 110
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.90 E-value=1.2e-22 Score=176.08 Aligned_cols=166 Identities=23% Similarity=0.324 Sum_probs=146.2
Q ss_pred eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCC
Q 026414 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR 100 (239)
Q Consensus 22 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~ 100 (239)
+++++.|.|.+++++|+||++++++|+.|...+.+.... ..+|.++|||++|+|+++|++++++++||+|+..+.
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---- 89 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---- 89 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence 778888999999999999999999999999888765432 246789999999999999999999999999985421
Q ss_pred CCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccc
Q 026414 101 ECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180 (239)
Q Consensus 101 ~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ 180 (239)
+ |+|++|+.++...++++|+++++.+++.+.+...
T Consensus 90 ---------------------------~------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ 124 (323)
T cd05282 90 ---------------------------E------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL 124 (323)
T ss_pred ---------------------------C------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence 1 2899999999999999999999999999988999
Q ss_pred hhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 181 TGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 181 ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++|+++.....+.++++|||+|+ |.+|++++++|+++|+ .++++.+++++.+.+++
T Consensus 125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~ 181 (323)
T cd05282 125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKA 181 (323)
T ss_pred HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHh
Confidence 99998877788899999999988 9999999999999999 78888888888777653
No 111
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.90 E-value=3.4e-22 Score=171.70 Aligned_cols=176 Identities=33% Similarity=0.392 Sum_probs=151.3
Q ss_pred eEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (239)
Q Consensus 11 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 88 (239)
||+.+..++.+ +.+.+.+.+.++++||+|+|.++++|+.|+....+..+. .+|.++|||++|+|+.+|++++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G 79 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG 79 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence 46666655543 677788887789999999999999999999988776543 457789999999999999999999999
Q ss_pred CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (239)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~ 168 (239)
|+|.... . .|+|++|+.++.+.++++|++++
T Consensus 80 ~~V~~~~-------------------------------~------------------~g~~~~~~~~~~~~~~~~p~~~~ 110 (320)
T cd05286 80 DRVAYAG-------------------------------P------------------PGAYAEYRVVPASRLVKLPDGIS 110 (320)
T ss_pred CEEEEec-------------------------------C------------------CCceeEEEEecHHHceeCCCCCC
Confidence 9998531 0 12899999999999999999999
Q ss_pred chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
..+++.+.+...+++.++....++++|++|||+|+ |.+|++++++++.+|+ .++++++++++.+.+++
T Consensus 111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~ 179 (320)
T cd05286 111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARA 179 (320)
T ss_pred HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence 99999988899999998877888999999999996 9999999999999999 89999988888877643
No 112
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.89 E-value=5.9e-22 Score=171.17 Aligned_cols=182 Identities=33% Similarity=0.381 Sum_probs=153.5
Q ss_pred eeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
||++++...+. .+++.+.+.|.+++++++|++.++++|+.|+....+.... ..+|.++|||++|+|+.+|+++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 67888876554 3777888888899999999999999999999887665432 24467899999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+..+...+ . .+ |++++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~-------------------------~-~~------------------g~~~~~~~~~~~~~~~~p~~ 116 (328)
T cd08268 81 VGDRVSVIPAADL-------------------------G-QY------------------GTYAEYALVPAAAVVKLPDG 116 (328)
T ss_pred CCCEEEecccccc-------------------------C-CC------------------ccceEEEEechHhcEeCCCC
Confidence 9999986532100 0 12 38999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++.+++.+.+++.++|.++.....+.++++++|+|+ |.+|++++++++..|+ .++++++++++.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~ 186 (328)
T cd08268 117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALL 186 (328)
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence 9999999999999999998877888999999999988 9999999999999998 8888888887776653
No 113
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.89 E-value=3.4e-23 Score=153.34 Aligned_cols=108 Identities=37% Similarity=0.689 Sum_probs=93.3
Q ss_pred CCeEEEEEeEeeechhhhhhhcCC-CCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCC
Q 026414 34 AGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112 (239)
Q Consensus 34 ~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 112 (239)
|+||||||++++||++|++++.+. .....+|.++|||++|+|+++|+++++|++||+|++.+...|+.|.+|..+..+.
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 689999999999999999999983 4555899999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414 113 CGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (239)
Q Consensus 113 c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (239)
|.+... .|.. .+| +|+||+.+|.++++++
T Consensus 81 c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEV---LGLG-LDG------------------GFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEE---TTTS-STC------------------SSBSEEEEEGGGEEEE
T ss_pred CCCCCE---eEcC-CCC------------------cccCeEEEehHHEEEC
Confidence 976554 3333 445 9999999999999875
No 114
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.89 E-value=5.1e-22 Score=170.21 Aligned_cols=179 Identities=28% Similarity=0.345 Sum_probs=150.3
Q ss_pred eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTE 84 (239)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~ 84 (239)
||++++..++.. +++++.+.|.++++||+||+.++++|+.|+..+.+... ...+|.++|||++|+|+.+|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 678888876653 56778888889999999999999999999988877542 2345789999999999999999999
Q ss_pred CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (239)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 164 (239)
+++||+|...+.. + .+ |+|++|+.++...++++|
T Consensus 81 ~~~G~~V~~~~~~-------------------------~---~~------------------g~~~~~~~~~~~~~~~~p 114 (309)
T cd05289 81 FKVGDEVFGMTPF-------------------------T---RG------------------GAYAEYVVVPADELALKP 114 (309)
T ss_pred CCCCCEEEEccCC-------------------------C---CC------------------CcceeEEEecHHHhccCC
Confidence 9999999865320 0 12 389999999999999999
Q ss_pred CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++++..++.+.+.+.+++.++.....+.++++++|+|+ |.+|++++++++..|+ .++++.+++ +.+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~ 185 (309)
T cd05289 115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLR 185 (309)
T ss_pred CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHH
Confidence 999999999988889999998877677899999999997 9999999999999999 788777666 666553
No 115
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.89 E-value=1.1e-21 Score=169.36 Aligned_cols=177 Identities=29% Similarity=0.336 Sum_probs=151.9
Q ss_pred eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (239)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~ 86 (239)
||++.+..++.+ +++.+.+.|.+++++++|++.++++|+.|+....+.+.. ..+|.++|||++|+|+.+|+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 678888776554 777788777789999999999999999999888765432 23577999999999999999999999
Q ss_pred CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (239)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~ 166 (239)
+||+|+... .+ |+|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~-------------------------------~~------------------~~~~~~~~~~~~~~~~ip~~ 111 (325)
T TIGR02824 81 VGDRVCALV-------------------------------AG------------------GGYAEYVAVPAGQVLPVPEG 111 (325)
T ss_pred CCCEEEEcc-------------------------------CC------------------CcceeEEEecHHHcEeCCCC
Confidence 999997531 11 28999999999999999999
Q ss_pred CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++.+++.+.++..++|.++.....++++++++|+|+ |.+|.+++++++.+|+ +++++.+++++.+.+.
T Consensus 112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 181 (325)
T TIGR02824 112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACE 181 (325)
T ss_pred CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 9999999999999999998778889999999999987 9999999999999998 8888888888776653
No 116
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.88 E-value=1.8e-21 Score=168.03 Aligned_cols=166 Identities=28% Similarity=0.376 Sum_probs=142.0
Q ss_pred EEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCC
Q 026414 23 VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAEC 99 (239)
Q Consensus 23 ~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~ 99 (239)
++++.+.|.++++||+|+++++++|++|...+.+... ....|.++|||++|+|.++|+++.++++||+|+......
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~- 93 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPK- 93 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCC-
Confidence 7889999999999999999999999999998877542 123467899999999999999999999999998643210
Q ss_pred CCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhccccc
Q 026414 100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179 (239)
Q Consensus 100 ~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~ 179 (239)
. .|+|++|+.++.+.++++|++++..+++.+.+++
T Consensus 94 ---------------------------~------------------~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 128 (319)
T cd08267 94 ---------------------------G------------------GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAG 128 (319)
T ss_pred ---------------------------C------------------CceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence 1 1389999999999999999999999999999999
Q ss_pred chhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 180 PTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 180 ~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
.++|+++.....++++++|+|+|+ |.+|++++++++.+|+ ++++++++ ++.+.++
T Consensus 129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~ 184 (319)
T cd08267 129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVR 184 (319)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHH
Confidence 999998877777999999999998 9999999999999999 78887765 6655553
No 117
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.88 E-value=2.3e-21 Score=165.84 Aligned_cols=159 Identities=26% Similarity=0.354 Sum_probs=138.7
Q ss_pred CCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccC
Q 026414 29 VAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKS 107 (239)
Q Consensus 29 ~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~ 107 (239)
.|.+.+++|+||+.++++|+.|+..+.+.+.. ..+|.++|+|++|+|+++|+++.+|++||+|+.....
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~---------- 71 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE---------- 71 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence 57789999999999999999999988876432 2567899999999999999999999999999864220
Q ss_pred CCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhh
Q 026414 108 GKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187 (239)
Q Consensus 108 ~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~ 187 (239)
.+ |+|++|+.++.+.++++|+++++.+++.++.++.++|.++
T Consensus 72 -------------------~~------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l- 113 (303)
T cd08251 72 -------------------SM------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF- 113 (303)
T ss_pred -------------------CC------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence 12 3899999999999999999999999999998999999976
Q ss_pred hhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
....+++|++++|+|+ |.+|++++++++++|+ +++++++++++.+.++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 162 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLK 162 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence 6788999999999966 9999999999999999 8999988887777664
No 118
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.87 E-value=6.1e-21 Score=166.12 Aligned_cols=172 Identities=23% Similarity=0.223 Sum_probs=140.2
Q ss_pred eEEEEecCC------CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCC
Q 026414 11 KAAVAWEPN------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEG 81 (239)
Q Consensus 11 ~a~~~~~~~------~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~ 81 (239)
||+++.+.+ +.++++++|.|++.+++|+||+.++++|+.|.....+... +...+.++|+|++|+|+++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~ 82 (329)
T cd05288 3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP 82 (329)
T ss_pred cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence 566665333 2399999999999999999999999999988765544321 1123457899999999999964
Q ss_pred CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec-cee
Q 026414 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VSV 160 (239)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~ 160 (239)
++++||+|... ++|++|+.++. ..+
T Consensus 83 --~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~~ 108 (329)
T cd05288 83 --DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASGL 108 (329)
T ss_pred --CCCCCCEEecc----------------------------------------------------cceEEEEEecchhhc
Confidence 79999999731 17999999999 999
Q ss_pred EecCCCCC--chhhhh-cccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 161 AKIDPQAP--LDKVCL-LGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 161 ~~~p~~~~--~~~aa~-l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++|++++ +.+++. +.+++.|+|+++.....+.++++|||+|+ |.+|++++++++.+|+ +++++++++++.+.++
T Consensus 109 ~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~ 187 (329)
T cd05288 109 RKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLV 187 (329)
T ss_pred EECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 99999985 445555 88899999998877788899999999986 9999999999999999 8999998888877765
Q ss_pred h
Q 026414 237 W 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 188 ~ 188 (329)
T cd05288 188 E 188 (329)
T ss_pred h
Confidence 4
No 119
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.87 E-value=3.7e-21 Score=169.05 Aligned_cols=166 Identities=30% Similarity=0.397 Sum_probs=134.0
Q ss_pred eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC----CCCeeeeeeEEEEEEEeCCC----CCCCCCCCEEee
Q 026414 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG----LFPCILGHEAAGIVESVGEG----VTEVQPGDHVIP 93 (239)
Q Consensus 22 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~----~~p~~~G~e~vG~Vv~vG~~----v~~~~~Gd~V~~ 93 (239)
...++.++|.|++++++|++.++++|+.|+.++.+.+... .+|.+++.++.|.+...+.. +..+..||.+..
T Consensus 20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~ 99 (347)
T KOG1198|consen 20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA 99 (347)
T ss_pred EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence 5568899999999999999999999999999999987544 36755666555554333322 223444544432
Q ss_pred cCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhh
Q 026414 94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC 173 (239)
Q Consensus 94 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa 173 (239)
+...|+|+||+++|...++++|+++++.++|
T Consensus 100 -------------------------------------------------~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa 130 (347)
T KOG1198|consen 100 -------------------------------------------------FLSSGGLAEYVVVPEKLLVKIPESLSFEEAA 130 (347)
T ss_pred -------------------------------------------------ccCCCceeeEEEcchhhccCCCCccChhhhh
Confidence 2223499999999999999999999999999
Q ss_pred hcccccchhhhhhhhhc------CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 174 LLGCGVPTGLGAVWNTA------KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 174 ~l~~~~~ta~~~~~~~~------~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.++.++.|||.+++... +.++|++|||+|+ |++|++++|+|++.|+ ..+++..++++++++++
T Consensus 131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~ 200 (347)
T KOG1198|consen 131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKK 200 (347)
T ss_pred cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHH
Confidence 99999999999999999 8999999999976 9999999999999996 66666667888887764
No 120
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.87 E-value=1.3e-20 Score=162.24 Aligned_cols=176 Identities=34% Similarity=0.454 Sum_probs=148.6
Q ss_pred eeEEEEecCCC--CeEEEeecCCCCC-CCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414 10 CKAAVAWEPNK--PLVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV 85 (239)
Q Consensus 10 ~~a~~~~~~~~--~~~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~ 85 (239)
|||+++..++. .+++.+.+ |.+. +++++|++.++++|++|+....+.... ...|.++|||++|+|+.+|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 67888874443 27777887 7666 599999999999999999888776432 2346689999999999999999999
Q ss_pred CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (239)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~ 165 (239)
++||+|+.... + |++++|+.++.+.++++|+
T Consensus 80 ~~G~~V~~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~ip~ 110 (323)
T cd08241 80 KVGDRVVALTG-------------------------------Q------------------GGFAEEVVVPAAAVFPLPD 110 (323)
T ss_pred CCCCEEEEecC-------------------------------C------------------ceeEEEEEcCHHHceeCCC
Confidence 99999985420 1 2899999999999999999
Q ss_pred CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+++..+++.+..+..+|+.++.....++++++++|+|+ |.+|++++++++..|+ .++++++++++.+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALAR 181 (323)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHH
Confidence 99988888888899999988776788999999999998 9999999999999999 7899988888877664
No 121
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.85 E-value=5.7e-20 Score=159.82 Aligned_cols=158 Identities=26% Similarity=0.351 Sum_probs=136.3
Q ss_pred eEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414 11 KAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (239)
Q Consensus 11 ~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 87 (239)
|++++...+. .+.+.+.+.|.+.+++|+||+.++++|+.|...+.+.... ...|.++|||++|+|+.+|+.+.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 80 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV 80 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence 4556655443 3788888888899999999999999999999988776432 245778999999999999999999999
Q ss_pred CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (239)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~ 167 (239)
||+|+.... + |+|++|+.++.+.++++|+++
T Consensus 81 G~~V~~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~ip~~~ 111 (337)
T cd08275 81 GDRVMGLTR-------------------------------F------------------GGYAEVVNVPADQVFPLPDGM 111 (337)
T ss_pred CCEEEEecC-------------------------------C------------------CeeeeEEEecHHHeEECCCCC
Confidence 999985321 1 289999999999999999999
Q ss_pred CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q 026414 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA 217 (239)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~ 217 (239)
++.+++.+.+++.++|+++.....++++++|+|+|+ |.+|++++++++.+
T Consensus 112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~ 162 (337)
T cd08275 112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV 162 (337)
T ss_pred CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc
Confidence 999999998899999998878888999999999998 99999999999999
No 122
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.85 E-value=1.9e-20 Score=158.47 Aligned_cols=150 Identities=27% Similarity=0.268 Sum_probs=132.7
Q ss_pred CeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCC
Q 026414 35 GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG 114 (239)
Q Consensus 35 ~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~ 114 (239)
+||+||+.++++|++|+....+..+ .+|.++|||++|+|+++|+++..+++||+|....
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~------------------- 59 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLP--GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA------------------- 59 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCC--CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence 5899999999999999998877642 4578999999999999999999999999997531
Q ss_pred CcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCC
Q 026414 115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP 194 (239)
Q Consensus 115 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~ 194 (239)
.|+|++|+.++...++++|+++++.+++.+.++..+++.++.....+++
T Consensus 60 -------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 108 (293)
T cd05195 60 -------------------------------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK 108 (293)
T ss_pred -------------------------------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence 1289999999999999999999999999998899999998877788999
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 195 g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
|++++|+|+ |.+|++++++++.+|+ +++++.+++++.+.+++
T Consensus 109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~ 151 (293)
T cd05195 109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRE 151 (293)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 999999975 9999999999999999 88888888877776643
No 123
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=152.19 Aligned_cols=163 Identities=25% Similarity=0.307 Sum_probs=132.0
Q ss_pred CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeC--CCCCCCCCCCEEeecCccC
Q 026414 21 PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG--EGVTEVQPGDHVIPCYQAE 98 (239)
Q Consensus 21 ~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG--~~v~~~~~Gd~V~~~~~~~ 98 (239)
+|+++|.++|+|+++|||||+++.++++.... +....+..-.|.-+|-..+|.++... +....|++||.|+..
T Consensus 26 ~F~lee~~vp~p~~GqvLl~~~ylS~DPymRg-rm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~---- 100 (340)
T COG2130 26 DFRLEEVDVPEPGEGQVLLRTLYLSLDPYMRG-RMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV---- 100 (340)
T ss_pred CceeEeccCCCCCcCceEEEEEEeccCHHHee-cccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec----
Confidence 39999999999999999999999999884433 22222333456667776666555543 445679999999732
Q ss_pred CCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc--hhhhhcc
Q 026414 99 CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL--DKVCLLG 176 (239)
Q Consensus 99 ~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~--~~aa~l~ 176 (239)
. +|++|...+.+.+.+++++.-+ .....+.
T Consensus 101 --------------------------~----------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLG 132 (340)
T COG2130 101 --------------------------S----------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLG 132 (340)
T ss_pred --------------------------c----------------------cceEEEeechhhceecCCCCCCcchHHhhcC
Confidence 1 7999999999999999865322 2333467
Q ss_pred cccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 177 CGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 177 ~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.+..|||.++++..++|+|++|+|.+| |++|..+.|+||..|+ +||.+..+++|.+.+++
T Consensus 133 mpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~ 193 (340)
T COG2130 133 MPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTE 193 (340)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHH
Confidence 799999999999999999999999987 9999999999999999 99999999999999876
No 124
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.83 E-value=1.8e-19 Score=152.57 Aligned_cols=145 Identities=27% Similarity=0.317 Sum_probs=128.9
Q ss_pred EEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCC
Q 026414 39 IKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118 (239)
Q Consensus 39 Vkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~ 118 (239)
||+.++++|++|+....+..+ .|.++|||++|+|+++|++++.|++||+|....
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------------------- 55 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------------------- 55 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence 899999999999999877643 356899999999999999999999999997431
Q ss_pred CCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEE
Q 026414 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV 198 (239)
Q Consensus 119 ~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~v 198 (239)
+ |+|++|+.++.+.++++|+++++.+++.+.+++.+++.++.....+++|++|
T Consensus 56 ---------~------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v 108 (288)
T smart00829 56 ---------P------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV 108 (288)
T ss_pred ---------C------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence 1 2899999999999999999999999999998999999987778889999999
Q ss_pred EEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 199 AVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 199 lI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+|+|+ |.+|++++++++..|+ +++++++++++.+.+++
T Consensus 109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~ 147 (288)
T smart00829 109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRE 147 (288)
T ss_pred EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 99986 9999999999999999 89999988888877643
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.73 E-value=3.9e-17 Score=139.04 Aligned_cols=127 Identities=34% Similarity=0.432 Sum_probs=111.1
Q ss_pred CCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCcccccc
Q 026414 56 GKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI 135 (239)
Q Consensus 56 g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~ 135 (239)
|.++. ++|.++|||++|+|+++|+++++|++||+|+..
