BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026419
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 305 bits (782), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 137/238 (57%), Positives = 183/238 (76%), Gaps = 2/238 (0%)
Query: 1 MDGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLR 60
M I+H++V VNG+NMH+AE G+GP ILF+HGFPELWYSWRHQ+ LA GYRAVAPDLR
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLR 67
Query: 61 GFGDTDARP--EVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPD 118
G+GDT P + + ++ H++GD+V L++ +AP++EKVFVV HDWGAL+AW LCLFRPD
Sbjct: 68 GYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPD 127
Query: 119 RVKALVNLSVVFNPFGSNDNLIEALRAYYGDNYYMCRFQKPGEIEAEFAQIGTETVIKEF 178
+VKALVNLSV F+ N++E L+A YG+++Y+ RFQ PGEIEAEFA IG ++V+K+
Sbjct: 128 KVKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVLKKI 187
Query: 179 FTFWTRDRIFLPKGKGFGRPPNTPIALPSWLSEEDVKYFTTKFDKKGFTGAMNYYRNI 236
T+ + PKGKG P+ P+AL SWLSEE++ Y+ KF++ GFTGA+NYYR +
Sbjct: 188 LTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRAL 245
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 304 bits (778), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 136/238 (57%), Positives = 183/238 (76%), Gaps = 2/238 (0%)
Query: 1 MDGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLR 60
M I+H++V VNG+NMH+AE G+GP ILF+HGFPELWYSWRHQ+ LA GYRAVAPDLR
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLR 67
Query: 61 GFGDTDARP--EVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPD 118
G+GDT P + + ++ H++GD+V L++ +AP++EKVFVV HDWGAL+AW LCLFRPD
Sbjct: 68 GYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPD 127
Query: 119 RVKALVNLSVVFNPFGSNDNLIEALRAYYGDNYYMCRFQKPGEIEAEFAQIGTETVIKEF 178
+VKALVNLSV F+ N++E L+A +G+++Y+ RFQ PGEIEAEFA IG ++V+K+
Sbjct: 128 KVKALVNLSVHFSKRNPKMNVVEGLKAIFGEDHYISRFQVPGEIEAEFAPIGAKSVLKKI 187
Query: 179 FTFWTRDRIFLPKGKGFGRPPNTPIALPSWLSEEDVKYFTTKFDKKGFTGAMNYYRNI 236
T+ + PKGKG P+ P+AL SWLSEE++ Y+ KF++ GFTGA+NYYR +
Sbjct: 188 LTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRAL 245
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 133/228 (58%), Gaps = 9/228 (3%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTS 73
+ +H E G GP + HGFPE WYSWR+QI ALA GYR +A D++G+G++ A PE+
Sbjct: 248 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 307
Query: 74 YTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPF 133
Y + ++V +D + S + VF +GHDWG ++ W++ LF P+RV+A+ +L+ F P
Sbjct: 308 YCMEVLCKEMVTFLDKLGLS-QAVF-IGHDWGGMLVWYMALFYPERVRAVASLNTPFIPA 365
Query: 134 GSNDNLIEALRAYYGDNYYMCRFQKPGEIEAEFAQIGTETVIKEFFTFWTRDRIFLPK-- 191
N + +E+++A +Y + FQ+PG EAE Q + T K F + + K
Sbjct: 366 NPNMSPLESIKANPVFDYQL-YFQEPGVAEAELEQNLSRT-FKSLFRASDESVLSMHKVC 423
Query: 192 --GKGFGRPPNTPIALPSWLSEEDVKYFTTKFDKKGFTGAMNYYRNIN 237
G F P P +L ++EE+++++ +F K GF G +N+YRN+
Sbjct: 424 EAGGLFVNSPEEP-SLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNME 470
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 133/228 (58%), Gaps = 9/228 (3%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTS 73
+ +H E G GP + HGFPE WYSWR+QI ALA GYR +A D++G+G++ A PE+
Sbjct: 44 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 103
Query: 74 YTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPF 133
Y + ++V +D + S + VF +GHDWG ++ W++ LF P+RV+A+ +L+ F P
Sbjct: 104 YCMEVLCKEMVTFLDKLGLS-QAVF-IGHDWGGMLVWYMALFYPERVRAVASLNTPFIPA 161
Query: 134 GSNDNLIEALRAYYGDNYYMCRFQKPGEIEAEFAQIGTETVIKEFFTFWTRDRIFLPK-- 191
N + +E+++A +Y + FQ+PG EAE Q + T K F + + K
Sbjct: 162 NPNMSPLESIKANPVFDYQL-YFQEPGVAEAELEQNLSRT-FKSLFRASDESVLSMHKVC 219
Query: 192 --GKGFGRPPNTPIALPSWLSEEDVKYFTTKFDKKGFTGAMNYYRNIN 237
G F P P +L ++EE+++++ +F K GF G +N+YRN+
Sbjct: 220 EAGGLFVNSPEEP-SLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNME 266
