BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026416
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SWB6|PM36_SOYBN Seed maturation protein PM36 OS=Glycine max GN=PM36 PE=2 SV=1
Length = 229
Score = 338 bits (866), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 161/238 (67%), Positives = 188/238 (78%), Gaps = 10/238 (4%)
Query: 1 MEGKAKEEAGKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVR 60
ME KAK E K G+ +TWL+KHRL+Y GATRHP I++IRDGT+N +SFK WL QDY+FVR
Sbjct: 1 MEEKAKAEQKKIGMTETWLKKHRLLYNGATRHPLIISIRDGTINTASFKTWLAQDYLFVR 60
Query: 61 EFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKA 120
FV F ASVL+KAWKESD S GD EVILGGMA L DEI+WFK EA+KWG+ LS+ VPQ+A
Sbjct: 61 AFVPFVASVLIKAWKESDCS-GDMEVILGGMASLEDEISWFKTEANKWGISLSDVVPQQA 119
Query: 121 NQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGND 180
N+ YC LESLMSP+ +YTVAIT FWAIE VYQESFAHC+E + TPPEL+E C RWGN+
Sbjct: 120 NKNYCGLLESLMSPDAEYTVAITAFWAIETVYQESFAHCIEEGSKTPPELKETCVRWGNE 179
Query: 181 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238
FG+YC SL+ IANR L+KAS D+ LKKAEV L+ VLEHEVEFWNMSRG
Sbjct: 180 AFGKYCQSLQNIANRCLQKAS---------DEELKKAEVMLLSVLEHEVEFWNMSRGN 228
>sp|Q9ASY9|PM36_ARATH Seed maturation protein PM36 homolog OS=Arabidopsis thaliana
GN=At3g16990 PE=1 SV=3
Length = 221
Score = 285 bits (728), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/227 (62%), Positives = 165/227 (72%), Gaps = 10/227 (4%)
Query: 11 KGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVL 70
K GVIDTW+ KHR IY ATRH F+++IRDG+V+ SSF+ WLGQDY+FVR FV F ASVL
Sbjct: 3 KRGVIDTWIDKHRSIYTAATRHAFVVSIRDGSVDLSSFRTWLGQDYLFVRRFVPFVASVL 62
Query: 71 VKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLES 130
++A K+S +S D EV+LGG+A L+DEI WFK+E SKW V+ S VPQ+ANQ Y RFLE
Sbjct: 63 IRACKDSGESS-DMEVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRANQEYGRFLED 121
Query: 131 LMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLK 190
LMS EV Y V +T FWAIEAVYQESFAHCLE TP EL C RWGNDGF QYC S+K
Sbjct: 122 LMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELTGACHRWGNDGFKQYCSSVK 181
Query: 191 KIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237
IA R LE AS +VL +AE L+RVLE EV FW MSRG
Sbjct: 182 NIAERCLENAS---------GEVLGEAEDVLVRVLELEVAFWEMSRG 219
>sp|O59743|YN27_SCHPO Uncharacterized protein C530.07c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC530.07c PE=4 SV=1
Length = 242
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 41/218 (18%)
Query: 28 GATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVI 87
AT+ PFI + +GT +FK+WL +D I+V+ A + E K ++
Sbjct: 21 AATKSPFIEGLANGTAPPGAFKRWLYEDRIYVQGCSLCLAKAINAITHEKGFPKEALDLF 80
Query: 88 LGGMAGLHDEIAWFKKEASKWGVELSETVP-----------QKANQVY------CRFLES 130
LG + E+A F+ + VE+ + P K + Y C+
Sbjct: 81 LGAYNVITPELAHFEARCKESNVEMPKLKPVPTSWEQALQDNKPEEYYHLSAPDCKSYIQ 140
Query: 131 LMSPE---------VDYTVAITVFWAIEAVYQESFAHCLEP---DTNTPPELQEVCQRWG 178
M+ E +DY +A F+ E +Y ++ E N P E+ E + WG
Sbjct: 141 FMTQELFEIPGTSGIDYFMA---FYLNEVIYHRAWKFVRESKQFQKNCPEEM-EFVKWWG 196
Query: 179 NDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKK 216
FG++ +L ++ D+ A D+ KK
Sbjct: 197 QPSFGKFVENLA--------RSIQDVPFTSATVDIAKK 226
>sp|P25052|TENA_BACSU Thiaminase-2 OS=Bacillus subtilis (strain 168) GN=tenA PE=1 SV=1
Length = 236
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 40/222 (18%)
Query: 28 GATRHPFILAIRDGTVNYSSFKKWLGQDYIF------VREFVAFAASVLVKAWKESDDSK 81
G+ HPF+ I DGT+ FK ++ QD + V+ F A A L + + ++
Sbjct: 17 GSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQ 76
Query: 82 GDTEVILGGMAGLHDEIAWFKK--EASKWGVELSETVPQKANQVYCRFLESLMSPEVDYT 139