T Consensus 14 ~~~~~-~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~----------------------------------------- 51 (277)
T cd08255 14 GTEKL-PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF----------------------------------------- 51 (277)
T ss_pred cCccC-cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------
Confidence 33443 488999999999999999999999999999742
Q ss_pred CCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHH
Q 026414 136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAK 215 (239)
Q Consensus 136 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~ 215 (239)
+.|++|+.++...++++|+++++.+++.+ .++.++|+++ ...++++++++||+|+|.+|++++++|+
T Consensus 52 -----------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~ 118 (277)
T cd08255 52 -----------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAK 118 (277)
T ss_pred -----------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 15889999999999999999999898888 7899999976 5788999999999988999999999999
Q ss_pred HcCCCeEEEEcCChhhHhhhhh
Q 026414 216 AAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 216 ~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++|++++++++++++|.+++++
T Consensus 119 ~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 119 AAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred HcCCCcEEEECCCHHHHHHHHH
Confidence 9999449999999998886654
No 126
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.57 E-value=9.5e-15 Score=139.68 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=135.1
Q ss_pred eEEEeecCCC---CCCCeEEEEEeEeeechhhhhhhcCCCCCCCCC-------eeeeeeEEEEEEEeCCCCCCCCCCCEE
Q 026414 22 LVIEDVQVAP---PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP-------CILGHEAAGIVESVGEGVTEVQPGDHV 91 (239)
Q Consensus 22 ~~~~~~~~p~---~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p-------~~~G~e~vG~Vv~vG~~v~~~~~Gd~V 91 (239)
+++.|.|... ..++.=+-.|.|+.||..|+....|+.+....| +++|-|++|| .+-|.||
T Consensus 1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence 7777777662 367777889999999999999999987655444 7899999998 4569999
Q ss_pred eecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchh
Q 026414 92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK 171 (239)
Q Consensus 92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~ 171 (239)
-.... .. ++++-+.++.+++|.+|++-..++
T Consensus 1499 M~mvp-------------------------------Ak------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVP-------------------------------AK------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred EEeee-------------------------------hh------------------hhhhhhhcchhhhhhCCcccchhh
Confidence 53211 11 678888899999999999999999
Q ss_pred hhhcccccchhhhhhhhhcCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhcC
Q 026414 172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY 239 (239)
Q Consensus 172 aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~-G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~~ 239 (239)
|+..++.+.|+|+|+..+...|+|+++||+ |+|++|++||.+|.+.|+ +|+-++.+.+|++.+...|
T Consensus 1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rF 1597 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRF 1597 (2376)
T ss_pred cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhc
Confidence 999999999999999999999999999999 569999999999999999 9999999999999886544
No 127
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.57 E-value=1.1e-13 Score=116.46 Aligned_cols=160 Identities=25% Similarity=0.273 Sum_probs=117.4
Q ss_pred EEeecCC-CCCCCeEEEEEeEeeechhhhhhhcCCCCCC--CCCeeee----eeEEEEEEEeCCCCCCCCCCCEEeecCc
Q 026414 24 IEDVQVA-PPQAGEVRIKILFTALCHTDAYTWSGKDPEG--LFPCILG----HEAAGIVESVGEGVTEVQPGDHVIPCYQ 96 (239)
Q Consensus 24 ~~~~~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~--~~p~~~G----~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~ 96 (239)
..+++.+ ++++++||||.++.+..+...- +.+...+. -.|+.+| ..++|+|++. +-.++++||.|..
T Consensus 26 ~~~~el~~~~~s~~vlvknlYLS~DPymR~-rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g--- 99 (343)
T KOG1196|consen 26 TTTVELRVPLGSGEVLVKNLYLSCDPYMRI-RMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWG--- 99 (343)
T ss_pred eeeecccCCCCCccEEeEeeeecCCHHHHh-hccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEE---
Confidence 3444444 4589999999999999765432 22221111 1222222 2679999995 4567999999952
Q ss_pred cCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCC--CCCchh-
Q 026414 97 AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDP--QAPLDK- 171 (239)
Q Consensus 97 ~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~--~~~~~~- 171 (239)
.. +|.+|.+++.. ..++++. +.++..
T Consensus 100 ---------------------------~~----------------------gWeeysii~~~~~~~~ki~~~~~~pLs~y 130 (343)
T KOG1196|consen 100 ---------------------------IV----------------------GWEEYSVITPNDLEHFKIQHPTDVPLSYY 130 (343)
T ss_pred ---------------------------ec----------------------cceEEEEecCcchhcccCCCCCccCHhhh
Confidence 22 79999999764 3445443 333222
Q ss_pred hhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhcC
Q 026414 172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY 239 (239)
Q Consensus 172 aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~~ 239 (239)
...+.++.+|||...++...+++|++|+|-|| |++|.++.|+|+.+|+ .||....+++|.++++.+|
T Consensus 131 lg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~ 198 (343)
T KOG1196|consen 131 LGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKF 198 (343)
T ss_pred hhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhcc
Confidence 23367789999999999999999999999988 9999999999999999 9999999999999998654
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.55 E-value=0.00019 Score=66.48 Aligned_cols=45 Identities=31% Similarity=0.343 Sum_probs=42.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
..++++|+|+|+|.+|+++++.|+.+|+ .|+++|.+++|++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 5689999999999999999999999999 89999999999998865
No 129
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.16 E-value=0.0013 Score=59.48 Aligned_cols=54 Identities=26% Similarity=0.406 Sum_probs=45.2
Q ss_pred hhhhhhhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 183 LGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 183 ~~~~~~~~~-~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+.++.+..+ ..+|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.|++.+..
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM 243 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence 444544444 4689999999999999999999999999 89999999998887754
No 130
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.01 E-value=1.5e-05 Score=72.40 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=81.2
Q ss_pred eeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeec
Q 026414 65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM 144 (239)
Q Consensus 65 ~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~ 144 (239)
..-|.|+++.+.+|+.+++. .|++.+.. ||-|.+| ...|..... .|.. .++
T Consensus 88 ~~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~-l~~--------------- 138 (417)
T TIGR01035 88 ILTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKV-LER--------------- 138 (417)
T ss_pred hcCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHH-HHH---------------
Confidence 35688999999999998776 55555555 7777777 333443222 2222 233
Q ss_pred CCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhh---hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCe
Q 026414 145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA---VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR 221 (239)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~---~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~ 221 (239)
.|++++.++. .+.. .-.++ ..+.+.++.+ ........++++++|+|+|.+|.++++.++..|+..
T Consensus 139 ---lf~~a~~~~k-~vr~-~t~i~-------~~~vSv~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~ 206 (417)
T TIGR01035 139 ---LFQKAFSVGK-RVRT-ETDIS-------AGAVSISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGK 206 (417)
T ss_pred ---HHHHHHHHhh-hhhh-hcCCC-------CCCcCHHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCE
Confidence 7887777654 2221 00111 1111122222 223334467899999999999999999999999769
Q ss_pred EEEEcCChhhHh
Q 026414 222 VIGIDIDPKKFD 233 (239)
Q Consensus 222 vv~~~~~~~~~~ 233 (239)
|++++++.++.+
T Consensus 207 V~v~~rs~~ra~ 218 (417)
T TIGR01035 207 ILIANRTYERAE 218 (417)
T ss_pred EEEEeCCHHHHH
Confidence 999999988755
No 131
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.98 E-value=0.002 Score=49.21 Aligned_cols=45 Identities=27% Similarity=0.279 Sum_probs=40.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
-++.+++|+|+|..|.+++..+...|+++++++.++.+|.+.+.+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~ 54 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAE 54 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence 368999999999999999999999999889999999998776654
No 132
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.96 E-value=0.00071 Score=59.04 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=57.9
Q ss_pred ceeEecCCCCCchhhhhcccccchhhhhhhhhcC---CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK---VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (239)
Q Consensus 158 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~---~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~ 234 (239)
+.++++|+.+..+.++... +.+.++.++..... -.++.+|+|+|+|.+|.++++.++..|...|++++++.+|.+.
T Consensus 139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE 217 (311)
T ss_pred HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 4667778888877777654 55566665422221 2478999999999999999999999887799999999887643
Q ss_pred h
Q 026414 235 E 235 (239)
Q Consensus 235 ~ 235 (239)
+
T Consensus 218 l 218 (311)
T cd05213 218 L 218 (311)
T ss_pred H
Confidence 3
No 133
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.92 E-value=0.0038 Score=52.73 Aligned_cols=82 Identities=26% Similarity=0.305 Sum_probs=53.4
Q ss_pred eeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 149 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 149 ~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
|.+|.. +...++.+++.+++..+.--. +.. ....+. ...+++++||-+|.|. |.+++.+++ .|..+++++|.+
T Consensus 79 ~~~~~~-~~~~~i~i~p~~afgtg~h~t-t~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis 151 (250)
T PRK00517 79 WEDPPD-PDEINIELDPGMAFGTGTHPT-TRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDID 151 (250)
T ss_pred CcCCCC-CCeEEEEECCCCccCCCCCHH-HHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECC
Confidence 444433 567778888888766543211 110 111121 2256889999999987 887776554 677679999999
Q ss_pred hhhHhhhhh
Q 026414 229 PKKFDREFW 237 (239)
Q Consensus 229 ~~~~~~~~~ 237 (239)
+..++.+++
T Consensus 152 ~~~l~~A~~ 160 (250)
T PRK00517 152 PQAVEAARE 160 (250)
T ss_pred HHHHHHHHH
Confidence 988887754
No 134
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.53 E-value=0.0057 Score=56.71 Aligned_cols=44 Identities=32% Similarity=0.380 Sum_probs=40.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.++++++|+|+|.+|+++++.++.+|+ .|++++.++++++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 467999999999999999999999999 79999999999887764
No 135
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.26 E-value=0.014 Score=52.99 Aligned_cols=53 Identities=32% Similarity=0.432 Sum_probs=42.5
Q ss_pred hhhhhhhhcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 182 GLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 182 a~~~~~~~~~~~-~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
.|.++....++. .|++|+|.|.|.+|..+++.++.+|+ +|++++.++.|...+
T Consensus 198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A 251 (425)
T PRK05476 198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQA 251 (425)
T ss_pred hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHH
Confidence 345454443444 89999999999999999999999999 899999888775443
No 136
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.14 E-value=0.0058 Score=55.66 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=43.5
Q ss_pred ccchhhhhhhhhc---CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 178 GVPTGLGAVWNTA---KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 178 ~~~ta~~~~~~~~---~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
+.+.++.++.... ...++++++|+|+|.+|.++++.++..|+..+++++++.++.+
T Consensus 162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 162 AVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE 220 (423)
T ss_pred CcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 4445555542221 2367899999999999999999999999888999999988865
No 137
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.10 E-value=0.02 Score=51.79 Aligned_cols=52 Identities=29% Similarity=0.452 Sum_probs=41.6
Q ss_pred hhhhhhhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 183 LGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 183 ~~~~~~~~~-~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
+.++.+..+ ...|++|+|.|.|.+|..+++.++.+|+ +|++++.++.|...+
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A 234 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEA 234 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHH
Confidence 344444434 4689999999999999999999999999 899998888765443
No 138
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.93 E-value=0.018 Score=51.55 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLD 207 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH
Confidence 34569999999999999999999999 8999999988876654
No 139
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.84 E-value=0.023 Score=48.93 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=41.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~ 238 (239)
..+++++|+|+|+.+.+++..+...|+++++++.++.+|.+.+.+.
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 4589999999999999999999999988999999999998777654
No 140
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=95.70 E-value=0.01 Score=30.87 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=16.1
Q ss_pred eeEEEEecCCCCeEEEeecCCCC
Q 026414 10 CKAAVAWEPNKPLVIEDVQVAPP 32 (239)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~ 32 (239)
|||++++++++ ++++++|.|.+
T Consensus 1 MkAv~y~G~~~-v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD-VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE-EEEEEE----S
T ss_pred CcceEEeCCCc-eEEEECCCccc
Confidence 89999999999 99999999975
No 141
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.67 E-value=0.039 Score=47.58 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=38.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
..+.+++|+|+|+.|.+++..+...|++++++++++.+|.+.+.
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 35679999999999999999999999989999999998877654
No 142
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.66 E-value=0.035 Score=43.91 Aligned_cols=41 Identities=37% Similarity=0.400 Sum_probs=34.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
..+|+|+|+|.+|..|+.+++.+|+ ++++.+...++++...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~ 60 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLE 60 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhh
Confidence 3788999999999999999999999 9999999888766554
No 143
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.63 E-value=0.047 Score=46.77 Aligned_cols=46 Identities=26% Similarity=0.191 Sum_probs=39.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
...+++++|+|+|+.+.+++..+..+|+.+++++.++++|.+.+.+
T Consensus 119 ~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~ 164 (272)
T PRK12550 119 VPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAE 164 (272)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 3445689999999999999999999999889999999988776543
No 144
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.55 E-value=0.05 Score=47.17 Aligned_cols=41 Identities=34% Similarity=0.413 Sum_probs=36.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
.+.+++|+|.|.+|..+++.++.+|+ +|++++++.++.+.+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~ 191 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARI 191 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 68999999999999999999999998 999999998765544
No 145
>PLN02494 adenosylhomocysteinase
Probab=95.55 E-value=0.044 Score=50.32 Aligned_cols=52 Identities=35% Similarity=0.467 Sum_probs=41.9
Q ss_pred hhhhhhhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 183 LGAVWNTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 183 ~~~~~~~~~~-~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
+.++.+..++ ..|++++|.|.|.+|...++.++.+|+ +|++++.++.+...+
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA 293 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQA 293 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHH
Confidence 4445455443 679999999999999999999999999 899999888764433
No 146
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.47 E-value=0.035 Score=47.78 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=38.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
.+.+++|+|+|+.+.+++..+..+|+++++++.++.+|.+.+.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV 166 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 5789999999999999999999999989999999988876654
No 147
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.37 E-value=0.043 Score=47.08 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=38.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
..+.+++|+|+|.+|.+++..+...|+.+|+++.++.++.+.+.+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~ 165 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK 165 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 456899999999999999999999997699999999988765543
No 148
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.35 E-value=0.046 Score=46.48 Aligned_cols=48 Identities=29% Similarity=0.550 Sum_probs=40.2
Q ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChhhHhhhhh
Q 026414 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDREFW 237 (239)
Q Consensus 189 ~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~-~vv~~~~~~~~~~~~~~ 237 (239)
...++++++||.+|.|. |..+.++++..|.. +|+++|.+++.++.+++
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~ 120 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence 45688999999999987 88888888887753 69999999998888764
No 149
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.31 E-value=0.056 Score=44.11 Aligned_cols=44 Identities=39% Similarity=0.470 Sum_probs=38.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
-.|.+++|+|.|.+|..+++.+...|+ +|++++.++++.+.+.+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAE 69 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 467899999999999999999999999 89999999887766543
No 150
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.24 E-value=0.065 Score=46.16 Aligned_cols=44 Identities=25% Similarity=0.229 Sum_probs=38.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
..+.+++|+|+|+.+.+++..+...|+++++++.++.+|.+.+.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 34789999999999999999888899989999999988876654
No 151
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.82 E-value=0.06 Score=50.85 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
..+.|++|+|+|+|+.|+++++.++..|+ +|++++..
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~ 169 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG 169 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 46789999999999999999999999999 78888854
No 152
>PRK08324 short chain dehydrogenase; Validated
Probab=94.78 E-value=0.064 Score=51.86 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=51.9
Q ss_pred ceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026414 148 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID 226 (239)
Q Consensus 148 ~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~ 226 (239)
++++|..++...++.+ +..+.+++..... ......+|+++||+|+ |.+|...++.+...|+ +|++++
T Consensus 386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~ 453 (681)
T PRK08324 386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD 453 (681)
T ss_pred hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence 4556666666666655 4444444432100 0122346899999987 9999999999999998 899999
Q ss_pred CChhhHhhh
Q 026414 227 IDPKKFDRE 235 (239)
Q Consensus 227 ~~~~~~~~~ 235 (239)
++.++++.+
T Consensus 454 r~~~~~~~~ 462 (681)
T PRK08324 454 LDEEAAEAA 462 (681)
T ss_pred CCHHHHHHH
Confidence 988776544
No 153
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.50 E-value=0.13 Score=41.07 Aligned_cols=41 Identities=44% Similarity=0.605 Sum_probs=35.5
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
--.|.+|.|+|.|.+|...++.++.+|+ +|++.++.....+
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEE 73 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhh
Confidence 3468999999999999999999999999 9999999887644
No 154
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.47 E-value=0.14 Score=44.17 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..+.+++|+|+|++|.+++..+...|+++|+++.+++
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3568899999999999988888899997799999886
No 155
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.34 E-value=0.12 Score=48.72 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=39.2
Q ss_pred hhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~ 234 (239)
...+.+.|+++||+|+ |.+|...++.+...|+ +|++++++.++.+.
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~ 119 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAES 119 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence 4556778999999988 9999999999989998 89999988877653
No 156
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.25 E-value=0.12 Score=44.56 Aligned_cols=41 Identities=34% Similarity=0.441 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
.|++++|+|.|.+|.+++..++.+|+ +|+++++++++.+.+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~ 190 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARI 190 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 57899999999999999999999998 999999988765443
No 157
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.01 E-value=0.13 Score=45.00 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=35.8
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
+.|.++||+|+ +++|...+..+...|+ +|+.+++++++++.+
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~ 93 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDV 93 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence 35899999998 9999998888878898 899999999887654
No 158
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.16 Score=42.51 Aligned_cols=44 Identities=32% Similarity=0.445 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEcC-C-HHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 191 KVEPGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 191 ~~~~g~~vlI~G~-g-~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
...+++++||+|+ | ++|.+.++.+...|+ +|+++++++++++..
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~ 58 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGET 58 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 3445789999987 6 799999999999998 788888887765543
No 159
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.76 E-value=0.32 Score=37.34 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=35.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
..+.+++|+|+|.+|...++.+...|...+++++++.++.+.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~ 59 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKAL 59 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence 4568899999999999999988888755899999988776554
No 160
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.68 E-value=0.24 Score=45.03 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=39.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
--.+.++||+|+|.+|.+++..+...|+..++++.++.+|.+.+.+
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~ 223 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITS 223 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3467899999999999999999999998899999999887665543
No 161
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.67 E-value=0.19 Score=43.26 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=34.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
.+.++||+|+ |.+|...++.+...|+ +|+++++++++++.+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV 80 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 4578999988 9999999998888998 899999988776544
No 162
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.62 E-value=0.28 Score=42.34 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
.+.++||+|+|+.+.+++..+...|+++++++.++++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 5679999999988988777777789989999999853
No 163
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=93.52 E-value=0.31 Score=44.93 Aligned_cols=40 Identities=38% Similarity=0.546 Sum_probs=35.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~ 232 (239)
.-.|++++|+|.|.+|...++.++.+|+ +|+++++++.+.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a 290 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICA 290 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhH
Confidence 4589999999999999999999999999 899998776654
No 164
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.43 E-value=0.34 Score=38.39 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=40.5
Q ss_pred hhcccccchhhhhhhhhcCCCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414 173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKF 232 (239)
Q Consensus 173 a~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~-~g~~ai~~~~~~G~~~vv~~~~~~~~~ 232 (239)
...++...++...+.....--.+.++||+|+|. +|..++..++..|+ +|+++.++.+.+
T Consensus 22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l 81 (168)
T cd01080 22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNL 81 (168)
T ss_pred CccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhH
Confidence 334443333333333333446889999999986 59989999999999 788888775444
No 165
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=93.34 E-value=0.41 Score=41.22 Aligned_cols=44 Identities=32% Similarity=0.426 Sum_probs=34.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.+++++||-+|.|. |.+++.+++ .|..+++++|.++..++.+++
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~ 200 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK 200 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence 45789999999877 777776665 577799999999987776653
No 166
>PRK06196 oxidoreductase; Provisional
Probab=93.23 E-value=0.23 Score=42.99 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=34.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
.+.++||+|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~ 66 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREA 66 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4679999988 9999999998888998 889999888766543
No 167
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.11 E-value=0.34 Score=41.31 Aligned_cols=43 Identities=26% Similarity=0.222 Sum_probs=36.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
...+.+++|+|+|.+|.+++..+...|+ .+++++++++|.+.+
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l 156 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL 156 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 3457899999999999999988888898 899999988776544
No 168
>PRK04148 hypothetical protein; Provisional
Probab=93.03 E-value=0.27 Score=37.47 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=34.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.++.+++++|.| .|...+..+..+|. .|+++|.+++..+.+++
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~ 57 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKK 57 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence 456789999999 88755666668898 99999999998876654
No 169
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.72 E-value=0.29 Score=40.72 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID 228 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~--~vv~~~~~ 228 (239)
-.+.+++|+|+|..|..++..+...|++ ++++++++
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4667999999999999999999999998 89999998
No 170
>PRK06197 short chain dehydrogenase; Provisional
Probab=92.70 E-value=0.27 Score=42.30 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=33.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
.+.++||+|+ |.+|...++.+...|+ +|+++.++.++.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~ 54 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGK 54 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 5689999988 9999999998888898 8888888876644
No 171
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.16 E-value=0.43 Score=38.39 Aligned_cols=41 Identities=29% Similarity=0.375 Sum_probs=34.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
.+.+++|+|+ |.+|...+..+...|. +|+++.++.++.+.+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l 68 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKA 68 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 5689999987 9999988888888887 899998888776544
No 172
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=91.96 E-value=0.38 Score=45.20 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
.+.++||+|+|++|.+++..+...|+ +|+++.++.+|.+.+.