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 133/228 (58%), Gaps = 9/228 (3%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTS 73
+ +H E G GP + HGFPE WYSWR+QI ALA GYR +A D++G+G++ A PE+
Sbjct: 29 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 88
Query: 74 YTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPF 133
Y + ++V +D + S + VF +GHDWG ++ W++ LF P+RV+A+ +L+ F P
Sbjct: 89 YCMEVLCKEMVTFLDKLGLS-QAVF-IGHDWGGMLVWYMALFYPERVRAVASLNTPFIPA 146
Query: 134 GSNDNLIEALRAYYGDNYYMCRFQKPGEIEAEFAQIGTETVIKEFFTFWTRDRIFLPK-- 191
N + +E+++A +Y + FQ+PG EAE Q + T K F + + K
Sbjct: 147 NPNMSPLESIKANPVFDYQL-YFQEPGVAEAELEQNLSRT-FKSLFRASDESVLSMHKVC 204
Query: 192 --GKGFGRPPNTPIALPSWLSEEDVKYFTTKFDKKGFTGAMNYYRNIN 237
G F P P +L ++EE+++++ +F K GF G +N+YRN+
Sbjct: 205 EAGGLFVNSPEEP-SLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNME 251
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 130/239 (54%), Gaps = 9/239 (3%)
Query: 2 DGIQHRIVKVN-GINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLR 60
+ + H V V GI +H E G GP + HGFPE W+SWR+QI ALA G+R +A D++
Sbjct: 233 NDVSHGYVTVKPGIRLHFVEMGSGPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMK 292
Query: 61 GFGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRV 120
G+GD+ + PE+ Y + ++V +D + + VF +GHDW +M W + LF P+RV
Sbjct: 293 GYGDSSSPPEIEEYAMELLCKEMVTFLDKLG-IPQAVF-IGHDWAGVMVWNMALFYPERV 350
Query: 121 KALVNLSVVFNPFGSNDNLIEALRAYYGDNYYMCRFQKPGEIEAEFAQIGTETVIKEFFT 180
+A+ +L+ F P + + ++ +R+ NY + FQ+PG EAE + + T F
Sbjct: 351 RAVASLNTPFMPPDPDVSPMKVIRSIPVFNYQL-YFQEPGVAEAELEKNMSRTFKSFFRA 409
Query: 181 FWTRDRIFLPKGKGFG----RPPNTPIALPSWLSEEDVKYFTTKFDKKGFTGAMNYYRN 235
I + K G P P L +EE+++++ +F K GF G +N+YRN
Sbjct: 410 SDETGFIAVHKATEIGGILVNTPEDP-NLSKITTEEEIEFYIQQFKKTGFRGPLNWYRN 467
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 128/275 (46%), Gaps = 46/275 (16%)
Query: 6 HRIVKVNGINMHIAEKG----QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
HRI+ G +H QGP+++ LHGFPE WYSWRHQI ALA GYR VA D RG
Sbjct: 11 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 70
Query: 62 FGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVK 121
+G + +Y ++GD+VG++D+ E+ FVVGHDWGA +AW PDR
Sbjct: 71 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGA--EQAFVVGHDWGAPVAWTFAWLHPDRCA 128
Query: 122 ALVNLSVVF----------NPFGSND------NLIEALRAYYGDNYYMCRFQKPGEIE-- 163
+V +SV F +PFG L R +Y D Y+ + EIE
Sbjct: 129 GVVGISVPFAGRGVIGLPGSPFGERRPSDYHLELAGPGRVWYQD-YFAVQDGIITEIEED 187
Query: 164 -------------AEFAQIGTETVIKEFFTFWTRDRI--------FLPKGKGFGRPPNTP 202
E T+ + + D I + +G P
Sbjct: 188 LRGWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYP 247
Query: 203 IALPSWLSEEDVKYFTTKFDKKGFTGAMNYYRNIN 237
+P+W +E D+ ++T +F++ GF G +++Y NI+
Sbjct: 248 ETMPAWFTEADLDFYTGEFERSGFGGPLSFYHNID 282
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 128/275 (46%), Gaps = 46/275 (16%)
Query: 6 HRIVKVNGINMHIAEKG----QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
HRI+ G +H QGP+++ LHGFPE WYSWRHQI ALA GYR VA D RG
Sbjct: 5 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 64
Query: 62 FGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVK 121
+G + +Y ++GD+VG++D+ E+ FVVGHDWGA +AW PDR
Sbjct: 65 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGA--EQAFVVGHDWGAPVAWTFAWLHPDRCA 122
Query: 122 ALVNLSVVF----------NPFGSND------NLIEALRAYYGDNYYMCRFQKPGEIE-- 163
+V +SV F +PFG L R +Y D Y+ + EIE
Sbjct: 123 GVVGISVPFAGRGVIGLPGSPFGERRPSDYHLELAGPGRVWYQD-YFAVQDGIITEIEED 181
Query: 164 -------------AEFAQIGTETVIKEFFTFWTRDRI--------FLPKGKGFGRPPNTP 202
E T+ + + D I + +G P
Sbjct: 182 LRGWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYP 241
Query: 203 IALPSWLSEEDVKYFTTKFDKKGFTGAMNYYRNIN 237
