Query 026416
Match_columns 239
No_of_seqs 117 out of 931
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0819 TenA Putative transcri 100.0 1.4E-55 3.1E-60 369.3 24.9 212 12-238 1-217 (218)
2 PRK14713 multifunctional hydro 100.0 1.6E-50 3.4E-55 381.3 26.4 212 10-239 316-529 (530)
3 PRK09517 multifunctional thiam 100.0 1.2E-48 2.6E-53 380.9 26.3 215 5-238 537-752 (755)
4 PF03070 TENA_THI-4: TENA/THI- 100.0 3.3E-49 7.1E-54 330.7 17.7 204 19-237 1-209 (210)
5 PTZ00347 phosphomethylpyrimidi 100.0 1.5E-46 3.2E-51 352.6 24.6 208 9-238 8-219 (504)
6 KOG2598 Phosphomethylpyrimidin 100.0 9.6E-28 2.1E-32 213.4 18.4 208 11-237 308-521 (523)
7 COG5424 Pyrroloquinoline quino 99.3 2E-10 4.4E-15 96.1 17.3 208 10-237 7-227 (242)
8 PRK05157 pyrroloquinoline quin 99.2 2.5E-09 5.3E-14 91.3 17.4 195 11-237 11-229 (246)
9 TIGR02111 PQQ_syn_pqqC coenzym 99.1 1.8E-08 3.9E-13 85.4 18.9 195 14-236 6-221 (239)
10 CHL00168 pbsA heme oxygenase; 97.5 0.017 3.6E-07 49.6 17.5 118 13-144 4-122 (238)
11 cd00232 HemeO Heme oxygenase c 97.5 0.021 4.6E-07 47.3 17.8 168 13-196 1-174 (203)
12 PF01126 Heme_oxygenase: Heme 96.5 0.12 2.7E-06 42.7 13.6 125 12-150 1-127 (205)
13 COG5398 Heme oxygenase [Inorga 95.4 0.19 4E-06 42.1 9.7 108 14-133 3-112 (238)
14 PF12981 DUF3865: Domain of Un 95.3 0.89 1.9E-05 38.2 13.2 187 28-234 20-225 (231)
15 PF14518 Haem_oxygenas_2: Iron 92.3 0.42 9.1E-06 35.2 5.7 61 96-156 17-81 (106)
16 PF01320 Colicin_Pyocin: Colic 40.3 43 0.00093 24.0 3.4 40 174-227 7-46 (85)
17 PF02609 Exonuc_VII_S: Exonucl 35.9 1.2E+02 0.0025 19.3 5.3 35 182-227 1-35 (53)
18 PRK14067 exodeoxyribonuclease 29.4 1.6E+02 0.0035 20.7 4.9 37 180-227 7-43 (80)
19 PF15565 Imm16: Immunity prote 28.0 1E+02 0.0022 23.0 3.8 38 185-231 14-51 (106)
20 PF02840 Prp18: Prp18 domain; 27.8 75 0.0016 25.1 3.2 83 33-131 45-134 (144)
21 PF02909 TetR_C: Tetracyclin r 26.1 1.4E+02 0.003 22.2 4.5 33 10-42 4-36 (139)
22 PRK00977 exodeoxyribonuclease 24.0 2.2E+02 0.0049 19.9 4.8 37 180-227 10-46 (80)
23 PRK14068 exodeoxyribonuclease 23.7 2.4E+02 0.0052 19.6 4.9 37 180-227 6-42 (76)
24 PRK14064 exodeoxyribonuclease 23.7 2.4E+02 0.0052 19.5 4.9 37 180-227 6-42 (75)
25 TIGR01280 xseB exodeoxyribonuc 23.1 2.5E+02 0.0053 19.0 4.8 36 181-227 2-37 (67)
26 PF12362 DUF3646: DNA polymera 22.8 1.1E+02 0.0025 23.1 3.3 34 6-39 72-105 (117)
27 KOG2808 U5 snRNP-associated RN 21.8 3.3E+02 0.0071 24.5 6.4 43 33-75 229-276 (341)
28 PRK14066 exodeoxyribonuclease 21.6 2.9E+02 0.0062 19.2 5.0 36 181-227 5-40 (75)
29 PF04340 DUF484: Protein of un 20.9 1.4E+02 0.0031 24.9 3.9 59 40-103 3-61 (225)
No 1
>COG0819 TenA Putative transcription activator [Transcription]
Probab=100.00 E-value=1.4e-55 Score=369.33 Aligned_cols=212 Identities=21% Similarity=0.309 Sum_probs=196.1
Q ss_pred CchHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHH
Q 026416 12 GGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM 91 (239)
Q Consensus 12 ~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~ 91 (239)
+.|++.|++.++|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++|+|+ .+.+..+...+
T Consensus 1 ~~f~~~L~~~~~~~W~~~~~H~FV~~L~~GtL~~~~F~~YL~QDy~YL~~~~ra~~~~~~ka~~-----~~~~~~~~~~~ 75 (218)
T COG0819 1 MMFSEELIRAAQPIWQKYIEHPFVQELADGTLPREKFQFYLVQDYLYLVNFARALALLASKAPD-----LELMEELAKII 75 (218)
T ss_pred CchHHHHHHHhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999 78888888888
Q ss_pred hh-HHHHHHHHHHHHHHcCCCC---CCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCC-CC
Q 026416 92 AG-LHDEIAWFKKEASKWGVEL---SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NT 166 (239)
Q Consensus 92 ~~-~~~E~~~~~~~~~~~gi~~---~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~-~~ 166 (239)
.. +.+|+.+|+++++++||+. .+.+++|+|.+||+||++++ ..|++.++++|+.||+|+|.+||+++..... +.
T Consensus 76 ~~~~~~E~~~h~~~~~~lgis~~~~~~~~~~~~~~aYt~ym~~~~-~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~ 154 (218)
T COG0819 76 QFLVEGEMELHERLAEELGISLDELLKTEPSPANKAYTRYLLDTA-YSGSFAELLAALLPCLWGYAEIGKRLKAKPRASP 154 (218)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 65 4679999999999999997 35789999999999999995 7888999999999999999999998765432 23
Q ss_pred CchHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhccC
Q 026416 167 PPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238 (239)
Q Consensus 167 ~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~~ 238 (239)
+++|++||++|+|++|++.|+.+++++|++++..++ +++++|..+|+++|++|..||||||+.
T Consensus 155 ~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~---------~~~~~l~~iF~~ss~~E~~Fwd~a~~~ 217 (218)
T COG0819 155 NPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSE---------EELEKLKQIFLTASRFELAFWDMAYRL 217 (218)
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999999999999998888 899999999999999999999999974
No 2
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=100.00 E-value=1.6e-50 Score=381.30 Aligned_cols=212 Identities=17% Similarity=0.194 Sum_probs=195.4
Q ss_pred ccCchHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHH
Q 026416 10 GKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILG 89 (239)
Q Consensus 10 ~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~ 89 (239)
+.++|+++|++.++|+|+++++||||++|++||||.++|++||+|||+||.+|+|+++++++|+++ .+++..++.