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la 419 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELA 419 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 46789999999999999999999999 8999999887766554
No 173
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=91.89 E-value=0.46 Score=38.39 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=40.4
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~ 237 (239)
....+.++++||-+|+|. |..++.+++..+ ..+|++++.+++.++.+++
T Consensus 34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~ 83 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRR 83 (198)
T ss_pred HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 556788999999999977 888888888765 2489999999998887654
No 174
>PLN02253 xanthoxin dehydrogenase
Probab=91.76 E-value=0.49 Score=39.99 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=32.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
.+.++||+|+ |.+|...++.+...|+ +|+++++++++.+
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~ 56 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQ 56 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence 4678999988 9999998888888998 8888888765543
No 175
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=91.63 E-value=0.54 Score=31.98 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=29.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~ 231 (239)
+++|+|+|.+|+-.+..+..+|. +|+.+.+++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchh
Confidence 57889999999999999999998 88888887753
No 176
>PLN00203 glutamyl-tRNA reductase
Probab=91.61 E-value=0.38 Score=45.02 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=37.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
.+.+|+|+|+|.+|.+++..+...|+..|+++.++.++.+.+.
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La 307 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALR 307 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Confidence 3689999999999999999999999878999999988876654
No 177
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=91.51 E-value=0.39 Score=43.20 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=43.5
Q ss_pred hhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 181 ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
..+..+.....++++++||-+|.| .|..+..+++..|+ +|++++.+++.++.+++
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~ 208 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQE 208 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 334445677788999999999874 45667788888888 99999999998888765
No 178
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.28 E-value=0.66 Score=36.55 Aligned_cols=42 Identities=36% Similarity=0.509 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
..-.|++++|.|=|.+|...++.++.+|+ +|++++.++-+.-
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~al 60 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRAL 60 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHH
Confidence 35689999999999999999999999999 9999999886543
No 179
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.21 E-value=0.14 Score=37.07 Aligned_cols=35 Identities=34% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.|.+|||.|+|.++..-++.+...|+ +|++++...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence 57899999999999999999999998 888888773
No 180
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.91 E-value=0.85 Score=31.95 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=33.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcC---CCeEE-EEcCChhhHhhhhhc
Q 026414 197 IVAVFGLGTVGLAVAEGAKAAG---ASRVI-GIDIDPKKFDREFWS 238 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~G---~~~vv-~~~~~~~~~~~~~~~ 238 (239)
++.|+|.|.+|.+.+.-+...| . +++ +.+++++|.+.+.+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~ 45 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKE 45 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHh
Confidence 4677899999999998888888 6 677 559999988777543
No 181
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.84 E-value=0.54 Score=39.65 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
..+-.+++|.|+|.++...+++++.+|+ +|+++|..++
T Consensus 97 ~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~ 134 (246)
T TIGR02964 97 APPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA 134 (246)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence 4677899999999999999999999999 9999887765
No 182
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=90.67 E-value=0.5 Score=40.47 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=34.8
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+.++.++++|++||-+|.| -|..+..+++..|+ +|+++..+++..+.+++
T Consensus 54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~ 103 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARE 103 (273)
T ss_dssp HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHH
Confidence 5688899999999999886 45556677777798 99999999988887754
No 183
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.58 E-value=0.89 Score=33.02 Aligned_cols=39 Identities=33% Similarity=0.538 Sum_probs=32.9
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 198 vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++|.|.|.+|...++.++..+. ++++++.++++.+.+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~ 39 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELRE 39 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHh
Confidence 5788999999999999999665 99999999988887764
No 184
>PRK06484 short chain dehydrogenase; Validated
Probab=90.53 E-value=0.67 Score=43.01 Aligned_cols=43 Identities=35% Similarity=0.388 Sum_probs=36.5
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
..++++||+|+ +++|...++.+...|+ +|+++++++++++.+.
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~ 310 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLA 310 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 46789999988 9999999998889998 9999999887766543
No 185
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.27 E-value=1.3 Score=36.68 Aligned_cols=37 Identities=35% Similarity=0.395 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
-.|.+++|.|-|.+|..+++++...|.+.|.++|++.
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 4688999999999999999999999986677777766
No 186
>PRK06720 hypothetical protein; Provisional
Probab=90.02 E-value=1.1 Score=35.50 Aligned_cols=39 Identities=31% Similarity=0.282 Sum_probs=32.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
.+.+++|+|+ +++|...+..+...|+ +|++++++++..+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~ 54 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ 54 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 5789999988 8899998888888898 8999988776543
No 187
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=90.01 E-value=0.79 Score=41.59 Aligned_cols=39 Identities=33% Similarity=0.541 Sum_probs=33.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
.+++++|+|+ |.+|.+.+..+...|+ +|+++++++++++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~ 216 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKIT 216 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 4679999988 9999999988888998 8888888776654
No 188
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=89.90 E-value=0.91 Score=32.50 Aligned_cols=42 Identities=38% Similarity=0.549 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHhhhhh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
|+++||-+|+|. |..++.+++ ..++ ++++++.+++-++.+++
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~ 43 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARE 43 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHH
Confidence 678999888754 555566666 4676 99999999998888765
No 189
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=89.78 E-value=0.87 Score=37.99 Aligned_cols=41 Identities=27% Similarity=0.143 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (239)
Q Consensus 191 ~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~ 232 (239)
.-..+.++||+|+ |.+|...+..+...|. .|+++.++.++.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~ 54 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKA 54 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHH
Confidence 3334679999998 9999999988888898 888888777654
No 190
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=89.77 E-value=1.2 Score=32.34 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=38.0
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
....+++++++|-+|.|. |..+..+++..+..+++++|.++...+.+++
T Consensus 13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 61 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIER 61 (124)
T ss_pred HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHH
Confidence 444567788888888866 8888888887654599999999988777653
No 191
>PRK14982 acyl-ACP reductase; Provisional
Probab=89.66 E-value=0.88 Score=40.28 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=35.7
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~-g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~ 236 (239)
-.+.+|+|+|+ |.+|...++.+.. .|...++.+.++++++..+.
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La 198 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ 198 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence 46789999999 9999988888864 57779999999888776654
No 192
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.39 E-value=1.1 Score=36.61 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.+.+|+|.|.|++|..+++.+..+|+.+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 45789999999999999999999999899999977
No 193
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.17 E-value=0.5 Score=41.13 Aligned_cols=44 Identities=27% Similarity=0.275 Sum_probs=38.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhcC
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY 239 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~~ 239 (239)
..+|.|+|.|.+|.-++.+|.-+|+ +|++.+.+.+|++.+.+.|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f 211 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF 211 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh
Confidence 3466777999999999999999999 9999999999998887654
No 194
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.11 E-value=0.98 Score=39.53 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=37.2
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
-.+.+++|+|+ +++|...+..+-..|+ +|+...++.++.+.+.+
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~~ 77 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAKE 77 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHH
Confidence 34578899998 9999999999999997 99999999877766643
No 195
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=89.10 E-value=1.5 Score=40.32 Aligned_cols=35 Identities=34% Similarity=0.352 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE-EEcCC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDID 228 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv-~~~~~ 228 (239)
-.|.+|+|.|.|.+|..+++.+..+|+ +|+ +.|++
T Consensus 235 l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~~ 270 (454)
T PTZ00079 235 LEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDSD 270 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcCC
Confidence 478999999999999999999999999 666 66665
No 196
>PRK08328 hypothetical protein; Provisional
Probab=88.89 E-value=0.96 Score=37.71 Aligned_cols=36 Identities=39% Similarity=0.461 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|.|+|++|..++..+...|..+++.+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999999999999999999999999998654
No 197
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=88.84 E-value=1.4 Score=39.97 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=40.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
-.+.++||+|+|-+|.+++..+...|...++++-++.+|.+.+.+
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~ 220 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK 220 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 477899999999999999999999998899999999988776544
No 198
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.78 E-value=0.81 Score=44.09 Aligned_cols=36 Identities=33% Similarity=0.455 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..+.+|+|+|+|+.|+.++..+...|+ +|++++..+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 358899999999999999999999999 788888754
No 199
>PLN02686 cinnamoyl-CoA reductase
Probab=88.69 E-value=1.2 Score=39.75 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=31.1
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (239)
Q Consensus 193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~ 231 (239)
..+++|||+|+ |.+|...+..+...|+ .|+++.++.++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~ 89 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQED 89 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence 45789999988 9999999999999998 78776665544
No 200
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=88.67 E-value=1.6 Score=40.56 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
.+.+++|+|+|.+|.+++..+...|+ .++++++++++.+.+
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~l 371 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEAL 371 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 56789999999999999999999998 888888888776654
No 201
>PLN02928 oxidoreductase family protein
Probab=88.40 E-value=0.99 Score=40.05 Aligned_cols=35 Identities=20% Similarity=0.454 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
-.|.++.|+|.|.+|..+++.++.+|+ +|++++++
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~ 191 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS 191 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence 357899999999999999999999999 99999876
No 202
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=88.10 E-value=1.1 Score=29.64 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=25.6
Q ss_pred EEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 200 VFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 200 I~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
|+|+|..|+.++..++..|. +|.++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecCcc
Confidence 67999999999999999998 9999987763
No 203
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=88.06 E-value=1.2 Score=38.63 Aligned_cols=42 Identities=31% Similarity=0.305 Sum_probs=35.2
Q ss_pred CCCCEEEEEcC-CHHHHH-HHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGL-GTVGLA-VAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~-g~~g~~-ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+.|+|.+|+|+ .++|.. |-++|+ .|+ +|+.+.++++|++..+
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~ 90 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVA 90 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHH
Confidence 45799999999 899977 555665 999 8999999999998775
No 204
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.60 E-value=1 Score=37.79 Aligned_cols=36 Identities=33% Similarity=0.465 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|.|+|++|..+++.+...|..+++.+|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 347899999999999999999999999999998665
No 205
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=87.48 E-value=1.2 Score=41.14 Aligned_cols=36 Identities=42% Similarity=0.582 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
+.+++|+|+|+|+.|+.++..++..|+ .|++++..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 367899999999999999999999999 788887654
No 206
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=87.22 E-value=1.5 Score=42.58 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=34.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~ 234 (239)
.+.++||+|+ |.+|...++.+...|+ +|++++++.++.+.
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~ 453 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEA 453 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHH
Confidence 4789999988 9999999998888998 89999988776544
No 207
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=87.18 E-value=1.3 Score=41.66 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=35.7
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
-.|++|||+|+ |++|.-.+.-....+.++++.+++++.++....
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~ 292 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLID 292 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHH
Confidence 46899999988 999987665555669889999999998876553
No 208
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.16 E-value=1.6 Score=32.94 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=30.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..+|+|.|+|++|...+..+-..|+.+++.+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 46899999999999999999999999999998765
No 209
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.98 E-value=1.2 Score=42.01 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=37.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++|.|.|.+|...++.++..|. .++++|.++++.+.+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRE 458 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH
Confidence 688999999999999999999998 99999999999887764
No 210
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.81 E-value=2.3 Score=29.38 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
-++.+++|.|.|.+|..+++.+...|..++.+.++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46789999999999999999999986657777765
No 211
>PRK07201 short chain dehydrogenase; Provisional
Probab=86.67 E-value=1.6 Score=41.66 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=34.0
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 195 g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
+.++||+|+ |.+|...+..+...|+ +|+++++++++++.+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 411 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDEL 411 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 678999988 9999999988888998 899999988775543
No 212
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=86.64 E-value=1.9 Score=33.67 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~ 226 (239)
.|.+|||.|+|.+|.--++.+...|+ .|++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence 57899999999999998888888998 777774
No 213
>PRK05855 short chain dehydrogenase; Validated
Probab=86.54 E-value=1.7 Score=40.44 Aligned_cols=41 Identities=32% Similarity=0.451 Sum_probs=34.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
.+.++||+|+ |.+|...++.+...|. +|+++++++++++.+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~ 355 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERT 355 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4578999988 9999998888888999 799999988776543
No 214
>PRK14967 putative methyltransferase; Provisional
Probab=86.54 E-value=2.5 Score=34.73 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=37.2
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
....++++++||-.|+|. |..++.+++. |..++++++.+++.++.+++
T Consensus 30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL 77 (223)
T ss_pred HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence 344577889999999977 8777777765 65699999999988776543
No 215
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=86.50 E-value=3.9 Score=35.52 Aligned_cols=74 Identities=27% Similarity=0.382 Sum_probs=43.8
Q ss_pred cceeEecCCCCCchhhhhcccccchhhhhhhhh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 157 ~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
....+++.+.+.+ .......|++. +... ...++|.+||=+|.|+ |.++|..+ .+|+.+++++|.++-..+.+
T Consensus 129 ~~~~i~lDPGlAF----GTG~HpTT~lc-L~~Le~~~~~g~~vlDvGcGS-GILaIAa~-kLGA~~v~g~DiDp~AV~aa 201 (300)
T COG2264 129 DELNIELDPGLAF----GTGTHPTTSLC-LEALEKLLKKGKTVLDVGCGS-GILAIAAA-KLGAKKVVGVDIDPQAVEAA 201 (300)
T ss_pred CceEEEEcccccc----CCCCChhHHHH-HHHHHHhhcCCCEEEEecCCh-hHHHHHHH-HcCCceEEEecCCHHHHHHH
Confidence 3566777666533 22233334433 2222 2356888988777632 55554444 46887999999998766665
Q ss_pred hh
Q 026414 236 FW 237 (239)
Q Consensus 236 ~~ 237 (239)
++
T Consensus 202 ~e 203 (300)
T COG2264 202 RE 203 (300)
T ss_pred HH
Confidence 53
No 216
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=86.48 E-value=2.6 Score=38.10 Aligned_cols=37 Identities=35% Similarity=0.461 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
-+|.+|.|.|.|.+|..+++.+..+|+ +|++++.+..
T Consensus 205 l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g 241 (411)
T COG0334 205 LEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG 241 (411)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence 489999999999999999999999999 7777776654
No 217
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=86.23 E-value=1.6 Score=38.14 Aligned_cols=35 Identities=37% Similarity=0.491 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.|.++.|+|-|.+|...++.++.+|+ +|++.++..
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~ 178 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSG 178 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCc
Confidence 68899999999999999999999999 999998753
No 218
>PRK13243 glyoxylate reductase; Reviewed
Probab=86.19 E-value=1.6 Score=38.40 Aligned_cols=36 Identities=33% Similarity=0.532 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++.+
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~ 184 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK 184 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC
Confidence 57899999999999999999999999 8999987654
No 219
>PRK07985 oxidoreductase; Provisional
Probab=86.03 E-value=1.7 Score=37.22 Aligned_cols=34 Identities=24% Similarity=0.101 Sum_probs=28.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.+.++||+|+ |.+|...++.+...|+ +|+++.++
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~ 82 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLP 82 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCC
Confidence 5679999988 9999999999989998 77777643
No 220
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.86 E-value=1.5 Score=42.23 Aligned_cols=35 Identities=37% Similarity=0.455 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+++|+|+|+|+.|+.++..++..|. .|++++..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 48999999999999999999999999 788888765
No 221
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.86 E-value=1.9 Score=37.23 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=31.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
.|+.|||+|+ +++|.+.++-...+|+ +++..|.+++-.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~ 76 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNE 76 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchH
Confidence 6899999987 8999887766667888 8888888875443
No 222
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=85.71 E-value=1.9 Score=36.25 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|+|.|+|++|..++..+...|..+++++|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 457999999999999999999999998999998654
No 223
>PRK06128 oxidoreductase; Provisional
Probab=85.67 E-value=1.9 Score=36.99 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=28.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.+.++||+|+ |.+|...+..+...|+ +|+++.++
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~ 88 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLP 88 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 5689999988 9999999988888998 77776544
No 224
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.58 E-value=2.1 Score=39.09 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=30.3
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.++.++||+|+ |.+|...++.+...|+ +|+++++.
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~ 243 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVP 243 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35789999988 9999999999999998 88888764
No 225
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=85.57 E-value=1.8 Score=38.71 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999999999999999999999999999987
No 226
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=85.50 E-value=1.9 Score=38.82 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=34.5
Q ss_pred hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414 189 TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (239)
Q Consensus 189 ~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~ 231 (239)
+.+...+.+|||+|+ |.+|...+..+...|. .|++++++..+
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~ 96 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG 96 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh
Confidence 344556779999988 9999999999999998 88888887643
No 227
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.39 E-value=2.4 Score=36.24 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 192 ~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.-++.++||+|+ |.+|...+..+...|+ +|+.+.+++
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~ 80 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE 80 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 335789999988 9999998888888998 788877664
No 228
>PRK07574 formate dehydrogenase; Provisional
Probab=85.30 E-value=2.1 Score=38.54 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.|.+|.|+|.|.+|...++.++.+|+ +|++.++..
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~ 225 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHR 225 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCC
Confidence 57899999999999999999999999 999999875
No 229
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.29 E-value=2.2 Score=37.25 Aligned_cols=47 Identities=28% Similarity=0.216 Sum_probs=39.6
Q ss_pred cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 190 ~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
...++...++|+|. .++|++.+..++..|+ .|.++.++.+|+..+++
T Consensus 28 ~~~k~~~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~ 75 (331)
T KOG1210|consen 28 VKPKPRRHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKA 75 (331)
T ss_pred cccCccceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHh
Confidence 33456688999966 9999999999999998 99999999999887754
No 230
>PRK06436 glycerate dehydrogenase; Provisional
Probab=85.15 E-value=2 Score=37.39 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~ 155 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY 155 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 68999999999999999999999999 999998753
No 231
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=85.05 E-value=2 Score=37.83 Aligned_cols=33 Identities=48% Similarity=0.741 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
.|.||-|+|.|.+|...++.++.+|+ +|++.++
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~ 173 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP 173 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence 37899999999999999999999999 9999998
No 232
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=85.01 E-value=2.1 Score=34.87 Aligned_cols=35 Identities=37% Similarity=0.541 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
...+|+|.|+|++|...++.+...|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 44789999999999999999999999889999987
No 233
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.99 E-value=2.6 Score=38.38 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
....+++|.|.|.+|...++.+...|. .+++++.++++.+.+.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAE 272 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHH
Confidence 346889999999999999999999998 89999999988776543
No 234
>PRK06932 glycerate dehydrogenase; Provisional
Probab=84.87 E-value=1.8 Score=37.85 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.|.+|.|+|-|.+|...++.++.+|+ +|++.++..
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~ 180 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKG 180 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCc
Confidence 57899999999999999999999999 888887643
No 235
>PRK12831 putative oxidoreductase; Provisional
Probab=84.80 E-value=2 Score=39.58 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+..|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~~ 173 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEALH 173 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 4568899999999999999999999998 888887543
No 236
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=84.80 E-value=1.9 Score=41.41 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=37.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.++++|.|.|.+|...++.++..|. +++++|.++++.+.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRK 441 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh
Confidence 4689999999999999999999998 89999999999887764
No 237
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.63 E-value=2.4 Score=37.33 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~ 231 (239)
.|.+|.|+|.|.+|...++.++..|. +|++.++++++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~ 181 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNK 181 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhH
Confidence 56789999999999999999999998 99999987654
No 238
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=84.61 E-value=2.1 Score=37.36 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
.|.+|.|+|.|.+|...++.++..|+ +|+++++..+
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~ 170 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRK 170 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 67899999999999999999999999 8988887654
No 239
>PRK06487 glycerate dehydrogenase; Provisional
Probab=84.51 E-value=2 Score=37.55 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.|.++.|+|-|.+|...++.++.+|+ +|++.++.