+P+W +E D+ ++T +F++ GF G +++Y NI+
Sbjct: 242 ETMPAWFTEADLDFYTGEFERSGFGGPLSFYHNID 276
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 7 RIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
R V+V G + ++G G +LFLHG P Y WR+ I + + GYRAVAPDL G GD+
Sbjct: 12 RTVEVEGATIAYVDEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDS- 70
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
A+P++ HV G ID + D+ V V+ HDWG+++ PDRV A+
Sbjct: 71 AKPDIEYRLQDHV-AYXDGFIDALG-LDDXVLVI-HDWGSVIGXRHARLNPDRVAAVAFX 127
Query: 127 SVVFNP 132
+ P
Sbjct: 128 EALVPP 133
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 11/134 (8%)
Query: 2 DGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
+ +H V++ + +H +G GP +L LHG+P W+ W I LA Y + PDLRG
Sbjct: 7 EDFKHYEVQLPDVKIHYVREGAGPTLLLLHGWPGFWWEWSKVIGPLAE-HYDVIVPDLRG 65
Query: 62 FGDTDARP---EVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPD 118
FGD++ +P +++ Y+ D L+D + EK +VVGHD+ A++ D
Sbjct: 66 FGDSE-KPDLNDLSKYSLDKAADDQAALLDALGI--EKAYVVGHDFAAIVLHKFIRKYSD 122
Query: 119 RVKALVNLSVVFNP 132
RV + +F+P
Sbjct: 123 RVIK----AAIFDP 132
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGDLV 84
PV+L +HG E +W+ LA+ GYR VAPDL G G + VTSY+ + +
Sbjct: 27 PVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQID 86
Query: 85 GLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALV 124
+I + D+ + +VGH GA++A + RP ++K L+
Sbjct: 87 RVIQELP--DQPLLLVGHSMGAMLATAIASVRPKKIKELI 124
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 10/148 (6%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
+ IV +++ + G G +L LHG+P+ W H+I L + + VA DLRG+GD
Sbjct: 6 EQTIVDTTEARINLVKAGHGAPLLLLHGYPQTHVMW-HKIAPLLANNFTVVATDLRGYGD 64
Query: 65 TD---ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVK 121
+ + P +Y+ + D V ++ + E+ +VVGHD GA +A L L P RVK
Sbjct: 65 SSRPASVPHHINYSKRVMAQDQVEVMSKLG--YEQFYVVGHDRGARVAHRLALDHPHRVK 122
Query: 122 --ALVNLSVVFNPFGSNDNLIEALRAYY 147
AL++++ + + D E AYY
Sbjct: 123 KLALLDIAPTHKMYRTTDQ--EFATAYY 148
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 9/151 (5%)
Query: 1 MDGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLR 60
+ G + + + + +A KG GP +L LHG+P+ +W H+I + Y V DLR
Sbjct: 8 LPGFDYLTLHTSAARLRVAVKGSGPPLLLLHGYPQTHLAW-HRIAPRLAEDYSVVLADLR 66
Query: 61 GFGDTDA-RPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDR 119
G+G++ A E Y+ + D + + + E+ V+GHD GA + + L L P
Sbjct: 67 GYGESRALDEEGADYSKAALARDQLETMGQL--GFERFAVIGHDRGARVGYRLALDHPQA 124
Query: 120 VKALVNLSVVFNPFGSN---DNLIEALRAYY 147
V A V+L+VV P N N + AL AY+
Sbjct: 125 VAAFVSLTVV--PILDNWAAVNKVFALNAYH 153
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 2 DGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
+G + R+V V + ++ G GP +L LHGFP+ + W ++ L + Y V DLRG
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWA-RVAPLLANEYTVVCADLRG 61
Query: 62 FGDTD---ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPD 118
+G + P+ +Y+ + D L+ T+ E+ +VGHD G + L PD
Sbjct: 62 YGGSSKPVGAPDHANYSFRAMASDQRELMRTLG--FERFHLVGHDRGGRTGHRMALDHPD 119
Query: 119 RVKALVNLSVV 129
V +L L ++
Sbjct: 120 SVLSLAVLDII 130
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 2 DGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
+G + +V+G+ +H + GQGP+++ +HGF + WY W HQ+ + + +APDL G
Sbjct: 8 NGFESAYREVDGVKLHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPG 66
Query: 62 FGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWG 105
G ++ P T Y+ V L L +P D +V HD G
Sbjct: 67 LGQSE--PPKTGYSGEQVAVYLHKLARQFSP-DRPFDLVAHDIG 107
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 2 DGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
+G + +V+G+ +H + GQGP+++ +HGF + WY W HQ+ + + +APDL G
Sbjct: 8 NGFESAYREVDGVKLHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPG 66