T Consensus 316 ~~~~fs~~L~~~~~~~w~~~~~HpFv~~L~~GtL~~~~F~~Yl~QD~~yL~~~~r~~a~~~aka~~-----~e~~~~~~~ 390 (530)
T PRK14713 316 PAGPFTAALWQASGPIREAIEDLPFVRALADGTLPEEAFEFYLAQDALYLNGYSRALARLAALAPD-----PAEQVFWAQ 390 (530)
T ss_pred CCccHHHHHHHhhHHHHHHHHcChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHH
Confidence 556899999999999999999999999999999999999999999999999999999999999999 788888888
Q ss_pred HHhh-HHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCC-CCCCC
Q 026416 90 GMAG-LHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEP-DTNTP 167 (239)
Q Consensus 90 ~~~~-~~~E~~~~~~~~~~~gi~~~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~-~~~~~ 167 (239)
.+.. +.+|+++|+++++.+|++ .+++|+|.+|++||++++ .++++.++++|++||+|+|.+||+++... ..+++
T Consensus 391 ~~~~~~~~E~~~h~~~~~~~~~~---~~~~p~~~aY~~~l~~~a-~~~~~~~~l~AllPC~~~Y~~ig~~l~~~~~~~~~ 466 (530)
T PRK14713 391 SAQACLEVESELHRSWLGDRDAD---TAPSPVTLAYTDFLLARA-AGGSYAVGAAAVLPCFWLYAEVGAELHARAGNPDD 466 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc---CCCChHHHHHHHHHHHHH-hcCCHHHHHHHHHhHHHHHHHHHHHHHhhccCCCC
Confidence 8754 678999999999999974 689999999999999994 67899999999999999999999987542 12234
Q ss_pred chHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhccCC
Q 026416 168 PELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA 239 (239)
Q Consensus 168 ~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~~~ 239 (239)
++|++||++|++++|.+.|+++++++|++++.+++ +++++|+++|+++|+||++||||||+++
T Consensus 467 ~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~---------~~~~~~~~~F~~a~~~E~~Fwd~A~~~~ 529 (530)
T PRK14713 467 HPYAEWLQTYADPEFAAATRRAIAFVDRAFRAASP---------AERAAMARAFLTACRYELEFFDQARRRA 529 (530)
T ss_pred ChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 68999999999999999999999999999999998 8999999999999999999999999875
No 3
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.2e-48 Score=380.92 Aligned_cols=215 Identities=17% Similarity=0.157 Sum_probs=196.5
Q ss_pred cccccccCchHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHH
Q 026416 5 AKEEAGKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDT 84 (239)
Q Consensus 5 ~~~~~~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~ 84 (239)
|...+...+|+++||+.+.|+|+++++||||++|++||||.++|++||+|||+||.+|+|+++++++|+|+ .+++
T Consensus 537 ~~~~~~~~~f~~~L~~~~~~~w~~~~~HPFv~~L~~GtL~~e~F~~YL~QD~~YL~~yar~~a~~~aka~~-----~~~~ 611 (755)
T PRK09517 537 APRIEPAGPFTRALWEASGDIIAEINDSDFIRMLGDGTLRRPEFDFYIDQDAQYLRQYSRALARLSSIAPD-----SHAQ 611 (755)
T ss_pred ccccCCCCChHHHHHHHhHHHHHHHhcChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHH
Confidence 34455566899999999999999999999999999999999999999999999999999999999999999 7888
Q ss_pred HHHHHHHh-hHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCC
Q 026416 85 EVILGGMA-GLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPD 163 (239)
Q Consensus 85 ~~l~~~~~-~~~~E~~~~~~~~~~~gi~~~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~ 163 (239)
..+...+. .+.+|+.+|+++++.+|++ .+++|+|.+|++||++++ .+++++++++|++||+|+|.+||+++....
T Consensus 612 ~~~~~~~~~~~~~E~~~h~~~~~~~~~~---~~~~p~~~aYt~~l~~~a-~~g~~~~~laAllPC~w~Y~~ig~~l~~~~ 687 (755)
T PRK09517 612 VEWAQSAAECIVVEAELHRSYLSGKEAP---SAPSPVTMAYTDFLIART-YTEDYVVGVAAVLPCYWLYAEIGLMLAEQN 687 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcC---CCCChHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888875 4688999999999999974 688999999999999995 678999999999999999999999876432
Q ss_pred CCCCchHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhccC
Q 026416 164 TNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238 (239)
Q Consensus 164 ~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~~ 238 (239)
. .+++|++||++|++++|.+.|+++++++|++++.+++ +++++|+++|+++|+||++||||||+.
T Consensus 688 ~-~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~---------~~~~~l~~~F~~a~~lE~~Fwd~A~~~ 752 (755)
T PRK09517 688 H-DEHPYKDWLNTYSGEEFIAGTRAAIARVEKALENAGP---------EQRVDAARAFLSASVHEREFFDQATRH 752 (755)
T ss_pred C-CCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 2457999999999999999999999999999999998 899999999999999999999999963
No 4
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=100.00 E-value=3.3e-49 Score=330.72 Aligned_cols=204 Identities=23% Similarity=0.349 Sum_probs=184.9
Q ss_pred HHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHH-hhHHHH
Q 026416 19 LRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM-AGLHDE 97 (239)
Q Consensus 19 ~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~-~~~~~E 97 (239)
++++.|+|+++++||||++|++||||.++|++||+||++||.+|+|+++.+++|+|+ .+.+..++..+ ..+.+|
T Consensus 1 ~~~~~~~w~~~~~HPFv~~l~~GtL~~~~f~~Yl~QD~~yl~~~~r~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~e 75 (210)
T PF03070_consen 1 HQKAEPIWEAILNHPFVQELADGTLPKEAFRYYLIQDYHYLKHFARALALLASKAPD-----PEEQRELLSRLIQEIEEE 75 (210)
T ss_dssp SHHTHHHHHHHHTSHHHHHHHTTESEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----HHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHCCHHHHHHhCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999 66665666655 567889
Q ss_pred HHHHHHHHHHcCCCCC---CCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCchHHHH
Q 026416 98 IAWFKKEASKWGVELS---ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NTPPELQEV 173 (239)
Q Consensus 98 ~~~~~~~~~~~gi~~~---~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~-~~~~~y~~W 173 (239)
+++|+++++.+||+.+ +.+++|+|++|++||.+++ ..++++++++|++||+|+|.+||+++..... +++++|++|