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~ 180 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLP 180 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence 57899999999999999999999999 89988865
No 240
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=84.39 E-value=3.4 Score=34.34 Aligned_cols=34 Identities=38% Similarity=0.466 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE-EEcC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDI 227 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv-~~~~ 227 (239)
-.+.+++|.|-|.+|..+++++...|+ +|+ +.|+
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~-~vv~v~D~ 63 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGA-KVVAVSDS 63 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 367899999999999999999999999 777 5555
No 241
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=84.17 E-value=2.2 Score=37.75 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|.|+|++|..++..+..+|..+++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 447899999999999999999999998999998764
No 242
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.15 E-value=2.4 Score=35.17 Aligned_cols=36 Identities=33% Similarity=0.340 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|.|.|++|..++..+..+|..+++.+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 357899999999999999999999999999997654
No 243
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=84.08 E-value=3.3 Score=36.60 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=34.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~ 231 (239)
-.+.++||+|+|-+|.+++..+...|+.+++++.++.++
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~ 210 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT 210 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 468899999999999999999999998789999888644
No 244
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=84.02 E-value=2 Score=41.39 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
+.+++|+|+|+|+.|+.++..+...|. +|++++.++.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~ 227 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQ 227 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 457899999999999999999999998 8888887653
No 245
>PLN03139 formate dehydrogenase; Provisional
Probab=83.99 E-value=2.5 Score=38.17 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~ 232 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLK 232 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 67899999999999999999999999 899998764
No 246
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=83.97 E-value=3.5 Score=36.27 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=39.8
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~ 237 (239)
+.....++++++||.+|+| .|..++.+++..+. ..|++++.+++.++.+++
T Consensus 72 ll~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~ 123 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 123 (322)
T ss_pred HHHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 3355678899999999997 48888888988763 369999999987766653
No 247
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=83.96 E-value=2.1 Score=37.20 Aligned_cols=44 Identities=39% Similarity=0.569 Sum_probs=29.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.++|++||=.|.| .|.+++..++ +|+++|+++|.++.-.+.+++
T Consensus 159 ~~~g~~vLDvG~G-SGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~ 202 (295)
T PF06325_consen 159 VKPGKRVLDVGCG-SGILAIAAAK-LGAKKVVAIDIDPLAVEAARE 202 (295)
T ss_dssp SSTTSEEEEES-T-TSHHHHHHHH-TTBSEEEEEESSCHHHHHHHH
T ss_pred ccCCCEEEEeCCc-HHHHHHHHHH-cCCCeEEEecCCHHHHHHHHH
Confidence 6788888877652 1334443333 588899999999877666543
No 248
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=83.94 E-value=2.1 Score=39.43 Aligned_cols=36 Identities=36% Similarity=0.477 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
+.+.+|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 457899999999999999999999998 788887653
No 249
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=83.90 E-value=4.7 Score=34.74 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=42.9
Q ss_pred hhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 182 a~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++..+....++++|.+||=+|.|- |.+++.+|+..|+ +|++++-+++..+.+++
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEK 113 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHH
Confidence 344567889999999999997743 4456677777798 99999999998887764
No 250
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=83.89 E-value=2.4 Score=37.50 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|+|.|+|++|..++..+...|..+++.+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 447899999999999999999999999999999763
No 251
>PRK14031 glutamate dehydrogenase; Provisional
Probab=83.87 E-value=2.4 Score=38.91 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
-.|.+|+|.|.|.+|..+++++...|+ +|+++..
T Consensus 226 l~g~rVaVQGfGNVG~~aA~~L~e~GA-kVVaVSD 259 (444)
T PRK14031 226 LKGKVCLVSGSGNVAQYTAEKVLELGG-KVVTMSD 259 (444)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 478999999999999999999999999 7776443
No 252
>PRK00811 spermidine synthase; Provisional
Probab=83.80 E-value=2.1 Score=36.86 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~ 238 (239)
.+.++||++|+|. |..+..+++..+..+|++++.+++-.+.++++
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~ 119 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKY 119 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHH
Confidence 3457899998754 55566667766777999999999988888764
No 253
>PRK06141 ornithine cyclodeaminase; Validated
Probab=83.46 E-value=3.2 Score=36.18 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=35.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHhhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~~~~~~~~~ 236 (239)
.+...+++|+|+|..|...+..+. ..+..+|.+..+++++.+.+.
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a 167 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA 167 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 356789999999999999876444 467779999999988866554
No 254
>PRK07340 ornithine cyclodeaminase; Validated
Probab=83.37 E-value=3.4 Score=35.92 Aligned_cols=44 Identities=18% Similarity=0.042 Sum_probs=36.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~ 236 (239)
....+++|+|+|..|.+.+..+.. .+.+++.+.+++++|.+.+.
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a 167 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFC 167 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 466899999999999998888864 68889999999998866544
No 255
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=83.36 E-value=3.9 Score=34.69 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
-+|.+|+|.|-|.+|..+++++..+|+ +|+++..
T Consensus 36 l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVsD 69 (254)
T cd05313 36 LKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLSD 69 (254)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 468899999999999999999999999 7775543
No 256
>PRK08618 ornithine cyclodeaminase; Validated
Probab=83.28 E-value=3.8 Score=35.95 Aligned_cols=45 Identities=16% Similarity=0.023 Sum_probs=35.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEcCChhhHhhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~-~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
.+...+++|+|+|..+...+..+ ...+++.|.+++++++|.+.+.
T Consensus 124 ~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~ 169 (325)
T PRK08618 124 REDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFA 169 (325)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence 34668899999999998777554 4678889999999988876543
No 257
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=83.22 E-value=2.4 Score=40.51 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=37.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.+.++|.|.|.+|...++.++..|. .++++|.++++.+.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRK 441 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh
Confidence 3678889999999999999999998 99999999999887754
No 258
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=83.11 E-value=2.7 Score=34.57 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
...+|+|.|+|++|...++.+...|..+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45789999999999999999999999889999877
No 259
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.09 E-value=1.1 Score=40.85 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=34.0
Q ss_pred hhcCCCCCCEEE----EEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 188 NTAKVEPGSIVA----VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 188 ~~~~~~~g~~vl----I~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
...++++|+.+| |+|+ |.+|.+++++++..|+ .|+++...+.
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~ 73 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGL 73 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCcccc
Confidence 455677888887 7765 9999999999999999 8888766554
No 260
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.94 E-value=5.6 Score=34.36 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=38.6
Q ss_pred hcccccchhhhhhhhhcC-CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 174 LLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 174 ~l~~~~~ta~~~~~~~~~-~~~g~~vlI~G~g~-~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
.++|+...... ++...+ --.|.+++|+|.|. +|.-.+.++...|+ +|+++.+...
T Consensus 137 ~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~ 193 (286)
T PRK14175 137 FVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSK 193 (286)
T ss_pred CCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCch
Confidence 34554444343 334443 35799999999955 99999999999998 7777776543
No 261
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=82.74 E-value=2 Score=38.56 Aligned_cols=34 Identities=38% Similarity=0.546 Sum_probs=29.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
-.|+|+|+|..|++++..+...|. +|.++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence 458899999999998888888999 8999987654
No 262
>PRK08223 hypothetical protein; Validated
Probab=82.71 E-value=2.5 Score=36.47 Aligned_cols=36 Identities=31% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|.|+|++|..+++.+-.+|..++..+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 457899999999999999999999999999998664
No 263
>PRK13984 putative oxidoreductase; Provisional
Probab=82.57 E-value=2.7 Score=40.08 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+++|+|+|+|..|+.++..++..|. +|++++..+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~ 316 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS 316 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 4678899999999999999999999998 888887654
No 264
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=82.39 E-value=2.8 Score=35.83 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|.|.|++|..++..+-..|..+++.+|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 567899999999999999999999988999998663
No 265
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=82.31 E-value=2.9 Score=33.91 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|+|.|+|++|.-.+..+-..|..++..+|...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 457899999999999999999999999999998664
No 266
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=82.17 E-value=3.7 Score=36.02 Aligned_cols=44 Identities=23% Similarity=0.165 Sum_probs=36.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+...+++|+|+|..+.+.+..+. ..+++++.+..++.+|.+.+.
T Consensus 127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a 171 (326)
T TIGR02992 127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALA 171 (326)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHH
Confidence 45678999999999988887776 578889999999998866543
No 267
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.15 E-value=3 Score=37.89 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.|.++.|+|.|.+|...++.++.+|. +|++.++..
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~ 184 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED 184 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence 67899999999999999999999999 999998753
No 268
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=81.87 E-value=2.9 Score=37.20 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=30.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.+.+|||+|+ |.+|...+..+...|. .|+++++.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEec
Confidence 5688999988 9999999999999998 88888764
No 269
>PRK08291 ectoine utilization protein EutC; Validated
Probab=81.78 E-value=4.1 Score=35.78 Aligned_cols=45 Identities=22% Similarity=0.048 Sum_probs=35.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+...+++|+|+|..+.+.+..+.. .+++.|.+..++++|.+.+.+
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~ 175 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAA 175 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence 445789999999999987777764 678899999999988776543
No 270
>PRK14030 glutamate dehydrogenase; Provisional
Probab=81.78 E-value=3.2 Score=38.14 Aligned_cols=32 Identities=38% Similarity=0.542 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~ 225 (239)
-.|.+|+|.|-|.+|..+++++..+|+ +|+++
T Consensus 226 l~g~~vaIQGfGnVG~~aA~~L~e~Ga-kvVav 257 (445)
T PRK14030 226 IKGKTVAISGFGNVAWGAATKATELGA-KVVTI 257 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence 468999999999999999999999999 77774
No 271
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.77 E-value=2.7 Score=40.34 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|||+|+|++|-.+++.+-..|+++++.+|...
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 478999999999999999999999999999998654
No 272
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=81.69 E-value=1.8 Score=31.75 Aligned_cols=36 Identities=11% Similarity=0.351 Sum_probs=30.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~ 232 (239)
++|||.|.|.++.-+++.++.+|. +++++.+++++.
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi-~tv~v~s~~d~~ 38 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGI-ETVAVNSNPDTV 38 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTS-EEEEEEEGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHHhCC-cceeccCchhcc
Confidence 589999999999999999999999 777777777664
No 273
>PRK08317 hypothetical protein; Provisional
Probab=81.62 E-value=4.3 Score=32.99 Aligned_cols=51 Identities=29% Similarity=0.380 Sum_probs=39.7
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~ 237 (239)
+.....++++++||-+|+|. |..+..+++..+ ..++++++.+++.++.+++
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~ 62 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKE 62 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Confidence 34667788999999998866 778888888763 3489999999987776643
No 274
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.58 E-value=3.1 Score=37.01 Aligned_cols=36 Identities=31% Similarity=0.296 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|||.|+|++|..++..+-..|..+++.+|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 457999999999999999999999999999998765
No 275
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=81.25 E-value=3.2 Score=37.36 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
--.|.+|.|+|.|.+|...++.++.+|+ +|++.+...
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp~~ 149 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDPPR 149 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCcc
Confidence 3478999999999999999999999999 999988643
No 276
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=81.22 E-value=3.4 Score=38.36 Aligned_cols=36 Identities=36% Similarity=0.489 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..+.+|+|+|+|..|+.++..++..|. .|++++..+
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~ 176 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERED 176 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 456899999999999999999999998 788887553
No 277
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=81.11 E-value=4.7 Score=29.08 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.0
Q ss_pred EEEEEEeCCCCC----CCCCCCEEeec
Q 026414 72 AGIVESVGEGVT----EVQPGDHVIPC 94 (239)
Q Consensus 72 vG~Vv~vG~~v~----~~~~Gd~V~~~ 94 (239)
.|.|+++|++.. .+++||+|+..
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~ 72 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLLP 72 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEEc
Confidence 499999999854 39999999854
No 278
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=81.05 E-value=2.9 Score=35.42 Aligned_cols=33 Identities=30% Similarity=0.301 Sum_probs=27.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
-.|+|.|+|+.|++++..+...|. +|+++++..
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~ 58 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKL 58 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 457888999999998888888998 888888654
No 279
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=80.99 E-value=3.3 Score=37.15 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|+|+|++|..++..+...|..+++.+|.+.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 457899999999999999999999998999998764
No 280
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=80.79 E-value=2.9 Score=42.21 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..|.+|+|+|+|+-|+.|+..+...|. .|++++..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC
Confidence 358999999999999999999999999 899988654
No 281
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=80.77 E-value=3.9 Score=35.98 Aligned_cols=37 Identities=35% Similarity=0.568 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
-.|+++.|+|.|.+|.+.++.++..|+ +|+..++...
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~ 180 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN 180 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC
Confidence 358999999999999999999999998 9999998864
No 282
>PLN02206 UDP-glucuronate decarboxylase
Probab=80.70 E-value=3.4 Score=37.94 Aligned_cols=33 Identities=36% Similarity=0.384 Sum_probs=29.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
++.+|||+|+ |.+|...+..+...|. +|+++++
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 5688999988 9999999999999998 8888864
No 283
>PLN02366 spermidine synthase
Probab=80.67 E-value=3.4 Score=36.09 Aligned_cols=45 Identities=22% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~ 238 (239)
.+.++||++|.|. |..+..+++.-+..+|++++.+++-.+.++++
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~ 134 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKF 134 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHh
Confidence 4568999998765 45566777777767899999998877777664
No 284
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=80.56 E-value=3.5 Score=37.83 Aligned_cols=36 Identities=33% Similarity=0.348 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..+.+|+|+|+|..|+.++..++..|. +|++++..+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~~ 166 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEALH 166 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 456899999999999999999999998 888887653
No 285
>PLN02572 UDP-sulfoquinovose synthase
Probab=80.54 E-value=3.1 Score=38.10 Aligned_cols=33 Identities=30% Similarity=0.260 Sum_probs=28.5
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026414 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID 226 (239)
Q Consensus 193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~ 226 (239)
.++.+|||+|+ |.+|...++.+...|. .|++++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d 78 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVD 78 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEe
Confidence 35578999988 9999999999999998 888876
No 286
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=80.41 E-value=3 Score=35.25 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=28.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
-.|+|+|+|+.|++++..+...|. +|++++++.
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~ 54 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSL 54 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 347888999999999988888998 888888764
No 287
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=80.38 E-value=3.7 Score=36.16 Aligned_cols=37 Identities=35% Similarity=0.372 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+.+|+|+|+|..|+.++..+...|. +++++++.+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~ 51 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLP 51 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 4567899999999999999999999998 888888754
No 288
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=79.93 E-value=4.1 Score=36.66 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
--.|.+|.|+|.|.+|...++.++.+|+ +|++.++.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp~ 148 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDPP 148 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCc
Confidence 3478999999999999999999999999 99998854
No 289
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=79.63 E-value=3.9 Score=35.31 Aligned_cols=36 Identities=33% Similarity=0.435 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|||.|.|++|.-++..+-..|...+..+|...
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 457899999999999999999999999999998664
No 290
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=79.58 E-value=4 Score=33.13 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|.|.|++|.-.++.+-..|..+++.+|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 347899999999999999999999998999998653
No 291
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=79.32 E-value=3.5 Score=41.73 Aligned_cols=36 Identities=33% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 457899999999999999999999998 888888654
No 292
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.03 E-value=7.7 Score=31.89 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=38.3
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+.....++++++||=+|+| .|..++-+++..| +|+.+++.++-.+.++
T Consensus 64 m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~--~V~siEr~~~L~~~A~ 111 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG--RVVSIERIEELAEQAR 111 (209)
T ss_pred HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC--eEEEEEEcHHHHHHHH
Confidence 5577789999999999875 3788888888887 8999998887555554
No 293
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=79.03 E-value=3.9 Score=35.74 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=35.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
--.+.-|+|.|+|++|..++..+...|++++-++|-.+-.+.
T Consensus 71 kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSls 112 (430)
T KOG2018|consen 71 KLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLS 112 (430)
T ss_pred HhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHh
Confidence 345688889999999999999999999999999987664443
No 294
>PLN02735 carbamoyl-phosphate synthase
Probab=78.97 E-value=3.5 Score=42.27 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=37.3
Q ss_pred ccchhhhhhhhhcCCCCCCEEEEEcCCHH-----------HHHHHHHHHHcCCCeEEEEcCChh
Q 026414 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTV-----------GLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 178 ~~~ta~~~~~~~~~~~~g~~vlI~G~g~~-----------g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
...-||.+......-+.=.+|||+|+|.+ |..++..++.+|+ .|+.++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~-~Vi~vd~np~ 68 (1102)
T PLN02735 6 TVTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVVLINSNPA 68 (1102)
T ss_pred cceecccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCC-EEEEEeCCcc
Confidence 44456765533333333469999999874 5568999999999 9999998774
No 295
>PLN02306 hydroxypyruvate reductase
Probab=78.90 E-value=4.1 Score=36.73 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~~ 229 (239)
.|.+|.|+|.|.+|...++.++ .+|+ +|++.++..
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~ 199 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCC
Confidence 5789999999999999999975 8999 999998764
No 296
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=78.70 E-value=4.4 Score=36.72 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=37.1
Q ss_pred hhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 026414 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID 228 (239)
Q Consensus 181 ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~--~vv~~~~~ 228 (239)
..++++....+.-..-+|++.|+|+-|.+.+.+.++.|.+ +++++|+.
T Consensus 185 ~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 185 ALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred HHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 3455554444444566778889999999999999999987 89999876
No 297
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=78.63 E-value=3.5 Score=39.92 Aligned_cols=37 Identities=35% Similarity=0.293 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.++..+|+|.|+|..|++++..++..|+ +|.++++.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi-~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGF-DVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEeccc
Confidence 4677789999999999999999999999 899998764
No 298
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=78.61 E-value=4.5 Score=37.01 Aligned_cols=35 Identities=29% Similarity=0.237 Sum_probs=30.0
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
++.-+|||+|+ |.+|...+..+...|. .|+++++.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 34568999988 9999999999999998 89988864
No 299
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=78.59 E-value=3.2 Score=39.01 Aligned_cols=33 Identities=39% Similarity=0.485 Sum_probs=28.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
-.|+|.|+|+.|++++..+...|. +|+++++.+
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~ 56 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDD 56 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence 468999999999998888888999 888888775
No 300
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=78.38 E-value=4 Score=39.41 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhh
Q 026414 192 VEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKK 231 (239)
Q Consensus 192 ~~~g~~vlI~G~-g~~g~~ai~~~~~~-G~~~vv~~~~~~~~ 231 (239)
.+++.+|||+|+ |.+|...++.+... |. .|+++++....
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-~V~~l~r~~~~ 352 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNY-EVYGLDIGSDA 352 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCc-EEEEEeCCchh
Confidence 567889999988 99999999888875 67 89988876543
No 301
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=78.33 E-value=3.5 Score=34.70 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|+|.|.|++|.+++..+-..|+.++..+|-++
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 457899999999999999999999999999988654
No 302
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=78.25 E-value=4.5 Score=40.83 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
..+.+|+|+|+|+-|+.++..+...|. .|++++..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccc
Confidence 468899999999999999999999999 99999864
No 303
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=77.89 E-value=4.2 Score=36.69 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|||.|+|++|..++..+-.+|..+++.+|.+.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 457899999999999999999999999999998654
No 304
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=77.67 E-value=4.5 Score=37.06 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..+.+|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARD 173 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Confidence 456789999999999999998888998 888887654
No 305
>PRK07411 hypothetical protein; Validated
Probab=77.29 E-value=4.5 Score=36.47 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|||.|+|++|..+++.+-..|..+++.+|.+.