Query: 62 FGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWG 105
G ++ P T Y+ V L L +P D +V HD G
Sbjct: 67 LGQSE--PPKTGYSGEQVAVYLHKLARQFSP-DRPFDLVAHDIG 107
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 2 DGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
+G + +V+G+ +H + GQGP+++ +HGF + WY W HQ+ + + +APDL G
Sbjct: 8 NGFESAYREVDGVKLHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPG 66
Query: 62 FGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWG 105
G ++ P T Y+ V L L +P D +V HD G
Sbjct: 67 LGQSE--PPKTGYSGEQVAVYLHKLARQFSP-DRPFDLVAHDIG 107
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 4 IQHRIVKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
I+ R V G +M E G PV+LFLHG P + WR+ I L S +APDL G
Sbjct: 7 IEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLIG 65
Query: 62 FGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVK 121
FG + +P++ +Y F + L I+ + ++V DWG +A+ L RPD V+
Sbjct: 66 FGQS-GKPDI-AYRFFDHVRYLDAFIEQRGVTS--AYLVAQDWGTALAFHLAARRPDFVR 121
Query: 122 ALVNLSVVFNPFGS----NDNLIEALRAYYGDNYYMCRFQKPGEIEA 164
L + + P + + + EA RA + +F+ PGE EA
Sbjct: 122 GLAFMEFI-RPMPTWQDFHQDHAEAARAVFR------KFRTPGEGEA 161
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 4 IQHRIVKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
I+ R V G +M E G PV+LFLHG P + WR+ I L S +APDL G
Sbjct: 7 IEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLIG 65
Query: 62 FGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVK 121
FG + +P++ +Y F + L I+ + ++V DWG +A+ L RPD V+
Sbjct: 66 FGQS-GKPDI-AYRFFDHVRYLDAFIEQRGVT--SAYLVAQDWGTALAFHLAARRPDFVR 121
Query: 122 ALVNLSVV----------FNPFGSNDNLIEALRAYYGDNYYMCRFQKPGEIEA 164
L + + + EA RA + +F+ PGE EA
Sbjct: 122 GLAFMEFIRPMPTWQDFHHTEVAEEQDHAEAARAVFR------KFRTPGEGEA 168
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 4 IQHRIVKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
I+ R V G +M E G PV+LFLHG P + WR+ I L S +APDL G
Sbjct: 7 IEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLIG 65
Query: 62 FGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVK 121
FG + +P++ +Y F + L I+ + ++V DWG +A+ L RPD V+
Sbjct: 66 FGQS-GKPDI-AYRFFDHVRYLDAFIEQRGVT--SAYLVAQDWGTALAFHLAARRPDFVR 121
Query: 122 ALVNLSVV----------FNPFGSNDNLIEALRAYYGDNYYMCRFQKPGEIEA 164
L + + + EA RA + +F+ PGE EA
Sbjct: 122 GLAFMEFIRPMPTWQDFHHTEVAEEQDHAEAARAVFR------KFRTPGEGEA 168
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+P++ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 -KPDLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVVFNPFGSNDNLIEALRAYY 147
+ PF + D E R +
Sbjct: 130 EFI-RPFPTWDEWPEFARETF 149
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Query: 2 DGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
+G + R+V V + ++ G GP +L LHGFP+ + W ++ L + Y V DLRG
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWA-RVAPLLANEYTVVCADLRG 61
Query: 62 FGDTD---ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPD 118
+G + P+ +Y+ + D L+ T+ E+ +VGH G + L PD
Sbjct: 62 YGGSSKPVGAPDHANYSFRAMASDQRELMRTLG--FERFHLVGHARGGRTGHRMALDHPD 119
Query: 119 RVKALVNLSVV 129
V +L L ++
Sbjct: 120 SVLSLAVLDII 130
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+P++ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 -KPDLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVVFNPFGSNDNLIEALRAYY 147
+ PF + D E R +
Sbjct: 130 EFI-RPFPTWDEWPEFARETF 149
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 70
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+P++ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 71 -KPDLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 126
Query: 127 SVVFNPFGSNDNLIEALRAYY 147
+ PF + D E R +
Sbjct: 127 EFI-RPFPTWDEWPEFARETF 146