T Consensus 76 ~~~~~~~~~~~gi~~~~~~~~~~~p~~~~y~~~l~~~a-~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~~~~~~~~y~~w 154 (210)
T PF03070_consen 76 LELHEDFAEELGISREDLENIEPSPATRAYTDFLLSLA-QTGSLAEGLAALLPCEWIYAEIGKRLAEKLRAPEDNPYQEW 154 (210)
T ss_dssp HHHHHHHHHHTTSHHHHHHHSTC-HHHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSSHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHhhhhhhHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccHHHH
Confidence 9999999999999985 3789999999999999994 6789999999999999999999988764322 456789999
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhcc
Q 026416 174 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237 (239)
Q Consensus 174 i~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~ 237 (239)
|+.|++++|...|+.+.+++|+++...++ ++++++.++|+++|++|++|||+||+
T Consensus 155 i~~y~~~~f~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~f~~~~~~E~~Fwd~a~~ 209 (210)
T PF03070_consen 155 IDMYASEEFEAFVEWLEELLDELAAEASD---------EERERLEEIFRRSCELEYDFWDAAYN 209 (210)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHTHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988887 78999999999999999999999985
No 5
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.5e-46 Score=352.63 Aligned_cols=208 Identities=13% Similarity=0.205 Sum_probs=184.2
Q ss_pred cccCchHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHH
Q 026416 9 AGKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVIL 88 (239)
Q Consensus 9 ~~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~ 88 (239)
-..++|+++||+.++|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++|+++ .+++..++
T Consensus 8 ~~~~~fs~~L~~~~~~~~~~~~~HpFv~~l~~GtL~~~~F~~Yl~QD~~Yl~~~~r~~a~~~~ka~~-----~~~~~~~~ 82 (504)
T PTZ00347 8 PVFGGLSEALWKENQDLAMMSLHLPFVQGLGDGTLDQNAFRTYIAQDTLYLNGYIRILSYCITKSDV-----TATGGGLL 82 (504)
T ss_pred CCCCCHHHHHHHhHHHHHHHHhCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHH
Confidence 3566899999999999999999999999999999999999999999999999999999999999999 78888888
Q ss_pred HHHh-hHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHHHhhccCCC-C
Q 026416 89 GGMA-GLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDY--TVAITVFWAIEAVYQESFAHCLEPD-T 164 (239)
Q Consensus 89 ~~~~-~~~~E~~~~~~~~~~~gi~~~~~~~~pa~~~Y~~~l~~~a~~~~~~--~~~l~a~~~c~~~Y~~i~~~~~~~~-~ 164 (239)
..+. .+++|..+|+++++. .+..+++|+|++|++||++++ ..+++ +++++|++||+|+|.+||+++.... .
T Consensus 83 ~~~~~~~~~e~~~h~~~~~~----~~~~~~~p~~~aY~~~l~~~a-~~g~~~~~~~l~Al~pC~~~Y~~ig~~l~~~~~~ 157 (504)
T PTZ00347 83 ELLKGVLEELKNCHHHYIDN----PDAAGPEAACRKYVDFLLASG-NADTLGPSVVIAAVIPCARLYAWVGQELTNEVEL 157 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hhccCCCHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 8875 457788899998742 235678999999999999995 66788 8999999999999999999875421 1
Q ss_pred CCCchHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhccC
Q 026416 165 NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238 (239)
Q Consensus 165 ~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~~ 238 (239)
+.+++|++||++|++++|.+.|.++++++|+++. + +++++++++|+++|++|++||||||+.
T Consensus 158 ~~~~~y~~Wi~~y~~~~f~~~~~~~~~~ld~~~~---~---------~~~~~~~~~F~~~~~~E~~Fw~~Ay~~ 219 (504)
T PTZ00347 158 TESHPFRRWLLSYSDEPINTSVEQLESLLDKYIR---P---------GEFSEVAQAYRRAMELEYDFFDSFGYC 219 (504)
T ss_pred CCCChHHHHHHhcCCHHHHHHHHHHHHHHHHHhc---h---------hhHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 2346899999999999999999999999999864 2 567889999999999999999999973
No 6
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.96 E-value=9.6e-28 Score=213.45 Aligned_cols=208 Identities=16% Similarity=0.242 Sum_probs=181.7
Q ss_pred cCchHHHHHH--HcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHH
Q 026416 11 KGGVIDTWLR--KHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVIL 88 (239)
Q Consensus 11 ~~~~~~~L~~--~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~ 88 (239)
...|..-|+. +..|.|..+++|+|+.+++.|||+...|..||.|||+||.+|+|+++....|.+. .+++..-+
T Consensus 308 ~g~f~~yl~~hpkv~p~W~s~inh~fv~~~~~Gtl~~~~fq~~l~qdy~ylIn~ara~~v~g~ks~~-----i~~ie~~~ 382 (523)
T KOG2598|consen 308 PGSFFNYLINHPKVKPKWDSYINHEFVKQLADGTLERKKFQDYLEQDYLYLINYARAHGVAGSKSPT-----IEDIEKEA 382 (523)
T ss_pred cHHHHHHHhhCcccChhHHHHhhHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc-----HHHHHHHh
Confidence 3567777775 6669999999999999999999999999999999999999999999999999999 66665555
Q ss_pred HHHhhHHHHHHHHHHHHHHcCCCCC---CCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCC-
Q 026416 89 GGMAGLHDEIAWFKKEASKWGVELS---ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT- 164 (239)
Q Consensus 89 ~~~~~~~~E~~~~~~~~~~~gi~~~---~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~- 164 (239)
..++.+.+|+..|.++++.+|++.. .-+++|++++|.+|+.++ +..++|.+...|+.| |..+...+...-.
T Consensus 383 ~iv~~v~~e~~~h~~l~e~~Gv~~~d~~~~~~~pa~~Aysry~~d~-~~~g~~~~l~~a~~p----y~~~l~~lk~~~~a 457 (523)
T KOG2598|consen 383 VIVQHVREELVQHVRLREEYGVSDPDYLSCKKGPALRAYSRYINDT-GRRGNWQELVIALNP----YVFALDKLKDEITA 457 (523)
T ss_pred HHHHHHHhhccchHHHHHHhCCCchhhhhcCccHHHHHHHHHhhhh-hcccChhhhhhhhch----hhHHHHHHHhhccc
Confidence 5556678899999999999999974 234589999999999999 578899999999999 6666666554322
Q ss_pred CCCchHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhcc
Q 026416 165 NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237 (239)
Q Consensus 165 ~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~ 237 (239)
...++|.+|++.|++.++.+.++.....++...+..++ ++.+.+..+|.++|.+|..||+.++.
