BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026418
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 96/207 (46%), Gaps = 12/207 (5%)
Query: 26 FTSSIGAVYMDPNRSPDDVVDESCWSDLEFCKNTK--NW-YCYGXXXXXXXXXXXXXXRX 82
FTSS G V + ++ P V DESCWSD+EFC+ K W Y
Sbjct: 125 FTSSAGTVNIQEHQLP--VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENN 182
Query: 83 XXXXXXXXXXXXXXXXQSTVNASIIHILKYLNGSAKTYANSVQA-YVHVRDVALAHILVY 141
S++ S+I L + G+ Y+ Q +VH+ D+ AHI ++
Sbjct: 183 IDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLF 242
Query: 142 ETPSASGRYLCAESVLHRGEVVEILAKFFPEYPIPT--KCSDEKNPRKKPYKFSNQKLKD 199
E P A GRY+C+ ++ ++L + +PEY IPT K DE K FS++KL D
Sbjct: 243 ENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDE---NLKSVCFSSKKLTD 299
Query: 200 LGLEFT-PVKQCLYETVKSLQEKGHLP 225
LG EF ++ V + + KG LP
Sbjct: 300 LGFEFKYSLEDMFTGAVDTCRAKGLLP 326
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 95/238 (39%), Gaps = 17/238 (7%)
Query: 1 MVEPAVIGTKNXXXX-XXXXXXXXXXFTSSIGAVYMDPNRSPDDVVDESCWSDLEFCKNT 59
M++PA+ G N TSS AV ++ VVDE W+D+EF +
Sbjct: 102 MIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSA 161
Query: 60 K--NW-YCYGXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXQSTVNASIIHILKYLNGS 116
K W Y S V +SI + + G+
Sbjct: 162 KPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGN 221
Query: 117 ---------AKTYANSVQAYVHVRDVALAHILVYETPSASGRYLCAESVLHRGEVVEILA 167
+ + SV + HV DV AHI V E SASGRY+C + E+ + L+
Sbjct: 222 EFLINGMKGMQMLSGSV-SIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLS 280
Query: 168 KFFPEYPIPTKCSDEKNPRKKPYKFSNQKLKDLGLEFT-PVKQCLYETVKSLQEKGHL 224
K +P+Y +PT D P K S++KL G F +++ E+V+ + KG L
Sbjct: 281 KRYPQYKVPTDFGD--FPPKSKLIISSEKLVKEGFSFKYGIEEIYDESVEYFKAKGLL 336
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 6/203 (2%)
Query: 26 FTSSIGAVYMDPNRSPDDVVDESCWSDLEFCKNTK--NW-YCYGXXXXXXXXXXXXXXRX 82
+TSS AV N DV+DES WSD++ ++ K W Y
Sbjct: 122 YTSSGSAVSF--NGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNG 179
Query: 83 XXXXXXXXXXXXXXXXQSTVNASIIHILKYLNGSAKTYANSVQAYVHVRDVALAHILVYE 142
+ SI L + G + + VHV DVA AHI + E
Sbjct: 180 IDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLE 239
Query: 143 TPSASGRYLCAESVLHRGEVVEILAKFFPEYPIPTKCSDEKNPRKKPYKFSNQKLKDLGL 202
GRY C+ ++ E+ ++L+ +PEY I T ++ + + +KL D G
Sbjct: 240 NSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGF 299
Query: 203 EFT-PVKQCLYETVKSLQEKGHL 224
+F ++ + ++ +EKG+L
Sbjct: 300 DFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|3IDX|H Chain H, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C222
pdb|3IDY|H Chain H, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C2221
pdb|3IDY|B Chain B, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C2221
Length = 231
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 107 IHILKYLNGSAKTYANSVQAYVHVRDVALAHILVYETPSASGR----YLCAESVLHRGEV 162
+ ++KY +G K YA+SV+ + + L E S Y CA + +GE
Sbjct: 48 VALIKY-DGRNKYYADSVKGRFSISRDNSKNTLYLEMNSLRAEDTAVYYCARDIGLKGEH 106
Query: 163 VEILAKFFPEY 173
+IL + P+Y
Sbjct: 107 YDILTAYGPDY 117
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 124 VQAYVHVRDVALAHILVYE-----TPSASGRYLCAESVLHRG--------EVVEILAKFF 170
V+ YVHV D+A AHIL + P+ +Y SV + G EV+E+ A+
Sbjct: 269 VRDYVHVCDLASAHILALDYVEKLGPNDKSKYF---SVFNLGTSRGYSVREVIEV-ARKT 324
Query: 171 PEYPIPTK 178
+PIP +
Sbjct: 325 TGHPIPVR 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,739,113
Number of Sequences: 62578
Number of extensions: 204468
Number of successful extensions: 526
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 8
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)