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+P++ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 -KPDLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVVFNPFGSNDNLIEALRAYY 147
+ PF + D E R +
Sbjct: 130 EFI-RPFPTWDEWPEFARETF 149
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+P++ + HV L I+ V E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 -KPDLDYFFDDHV-RYLDAFIEAVG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVVFNPFGSNDNLIEALRAYY 147
+ P + D E R +
Sbjct: 130 EFI-RPIPTWDEWPEFARETF 149
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+P++ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 -KPDLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVVFNPFGSNDNLIEALRAYY 147
+ P + D E R +
Sbjct: 130 EFI-RPIPTWDEWPEFARELF 149
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+P++ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 -KPDLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVV 129
+
Sbjct: 130 EFI 132
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+P++ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 -KPDLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVV 129
+
Sbjct: 130 EFI 132
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+P++ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 -KPDLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVV 129
+
Sbjct: 130 EFI 132
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+P++ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 -KPDLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVVFNPFGSNDNLIEALRAYY 147
+ P + D E R +
Sbjct: 130 EFI-RPIPTWDEWPEFARETF 149
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 70
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+P++ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 71 -KPDLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 126
Query: 127 SVV 129
+
Sbjct: 127 EFI 129
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 15 NMHIAEKGQGPVILFLHGFP--ELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVT 72
N H +GQ PVIL P + +WR I AL+ YR +APD+ GFG TD RPE
Sbjct: 18 NYHDVGEGQ-PVILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTD-RPENY 74
Query: 73 SYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNP 132
+Y+ + ++G++D A EK +VG+ +G +A L +RV +V + V
Sbjct: 75 NYSKDSWVDHIIGIMD--ALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAV--- 129
Query: 133 FGSNDNLIEALRAYYG 148
G+ ++ E L A +G
Sbjct: 130 -GTRFDVTEGLNAVWG 144
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
+ + +++ G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 65 TD----ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRV 120
+D + PE +Y D L + + D V VV HDWG+ + + +RV
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLD--ALWEALDLGDRVVLVV-HDWGSALGFDWARRHRERV 125
Query: 121 KALVNLSVVFNPFGSND------NLIEALRAYYGDNYYM 153
+ + + + P D +L +A R+ G+ +
Sbjct: 126 QGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVL 164
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
+ + +++ G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 9 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 67
Query: 65 TD----ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRV 120
+D + PE +Y D L + + D V VV HDWG+ + + +RV
Sbjct: 68 SDKLDPSGPERYAYAEHRDYLD--ALWEALDLGDRVVLVV-HDWGSALGFDWARRHRERV 124
Query: 121 KALVNLSVVFNPFGSND------NLIEALRAYYGDNYYM 153
+ + + + P D +L +A R+ G+ +
Sbjct: 125 QGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVL 163
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTS 73
IN + +EK ++FLHG Y WRH + + + R + PDL G G + + S
Sbjct: 33 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKS-GKSGNGS 90
Query: 74 YTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPF 133
Y L + + +K+ VGHDWGA +A+ DR+KA+V++ V +
Sbjct: 91 YRLLDHYKYLTAWFELLNLP-KKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVI 149