T Consensus 458 s~g~vy~~w~e~~~~~~~~~ai~~g~~~l~~i~~~~~p---------e~~~~l~~i~~~~~~~Et~fw~t~~~ 521 (523)
T KOG2598|consen 458 SEGSVYVEWVETYSSSWYTSAIDEGERLLEHIVETLSP---------EKLQTLVTIFARVTEFETLFWTTALE 521 (523)
T ss_pred CCCCceeehhhhccchhHHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 23468999999999999999999999999999999999 99999999999999999999999874
No 7
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=99.31 E-value=2e-10 Score=96.11 Aligned_cols=208 Identities=12% Similarity=0.147 Sum_probs=147.6
Q ss_pred ccCchHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHH
Q 026416 10 GKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILG 89 (239)
Q Consensus 10 ~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~ 89 (239)
..++|-.+|....+... -..|||.+.+.+|.|++++++-|++.-|+|+++|.+.++.+++|+++ .+..+..++
T Consensus 7 ~~~~~~~~l~~i~~~~~--~~~HpF~~~m~~g~lt~~ql~~yvi~~~~~~k~~p~~lSail~rcdd-----~~~r~~~le 79 (242)
T COG5424 7 DRLSFWARLRFIGQFYY--DLPHPFYVAMQEGELTKEQLQGYVINRYYYQKNFPLYLSAILARCDD-----DDVRREWLE 79 (242)
T ss_pred hhHHHHHHHHHHHHHhc--cCCCHHHHHHHccCCCHHHHHHHHHhhhHHHHhhhHHHHHHHhcCCc-----HhHHHHHHH
Confidence 34566777776666532 38899999999999999999999999999999999999999999999 555566665
Q ss_pred HHh----hHH--HHHHHHHHHHHHcCCCCC---CCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcc
Q 026416 90 GMA----GLH--DEIAWFKKEASKWGVELS---ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCL 160 (239)
Q Consensus 90 ~~~----~~~--~E~~~~~~~~~~~gi~~~---~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~ 160 (239)
.+. ... +.+++..++...+|++++ ...|.|.++.=+..-...+ .+.+|.+++++++..|.+--.|.....
T Consensus 80 ni~de~~g~~e~~hidlwlr~aeAlGvs~eei~s~eplp~~~~av~~~~~~a-~~~s~~~~~aslyt~El~apri~~~ki 158 (242)
T COG5424 80 NIMDEDNGYNEPNHIDLWLRLAEALGVSREEILSHEPLPSTRFAVDTWVRFA-TEKSWLEGAASLYTYELVAPRISVEKI 158 (242)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHcCCCHHHHhhcCCCHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhccHHHHHHc
Confidence 541 223 678999999999999985 4569999999999999994 788999999999987766555543211
Q ss_pred CCC---CCCCc-hHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhc
Q 026416 161 EPD---TNTPP-ELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR 236 (239)
Q Consensus 161 ~~~---~~~~~-~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~ 236 (239)
... ++... .-..|+.-+..-+ ...+....+++.++... . +-..++..+-.+++..=+.|-|..+
T Consensus 159 ~gl~~~~~~~~~a~~~yf~~h~eaD-~~Ha~Ealkiv~~~~~t--~---------E~~~~~~~~~~~~~D~lw~fLda~~ 226 (242)
T COG5424 159 SGLPYFNGFSDAAAYAYFREHLEAD-VRHAEEALKIVLELAGT--R---------ELQDQVLDALQKSLDVLWLFLDARM 226 (242)
T ss_pred cCchhhcCcchHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhc--h---------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 11110 0113333322111 33444556666666542 2 4556778888888888888888765
Q ss_pred c
Q 026416 237 G 237 (239)
Q Consensus 237 ~ 237 (239)
.
T Consensus 227 ~ 227 (242)
T COG5424 227 Q 227 (242)
T ss_pred h
Confidence 3
No 8
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=99.18 E-value=2.5e-09 Score=91.29 Aligned_cols=195 Identities=9% Similarity=0.065 Sum_probs=137.5
Q ss_pred cCchHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHH
Q 026416 11 KGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGG 90 (239)
Q Consensus 11 ~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~ 90 (239)
.+.|.++|.+... ..-.+|||-+.+.+|+|+++.++.|..|=|+|-..+.+..+-+++++|| .+..+.+++.
T Consensus 11 ~~eF~~~L~~~~~---~yh~~HPF~~~~~~Gklt~~qlq~wa~nrYyyq~~~P~kdaaI~S~c~D-----~e~Rr~w~~r 82 (246)
T PRK05157 11 PEEFEAALRAIGA---RYHIHHPFHRLLHEGKLTREQIQAWVANRFYYQINIPLKDAAILSNCPD-----RETRREWRQR 82 (246)
T ss_pred HHHHHHHHHHHHH---hhcccChHHHHHHcCCCCHHHHHHHHHHhchhhccchHHHHHHHHcCCC-----HHHHHHHHHH
Confidence 3457788877763 2233899999999999999999999999999999999999999999999 6666666655
Q ss_pred H-hh-----HHHHHHHHHHHHHHcCCCCC---CC-CCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcc
Q 026416 91 M-AG-----LHDEIAWFKKEASKWGVELS---ET-VPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCL 160 (239)
Q Consensus 91 ~-~~-----~~~E~~~~~~~~~~~gi~~~---~~-~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~ 160 (239)
| +. -.+.++.+.++.+.+|++.+ +. ...|.|+..++-....+ .+.+|.+++++++. |.---.|-+.
T Consensus 83 i~d~dG~~~~~ghie~Wlrf~ealGl~re~v~s~~~~lP~tr~aVday~~~~-r~~~~~eavas~lt-E~~~P~I~~~-- 158 (246)
T PRK05157 83 ILDHDGDGGGEGGIERWLRLGEAVGLDRDYVLSLRGVLPGVRFAVDAYVNFA-RRAPWLEAVASSLT-ELFAPQIHQE-- 158 (246)
T ss_pred HHHhcCCCCCCCcHHHHHHHHHHcCCCHHHHhccccCChHHHHHHHHHHHHH-ccCCHHHHHHHHHH-HHhhhHHHHH--
Confidence 4 11 12368999999999999974 34 37799999999888884 66799999998765 3222222211
Q ss_pred CCCCCCCchHHHHhhhcC--ChH----HHHH--------HHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHH
Q 026416 161 EPDTNTPPELQEVCQRWG--NDG----FGQY--------CHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLE 226 (239)
Q Consensus 161 ~~~~~~~~~y~~Wi~~y~--s~~----f~~~--------v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~ 226 (239)
....|-+.|. +++ |... -+.+..+++. + .++ ++.+++.++-...|.
T Consensus 159 --------ri~gl~~~Y~~~~~e~l~yF~~h~~~a~~Dvehal~~~l~~-~--~t~---------e~q~~al~al~~k~d 218 (246)
T PRK05157 159 --------RLAGWPEHYPWIDPEGLAYFRSRLTQAPRDVEHGLAYVLDH-A--TTR---------EQQERALEALQFKLD 218 (246)
T ss_pred --------HHHHHHHHCCCCCHHHHHHHHHHhhccchhHHHHHHHHHHH-c--CCH---------HHHHHHHHHHHHHHH
Confidence 1233444432 222 2111 1112222222 2 244 678889999999999
Q ss_pred HHHHhchhhcc
Q 026416 227 HEVEFWNMSRG 237 (239)
Q Consensus 227 ~E~~Fwd~a~~ 237 (239)
.=+.|+|+.|.