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 357899999999999999999999999999998654
No 306
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=77.21 E-value=4.3 Score=41.14 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|+|+|+-|+.|+..+...|. +|++++..+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 45789999999999999999999998 888888654
No 307
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=77.06 E-value=8.1 Score=27.35 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=19.2
Q ss_pred EEEEEEeCCCCC----CCCCCCEEeecCc
Q 026414 72 AGIVESVGEGVT----EVQPGDHVIPCYQ 96 (239)
Q Consensus 72 vG~Vv~vG~~v~----~~~~Gd~V~~~~~ 96 (239)
.|+|+++|++.. .+++||+|+...+
T Consensus 37 ~G~VvavG~g~~~~~~~Vk~GD~Vl~~~y 65 (91)
T PRK14533 37 KAEVVAVGKLDDEEDFDIKVGDKVIFSKY 65 (91)
T ss_pred eEEEEEECCCCccccccccCCCEEEEccC
Confidence 599999997542 3899999985433
No 308
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=76.99 E-value=6.5 Score=29.77 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=27.3
Q ss_pred hhhhcCCCCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEc
Q 026414 186 VWNTAKVEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGID 226 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~---g~~g~~ai~~~~~~G~~~vv~~~ 226 (239)
+....+.++||.++++.. .+.-+.+++.||.+|+ +||++.
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~-~vIalT 137 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGM-KVIALT 137 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT--EEEEEE
T ss_pred HHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence 334556899999999832 5666889999999999 887764
No 309
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=76.95 E-value=6.2 Score=33.22 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~ 225 (239)
-.|.+++|.|.|.+|..+++++...|+ +++++
T Consensus 30 l~g~~v~IqGfG~VG~~~a~~l~~~Ga-~vv~v 61 (244)
T PF00208_consen 30 LEGKRVAIQGFGNVGSHAARFLAELGA-KVVAV 61 (244)
T ss_dssp STTCEEEEEESSHHHHHHHHHHHHTTE-EEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEE
Confidence 468999999999999999999999998 77766
No 310
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.94 E-value=12 Score=32.32 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 192 VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 192 ~~~g~~vlI~G~g~-~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
.-.|.+++|+|.|. +|...+.++...|+ +|+++.+..+
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~ 194 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQ 194 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCch
Confidence 45789999999976 99999999999999 8888876433
No 311
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=76.59 E-value=5.6 Score=37.87 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
....+|+|+|+|.+|.+.++.++.+|+ ++++++.+++
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~-~Vi~ld~~~~ 56 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGI-KVKVLDPLED 56 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 456799999999999999999999999 8888887654
No 312
>PLN02477 glutamate dehydrogenase
Probab=76.59 E-value=5.6 Score=36.17 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE-EEcCC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDID 228 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv-~~~~~ 228 (239)
-.|.+|+|.|-|.+|..+++++...|+ +|+ +.|++
T Consensus 204 l~g~~VaIqGfGnVG~~~A~~L~e~Ga-kVVaVsD~~ 239 (410)
T PLN02477 204 IAGQTFVIQGFGNVGSWAAQLIHEKGG-KIVAVSDIT 239 (410)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEECCC
Confidence 368899999999999999999999999 777 55554
No 313
>PRK04457 spermidine synthase; Provisional
Probab=76.46 E-value=8.1 Score=32.80 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhcC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY 239 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~~ 239 (239)
.+..+||++|.|. |..+..+++.....++++++.+++-.+.++++|
T Consensus 65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f 110 (262)
T PRK04457 65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF 110 (262)
T ss_pred CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHc
Confidence 3457899998864 666777777765448999999999888887653
No 314
>PRK09414 glutamate dehydrogenase; Provisional
Probab=76.30 E-value=7.9 Score=35.62 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~ 225 (239)
-.|.+|+|.|-|.+|..+++++...|+ +|+++
T Consensus 230 l~g~rVaIqGfGnVG~~~A~~L~~~Ga-kVVav 261 (445)
T PRK09414 230 FEGKRVVVSGSGNVAIYAIEKAQQLGA-KVVTC 261 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence 478999999999999999999999999 77777
No 315
>PRK06153 hypothetical protein; Provisional
Probab=76.05 E-value=4.4 Score=36.53 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|.|.|++|..++..+-.+|..+++.+|...
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 568999999999999999999999998999998653
No 316
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=76.05 E-value=6.8 Score=27.89 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=19.2
Q ss_pred EEEEEEeCCCCC---------CCCCCCEEeecC
Q 026414 72 AGIVESVGEGVT---------EVQPGDHVIPCY 95 (239)
Q Consensus 72 vG~Vv~vG~~v~---------~~~~Gd~V~~~~ 95 (239)
.|+|+++|++.. .+++||+|+...
T Consensus 37 ~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~ 69 (95)
T PRK00364 37 EGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGK 69 (95)
T ss_pred eEEEEEECCCeECCCCCEeecccCCCCEEEEcC
Confidence 699999999642 399999998543
No 317
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=75.63 E-value=5.9 Score=38.86 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.+.+|+|+|+|+.|+.|+..+...|. +|++++..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 57799999999999999999999998 88888864
No 318
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=75.22 E-value=4.6 Score=37.13 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=29.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
-.|+|+|+|+.|.+++..+...|. +|+++++...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGI-ETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence 468899999999999988888999 8999987653
No 319
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=75.15 E-value=7 Score=33.33 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|||.|.|++|.-+++.+-..|..++..+|...
T Consensus 25 ~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~ 60 (287)
T PTZ00245 25 MHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL 60 (287)
T ss_pred hhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCc
Confidence 457899999999999999999999998999998665
No 320
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=75.11 E-value=5.9 Score=34.79 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~ 228 (239)
.|.++.|+|.|.+|...++.++ .+|+ +|++.++.
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~ 178 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARR 178 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCC
Confidence 6789999999999999999998 8999 88888765
No 321
>PLN02256 arogenate dehydrogenase
Probab=75.09 E-value=9.8 Score=33.10 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=34.9
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
+++..+-..+.+|.|+|.|.+|...+..++..|. .|+++++++.
T Consensus 27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~ 70 (304)
T PLN02256 27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY 70 (304)
T ss_pred HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH
Confidence 4455555566789999999999998888888887 8888888764
No 322
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=74.72 E-value=6.6 Score=36.22 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=30.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+.+|+|+|||..|++|++-+...|+..+.++..++
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d 55 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASD 55 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecc
Confidence 34556899999999999999888888887777776543
No 323
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=74.70 E-value=7.2 Score=31.42 Aligned_cols=46 Identities=22% Similarity=0.146 Sum_probs=32.1
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
......++.+||-+|+|. |..+..+++ .|. +|+++|.+++-++.++
T Consensus 24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~-~g~-~V~gvD~S~~~i~~a~ 69 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGN-GRNSLYLAA-NGF-DVTAWDKNPMSIANLE 69 (197)
T ss_pred HhcccCCCCcEEEECCCC-CHHHHHHHH-CCC-EEEEEeCCHHHHHHHH
Confidence 344455678898887744 555566665 477 9999999987666554
No 324
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=74.61 E-value=4.8 Score=37.53 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=28.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.--|+|+|+|..|++|+..|...|+ +|++++...
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~ 94 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMP 94 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCC
Confidence 3458888999999999888888999 888887654
No 325
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=74.58 E-value=8.8 Score=31.50 Aligned_cols=50 Identities=28% Similarity=0.474 Sum_probs=33.2
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREF 236 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~ 236 (239)
++....+++|++||-+|+|. |..++-+++..|. ..|+.++..++-.+.++
T Consensus 64 ~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~ 114 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERAR 114 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHH
Confidence 55667799999999997742 5566666666663 26889998887666554
No 326
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=74.26 E-value=6.9 Score=35.54 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 191 ~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
.-..-++|||.|+ |.+|+..++.++..|+ .|.+..++..+.+
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf-~vra~VRd~~~a~ 117 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGF-SVRALVRDEQKAE 117 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCC-eeeeeccChhhhh
Confidence 3445688999999 9999999999999998 8888887776543
No 327
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=74.04 E-value=3.9 Score=39.35 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=27.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPK 230 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~ 230 (239)
-.|||.|+|+.|++++..+.. .|. ++.++++.++
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~ 67 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPG 67 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCC
Confidence 468999999999997777766 498 8888987754
No 328
>PRK08605 D-lactate dehydrogenase; Validated
Probab=73.99 E-value=6.6 Score=34.57 Aligned_cols=36 Identities=42% Similarity=0.507 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEcCChh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGIDIDPK 230 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~-~~~G~~~vv~~~~~~~ 230 (239)
.|.+|.|+|.|.+|...++.+ +..|. +|++.+++..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~~~~ 181 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDPFPN 181 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCcc
Confidence 578999999999999888887 67888 8999987654
No 329
>PLN02463 lycopene beta cyclase
Probab=73.96 E-value=5.6 Score=36.61 Aligned_cols=32 Identities=44% Similarity=0.547 Sum_probs=27.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.|+|+|+|+.|++++..+...|. +|.+++.++
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl-~V~liE~~~ 61 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGL-SVCCIDPSP 61 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-eEEEeccCc
Confidence 57888999999998777777898 899998765
No 330
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=73.87 E-value=5.6 Score=31.56 Aligned_cols=38 Identities=26% Similarity=0.255 Sum_probs=26.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~ 231 (239)
-++++|+|+|+|..+.-++..+...| ++|..+.+++.+
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~R~~~~ 202 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVTRSPIW 202 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEESS---
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEecCCCC
Confidence 46799999999998887777777777 499998887654
No 331
>PRK06046 alanine dehydrogenase; Validated
Probab=73.64 E-value=12 Score=32.71 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+...++.|+|+|..|...+..+. ..+++.+.+.++++++.+.+.
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~ 171 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFV 171 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHH
Confidence 44578899999999988777665 567889999999988776654
No 332
>PRK07121 hypothetical protein; Validated
Probab=73.56 E-value=5.7 Score=36.78 Aligned_cols=33 Identities=39% Similarity=0.522 Sum_probs=27.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
--|||+|+|..|+.|+.-|...|+ +|++++...
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~ 53 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAAAGA-RVLVLERAA 53 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 358888999999998888888898 888887654
No 333
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=73.44 E-value=9.1 Score=31.80 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
++.+|||+|+|.++.-=+..+...|+ +|+++...
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 56799999999999888888888998 77777654
No 334
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.26 E-value=7.5 Score=38.04 Aligned_cols=39 Identities=33% Similarity=0.427 Sum_probs=34.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
.+|.|+|+|.+|...++.+-..|+ .|+..+.+++.++.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~ 352 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLG 352 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence 478999999999998888888899 999999999887654
No 335
>PLN02852 ferredoxin-NADP+ reductase
Probab=73.20 E-value=7.3 Score=36.33 Aligned_cols=36 Identities=33% Similarity=0.331 Sum_probs=30.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHH--cCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKA--AGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~--~G~~~vv~~~~~~ 229 (239)
..+.+|+|+|+|+-|+.++..+.. .|+ +|.++++.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP 61 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC
Confidence 345789999999999999988865 688 899988765
No 336
>PTZ00188 adrenodoxin reductase; Provisional
Probab=73.08 E-value=8.5 Score=35.93 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCHHHHHHHH-HHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAE-GAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~-~~~~~G~~~vv~~~~~~ 229 (239)
...+|+|+|+|+.|+.++. +++..|. .|.++++.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 4578999999999999877 6667788 788887765
No 337
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=72.65 E-value=15 Score=30.01 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=36.3
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~ 237 (239)
+....+++++++||-+|+|. |..+..+++..+. .+|+.++.+++-.+.+++
T Consensus 68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~ 119 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKK 119 (212)
T ss_pred HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 44566789999999997743 4445566666552 389999999987776654
No 338
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=72.64 E-value=6.3 Score=32.75 Aligned_cols=32 Identities=34% Similarity=0.363 Sum_probs=23.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
-|+|.|+|+.|+.++..+...|. +|.+++++.
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g~-kV~v~E~~~ 50 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAGL-KVAVIERKL 50 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHTS--EEEEESSS
T ss_pred CEEEECCChhHHHHHHHHHHCCC-eEEEEecCC
Confidence 35667999999998887777798 898888654
No 339
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=72.44 E-value=8.8 Score=36.08 Aligned_cols=34 Identities=41% Similarity=0.597 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.|.++.|+|.|.+|...++.++..|+ +|++.++.
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~ 172 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDPY 172 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCC
Confidence 57899999999999999999999999 99999874
No 340
>PLN02823 spermine synthase
Probab=71.96 E-value=9.5 Score=33.74 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhcC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY 239 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~~ 239 (239)
...+|||+|.|. |..+..+++..+..++++++.+++-.+++++++
T Consensus 103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~ 147 (336)
T PLN02823 103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHL 147 (336)
T ss_pred CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhc
Confidence 346899997753 344556777767779999999999888887653
No 341
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=71.86 E-value=9.9 Score=33.55 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=29.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
-.+.+|.|+|.|.+|.+.++-++..|. .|++..+.
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~ 49 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLRE 49 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECC
Confidence 345789999999999999999999998 77665554
No 342
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=71.17 E-value=7.5 Score=39.59 Aligned_cols=35 Identities=29% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Confidence 36789999999999999999999998 888887653
No 343
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=71.05 E-value=12 Score=26.94 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=28.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCChhhHhhhhh
Q 026414 197 IVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~--G~~~vv~~~~~~~~~~~~~~ 237 (239)
++.|+|.|.+|......++.. +.+.+-++++++++.+.+.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~ 44 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE 44 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH
Confidence 578889999998887666665 45344567777777666543
No 344
>PHA01634 hypothetical protein
Probab=70.87 E-value=11 Score=28.67 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=28.8
Q ss_pred CCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 194 PGSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 194 ~g~~vlI~G~--g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
.+++|+++|+ |..++ -++ ..|++.|+++..+++..+..+
T Consensus 28 k~KtV~dIGA~iGdSai---YF~-l~GAK~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 28 YQRTIQIVGADCGSSAL---YFL-LRGASFVVQYEKEEKLRKKWE 68 (156)
T ss_pred cCCEEEEecCCccchhh---HHh-hcCccEEEEeccCHHHHHHHH
Confidence 5689999887 54444 333 679999999999888777654
No 345
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=70.55 E-value=8.8 Score=33.91 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
..|++|.|+|.|.+|...++=++..| ..+.-..+.+.+.+.+.
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~ 202 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAY 202 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHH
Confidence 46899999999999999999999999 47777777666555543
No 346
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=70.50 E-value=6.9 Score=32.86 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|||.|+|++|..+...+-.+|..++.++|...
T Consensus 29 ~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~ 64 (254)
T COG0476 29 KDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDT 64 (254)
T ss_pred hhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCc
Confidence 347899999999999999999999998988887654
No 347
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=70.49 E-value=6.1 Score=28.01 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEEEEeCCCC---------CCCCCCCEEeecCc
Q 026414 71 AAGIVESVGEGV---------TEVQPGDHVIPCYQ 96 (239)
Q Consensus 71 ~vG~Vv~vG~~v---------~~~~~Gd~V~~~~~ 96 (239)
..|+|+++|++. ..+++||+|+...+
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~ 69 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKY 69 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEECCC
Confidence 369999999973 25999999985543
No 348
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=70.37 E-value=6.9 Score=33.22 Aligned_cols=46 Identities=30% Similarity=0.404 Sum_probs=32.8
Q ss_pred hhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHc----CC------CeEEEEcCC
Q 026414 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA----GA------SRVIGIDID 228 (239)
Q Consensus 183 ~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~----G~------~~vv~~~~~ 228 (239)
++++......-...++++.|+|.-|...+.+.... |. ++++.+|+.
T Consensus 13 l~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 13 LNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp HHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred HHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 34443444445667889999999999988888887 98 789999876
No 349
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=70.31 E-value=12 Score=30.44 Aligned_cols=49 Identities=29% Similarity=0.299 Sum_probs=35.8
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~ 237 (239)
.....+++.+||-+|+|. |..+..+++..+ ..++++++.+++.++.+++
T Consensus 45 ~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 94 (239)
T PRK00216 45 KWLGVRPGDKVLDLACGT-GDLAIALAKAVGKTGEVVGLDFSEGMLAVGRE 94 (239)
T ss_pred HHhCCCCCCeEEEeCCCC-CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Confidence 334456778999898866 667777777765 2399999999887766654
No 350
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=70.22 E-value=10 Score=32.62 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHc----CC------CeEEEEcCC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAA----GA------SRVIGIDID 228 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~----G~------~~vv~~~~~ 228 (239)
-...++++.|+|.-|...+.++... |+ ++++.+|+.
T Consensus 23 l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 23 LSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred hhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 3457888889999998887777765 87 689998876
No 351
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=70.20 E-value=10 Score=32.22 Aligned_cols=44 Identities=25% Similarity=0.180 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~ 238 (239)
..++||++|+|. |..+..+++.....++++++.+++-.+.++++
T Consensus 72 ~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~ 115 (270)
T TIGR00417 72 NPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKF 115 (270)
T ss_pred CCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHH
Confidence 345999998755 33445556655566899999998877776653
No 352
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=70.18 E-value=9.7 Score=37.25 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=33.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
.+|.|+|+|.+|...++.+-..|+ .|+..+.+++.++.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~ 352 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLG 352 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence 478999999999988888888899 999999999877654
No 353
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.79 E-value=14 Score=34.01 Aligned_cols=27 Identities=41% Similarity=0.490 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGA 219 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~ 219 (239)
..+.+|+|+|+|.+|+.++.+++..|.
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~ 40 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA 40 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 356799999999999999999999998
No 354
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=69.76 E-value=11 Score=35.42 Aligned_cols=34 Identities=41% Similarity=0.580 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.|.++.|+|.|.+|...++.++.+|+ +|++.++.
T Consensus 137 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~ 170 (525)
T TIGR01327 137 YGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDPY 170 (525)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCC
Confidence 57899999999999999999999999 99999874
No 355
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=69.38 E-value=10 Score=37.27 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=34.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
.+|.|+|+|.+|...++.+...|+ .|+..+.+++.++...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~ 375 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQ 375 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHH
Confidence 478999999999988888878899 9999999998877643
No 356
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=68.74 E-value=18 Score=29.22 Aligned_cols=49 Identities=29% Similarity=0.314 Sum_probs=34.5
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
....+++|+.++=+|+|. |..++++++..-..+|+++++++++.++.++
T Consensus 28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~ 76 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIER 76 (187)
T ss_pred HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHH
Confidence 456788999766667632 3445567755445599999999998887653
No 357
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=68.69 E-value=9.9 Score=34.06 Aligned_cols=37 Identities=30% Similarity=0.548 Sum_probs=30.5
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
+.++++++|+|+|.+|+-++..++..|. +|.++...+
T Consensus 141 ~~~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~ 177 (396)
T PRK09754 141 LQPERSVVIVGAGTIGLELAASATQRRC-KVTVIELAA 177 (396)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4567899999999999998888888998 777776543
No 358
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=68.64 E-value=7.9 Score=32.83 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=30.4
Q ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC----------eEEEEcCC
Q 026414 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS----------RVIGIDID 228 (239)
Q Consensus 190 ~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~----------~vv~~~~~ 228 (239)
...-...++++.|+|.-|...+.++...+.+ +++.+|+.
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK 68 (254)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCC
Confidence 3334567889999999999988888877765 78888865
No 359
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=67.96 E-value=22 Score=28.80 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=34.8
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~ 236 (239)
+.....++++++||=+|+|. |..+..+++..+ ..+|+.++.+++-.+.++
T Consensus 64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~ 114 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAA 114 (205)
T ss_pred HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 34556678999998887743 555556666553 238999999988766654
No 360
>PRK01581 speE spermidine synthase; Validated
Probab=67.76 E-value=16 Score=32.82 Aligned_cols=44 Identities=25% Similarity=0.154 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
...++|||+|+| .|..+..+++..+..+|++++.+++-.+++++
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence 344699999865 45566777776666799999999998888775
No 361
>PLN02985 squalene monooxygenase
Probab=67.71 E-value=9.5 Score=35.73 Aligned_cols=33 Identities=33% Similarity=0.346 Sum_probs=27.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
-.|+|.|+|..|++++..+...|. +|.++++..