G E + LH E A + E + + S T + +Y S++S
Sbjct: 77 GTYEAEM----ALHREFAELLEISEEERKAFKPSPTAYSYTSHMY----RSVLSGNFAEI 128
Query: 140 VA--ITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRW----GNDGFGQYCHSLKKIA 193
+A + +W V E HC D P + Q+W G D F Q +++
Sbjct: 129 LAALLPCYWLYYEV-GEKLLHC---DPGHP-----IYQKWIGTYGGDWFRQ---QVEEQI 176
Query: 194 NRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMS 235
NR E A + + ++V K + + +E +FW M+
Sbjct: 177 NRFDELAEN------STEEVRAKMKENFVISSYYEYQFWGMA 212
>sp|Q2JUK1|RF1_SYNJA Peptide chain release factor 1 OS=Synechococcus sp. (strain
JA-3-3Ab) GN=prfA PE=3 SV=1
Length = 361
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 148 IEAVYQESFAHCLEPDTNT-PPELQEVCQ-RWGNDGFGQYCHSLKKIANRLLEKASDDLI 205
+EA +QE +PD T P ELQ + + R + Q H +K+ L K +++L+
Sbjct: 13 VEATFQELTVRLADPDVATDPAELQRIAKARSSLEATVQTFHEWQKLTREL--KQTEELL 70
Query: 206 MGKAGDD----VLKKAEVELIRV 224
A DD + +AE+E +RV
Sbjct: 71 REVASDDPELEAMARAELEQLRV 93
>sp|Q06J67|PSBD_BIGNA Photosystem II D2 protein OS=Bigelowiella natans GN=psbD PE=3
SV=1
Length = 352
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 3 GKAKEEAGKGGVIDTWLRKHRLIYIG 28
GKA+EE G +ID WLR+ R ++IG
Sbjct: 6 GKAEEERGVFDIIDDWLRRDRFVFIG 31
>sp|P44659|Y358_HAEIN Uncharacterized protein HI_0358 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0358 PE=3 SV=1
Length = 215
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 32 HPFILAIRDGTVNYSSFKKWLGQDYIFVREFV-AFAASVL-VKAWKESDDSKGDTEVILG 89
H F+ + GT+ + F+ +L QDY+++ + AFA V K + E + + E+
Sbjct: 19 HEFVQQLAKGTLPKACFQHYLKQDYLYLFHYSRAFALGVFKAKNFAEMETPRKTLEI--- 75
Query: 90 GMAGLHDEIAWFKKEASKWGV---ELSETVPQKANQVYCRFL 128
L EI +WG+ E+ T A Y R+L
Sbjct: 76 ----LCQEIQLHLNYCREWGISEQEIFTTQESAACIAYTRYL 113
>sp|P56319|PSBD_CHLVU Photosystem II D2 protein OS=Chlorella vulgaris GN=psbD PE=3 SV=1
Length = 352
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 3 GKAKEEAGKGGVIDTWLRKHRLIYIG 28
GK +E+ G V+D WLR+ R +++G
Sbjct: 6 GKTQEKRGLFDVVDDWLRRDRFVFVG 31
>sp|Q2JL68|RF1_SYNJB Peptide chain release factor 1 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=prfA PE=3 SV=1
Length = 360
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 148 IEAVYQESFAHCLEPDTNT-PPELQEVCQ-RWGNDGFGQYCHSLKKIANRLLEKASDDLI 205
+EA +QE +PD T P ELQ + + R + Q H +K+ NR L++ +++L+
Sbjct: 13 VEATFQELTVRLADPDVATDPAELQRIAKARSSLEATVQAFHDWQKL-NRDLQQ-TEELL 70
Query: 206 MGKAGD---DVLKKAEVELIR 223
A D + + +AE+E +R
Sbjct: 71 RESASDPELEAMARAELEQLR 91
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis
thaliana GN=At1g06650 PE=2 SV=1
Length = 369
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 95 HDEIAWFKKEASKWG----------VELSETVP-------QKANQVYCRFLESLMSPEVD 137
++ I K+ A+KWG +EL E + +++ +V F S
Sbjct: 81 NNAIEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFL 140
Query: 138 YTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLL 197
Y +F + A ++++F+ + PDT P +L E+C+ D +Y + + L
Sbjct: 141 YLSNFDLFSSPAANWRDTFSCTMAPDTPKPQDLPEICR----DIMMEYSKQVMNLGKFLF 196
Query: 198 EKASDDL 204
E S+ L
Sbjct: 197 ELLSEAL 203
>sp|Q2JRJ5|PSBD_SYNJA Photosystem II D2 protein OS=Synechococcus sp. (strain JA-3-3Ab)
GN=psbD1 PE=3 SV=1
Length = 352
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 3 GKAKEEAGKGGVIDTWLRKHRLIYIG 28
G+A++E G ++D WL++ R ++IG
Sbjct: 6 GRARQERGWFDIVDDWLKRDRFVFIG 31
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,689,024
Number of Sequences: 539616
Number of extensions: 3904788
Number of successful extensions: 8754
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8743
Number of HSP's gapped (non-prelim): 11
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)