T Consensus 219 ~Lw~~LDai~~ 229 (246)
T PRK05157 219 VLWSMLDALYM 229 (246)
T ss_pred HHHHHHHHHHH
Confidence 99999998653
No 9
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=99.10 E-value=1.8e-08 Score=85.39 Aligned_cols=195 Identities=13% Similarity=0.119 Sum_probs=129.8
Q ss_pred hHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHH-h
Q 026416 14 VIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM-A 92 (239)
Q Consensus 14 ~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~-~ 92 (239)
|-..|...... .--.+|||-+.+.+|+|+++.++.|..|-|+|...+.+..+-+++++|| .+..+.++..| +
T Consensus 6 f~~~Lr~~~~~--~yh~~HPF~~~~~~GkLt~~ql~~wa~nrYyyq~~iP~kdAAi~s~c~D-----~e~Rr~wl~ri~D 78 (239)
T TIGR02111 6 FEAALRDIGAR--RYHDLHPFHALLHDGKLTRDQVQAWVLNRYYYQANIPLKDAAILARCPD-----PQLRRIWRQRILD 78 (239)
T ss_pred HHHHHHHHhcc--cccccCcHHHHHhcCCCCHHHHHHHHHHhhhhhhcccHHHHHHHHcCCC-----HHHHHHHHHHHHH
Confidence 44444443321 2335699999999999999999999999999999999999999999999 66666676554 2
Q ss_pred --h-H--HHHHHHHHHHHHHcCCCCC---CCC-CchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCC
Q 026416 93 --G-L--HDEIAWFKKEASKWGVELS---ETV-PQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPD 163 (239)
Q Consensus 93 --~-~--~~E~~~~~~~~~~~gi~~~---~~~-~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~ 163 (239)
. . .+.++...++.+.+|++.+ +.+ ..|+|+..++-....+ .+.++.+++++++. |.---+|-+.
T Consensus 79 hdG~~~~~ggie~WlrfaealGl~re~v~s~~~~lP~trfaVday~~f~-r~~~~~eavasslT-E~f~P~I~~~----- 151 (239)
T TIGR02111 79 HDGDHEEDGGIERWLRLAEAVGLDREYVLSTRGVLPGTRFAVDAYVHFV-REKSLLEAIASSLT-ELFAPQIHSE----- 151 (239)
T ss_pred hcCCCCCCCcHHHHHHHHHHhCCCHHHHhcccCCCHHHHHHHHHHHHHH-hcCCHHHHHHHHHH-HHHhHHHHHH-----
Confidence 1 1 1368999999999999974 333 4788987777766663 66799999998765 4332233221
Q ss_pred CCCCchHHHHhhhc--CChH-HHHHHHHHH----HH---HHHHHhhc-ChhhhcccCcHHHHHHHHHHHHHHHHHHHHhc
Q 026416 164 TNTPPELQEVCQRW--GNDG-FGQYCHSLK----KI---ANRLLEKA-SDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 232 (239)
Q Consensus 164 ~~~~~~y~~Wi~~y--~s~~-f~~~v~~l~----~~---ld~~~~~~-~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fw 232 (239)
....|.+.| .+++ +.=+-.++. +. ++=..+.+ ++ ++.+++.++-...|.-=+.|+
T Consensus 152 -----ri~gl~~~Y~~~~~e~l~yF~~r~~qa~rd~e~~l~~~l~~~~t~---------e~Q~~~l~al~fk~dvLw~~L 217 (239)
T TIGR02111 152 -----RVAGMLQHYDFIDDAALAYFRKRLTQAPRDVEFGLDYVLDHATTR---------EKQEAALEALTFKCDVLWAQL 217 (239)
T ss_pred -----HHHhHHHHCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 122344433 2333 111111111 11 11111112 44 677889999999999999999
Q ss_pred hhhc
Q 026416 233 NMSR 236 (239)
Q Consensus 233 d~a~ 236 (239)
|..|
T Consensus 218 Dal~ 221 (239)
T TIGR02111 218 DALY 221 (239)
T ss_pred HHHH
Confidence 8765
No 10
>CHL00168 pbsA heme oxygenase; Provisional
Probab=97.50 E-value=0.017 Score=49.56 Aligned_cols=118 Identities=12% Similarity=0.108 Sum_probs=78.5
Q ss_pred chHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHh
Q 026416 13 GVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMA 92 (239)
Q Consensus 13 ~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~ 92 (239)
+++.+|.+..+..=+.+-+.+|++.+..|.++.+.++.+|.|-|..-...-..+..... ++ ....+. ..
T Consensus 4 ~ls~~Lr~~T~~~H~~aE~~~f~k~ll~g~~~~~~Y~~ll~~ly~vY~aLE~~l~~~~~---~~------~~~~~~--~p 72 (238)
T CHL00168 4 NLATQLREGTTKSHSMAENVSFVKSFLGGVIDKKSYRKLVANLYFVYSAIEEEIEKNKE---HP------LIKPIY--FQ 72 (238)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHccC---Cc------cccccc--ch
Confidence 68999999999999999999999999999999999999999998877766655554431 10 000000 00
Q ss_pred hHHHHHHHHHHHHHHcCCCC-CCCCCchHhHHHHHHHHHhcCCCccHHHHHHH
Q 026416 93 GLHDEIAWFKKEASKWGVEL-SETVPQKANQVYCRFLESLMSPEVDYTVAITV 144 (239)
Q Consensus 93 ~~~~E~~~~~~~~~~~gi~~-~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a 144 (239)
.+.+--.+-+++.--+|-+. +..+|+|++..|++.+..++ .+ .+.+|+|
T Consensus 73 eL~R~~aLe~DL~~l~G~~w~~~~~p~pa~~~Yv~rI~~~~-~~--~P~~LvA 122 (238)
T CHL00168 73 ELNRKESLEKDLNYYYGDDWKSIIEPSPATKIYVDRIHKIS-AK--KPELLIA 122 (238)
T ss_pred hhhhhHHHHHHHHHHcCCCccccCCCChHHHHHHHHHHHHh-hc--ChHHHHH
Confidence 11111122222222335443 34678999999999999995 32 3445555
No 11
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=97.49 E-value=0.021 Score=47.30 Aligned_cols=168 Identities=13% Similarity=0.107 Sum_probs=102.8
Q ss_pred chHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHh
Q 026416 13 GVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMA 92 (239)
Q Consensus 13 ~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~ 92 (239)
+++++|.....+.=+.+-+|||++.|..|+++.+.++.||.+-|.+....-..+......... . .... .
T Consensus 1 ~~~~~Lr~~T~~~H~~~e~~~~~~~l~~~~~s~~~Y~~~L~~~~~~~~~lE~~l~~~~~~~~~------~--~~~~---~ 69 (203)
T cd00232 1 SLSEELRAATRQLHEEAENLVFMKDLLKGFLSREGYARFLANLYLVYRALEALLEASKDNPYL------A--PLYL---P 69 (203)
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHccCCccc------c--cccC---c
Confidence 478899999999999999999999999999999999999999999999888877765432111 0 0000 0
Q ss_pred hHHHHHHHHHHHHHHcCCCCC--CCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH----HHHhhccCCCCCC
Q 026416 93 GLHDEIAWFKKEASKWGVELS--ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQ----ESFAHCLEPDTNT 166 (239)
Q Consensus 93 ~~~~E~~~~~~~~~~~gi~~~--~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~----~i~~~~~~~~~~~ 166 (239)
.. .-..+.++-++.+|.+.. ..+|.|++ .|.+++...+ ..+...++.+++..+-+=. .|.+.+.+....