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGR-RVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcC
Confidence 468899999999998877777898 899998764
No 362
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=67.54 E-value=18 Score=32.05 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=37.1
Q ss_pred hhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh---hhHhhhh
Q 026414 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP---KKFDREF 236 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~---~~~~~~~ 236 (239)
....++||.++||-.. |..|...+..+...|+ +++++.... +|...++
T Consensus 96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~ 147 (362)
T KOG1252|consen 96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLR 147 (362)
T ss_pred HcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHH
Confidence 4567899999999976 8889988999999999 777776544 4544443
No 363
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=67.41 E-value=3.4 Score=31.14 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=29.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc-CChhhHhhhh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGID-IDPKKFDREF 236 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~-~~~~~~~~~~ 236 (239)
.-+|-|+|+|.+|......++..|. .|..+. ++.+..+.+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~ 51 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAA 51 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCcccccccc
Confidence 3478888999999999999999998 777764 4444555443
No 364
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=67.25 E-value=6.3 Score=33.15 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhcC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY 239 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~~ 239 (239)
+.++|||+|.|. |..+-.+++......+.+++.+++-.+.++++|
T Consensus 76 ~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f 120 (246)
T PF01564_consen 76 NPKRVLIIGGGD-GGTARELLKHPPVESITVVEIDPEVVELARKYF 120 (246)
T ss_dssp ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHT
T ss_pred CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecChHHHHHHHHhc
Confidence 578999997644 444556677666679999999999888887654
No 365
>PLN00016 RNA-binding protein; Provisional
Probab=67.22 E-value=8.1 Score=34.34 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=31.9
Q ss_pred CCCCEEEEE----cC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414 193 EPGSIVAVF----GL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (239)
Q Consensus 193 ~~g~~vlI~----G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~ 231 (239)
....+|||+ |+ |.+|...+..+...|. .|+++++++.+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~ 92 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEP 92 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcc
Confidence 344689999 98 9999999999989998 88888887653
No 366
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=66.96 E-value=14 Score=29.33 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=29.2
Q ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 189 ~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
...+++|++||.+|+|.-+.......+..+..++++++.++.
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 345689999999988766654444444434347999998874
No 367
>PRK12831 putative oxidoreductase; Provisional
Probab=66.94 E-value=12 Score=34.58 Aligned_cols=36 Identities=33% Similarity=0.336 Sum_probs=30.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
...+++|+|+|+|.+|.-++..+..+|+ .|.++.+.
T Consensus 278 ~~~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~ 313 (464)
T PRK12831 278 IKVGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRR 313 (464)
T ss_pred ccCCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeec
Confidence 4578999999999999999999999998 57777653
No 368
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=66.86 E-value=12 Score=34.34 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=30.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
...|++|+|+|+|.+|+-++..+..+|. +|.++.+.
T Consensus 269 ~~~gk~VvVIGgG~~a~d~A~~l~~~G~-~Vtlv~~~ 304 (449)
T TIGR01316 269 VYAGKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRR 304 (449)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeec
Confidence 3468899999999999999999999998 57777654
No 369
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.66 E-value=29 Score=29.98 Aligned_cols=54 Identities=20% Similarity=0.139 Sum_probs=38.3
Q ss_pred hcccccchhhhhhhhhcCC-CCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 174 LLGCGVPTGLGAVWNTAKV-EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 174 ~l~~~~~ta~~~~~~~~~~-~~g~~vlI~G~g-~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.++|+...... +++..++ -.|.+|+|+|.| .+|.-.+.++...|+ .|++..+..
T Consensus 136 ~~PcTp~avi~-lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~t 191 (285)
T PRK14191 136 FVPATPMGVMR-LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHILT 191 (285)
T ss_pred CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCCc
Confidence 34554444443 4455554 379999999985 999999999999998 777765544
No 370
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=66.54 E-value=14 Score=31.23 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=34.4
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhhc
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~~ 238 (239)
+....+++||++||=.|.| .|.+...++++.| -.+|+-++.++++.+.|++.
T Consensus 32 I~~~l~i~pG~~VlEaGtG-SG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n 84 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTG-SGSLTHALARAVGPTGHVYTYEFREDRAEKARKN 84 (247)
T ss_dssp HHHHTT--TT-EEEEE--T-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEecCC-cHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHH
Confidence 5677899999999876542 2444556666655 34899999999999888753
No 371
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=66.05 E-value=33 Score=26.26 Aligned_cols=42 Identities=29% Similarity=0.274 Sum_probs=32.9
Q ss_pred hhhcC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 187 WNTAK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 187 ~~~~~-~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
++..+ --.|.+++|+|- ..+|.-.+.++...|+ .|+.+.+..
T Consensus 19 l~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~~~t 62 (140)
T cd05212 19 LNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWKT 62 (140)
T ss_pred HHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeCCCC
Confidence 34444 347899999988 8889999999999998 888887543
No 372
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=65.58 E-value=13 Score=33.56 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=24.8
Q ss_pred CCCCEEEEEcC-CHHHHH--HHHHHHHcCCCeEEEEcC
Q 026414 193 EPGSIVAVFGL-GTVGLA--VAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 193 ~~g~~vlI~G~-g~~g~~--ai~~~~~~G~~~vv~~~~ 227 (239)
..++++||+|+ +.+|++ .++.+ ..|+ .++++..
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~ 74 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFF 74 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEec
Confidence 44578899988 899998 45555 7898 7777763
No 373
>PTZ00367 squalene epoxidase; Provisional
Probab=65.00 E-value=11 Score=35.86 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=28.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
-.|+|.|+|..|++++..+...|. +|.+++++.
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCC-EEEEEcccc
Confidence 368888999999998888888898 999999865
No 374
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=64.97 E-value=22 Score=30.03 Aligned_cols=50 Identities=24% Similarity=0.222 Sum_probs=36.5
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+.....++++.+||=+|+|. |..+..+++..++ ++++++.+++-.+.+++
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~ 93 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKL 93 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHH
Confidence 44666788999998887753 4345566666677 99999999877666654
No 375
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=64.33 E-value=13 Score=33.24 Aligned_cols=39 Identities=31% Similarity=0.315 Sum_probs=27.6
Q ss_pred cCCCCCCEEEEEcCCHHHHHHH-HHHHHcCCCeEEEEcCC
Q 026414 190 AKVEPGSIVAVFGLGTVGLAVA-EGAKAAGASRVIGIDID 228 (239)
Q Consensus 190 ~~~~~g~~vlI~G~g~~g~~ai-~~~~~~G~~~vv~~~~~ 228 (239)
...+....|+|+|+|.+|++++ ++++..|..+|+++++.
T Consensus 25 ~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 25 PEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred CCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 3344556788889999998866 45554585478888865
No 376
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=64.22 E-value=11 Score=31.61 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=25.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.-|+|.|+|+.|+.|+..+-..|+ +|.++.++
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ 62 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERK 62 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCc-eEEEEEee
Confidence 345666999999999998888899 88877654
No 377
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=64.17 E-value=11 Score=35.24 Aligned_cols=31 Identities=32% Similarity=0.177 Sum_probs=26.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~ 226 (239)
.-.|+|+|+|+.|+.++..+...|. ++++++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~-~v~li~ 241 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGI-RTGIVA 241 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEe
Confidence 3478899999999999999999998 666654
No 378
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=63.95 E-value=8.5 Score=30.37 Aligned_cols=45 Identities=29% Similarity=0.322 Sum_probs=27.6
Q ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 190 ~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
....++.+||=+|+| .|+..+.+++..+..+|+++|.++ -++.++
T Consensus 41 ~~~~~~~~VLELGaG-~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~ 85 (173)
T PF10294_consen 41 PELFRGKRVLELGAG-TGLPGIAAAKLFGAARVVLTDYNE-VLELLR 85 (173)
T ss_dssp GGGTTTSEEEETT-T-TSHHHHHHHHT-T-SEEEEEE-S--HHHHHH
T ss_pred hhhcCCceEEEECCc-cchhHHHHHhccCCceEEEeccch-hhHHHH
Confidence 345678888888886 455555666555666999999887 555443
No 379
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=63.80 E-value=31 Score=27.23 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=32.9
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
....+.++++||=+|+|. |..++.+++.....++++++.+++.++.+++
T Consensus 25 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 73 (187)
T PRK08287 25 SKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKE 73 (187)
T ss_pred HhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 445667888888777643 4445555555432389999999987777653
No 380
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=63.43 E-value=12 Score=34.30 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=23.9
Q ss_pred EEEEEcCCHHHHHHH-HHHHHc-CCCeEEEEcCCh
Q 026414 197 IVAVFGLGTVGLAVA-EGAKAA-GASRVIGIDIDP 229 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai-~~~~~~-G~~~vv~~~~~~ 229 (239)
.|+|+|+|.+|++++ .+++.. |. +|++++...
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~~ 59 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEADL 59 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCCc
Confidence 478889999999877 555543 77 888888653
No 381
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=63.34 E-value=17 Score=35.52 Aligned_cols=39 Identities=28% Similarity=0.387 Sum_probs=32.1
Q ss_pred CEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHhhh
Q 026414 196 SIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~~~~~~~~ 235 (239)
.+|.|+|+|.+|...++++- ..|+ .|+..+.+++.++.+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~ 344 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNA 344 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHH
Confidence 47899999999988777665 5898 999999998776554
No 382
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=63.33 E-value=27 Score=28.35 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=34.9
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~ 237 (239)
+.....++++++||=+|+|. |..++.+++..+. ..|+.++.+++-.+.+++
T Consensus 69 ~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~ 120 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAER 120 (215)
T ss_pred HHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 44556788999999987643 3444556665442 269999999887776653
No 383
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=63.16 E-value=23 Score=28.42 Aligned_cols=45 Identities=24% Similarity=0.066 Sum_probs=28.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
++++.+||-+|+|. |..++.+++.....+|+++|.+++..+.+++
T Consensus 43 l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~ 87 (187)
T PRK00107 43 LPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLRE 87 (187)
T ss_pred cCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH
Confidence 44588888887632 2333344444333399999999987776653
No 384
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=63.02 E-value=14 Score=34.08 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
.--++++|+|+|.+|+=.+++...+|. +|+++.+.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~-~VTiie~~~~ 207 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGS-KVTVVERGDR 207 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Confidence 334889999999999999999999998 8888877763
No 385
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=62.39 E-value=17 Score=31.98 Aligned_cols=34 Identities=29% Similarity=0.251 Sum_probs=27.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
+++++|+|+|.+|+-++..+...|.++|+++.+.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 7899999999999988888778898557777643
No 386
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=62.38 E-value=23 Score=29.17 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=30.6
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
...++.+||+.|.|. |.-++.+| ..|+ .|+++|.++.-++.+
T Consensus 34 ~~~~~~rvL~~gCG~-G~da~~LA-~~G~-~V~avD~s~~Ai~~~ 75 (218)
T PRK13255 34 ALPAGSRVLVPLCGK-SLDMLWLA-EQGH-EVLGVELSELAVEQF 75 (218)
T ss_pred CCCCCCeEEEeCCCC-hHhHHHHH-hCCC-eEEEEccCHHHHHHH
Confidence 445678999987642 45555555 4799 999999999876654
No 387
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=62.19 E-value=17 Score=35.53 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=31.9
Q ss_pred CEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHhhh
Q 026414 196 SIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~~~~~~~~ 235 (239)
.+|.|+|+|.+|...++.+. ..|+ .|+..+.+++.++.+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~ 349 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHA 349 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHH
Confidence 57899999999988666655 7898 999999998766654
No 388
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=61.91 E-value=12 Score=36.03 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=27.9
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..|+|+|+|.+|.+++..+...|. +|++++...
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 478899999999998887778898 899998753
No 389
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=61.83 E-value=33 Score=30.08 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=34.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~ 236 (239)
+...++.|+|+|..+.+.+..+.. ...++|.+.+++.++.+...
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~ 170 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFA 170 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHH
Confidence 456889999999999886655543 56789999999999876543
No 390
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=61.71 E-value=13 Score=35.70 Aligned_cols=33 Identities=33% Similarity=0.307 Sum_probs=28.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
-.|+|+|+|.+|..++.-+...|+ +|++++..+
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d 104 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGL-RVGLVERED 104 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccc
Confidence 458888999999998888888899 899998764
No 391
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=61.57 E-value=19 Score=33.02 Aligned_cols=37 Identities=30% Similarity=0.312 Sum_probs=30.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
...+++|+|+|+|.+|.-++..+...|.+.|.++.+.
T Consensus 270 ~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 270 LPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3478999999999999988888888898677777654
No 392
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=61.55 E-value=12 Score=35.84 Aligned_cols=32 Identities=28% Similarity=0.231 Sum_probs=25.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
-|||+|+|.-|++|+.-|...|+ +|++++...
T Consensus 31 DVlVIG~G~AGl~AAi~Aa~~G~-~V~lveK~~ 62 (617)
T PTZ00139 31 DAVVVGAGGAGLRAALGLVELGY-KTACISKLF 62 (617)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-cEEEEeccC
Confidence 48888999999987777777898 777776543
No 393
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=60.94 E-value=17 Score=33.32 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|+|+|+|++|.-++.-+...|...++++|...
T Consensus 19 ~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 19 ESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCc
Confidence 457899999999999999999999999999998664
No 394
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=60.91 E-value=22 Score=29.10 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~ 235 (239)
..++.+||+.|.|. |.-++-+| ..|. .|+++|.++.-++.+
T Consensus 32 ~~~~~rvLd~GCG~-G~da~~LA-~~G~-~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 32 LPAGARVFVPLCGK-SLDLAWLA-EQGH-RVLGVELSEIAVEQF 72 (213)
T ss_pred CCCCCeEEEeCCCc-hhHHHHHH-hCCC-eEEEEeCCHHHHHHH
Confidence 35778999997743 55566666 4798 999999999877764
No 395
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=60.84 E-value=16 Score=32.08 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=30.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
-..++|.|+|.+|+.+...++..|. +|++++..+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~-~v~l~e~~~~ 170 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK-KVTLIEAADR 170 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEcccc
Confidence 5788888999999999999999998 7777776654
No 396
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=60.75 E-value=22 Score=31.11 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=35.4
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 192 ~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
...++.|+|+|. +++|...+.-+...|+ .|++..-.++..+.++
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf-~V~Agcl~~~gae~L~ 70 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKGF-RVFAGCLTEEGAESLR 70 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcCC-EEEEEeecCchHHHHh
Confidence 345677999999 9999999999999999 8888877776655543
No 397
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.67 E-value=36 Score=29.67 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=39.3
Q ss_pred hcccccchhhhhhhhhcCC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 174 LLGCGVPTGLGAVWNTAKV-EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 174 ~l~~~~~ta~~~~~~~~~~-~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
.++|+...... ++...++ -.|.+|.|+|. +.+|.-.+.++...|+ .|++..+...
T Consensus 138 ~~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~ 194 (301)
T PRK14194 138 LTPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST 194 (301)
T ss_pred CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC
Confidence 34554443343 4444443 47999999999 5999999999999999 8888865443
No 398
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=60.59 E-value=13 Score=35.78 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=24.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
-|||+|+|.-|++|+.-|...|+ +|+++..
T Consensus 37 DVlVVG~G~AGl~AAi~Aae~G~-~VilieK 66 (640)
T PRK07573 37 DVIVVGTGLAGASAAATLGELGY-NVKVFCY 66 (640)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-cEEEEec
Confidence 48888999999988888888898 7777753
No 399
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=60.59 E-value=15 Score=34.20 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
+.-.+.+||+|+|..|+.|+.-+-.+|+ +++.+..++.
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKeps 158 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPS 158 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCCc
Confidence 3457899999999999998888889999 9999987763
No 400
>PRK11823 DNA repair protein RadA; Provisional
Probab=60.57 E-value=43 Score=30.84 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=17.1
Q ss_pred CCCCCccccCCCCCCCCCcCC
Q 026414 98 ECRECKFCKSGKTNLCGKVRG 118 (239)
Q Consensus 98 ~~~~c~~c~~~~~~~c~~~~~ 118 (239)
-|..|.+-...|...|+.+..
T Consensus 9 ~C~~Cg~~~~~~~g~Cp~C~~ 29 (446)
T PRK11823 9 VCQECGAESPKWLGRCPECGA 29 (446)
T ss_pred ECCcCCCCCcccCeeCcCCCC
Confidence 388899999999999997653
No 401
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=60.52 E-value=28 Score=30.21 Aligned_cols=43 Identities=12% Similarity=0.025 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~ 235 (239)
+...++.|+|+|..+.+.++.+.. ...++|.+.+++.++.+..
T Consensus 115 ~da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f 158 (301)
T PRK06407 115 KNVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAF 158 (301)
T ss_pred cCCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHH
Confidence 466888999999999887766664 5788999999999886654
No 402
>PRK14851 hypothetical protein; Provisional
Probab=59.83 E-value=17 Score=35.34 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+.+|+|.|.|++|..++..+-..|..+++.+|.+.
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 468999999999999999999999998999988554
No 403
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=59.40 E-value=17 Score=35.67 Aligned_cols=37 Identities=35% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
...|++|+|+|+|.+|.-++..++.+|+++|+++.+.
T Consensus 567 ~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 567 IKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3568999999999999999999999998657777654
No 404
>PLN03075 nicotianamine synthase; Provisional
Probab=59.18 E-value=31 Score=29.94 Aligned_cols=45 Identities=27% Similarity=0.181 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhhc
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFWS 238 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~~ 238 (239)
+.++|+=+|.|+.++.++.+++.+. -.+++.+|.+++..+.+++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~ 168 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRL 168 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 7789999999999998888887654 23799999999988887653
No 405
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=59.14 E-value=24 Score=25.20 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=17.9
Q ss_pred EEEEEEeCCCCC---------CCCCCCEEeecC
Q 026414 72 AGIVESVGEGVT---------EVQPGDHVIPCY 95 (239)
Q Consensus 72 vG~Vv~vG~~v~---------~~~~Gd~V~~~~ 95 (239)
-|+|+++|++-. .+++||+|+..-
T Consensus 37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~k 69 (96)
T COG0234 37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLFGK 69 (96)
T ss_pred ceEEEEEccceecCCCCEeccccccCCEEEECc
Confidence 389999997422 389999998543
No 406
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=59.12 E-value=14 Score=35.55 Aligned_cols=31 Identities=29% Similarity=0.272 Sum_probs=25.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
-|||+|+|.-|+.|+.-|...|+ +|++++..
T Consensus 52 DVlVIG~G~AGl~AAl~Aae~G~-~VilveK~ 82 (635)
T PLN00128 52 DAVVVGAGGAGLRAAIGLSEHGF-NTACITKL 82 (635)
T ss_pred CEEEECccHHHHHHHHHHHhcCC-cEEEEEcC
Confidence 48888999999987777777898 77777654
No 407
>PRK07402 precorrin-6B methylase; Provisional
Probab=59.02 E-value=35 Score=27.22 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=32.0
Q ss_pred hhhcCCCCCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 187 WNTAKVEPGSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 187 ~~~~~~~~g~~vlI~G~--g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.....++++++||=.|+ |.++. .+++......|++++.+++..+.+++
T Consensus 33 ~~~l~~~~~~~VLDiG~G~G~~~~---~la~~~~~~~V~~vD~s~~~~~~a~~ 82 (196)
T PRK07402 33 ISQLRLEPDSVLWDIGAGTGTIPV---EAGLLCPKGRVIAIERDEEVVNLIRR 82 (196)
T ss_pred HHhcCCCCCCEEEEeCCCCCHHHH---HHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 44556778888877765 55444 44444332399999999988777654
No 408
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=58.91 E-value=22 Score=31.05 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+..+++.|+|+|..+...+..+.. ...++|.+.++++++.+.+.+
T Consensus 126 ~~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~ 171 (313)
T PF02423_consen 126 PDARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAA 171 (313)
T ss_dssp TT--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHH
T ss_pred CCCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHH
Confidence 455788999999999987777664 679999999999988766543
No 409
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.72 E-value=44 Score=29.04 Aligned_cols=55 Identities=22% Similarity=0.132 Sum_probs=38.7
Q ss_pred hcccccchhhhhhhhhcCC-CCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEc-CChh
Q 026414 174 LLGCGVPTGLGAVWNTAKV-EPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGID-IDPK 230 (239)
Q Consensus 174 ~l~~~~~ta~~~~~~~~~~-~~g~~vlI~G-~g~~g~~ai~~~~~~G~~~vv~~~-~~~~ 230 (239)
.++|+..+.+. ++...++ -.|.+|+|+| .+.+|.-.+..+...|+ .|++.. ++.+
T Consensus 137 ~~PcTp~ai~~-ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~~ 194 (296)
T PRK14188 137 LVPCTPLGCMM-LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTRD 194 (296)
T ss_pred CcCCCHHHHHH-HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCCC
Confidence 34554444343 3344443 5799999999 59999999999999998 888884 4443
No 410
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=58.47 E-value=21 Score=34.50 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
....+++|+|+|+|.+|.-++..+...|.++|.++.+.