T Consensus 70 ~~-~r~~~L~~DL~~lg~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~lg~~YV~egs~l~GG~~i~~~l~~~~~~- 144 (203)
T cd00232 70 EL-ERAAALEKDLAYLGGSDWRVREPPLPAA-AYAARLREIA--EENPALLLGHAYVRYGADLSGGQVLAKIAQRALLL- 144 (203)
T ss_pred cc-cchHHHHHHHHHHhCCCccccCCCChHH-HHHHHHHHHH--hcCHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCC-
Confidence 00 112333444556777653 23455677 9999888774 3456667777766543221 111122111111
Q ss_pred CchHHHHhhhcCChHHHHHHHHHHHHHHHH
Q 026416 167 PPELQEVCQRWGNDGFGQYCHSLKKIANRL 196 (239)
Q Consensus 167 ~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~ 196 (239)
++.=..++..|+.++-...-..+...+|.+
T Consensus 145 ~~~~~~f~~~~g~~~~~~~w~~f~~~l~~~ 174 (203)
T cd00232 145 EGKGLAFYAFHGIADRGLFKREFREALDAL 174 (203)
T ss_pred CCccCccccCCCcCCHHHHHHHHHHHHhcC
Confidence 111124566665333445555666777765
No 12
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1.14.99.3 from EC) (HO) [] is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide []. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested [] that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae []. A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem []. There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.; GO: 0004392 heme oxygenase (decyclizing) activity, 0006788 heme oxidation, 0055114 oxidation-reduction process; PDB: 1J77_A 1P3U_A 1P3V_A 1P3T_A 1WNW_B 1WNX_B 1IW1_B 1WNV_C 1V8X_A 1WZG_B ....
Probab=96.48 E-value=0.12 Score=42.73 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=82.5
Q ss_pred CchHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHH
Q 026416 12 GGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM 91 (239)
Q Consensus 12 ~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~ 91 (239)
|+|+++|.+...+.=+.+-+++|+..+..|.++.+.+..+|.+-|.+....-..+........- ... ...
T Consensus 1 ~~l~~~Lr~~T~~~H~~~e~~~~~~~l~~~~~~~~~Y~~~L~~~~~~y~~lE~~l~~~~~~~~~------~~~--~~~-- 70 (205)
T PF01126_consen 1 MSLSQRLREATRDLHERLEKSPFMKDLFAGDLSRDDYARFLQAFYHVYRALEAALDRNRDDPAL------APL--YFP-- 70 (205)
T ss_dssp -SHHHHHHHHTHHHHHHHHTSHHHHHHHTTSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTT------GGG--S-G--
T ss_pred CcHHHHHHHHHHHHHHHHHcchhHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc------ccc--cCc--
Confidence 6899999999999999999999999999999999999999999999988877666665332211 000 000
Q ss_pred hhHHHHHHHHHHHHHHcCCCC--CCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Q 026416 92 AGLHDEIAWFKKEASKWGVEL--SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEA 150 (239)
Q Consensus 92 ~~~~~E~~~~~~~~~~~gi~~--~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~ 150 (239)
.+.+ ....++-+..++.+. +..++.|++.+|+.++..++ .. +...+++.++..+-
T Consensus 71 -~l~R-~~~L~~DL~~l~~~~~~~~~~~~~a~~~~~~~i~~~~-~~-~p~~~lg~~YV~eg 127 (205)
T PF01126_consen 71 -ELRR-SAALEADLAALGGPDWRDDIEPSPATQAYVPHIRELA-ES-SPALLLGHAYVLEG 127 (205)
T ss_dssp -HHHT-HHHHHHHHHHHHCTTHHHHCHHHHHHHHHHHHHHHHH-HH-SGGGHHHHHHHHHH
T ss_pred -chhH-HHHHHHHHHHhhCCCcccccCCChhHHHHHHHHHHHH-cc-CHHHHHHHHHHHHH
Confidence 0111 112222222333221 13567899999999998885 22 44456665555443
No 13
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=95.42 E-value=0.19 Score=42.06 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=72.1
Q ss_pred hHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHH-h
Q 026416 14 VIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM-A 92 (239)
Q Consensus 14 ~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~-~ 92 (239)
+...|+.-.+..-..+-+..|+..+-+|-++.+.|+..+.|-|....++-+.... ..+ . ..+.... -
T Consensus 3 la~~lR~gt~~ah~~aEnv~fmkcfLkg~V~~e~f~kl~~n~yf~ysaleaa~~~----~~d-----~---~~l~~i~fp 70 (238)
T COG5398 3 LAFKLRQGTQKAHTVAENVGFMKCFLKGVVERESFRKLLANLYFVYSALEAATQI----HKD-----N---PILSSIYFP 70 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHH----hcc-----C---chhhhccch
Confidence 4556666566555666667799999999999999999999999988877654332 222 0 1121111 1
Q ss_pred hHHHHHHHHHHHHHHcCCCC-CCCCCchHhHHHHHHHHHhcC
Q 026416 93 GLHDEIAWFKKEASKWGVEL-SETVPQKANQVYCRFLESLMS 133 (239)
Q Consensus 93 ~~~~E~~~~~~~~~~~gi~~-~~~~~~pa~~~Y~~~l~~~a~ 133 (239)
.+++--.+-+++...+|-+. +.+.++|++.+|+.+++.+++
T Consensus 71 ~lnr~~tle~dl~~yyg~nwre~I~~sp~t~~yv~rv~~iaa 112 (238)
T COG5398 71 ELNRKATLEKDLLYYYGNNWRENIQPSPATIAYVDRVRYIAA 112 (238)
T ss_pred hhhhHHHhhcCHHHHhcccHHHhcCcChhHHHHHHHHHHHHh
Confidence 22332334444555566333 468899999999999999963
No 14
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=95.27 E-value=0.89 Score=38.20 Aligned_cols=187 Identities=10% Similarity=0.169 Sum_probs=103.9
Q ss_pred HhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHhhHHHHH---------
Q 026416 28 GATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEI--------- 98 (239)
Q Consensus 28 ~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~E~--------- 98 (239)
.+.+.||++.|..-++ +....|+.|=.+|-++-...+-.++.++..... ......|. .++.+|.
T Consensus 20 s~nn~~~~~~i~t~S~--~~~~~vi~~ys~F~~~~~~~l~~A~~~~~~~~~--~~V~~El~---~Ni~EE~G~~~gk~sH 92 (231)
T PF12981_consen 20 SINNNPFLSHISTASF--SQKELVIKQYSVFPKYNCGMLQRAAYCIRGFCW--PGVAQELQ---RNINEEMGEGCGKISH 92 (231)
T ss_dssp -TTT-CCHHGCCC--H--HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---HHHHHHHH---HHHHHHTTTTTTT--H
T ss_pred hhcCCHHHHHhhhhhH--HHHHHHHHHHhHhhHHHHHHHHHHHHHHhhcCC--cHHHHHHH---HhHHHhcCCCCCCcch
Confidence 3567899988875544 444566666666888888888888888777544 12222232 3455554
Q ss_pred -HHHHHHHHH-cCCCCCCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHH-------HHHHHHHhhccCCCC-CCCc
Q 026416 99 -AWFKKEASK-WGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIE-------AVYQESFAHCLEPDT-NTPP 168 (239)
Q Consensus 99 -~~~~~~~~~-~gi~~~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~-------~~Y~~i~~~~~~~~~-~~~~ 168 (239)
.++++-+.. +|.+.....|+++|.....-++.+...+ + -..|.++++.| .+-.+|..++..+.. +...
T Consensus 93 y~~~~~~l~~~~~~~v~~~~Ps~aT~~fl~sv~~L~t~~-~-s~vlGa~YAtE~~AIpEl~ll~ei~~~la~rk~~~~~~ 170 (231)
T PF12981_consen 93 YVVFRKALHTYFGFDVNNRMPSVATTHFLDSVLALFTWD-S-SEVLGACYATEAAAIPELQLLYEIVNELAQRKGLHNSW 170 (231)
T ss_dssp HHHHHHHHHHHHS---TT----HHHHHHHHHHHHHCTS--H-HHHHHHHHHHHHHHHHHHHHHHHHHTTT---HHHHH--
T ss_pred HHHHHHHHHHHhCCcccccCCcHHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch
Confidence 477776655 8988888999999999999999985332 2 44555554443 233344433322110 0000
Q ss_pred hHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchh
Q 026416 169 ELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNM 234 (239)
Q Consensus 169 ~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~ 234 (239)
..-++.+.|-+..=....+.+.+.++..... + ++....++=|..++..=-.+|..
T Consensus 171 s~l~F~d~HlDg~E~~H~d~L~~~l~~~i~~--e---------~q~~~f~~Gf~~mI~~m~~wW~~ 225 (231)
T PF12981_consen 171 SQLDFYDWHLDGTEQEHKDGLRQFLASYIDT--E---------EQMPLFKDGFLAMIDIMEDWWKE 225 (231)
T ss_dssp ----HHHHHCS----HHHHHHHHHHHTT--G--G---------G-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcchHHHHHHHHHHHHHHHHcCc--c---------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 1115667676655567778888888876432 2 35777888999998888888875
No 15
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=92.34 E-value=0.42 Score=35.17 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCCCC----CCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHH
Q 026416 96 DEIAWFKKEASKWGVELS----ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESF 156 (239)
Q Consensus 96 ~E~~~~~~~~~~~gi~~~----~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~ 156 (239)
....+|+++++.+|++.+ .....|.+.++.+.++..+.+...+..++.++...|.+...+.
T Consensus 17 ~H~~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~ 81 (106)
T PF14518_consen 17 SHPELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCLHRSHYPEALGALLATESSVPQIY 81 (106)
T ss_dssp -HHHHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHH
Confidence 578999999999999975 2245688999999998875444566788888777666544444
No 16
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=40.35 E-value=43 Score=24.01 Aligned_cols=40 Identities=8% Similarity=0.187 Sum_probs=25.8
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026416 174 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 174 i~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 227 (239)
|..|+-.+|.++|..+.+.- ..++ ++...+...|.+.+.+
T Consensus 7 i~dyTE~EFl~~v~~i~~~~-----~~~e---------e~~d~lv~hF~~iteH 46 (85)
T PF01320_consen 7 ISDYTESEFLEFVKEIFNAE-----LKTE---------EEHDELVDHFEKITEH 46 (85)
T ss_dssp GGGSBHHHHHHHHHHHHHTC-----SSSC---------HHHHHHHHHHHHHH--
T ss_pred HHHhhHHHHHHHHHHHHcCC-----CCCH---------HHHHHHHHHHHHcCCC
Confidence 67788777777666654321 1234 6788899999888765
No 17
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=35.90 E-value=1.2e+02 Score=19.33 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026416 182 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 182 f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 227 (239)
|.+...++..+++++-... -.++.....|.+++.+
T Consensus 1 fEe~~~~Le~Iv~~Le~~~-----------~sLdes~~lyeeg~~l 35 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGE-----------LSLDESLKLYEEGMEL 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT------------S-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHH
Confidence 5677788888888875432 2477788888887764
No 18
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.35 E-value=1.6e+02 Score=20.70 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026416 180 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 180 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 227 (239)
..|.+...+|..+++++-.... .++.....|.+++.+
T Consensus 7 ~sfEeal~~LEeIV~~LE~~~l-----------~Lees~~lyeeG~~L 43 (80)
T PRK14067 7 ADFEQQLARLQEIVDALEGGDL-----------PLEESVALYKEGLGL 43 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCCC-----------CHHHHHHHHHHHHHH
Confidence 4688999999999998854332 366777777777654
No 19
>PF15565 Imm16: Immunity protein 16
Probab=27.97 E-value=1e+02 Score=23.02 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHh
Q 026416 185 YCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 231 (239)
Q Consensus 185 ~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~F 231 (239)
-++.+.+.+++++...+. +....+..+|--.+.+|++|
T Consensus 14 e~e~Fe~~L~~l~~~~d~---------~~I~~L~~~F~D~~d~eVmf 51 (106)
T PF15565_consen 14 ECEEFEEALNELAKYPDN---------DVIDDLCLIFDDETDHEVMF 51 (106)
T ss_pred HHHHHHHHHHHHHhcCCH---------hHHHHHHHHhcCccchHHHH
Confidence 356777788888776666 67888888888877777776
No 20
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=27.82 E-value=75 Score=25.12 Aligned_cols=83 Identities=12% Similarity=0.205 Sum_probs=42.2
Q ss_pred HhHhhhhcCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 026416 33 PFILAIRDGTVNYSSFKK-----WLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASK 107 (239)
Q Consensus 33 pFv~~l~~GtL~~~~f~~-----YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~E~~~~~~~~~~ 107 (239)
|.+..|..++||.+.+.. |-.|+.-|+++.-..+-+++.++|= .++... ...|++..++
T Consensus 45 PL~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And~Yl~LsIGna~W-----------PIGVt~-----vGIHeRsare 108 (144)
T PF02840_consen 45 PLFKKLKKRTLPEDILDSLATIVYHLQQREYVKANDAYLKLSIGNAAW-----------PIGVTM-----VGIHERSARE 108 (144)
T ss_dssp HHHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHHHHHHHHTTB---------------SS------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCC-----------cceeee-----echhhhhHHH
Confidence 888889999999987653 4467888998888888899999883 333221 1233332221
Q ss_pred --cCCCCCCCCCchHhHHHHHHHHHh
Q 026416 108 --WGVELSETVPQKANQVYCRFLESL 131 (239)
Q Consensus 108 --~gi~~~~~~~~pa~~~Y~~~l~~~ 131 (239)
.+-+..++-...+++.|+.=+.++
T Consensus 109 ki~~~~vAhimnDE~tRk~iq~iKRL 134 (144)
T PF02840_consen 109 KIFSSNVAHIMNDETTRKYIQSIKRL 134 (144)
T ss_dssp --------B----HHHHHHHHHHHHH
T ss_pred HHhccchhHHhccHHHHHHHHHHHHH
Confidence 111112344556788888777665
No 21
>PF02909 TetR_C: Tetracyclin repressor, C-terminal all-alpha domain; InterPro: IPR004111 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the C-terminal domain found in the tetracycline transcriptional repressor TetR, which binds to the Tet(A) gene to repress its expression in the absence of tetracycline []. Tet(A) is a membrane-associated efflux protein that exports tetracycline from the cell before it can attach to ribosomes and inhibit polypeptide chain growth. TetR occurs as a homodimer and uses two helix-turn-helix (HTH) motifs to bind tandem DNA operators, thereby blocking the expression of the associated genes, TetA and TetR. The structure of the class D TetR repressor protein [] involves 10 alpha-helices, with connecting turns and loops. The three N-terminal helices constitute the DNA-binding HTH domain, which has an inverse orientation compared with HTH motifs in other DNA-binding proteins. The core of the protein, formed by helices 5-10, is responsible for dimerisation and contains, for each monomer, a binding pocket that accommodates tetracycline in the presence of a divalent cation.; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 2Y30_B 3ZQL_C 2Y31_B 2Y2Z_A 2VPR_A 3B6A_A 3B6C_A 2OPT_A 2NS7_B 2NS8_C ....