T Consensus 319 ~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 319 ALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 35679999999999999998888888998667777644
No 411
>PRK13748 putative mercuric reductase; Provisional
Probab=58.42 E-value=17 Score=34.22 Aligned_cols=31 Identities=42% Similarity=0.425 Sum_probs=27.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.|+|+|+|+-|+.++..+...|. +|.++++.
T Consensus 100 DvvVIG~GpaG~~aA~~~~~~G~-~v~lie~~ 130 (561)
T PRK13748 100 HVAVIGSGGAAMAAALKAVEQGA-RVTLIERG 130 (561)
T ss_pred CEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 47888999999999999999998 89999865
No 412
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=58.09 E-value=34 Score=26.84 Aligned_cols=44 Identities=25% Similarity=0.129 Sum_probs=30.7
Q ss_pred hhhhcC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 186 VWNTAK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 186 ~~~~~~-~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
+++..+ --.|++++|.|- ..+|.-...++...|+ .|....+..+
T Consensus 26 lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a-tVt~~h~~T~ 71 (160)
T PF02882_consen 26 LLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGA-TVTICHSKTK 71 (160)
T ss_dssp HHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT--EEEEE-TTSS
T ss_pred HHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCC-eEEeccCCCC
Confidence 334444 458899999988 6799999999999999 8888766543
No 413
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=57.72 E-value=17 Score=36.04 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=28.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..+|+|+|+|..|+.++..+...|. +|+++..++
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 271 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGF-KVVVLEGRA 271 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeccc
Confidence 4679999999999999999999998 788877653
No 414
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=57.55 E-value=23 Score=32.17 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=29.7
Q ss_pred CCCCEEEEEcC-----------------CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGL-----------------GTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~-----------------g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
-.|.++||+|+ |.+|.+.++.+...|+ .|+.++++.
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga-~V~~v~~~~ 238 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA-DVTLVSGPV 238 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC-EEEEeCCCc
Confidence 36889999954 6799999999999999 888887653
No 415
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=57.52 E-value=32 Score=28.62 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=34.9
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+......+++++||=+|+| .|..+..+++.....+++++|.+++.++.+++
T Consensus 23 ll~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~ 73 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCG-PGNSTELLVERWPAARITGIDSSPAMLAEARS 73 (258)
T ss_pred HHhhCCCcCCCEEEEEccc-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 3345566788898888763 23445566666543499999999987776654
No 416
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=57.34 E-value=15 Score=37.26 Aligned_cols=33 Identities=52% Similarity=0.622 Sum_probs=28.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..|+|+|+|+-|+.|+..+...|. +|++++..+
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~-~V~liD~~~ 196 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGA-RVILVDEQP 196 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 468999999999999999999998 888887653
No 417
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=57.30 E-value=15 Score=37.83 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
+-|.+|.|+|+|+.|++|+..+..+|. .|++..+++
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh-~v~vyer~d 1818 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGH-TVTVYERSD 1818 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCc-EEEEEEecC
Confidence 458999999999999999999999998 999988776
No 418
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=57.23 E-value=23 Score=32.19 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+++|+|+|+|.+|.-++..++..|. +|.++.+.+
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 190 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGS-KVTVLDAAS 190 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 35789999999999998888888998 788777654
No 419
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=57.22 E-value=27 Score=30.58 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=35.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+-.+.+|.|+|=|+-|++.++-+|..|.+.+|.........+.|+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~ 59 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAK 59 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHH
Confidence 456789999999999999999999999976666665555455554
No 420
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=57.12 E-value=52 Score=28.23 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=33.4
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC--hhhHhhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDREF 236 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~--~~~~~~~~ 236 (239)
....+.++++|+...+|..|.+.+.+++.+|.+-++++... +.|.++++
T Consensus 52 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~ 102 (290)
T TIGR01138 52 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMR 102 (290)
T ss_pred HcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH
Confidence 34445677776665669999999999999999555555443 24555443
No 421
>PLN02529 lysine-specific histone demethylase 1
Probab=57.07 E-value=20 Score=35.29 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
....|+|+|+|..|+.++..+...|. +|++++.++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~-~v~v~E~~~ 193 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGF-KVVVLEGRN 193 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCC-cEEEEecCc
Confidence 34678888999999999999999999 788887654
No 422
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=57.00 E-value=30 Score=23.67 Aligned_cols=37 Identities=35% Similarity=0.418 Sum_probs=19.8
Q ss_pred cCCCCCCEEEEEcC-CHHHHHHHHH-HHHcCCCeEEEEcC
Q 026414 190 AKVEPGSIVAVFGL-GTVGLAVAEG-AKAAGASRVIGIDI 227 (239)
Q Consensus 190 ~~~~~g~~vlI~G~-g~~g~~ai~~-~~~~G~~~vv~~~~ 227 (239)
..+.-.++|||+|+ ++.|+++-.. +-..|+ ..+.+.-
T Consensus 34 ~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA-~TiGV~f 72 (78)
T PF12242_consen 34 GKINGPKKVLVIGASTGYGLASRIAAAFGAGA-DTIGVSF 72 (78)
T ss_dssp ---TS-SEEEEES-SSHHHHHHHHHHHHCC---EEEEEE-
T ss_pred CCCCCCceEEEEecCCcccHHHHHHHHhcCCC-CEEEEee
Confidence 33433489999988 8999874333 334567 7776653
No 423
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=56.98 E-value=23 Score=30.51 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhcC
Q 026414 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY 239 (239)
Q Consensus 191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~~ 239 (239)
+..+ .+|||+|.|. |-.+-.+++....+++++++.+++-.+++++++
T Consensus 74 h~~p-k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l 120 (282)
T COG0421 74 HPNP-KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYL 120 (282)
T ss_pred CCCC-CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhc
Confidence 3344 5999986533 344557778887889999999999888887653
No 424
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=56.88 E-value=22 Score=31.52 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=30.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+++++|+|+|.+|.-++..+...|. +|+.+.+.+
T Consensus 138 ~~~~~~vvViGgG~~g~e~A~~L~~~g~-~Vtlv~~~~ 174 (377)
T PRK04965 138 LRDAQRVLVVGGGLIGTELAMDLCRAGK-AVTLVDNAA 174 (377)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 3567899999999999988888888897 777777654
No 425
>PLN02676 polyamine oxidase
Probab=56.85 E-value=20 Score=33.29 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=28.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...|+|+|+|..|++++..+...|...|++++..+
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~ 60 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATD 60 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 45688889999999999999999974587777654
No 426
>PLN02602 lactate dehydrogenase
Probab=56.83 E-value=29 Score=30.83 Aligned_cols=38 Identities=29% Similarity=0.564 Sum_probs=31.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFD 233 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~ 233 (239)
.+|.|+|+|.+|...+..+...+. ..++.+|.++++.+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~ 76 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLR 76 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhh
Confidence 689999999999998888887774 57999998887653
No 427
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=56.65 E-value=18 Score=33.36 Aligned_cols=37 Identities=35% Similarity=0.444 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..-+++|.|+|+|+-|+.+...+...|. .|++.++.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~-~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGH-DVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCC-eEEEeCCcC
Confidence 3456999999999999999999999998 888887665
No 428
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=56.58 E-value=42 Score=28.19 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=37.8
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
.....++|++||=+++ +.|..|..+++..|-..|+++|-+++-++.+++
T Consensus 45 ~~~~~~~g~~vLDva~-GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~ 93 (238)
T COG2226 45 SLLGIKPGDKVLDVAC-GTGDMALLLAKSVGTGEVVGLDISESMLEVARE 93 (238)
T ss_pred HhhCCCCCCEEEEecC-CccHHHHHHHHhcCCceEEEEECCHHHHHHHHH
Confidence 4445568999887644 447788888888886699999999988887765
No 429
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=56.38 E-value=45 Score=29.02 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=34.5
Q ss_pred hhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC--ChhhHhhhh
Q 026414 187 WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI--DPKKFDREF 236 (239)
Q Consensus 187 ~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~--~~~~~~~~~ 236 (239)
.....+++|++ +|-+. |..|++.+.+++++|++-++++.. +.+|.++++
T Consensus 54 e~~G~l~pG~t-IVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~ 105 (300)
T COG0031 54 EKRGLLKPGGT-IVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLR 105 (300)
T ss_pred HHcCCCCCCCE-EEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 35666999995 44455 999999999999999955555543 335655554
No 430
>PLN02697 lycopene epsilon cyclase
Probab=56.38 E-value=18 Score=34.07 Aligned_cols=30 Identities=33% Similarity=0.352 Sum_probs=24.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
.|+|+|+|+.|++++..+...|. +|.+++.
T Consensus 110 DVvIVGaGPAGLalA~~Lak~Gl-~V~LIe~ 139 (529)
T PLN02697 110 DLVVIGCGPAGLALAAESAKLGL-NVGLIGP 139 (529)
T ss_pred cEEEECcCHHHHHHHHHHHhCCC-cEEEecC
Confidence 57888999999988777777798 7887765
No 431
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=56.36 E-value=19 Score=33.70 Aligned_cols=33 Identities=30% Similarity=0.175 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~ 226 (239)
++.-.|+|+|+|+-|+.|+..+...|. +|++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~-~v~li~ 242 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL-RTAMVA 242 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEe
Confidence 334578899999999999999999998 666664
No 432
>PRK07846 mycothione reductase; Reviewed
Probab=56.35 E-value=23 Score=32.45 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=29.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.++++|+|+|.+|.-.++.++.+|. +|+.+.+.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~~~ 199 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGV-RVTVVNRSG 199 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 4789999999999999999999998 788877654
No 433
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=56.22 E-value=23 Score=32.65 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~ 226 (239)
..+++|+|+|+|.+|+-++..+...|.++|+...
T Consensus 279 ~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~ 312 (471)
T PRK12810 279 AKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD 312 (471)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence 4688999999999999998888888886777543
No 434
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=56.17 E-value=25 Score=32.57 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
..+++|+|+|+|.+|+-++..+..+|...|.++...
T Consensus 281 ~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~ 316 (485)
T TIGR01317 281 AKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIM 316 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEec
Confidence 468999999999999998777778887678777644
No 435
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=56.05 E-value=31 Score=27.53 Aligned_cols=35 Identities=34% Similarity=0.540 Sum_probs=28.1
Q ss_pred hcCCCCCCEEEEE----cCCHHHHHHHHHHHHcCCCeEEE
Q 026414 189 TAKVEPGSIVAVF----GLGTVGLAVAEGAKAAGASRVIG 224 (239)
Q Consensus 189 ~~~~~~g~~vlI~----G~g~~g~~ai~~~~~~G~~~vv~ 224 (239)
...+++|++|||. ..|....+.+++...+|+ .|+.
T Consensus 110 ~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga-~vvg 148 (179)
T COG0503 110 KDALKPGDRVLIVDDLLATGGTALALIELLEQAGA-EVVG 148 (179)
T ss_pred hhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCC-EEEE
Confidence 3446799999997 449999999999999998 5543
No 436
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=56.01 E-value=30 Score=30.57 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKAAGA 219 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~ 219 (239)
-.|.+|.|+|-|.+|...++.++..|+
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~ 40 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGV 40 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcC
Confidence 467899999999999999999999999
No 437
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=55.90 E-value=38 Score=34.50 Aligned_cols=42 Identities=29% Similarity=0.241 Sum_probs=33.5
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
....+.++++|+|+|+|.+|...+..+...|.+.|.+++..+
T Consensus 310 ~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 310 NRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred HhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 344556889999999999999988888889975677776654
No 438
>PLN02565 cysteine synthase
Probab=55.89 E-value=46 Score=29.15 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=32.5
Q ss_pred hhcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCC--hhhHhhhh
Q 026414 188 NTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDID--PKKFDREF 236 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G-~g~~g~~ai~~~~~~G~~~vv~~~~~--~~~~~~~~ 236 (239)
....+.+|.+.+|.. +|..|.+.+.+++.+|++-++++..+ +.|++.++
T Consensus 59 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~ 110 (322)
T PLN02565 59 EKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILL 110 (322)
T ss_pred HcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHH
Confidence 344457786666664 59999999999999999444444432 24555443
No 439
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=55.87 E-value=22 Score=32.66 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=29.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.++++|+|+|.+|+-++..++..|. +|+.+++.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~-~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGV-EVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEecC
Confidence 4799999999999999999999998 788887654
No 440
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=55.74 E-value=26 Score=32.24 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+++++|+|+|.+|.-.+.++..+|. +|+++...+
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~-~Vtlie~~~ 207 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGA-QVTVVEYLD 207 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCC
Confidence 46899999999999998899899998 777776543
No 441
>PRK14968 putative methyltransferase; Provisional
Probab=55.50 E-value=26 Score=27.29 Aligned_cols=42 Identities=31% Similarity=0.515 Sum_probs=28.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
..+++++|-.|+| .|..+..+++. +. ++++++.+++..+.++
T Consensus 21 ~~~~~~vLd~G~G-~G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~ 62 (188)
T PRK14968 21 DKKGDRVLEVGTG-SGIVAIVAAKN-GK-KVVGVDINPYAVECAK 62 (188)
T ss_pred ccCCCEEEEEccc-cCHHHHHHHhh-cc-eEEEEECCHHHHHHHH
Confidence 3678888888652 23344455554 65 9999999998777664
No 442
>PLN02661 Putative thiazole synthesis
Probab=55.29 E-value=19 Score=32.09 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=26.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~-G~~~vv~~~~~~ 229 (239)
.-.|+|+|+|..|+.++..+... |+ +|++++++.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~-kV~viEk~~ 126 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNV-KVAIIEQSV 126 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCC-eEEEEecCc
Confidence 34678889999999988887654 77 888888654
No 443
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=55.23 E-value=23 Score=36.14 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
...|++|+|+|+|.+|.-++..++.+|++.|.++.+
T Consensus 568 ~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~r 603 (1006)
T PRK12775 568 ISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYR 603 (1006)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEee
Confidence 357899999999999999999999999866665543
No 444
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=54.98 E-value=25 Score=32.46 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
..++++|+|+|.+|.-+++.+..+|. +|+++...+
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G~-~Vtlv~~~~ 207 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLGS-EVDVVEMFD 207 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Confidence 34799999999999999999999998 777776654
No 445
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=54.96 E-value=29 Score=31.91 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=33.9
Q ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 189 ~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
...++++.+||=+|.|. |..++.+++..|+ +++++|.+++-++.++
T Consensus 261 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvDiS~~~l~~A~ 306 (475)
T PLN02336 261 KLDLKPGQKVLDVGCGI-GGGDFYMAENFDV-HVVGIDLSVNMISFAL 306 (475)
T ss_pred hcCCCCCCEEEEEeccC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHH
Confidence 34467788988887744 4455667777787 9999999988777664
No 446
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=54.96 E-value=11 Score=34.86 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=28.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~ 226 (239)
.-.|++|+|+|-|.+|.+.+.-++..|.+.+++..
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr 67 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALR 67 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeEEecc
Confidence 34679999999999999888888889994444443
No 447
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=54.64 E-value=20 Score=33.01 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=28.9
Q ss_pred CCEEEEEcC--CHHHHHHHHHHHHc-CCCeEEEEcCChhhHhh
Q 026414 195 GSIVAVFGL--GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDR 234 (239)
Q Consensus 195 g~~vlI~G~--g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~ 234 (239)
+..|+++|+ |.+...+++.+... +..+|+++..++.....
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence 467888876 89998888887554 46799999998864433
No 448
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=54.42 E-value=25 Score=32.07 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+++++|+|+|.+|.-.+..+...|. +|..+.+.+
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 208 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGV-KVTLINTRD 208 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 35899999999999999999999998 788887665
No 449
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=54.39 E-value=50 Score=29.57 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=33.8
Q ss_pred hhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC--hhhHhhhh
Q 026414 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID--PKKFDREF 236 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~--~~~~~~~~ 236 (239)
....+++|.+.+|..+ |..|.+.+.+++.+|++-++++... .+|.++++
T Consensus 103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr 154 (368)
T PLN02556 103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMR 154 (368)
T ss_pred HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH
Confidence 4455778876677655 9999999999999999555554432 35555443
No 450
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=54.27 E-value=26 Score=31.62 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+++|+|+|+|.+|.-++..++..|. +|..+.+.+
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 170 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERGK-NVTLIHRSE 170 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEECCc
Confidence 45799999999999988888888898 677766544
No 451
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=53.92 E-value=35 Score=28.94 Aligned_cols=51 Identities=25% Similarity=0.221 Sum_probs=40.1
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~ 237 (239)
+....++.+|++|+=.|.| .|.+++.++++.|. .+|+.++..++..+.|.+
T Consensus 86 I~~~~gi~pg~rVlEAGtG-SG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~ 137 (256)
T COG2519 86 IVARLGISPGSRVLEAGTG-SGALTAYLARAVGPEGHVTTYEIREDFAKTARE 137 (256)
T ss_pred HHHHcCCCCCCEEEEcccC-chHHHHHHHHhhCCCceEEEEEecHHHHHHHHH
Confidence 4467789999998876553 36777788887773 699999999998888865
No 452
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=53.90 E-value=27 Score=30.73 Aligned_cols=36 Identities=39% Similarity=0.500 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
+.|||++|+.-.|.-|+-++..++.+|+ .|-++...
T Consensus 89 lePgd~vLv~~~G~wg~ra~D~~~r~ga-~V~~v~~~ 124 (385)
T KOG2862|consen 89 LEPGDNVLVVSTGTWGQRAADCARRYGA-EVDVVEAD 124 (385)
T ss_pred cCCCCeEEEEEechHHHHHHHHHHhhCc-eeeEEecC
Confidence 4599999997779999999999999999 66666443
No 453
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=53.78 E-value=26 Score=27.49 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=25.4
Q ss_pred hhhhcCCCCCCEEEEE-cC---CHHHHHHHHHHHHcCCCeEEE
Q 026414 186 VWNTAKVEPGSIVAVF-GL---GTVGLAVAEGAKAAGASRVIG 224 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~-G~---g~~g~~ai~~~~~~G~~~vv~ 224 (239)
+.......+..+|+|+ |. |+-|+.++..+...|+ .|.+
T Consensus 16 i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~-~V~v 57 (169)
T PF03853_consen 16 IRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGY-NVTV 57 (169)
T ss_dssp HHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTC-EEEE
T ss_pred HHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCC-eEEE
Confidence 4344435677888877 54 6677888888888998 5555
No 454
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=53.51 E-value=17 Score=25.62 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=18.2
Q ss_pred EEEEEEEeCC--------CC-CCCCCCCEEeecCc
Q 026414 71 AAGIVESVGE--------GV-TEVQPGDHVIPCYQ 96 (239)
Q Consensus 71 ~vG~Vv~vG~--------~v-~~~~~Gd~V~~~~~ 96 (239)
..|+|+++|+ .+ ..+++||+|+...+
T Consensus 35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~ 69 (93)
T PF00166_consen 35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKY 69 (93)
T ss_dssp EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETT
T ss_pred ceeEEEEcCCccccCCCcEeeeeeeeccEEecccc
Confidence 4699999999 22 25899999986654
No 455
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=53.21 E-value=36 Score=27.44 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=32.7
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
+....+.+++++||-+|+|. |..+..+++.. . +++.++.+++..+.+++
T Consensus 70 l~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~ 118 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKR 118 (212)
T ss_pred HHHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHH
Confidence 34556788999999997743 33333445443 3 89999999877766643
No 456
>PRK06370 mercuric reductase; Validated
Probab=53.11 E-value=28 Score=31.90 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+++++|+|+|.+|.-++..++..|. +|..+.+.+
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~~ 204 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFGS-EVTVIERGP 204 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 35799999999999999999999998 777777654
No 457
>PLN02503 fatty acyl-CoA reductase 2
Probab=52.83 E-value=27 Score=33.52 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=30.5
Q ss_pred cCCCCCCEEEEEcC-CHHHHHHHHHHHHcC--CCeEEEEcCChh
Q 026414 190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPK 230 (239)
Q Consensus 190 ~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G--~~~vv~~~~~~~ 230 (239)
...-.+.+|||+|+ |.+|...+.-+...+ ..+|++..+.++
T Consensus 114 ~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~ 157 (605)
T PLN02503 114 AEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKD 157 (605)
T ss_pred hhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 33457999999998 999988776655443 458898887654
No 458
>PRK11761 cysM cysteine synthase B; Provisional
Probab=52.80 E-value=68 Score=27.65 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=33.9
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC--hhhHhhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDREF 236 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~--~~~~~~~~ 236 (239)
....+.+|++|+...+|..|++.+..++.+|.+-++++... +.|.++++
T Consensus 56 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~ 106 (296)
T PRK11761 56 KRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMR 106 (296)
T ss_pred HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH
Confidence 34445677887666669999999999999999555555432 35555543
No 459
>PLN02712 arogenate dehydrogenase
Probab=52.79 E-value=35 Score=33.20 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
.+.+|.|+|.|.+|...+..++..|. .|++.+++++
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~~~ 403 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRSDY 403 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECChH
Confidence 45789999999999999898888897 8889988754
No 460
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=52.77 E-value=25 Score=24.68 Aligned_cols=38 Identities=32% Similarity=0.494 Sum_probs=27.7
Q ss_pred CCEEEEEcCCHHHHHH-HHHHHHcCCCeEEEEcCChhhH
Q 026414 195 GSIVAVFGLGTVGLAV-AEGAKAAGASRVIGIDIDPKKF 232 (239)
Q Consensus 195 g~~vlI~G~g~~g~~a-i~~~~~~G~~~vv~~~~~~~~~ 232 (239)
..+++|.|+|.+|.+. -...+..|++.+.+++.++++.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~ 41 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI 41 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc
Confidence 3578888999997654 4455667887788888877654
No 461
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=52.67 E-value=39 Score=28.01 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=31.4
Q ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW 237 (239)
Q Consensus 190 ~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~ 237 (239)
....++++||-+|+|. |..+..+++ .|. .++++|.+++.++.+++
T Consensus 38 l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~ 82 (251)
T PRK10258 38 LPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQ 82 (251)
T ss_pred cCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHh
Confidence 3344678888888754 444444443 576 99999999988777654
No 462
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=52.66 E-value=25 Score=32.23 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=29.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
+++++|+|+|.+|.-.+..+...|. +|+++.+.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~-~Vtli~~~~ 202 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGT-RVTIVNRST 202 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccC
Confidence 5789999999999999999999998 787777654
No 463
>PRK10717 cysteine synthase A; Provisional
Probab=52.65 E-value=60 Score=28.34 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=29.2
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
.....+++++|+...+|..|++.+.+++.+|.+-++++..
T Consensus 57 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~ 96 (330)
T PRK10717 57 KRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPE 96 (330)
T ss_pred HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3444567777766566999999999999999855555443
No 464
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=52.54 E-value=29 Score=31.99 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=28.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
+++|+|+|+|.+|+-+++.++..|. +|+++.+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 216 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGA-EVTILEALP 216 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCC
Confidence 4799999999999999999999998 777777654
No 465
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=52.46 E-value=21 Score=37.07 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=27.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
-|||+|+|.-|++|+.-|...|+ +|++++...
T Consensus 411 DVvVVG~G~AGl~AAi~Aae~Ga-~VivlEK~~ 442 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGA-QVILLEKEA 442 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEccC
Confidence 48888999999998888888998 888887653
No 466
>PLN03013 cysteine synthase
Probab=52.44 E-value=49 Score=30.37 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=33.2
Q ss_pred hhcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcC--ChhhHhhhh
Q 026414 188 NTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDREF 236 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G-~g~~g~~ai~~~~~~G~~~vv~~~~--~~~~~~~~~ 236 (239)
....+++|.+.+|.. +|..|++.+.+++.+|++-++++.. +++|.+.++
T Consensus 167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ir 218 (429)
T PLN03013 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLK 218 (429)
T ss_pred HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH
Confidence 455567886666664 5999999999999999944444443 234555543
No 467
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=52.22 E-value=26 Score=31.43 Aligned_cols=39 Identities=38% Similarity=0.561 Sum_probs=35.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~ 231 (239)
+-+|++++|.|=|-+|...++-++.+|+ +|+++..++-|
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA-~ViVtEvDPI~ 244 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGA-RVIVTEVDPIR 244 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCC-eEEEEecCchH
Confidence 5689999999889999999999999999 89999988754
No 468
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=51.97 E-value=28 Score=31.68 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+++++|+|+|.+|.-.+..++..|. +|..+.+.+
T Consensus 147 ~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~~ 181 (438)
T PRK13512 147 QVDKALVVGAGYISLEVLENLYERGL-HPTLIHRSD 181 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-cEEEEeccc
Confidence 35799999999999998889899998 777777654
No 469
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=51.74 E-value=29 Score=31.81 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=28.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
+++++|+|+|.+|.-++..++..|. +|+++...+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~-~Vtlv~~~~ 205 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGV-DVTIVEFLD 205 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4799999999999999999999998 777776543
No 470
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=51.46 E-value=35 Score=34.96 Aligned_cols=43 Identities=23% Similarity=0.174 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHc-CCC------------eEEEEcCChhhHhhhh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAA-GAS------------RVIGIDIDPKKFDREF 236 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~-G~~------------~vv~~~~~~~~~~~~~ 236 (239)
...+|+|+|+|.+|..++..+... +++ .|++.+.+.++.+.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la 623 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETV 623 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHH
Confidence 356999999999999988888654 332 3777888877766554
No 471
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=51.37 E-value=34 Score=28.06 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=35.3
Q ss_pred hhhhcCCCCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414 186 VWNTAKVEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK 230 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~---g~~g~~ai~~~~~~G~~~vv~~~~~~~ 230 (239)
.+.+.+++++|.++|+.. -++..-++..+|..|+ .||++.+-+.
T Consensus 96 ~l~~~~i~~~DVliviSnSGrNpvpie~A~~~rekGa-~vI~vTSl~y 142 (243)
T COG4821 96 FLHRLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGA-KVIAVTSLDY 142 (243)
T ss_pred HHHHhcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCC-eEEEEehhhh
Confidence 456778999999988833 5788999999999999 8888766543
No 472
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=51.27 E-value=30 Score=31.53 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+++++|+|+|.+|+-.+..+..+|. +|..+.+.+
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 202 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGV-KVTVFERGD 202 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Confidence 45799999999999988888888998 777777654
No 473
>PTZ00058 glutathione reductase; Provisional
Probab=51.24 E-value=30 Score=32.91 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+++|+|+|+|.+|.-.++.+..+|. +|.++.+.+
T Consensus 236 ~pk~VvIIGgG~iGlE~A~~l~~~G~-~Vtli~~~~ 270 (561)
T PTZ00058 236 EAKRIGIAGSGYIAVELINVVNRLGA-ESYIFARGN 270 (561)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-cEEEEEecc
Confidence 37899999999999999999999998 777776654
No 474
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=51.15 E-value=46 Score=27.76 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=35.0
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChhhHhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~~~ 236 (239)
++.....+++++||=+|.|. |..+..+++.. +. +|+++|.+++-++.++
T Consensus 21 ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~ 70 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAAR 70 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHH
Confidence 44556677889998887744 45556666654 55 8999999998777664
No 475
>PRK12862 malic enzyme; Reviewed
Probab=51.12 E-value=27 Score=34.50 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=34.1
Q ss_pred hhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 026414 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID 228 (239)
Q Consensus 183 ~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~--~vv~~~~~ 228 (239)
++++......-..-++++.|+|.-|...+.++...|.+ +++.+|+.
T Consensus 181 ~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 228 (763)
T PRK12862 181 LNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIK 228 (763)
T ss_pred HHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 34343333334567888889999999999999999984 89999843
No 476
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=51.08 E-value=33 Score=25.36 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=26.5
Q ss_pred EEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCCh
Q 026414 197 IVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDP 229 (239)
Q Consensus 197 ~vlI~G~-g~~g~~ai~~~~~-~G~~~vv~~~~~~ 229 (239)
+|+|+|. |.+|...++.+.. .+.+-+-++++.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 5789999 9999999999998 6775566666665
No 477
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=51.07 E-value=51 Score=26.36 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=29.8
Q ss_pred hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~ 236 (239)
+.......++.+||-+|.| .|..+..+++ .|. .|+++|.+++-++.++
T Consensus 22 l~~~~~~~~~~~vLDiGcG-~G~~a~~la~-~g~-~V~~iD~s~~~l~~a~ 69 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCG-QGRNSLYLSL-AGY-DVRAWDHNPASIASVL 69 (195)
T ss_pred HHHHhccCCCCcEEEeCCC-CCHHHHHHHH-CCC-eEEEEECCHHHHHHHH
Confidence 3344444456788888662 2333444444 477 9999999987666554
No 478
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=50.95 E-value=30 Score=31.70 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=28.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
+++++|+|+|.+|.-.+..+..+|. +|+.+.+.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~ 199 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGS-ETHLVIRHE 199 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Confidence 4799999999999999999899998 777776554
No 479
>PRK06199 ornithine cyclodeaminase; Validated
Probab=50.85 E-value=74 Score=28.63 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHH-c-CCCeEEEEcCChhhHhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKA-A-GASRVIGIDIDPKKFDRE 235 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~-~-G~~~vv~~~~~~~~~~~~ 235 (239)
+...++.|+|+|..+...+..+.. . .+++|.+.++++++.+..
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f 197 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSF 197 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHH
Confidence 456788889999999998887776 4 388999999999887654
No 480
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=50.70 E-value=40 Score=27.78 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=28.6
Q ss_pred CCCCEEEEE--cC--CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 193 EPGSIVAVF--GL--GTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 193 ~~g~~vlI~--G~--g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
..+++|+|. |. |..-.+|++.++..+++.+++...-
T Consensus 122 ~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV 161 (220)
T COG1926 122 LKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPV 161 (220)
T ss_pred CCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEccc
Confidence 467888776 64 8888999999999998787776543
No 481
>PLN03000 amine oxidase
Probab=50.52 E-value=27 Score=35.05 Aligned_cols=35 Identities=29% Similarity=0.307 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|+|+|+|..|+.++..++..|. +|++++..+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~-~V~VlE~~~ 217 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGF-KVTVLEGRK 217 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCC-cEEEEEccC
Confidence 34778899999999999999999998 787777654
No 482
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=50.51 E-value=32 Score=31.46 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=28.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.++++|+|+|.+|.-++..++..|. +|+.+.+.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 205 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGA-EVTIVEALP 205 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 4789999999999988888889998 777776654
No 483
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=50.49 E-value=31 Score=31.56 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.++++|+|+|.+|+-++..++.+|. +|+++.+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 199 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS-EVTILQRSD 199 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCC
Confidence 4789999999999999999999998 777777654
No 484
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.28 E-value=64 Score=27.90 Aligned_cols=54 Identities=20% Similarity=0.163 Sum_probs=36.8
Q ss_pred hcccccchhhhhhhhhcCC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 174 LLGCGVPTGLGAVWNTAKV-EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 174 ~l~~~~~ta~~~~~~~~~~-~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.++|+...... +++..++ -.|.+++|+|. ..+|.-.+.++...|+ +|++..+..
T Consensus 137 ~~PcTp~aii~-lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs~t 192 (285)
T PRK14189 137 FRPCTPYGVMK-MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHSKT 192 (285)
T ss_pred CcCCCHHHHHH-HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecCCC
Confidence 34554433333 3344443 47999999998 5559999999999998 777765443
No 485
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=50.22 E-value=33 Score=30.96 Aligned_cols=36 Identities=39% Similarity=0.513 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
+.+||+|||.-.|..|.-..++++..|. .+..++..
T Consensus 77 ~~pgdkVLv~~nG~FG~R~~~ia~~~g~-~v~~~~~~ 112 (383)
T COG0075 77 VEPGDKVLVVVNGKFGERFAEIAERYGA-EVVVLEVE 112 (383)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCC-ceEEEeCC
Confidence 5699999999999999999999999998 77777655
No 486
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=50.07 E-value=35 Score=30.54 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=29.5
Q ss_pred CCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G-~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|.|+| .|.+|...+..++..|. .|++.++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCCc
Confidence 346899998 69999999999999998 888888654
No 487
>PRK14852 hypothetical protein; Provisional
Probab=50.01 E-value=29 Score=35.24 Aligned_cols=36 Identities=31% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
...+|+|.|.|++|..++..+..+|+.++..+|.+.
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 467999999999999999999999998999888654
No 488
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=49.88 E-value=30 Score=35.07 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
.|++|+|+|+|.+|.-++..++..|+ .|+++.+.
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga-~Vtlv~rr 479 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGG-NVTIVYRR 479 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEec
Confidence 68999999999999999999999999 66666544
No 489
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=49.86 E-value=76 Score=27.20 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=31.5
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC--hhhHhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDRE 235 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~--~~~~~~~ 235 (239)
......+|++|+...+|..|.+.+.+++..|++-++++... +.|.+++
T Consensus 50 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~ 99 (298)
T TIGR01139 50 KRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLL 99 (298)
T ss_pred HcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHH
Confidence 34445677776444569999999999999999555555433 3344444
No 490
>PTZ00058 glutathione reductase; Provisional
Probab=49.83 E-value=28 Score=33.10 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=26.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (239)
Q Consensus 197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~ 228 (239)
-|+|+|+|+-|..|+..+...|. +|.++++.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~-~ValIEk~ 80 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKA-KVALVEKD 80 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCC-eEEEEecc
Confidence 47788999999999999999998 89888854
No 491
>PRK06823 ornithine cyclodeaminase; Validated
Probab=49.78 E-value=55 Score=28.60 Aligned_cols=44 Identities=9% Similarity=0.002 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhh
Q 026414 193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREF 236 (239)
Q Consensus 193 ~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~ 236 (239)
+...++.|+|+|..+...++.+.. ...++|.+.+++.++.+...
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~ 170 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYR 170 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHH
Confidence 456788999999999887776664 56889999999999877543
No 492
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=49.75 E-value=32 Score=33.95 Aligned_cols=46 Identities=26% Similarity=0.208 Sum_probs=34.0
Q ss_pred hhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 026414 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID 228 (239)
Q Consensus 183 ~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~--~vv~~~~~ 228 (239)
++++.....--...++++.|+|.-|...+.++...|.+ +++.+|+.
T Consensus 173 ~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 220 (752)
T PRK07232 173 LNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSK 220 (752)
T ss_pred HHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 34343333333567888889999999999999999984 88888854
No 493
>PLN02852 ferredoxin-NADP+ reductase
Probab=49.70 E-value=39 Score=31.54 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=29.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHc--------------------CCCeEEEEcCCh
Q 026414 192 VEPGSIVAVFGLGTVGLAVAEGAKAA--------------------GASRVIGIDIDP 229 (239)
Q Consensus 192 ~~~g~~vlI~G~g~~g~~ai~~~~~~--------------------G~~~vv~~~~~~ 229 (239)
+..+++|+|+|+|.+|+-++..+... |+++|.++-+..
T Consensus 163 ~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg 220 (491)
T PLN02852 163 LKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRG 220 (491)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCC
Confidence 45689999999999998877776554 777777776654
No 494
>PRK12861 malic enzyme; Reviewed
Probab=49.53 E-value=25 Score=34.68 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=33.8
Q ss_pred hhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcC
Q 026414 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDI 227 (239)
Q Consensus 183 ~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~--~vv~~~~ 227 (239)
++++.....--..-++++.|+|.-|...+.++...|++ +++.+|+
T Consensus 177 lnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~ 223 (764)
T PRK12861 177 INGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDI 223 (764)
T ss_pred HHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcC
Confidence 44443333334567888889999999999999999985 7898883
No 495
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=49.46 E-value=1.3e+02 Score=26.34 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=45.9
Q ss_pred ceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhh---cCCCCCCEEEEEcC-CHHHHHHHHHHH-HcCCCeE
Q 026414 148 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT---AKVEPGSIVAVFGL-GTVGLAVAEGAK-AAGASRV 222 (239)
Q Consensus 148 ~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~---~~~~~g~~vlI~G~-g~~g~~ai~~~~-~~G~~~v 222 (239)
.|-+|.++..+.... +.....++..-+ -+.|+|- +.+. .+.-..+.|||.+| +-.++..+..++ ..+..++
T Consensus 90 ~YN~Y~r~~~d~~y~--~~~e~~~~LlrP-Lf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~ 165 (314)
T PF11017_consen 90 IYNQYLRVSADPAYD--PEREDWQMLLRP-LFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV 165 (314)
T ss_pred hhhceeecCCCcccC--cchhHHHHHHHH-HHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence 455666655444331 122223333333 3566664 2111 22334467777777 888888888877 5555599
Q ss_pred EEEcCChhhH
Q 026414 223 IGIDIDPKKF 232 (239)
Q Consensus 223 v~~~~~~~~~ 232 (239)
|.+.+..++.
T Consensus 166 vglTS~~N~~ 175 (314)
T PF11017_consen 166 VGLTSARNVA 175 (314)
T ss_pred EEEecCcchh
Confidence 9998887664
No 496
>PLN02487 zeta-carotene desaturase
Probab=49.44 E-value=33 Score=32.64 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=28.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+|+|+|+|..|+.++..+...|. .|.+++..+
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~-~v~i~E~~~ 108 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRP 108 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-eeEEEecCC
Confidence 389999999999999988888998 888888655
No 497
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=49.33 E-value=82 Score=27.04 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=32.7
Q ss_pred hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC--hhhHhhhh
Q 026414 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDREF 236 (239)
Q Consensus 188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~--~~~~~~~~ 236 (239)
......+|++|+-..+|..|.+.+..++.+|.+-++++... +.|.+.++
T Consensus 51 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~ 101 (299)
T TIGR01136 51 KRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLR 101 (299)
T ss_pred HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHH
Confidence 33445677776554569999999999999999555555543 34544443
No 498
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=49.32 E-value=62 Score=30.93 Aligned_cols=58 Identities=14% Similarity=-0.044 Sum_probs=37.4
Q ss_pred cccccchhhhhhhhhcCCCCCCEEEEEcCCHHHH--HHHHHHHHcCCCeEEEEcCChhhHh
Q 026414 175 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGL--AVAEGAKAAGASRVIGIDIDPKKFD 233 (239)
Q Consensus 175 l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~--~ai~~~~~~G~~~vv~~~~~~~~~~ 233 (239)
...++.|..+++-....+..|.++.|.|+.+.|. +..+++|...+ .|++...--+|-.
T Consensus 206 ~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G~GKT~l~~~lak~s~a-DviVyvg~GERG~ 265 (591)
T TIGR01042 206 ANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNS-DAIVYVGCGERGN 265 (591)
T ss_pred CCCccccchhhhhhccchhcCCeEEEEcCCCcCHHHHHHHHHhccCc-CEEEEEEEeechH
Confidence 3446677777666667788999999997755553 34467777777 4555544444433
No 499
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=49.15 E-value=14 Score=32.94 Aligned_cols=34 Identities=35% Similarity=0.385 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~ 227 (239)
.+..|||.|+|++|.=|++.+.+.|+.++=.+|-
T Consensus 65 k~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~ 98 (427)
T KOG2017|consen 65 KNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDY 98 (427)
T ss_pred CCccEEEEccCCCCCHHHHHHHHcCCCeeccccc
Confidence 4578999999999999999999999866555543
No 500
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=48.92 E-value=36 Score=30.85 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (239)
Q Consensus 194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~ 229 (239)
.+++++|.|+|.+|.-++..++..|. +|..+...+
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 182 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGK-NVRIIQLED 182 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-cEEEEeCCc
Confidence 46899999999999999989999997 777776544
Done!