Probab=26.10 E-value=1.4e+02 Score=22.21 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=29.4
Q ss_pred ccCchHHHHHHHcHHHHHHhhcCHhHhhhhcCC
Q 026416 10 GKGGVIDTWLRKHRLIYIGATRHPFILAIRDGT 42 (239)
Q Consensus 10 ~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~Gt 42 (239)
...+|-++|..-+...++.+..||-+..+.-.+
T Consensus 4 ~~~~W~~~l~~~a~~~r~~~~~hP~~~~~~~~~ 36 (139)
T PF02909_consen 4 PGDDWRERLRALARAYRAALLRHPWLAELLLAR 36 (139)
T ss_dssp TTSEHHHHHHHHHHHHHHHHHTSTTHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCcCHHHHHHhc
Confidence 344899999999999999999999999888777
No 22
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.03 E-value=2.2e+02 Score=19.90 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026416 180 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 180 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 227 (239)
..|.+...++..+++++-... -.++...+.|.+++.+
T Consensus 10 ~sfEea~~~LEeIv~~LE~~~-----------l~Lees~~lyeeg~~L 46 (80)
T PRK00977 10 LSFEEALAELEEIVTRLESGD-----------LPLEESLAAFERGVAL 46 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 468899999999999875432 2377778888887765
No 23
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.74 E-value=2.4e+02 Score=19.62 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026416 180 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 180 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 227 (239)
..|.+....+..+++++-..- -.++.....|.+++.+
T Consensus 6 ~sfEeal~~Le~IV~~LE~gd-----------l~Leesl~lyeeG~~L 42 (76)
T PRK14068 6 QSFEEMMQELEQIVQKLDNET-----------VSLEESLDLYQRGMKL 42 (76)
T ss_pred cCHHHHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHH
Confidence 368889999999999875432 2477788888887765
No 24
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.71 E-value=2.4e+02 Score=19.55 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026416 180 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 180 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 227 (239)
..|.+...++..+++++-..-. .++...+.|.+++.+
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~l-----------~Leesl~~ye~G~~L 42 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGSA-----------SLEDSLDMYQKGIEL 42 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCCC-----------CHHHHHHHHHHHHHH
Confidence 3688889999999998754322 367777788777664
No 25
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=23.05 E-value=2.5e+02 Score=18.96 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026416 181 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 181 ~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 227 (239)
.|.+...++..+++++-... -.++.....|.+++.+
T Consensus 2 sfEe~l~~Le~Iv~~LE~~~-----------l~Leesl~lyeeG~~L 37 (67)
T TIGR01280 2 SFEEALSELEQIVQKLESGD-----------LALEEALNLFERGMAL 37 (67)
T ss_pred CHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 37778888888888874332 2367777788777765
No 26
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=22.79 E-value=1.1e+02 Score=23.10 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=28.0
Q ss_pred ccccccCchHHHHHHHcHHHHHHhhcCHhHhhhh
Q 026416 6 KEEAGKGGVIDTWLRKHRLIYIGATRHPFILAIR 39 (239)
Q Consensus 6 ~~~~~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~ 39 (239)
+.+.+.+++.++=..+.......+.+||.|+.+.
T Consensus 72 s~~~g~pTl~E~~~~~~~~~~~~a~~~P~V~avL 105 (117)
T PF12362_consen 72 SNEPGEPTLAEQEAAAKEARRAAARAHPLVKAVL 105 (117)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 3456678888888888889999999999999764
No 27
>KOG2808 consensus U5 snRNP-associated RNA splicing factor [RNA processing and modification]
Probab=21.81 E-value=3.3e+02 Score=24.54 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=38.4
Q ss_pred HhHhhhhcCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhccC
Q 026416 33 PFILAIRDGTVNYSSFKK-----WLGQDYIFVREFVAFAASVLVKAWK 75 (239)
Q Consensus 33 pFv~~l~~GtL~~~~f~~-----YL~QD~~yl~~~~r~~a~~~~ka~~ 75 (239)
|-++.|...+||.+-+.. |+.|+.-|+.+--..+-++|..||=
T Consensus 229 pLf~~lr~~~Lp~DI~~sLa~Ic~~~~~reyl~AndaYlklAIGNAPW 276 (341)
T KOG2808|consen 229 PLFRLLRRKNLPADIRQSLADICYLCQKREYLKANDAYLKLAIGNAPW 276 (341)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHccCCCC
Confidence 888999999999987754 6999999999999999999999995
No 28
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.58 E-value=2.9e+02 Score=19.17 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026416 181 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 181 ~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 227 (239)
.|.+...++..+++++-... -.++.....|.+++.+
T Consensus 5 ~fEeal~~LE~IV~~LE~g~-----------l~Leesl~lyeeG~~L 40 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGE-----------LSLDDSLKAFEEGVKH 40 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 58888999999999875432 2467777888877664
No 29
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=20.93 E-value=1.4e+02 Score=24.92 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=8.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHhhHHHHHHHHHH
Q 026416 40 DGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKK 103 (239)
Q Consensus 40 ~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~E~~~~~~ 103 (239)
.-+|+.+....||.+..-|+..+..++..+.-.-+. ...++..-.++..+++++.--+.
T Consensus 3 ~~~l~~~~V~~yL~~~PdFf~~~~~ll~~l~~ph~~-----~~avSL~erQ~~~LR~~~~~L~~ 61 (225)
T PF04340_consen 3 TDALDAEDVAAYLRQHPDFFERHPELLAELRLPHPS-----GGAVSLVERQLERLRERNRQLEE 61 (225)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHhCcHHHHhCHHHHHHcCCCCCC-----CCcccHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999888654444 23343333344445544443333
Done!