Query: 134 GSNDN 138
S D
Sbjct: 150 ESWDE 154
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
+ + +++ G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 65 TD----ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRV 120
+D + PE +Y D L + + D V VV HDWG+ + + +RV
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLD--ALWEALDLGDRVVLVV-HDWGSALGFDWARRHRERV 125
Query: 121 KALVNLSVVFNPFGSND------NLIEALRAYYGDNYYM 153
+ + + + P D +L +A R+ G+ +
Sbjct: 126 QGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVL 164
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
+ + +++ G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 65 TD----ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRV 120
+D + PE +Y D L + + D V VV HDWG+ + + +RV
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLD--ALWEALDLGDRVVLVV-HDWGSALGFDWARRHRERV 125
Query: 121 KALVNLSVVFNPFGSND------NLIEALRAYYGDNYYM 153
+ + + + P D +L +A R+ G+ +
Sbjct: 126 QGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVL 164
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTS 73
IN + +EK ++FLHG Y WRH + + + R + PDL G G + + S
Sbjct: 33 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKS-GKSGNGS 90
Query: 74 YTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPF 133
Y L + + +K+ VGHDWGA +A+ DR+KA+V++ V +
Sbjct: 91 YRLLDHYKYLTAWFELLNLP-KKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVI 149
Query: 134 GSNDN 138
S D
Sbjct: 150 ESWDE 154
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTS 73
IN + +EK ++FLHG Y WRH + + + R + PDL G G + + S
Sbjct: 34 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKS-GKSGNGS 91
Query: 74 YTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPF 133
Y L + + +K+ VGHDWGA +A+ DR+KA+V++ V +
Sbjct: 92 YRLLDHYKYLTAWFELLNLP-KKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVI 150
Query: 134 GSNDN 138
S D
Sbjct: 151 ESWDE 155
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTS 73
IN + +EK ++FLHG Y WRH + + + R + PDL G G + + S
Sbjct: 34 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKS-GKSGNGS 91
Query: 74 YTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPF 133
Y L + + +K+ VGHDWGA +A+ DR+KA+V++ V +
Sbjct: 92 YRLLDHYKYLTAWFELLNLP-KKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVI 150
Query: 134 GSNDN 138
S D
Sbjct: 151 ESWDE 155
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 15 NMHIAEKGQGPVILFLHGFP--ELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVT 72
N H +GQ PVIL P + +WR I AL+ YR +APD+ GFG TD RPE
Sbjct: 18 NYHDVGEGQ-PVILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTD-RPENY 74
Query: 73 SYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNP 132
+Y+ + ++G++D A EK +VG+ +G +A L +RV + V+
Sbjct: 75 NYSKDSWVDHIIGIMD--ALEIEKAHIVGNAFGGGLAIATALRYSERVDRM----VLMGA 128
Query: 133 FGSNDNLIEALRAYYG 148
G+ ++ E L A +G
Sbjct: 129 AGTRFDVTEGLNAVWG 144
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 12 NGINMHIAEKGQGPV---ILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAR 68
G+ MH ++G L LHG P + +R + + G R VAPDL GFG +D
Sbjct: 31 EGLRMHYVDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKP 90
Query: 69 PEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSV 128
+ YT L+ +D + E+V +V DWG ++ L + RP V L+ ++
Sbjct: 91 TDDAVYTFGFHRRSLLAFLDAL--QLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNT 148
Query: 129 VF 130
Sbjct: 149 AL 150
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 EVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVV 129
+ YT L+ LI+ + + +V DWG + L + P R K L+ ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150
Query: 130 F 130
Sbjct: 151 L 151
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
Q + +++ G M ++G+G I+F HG P Y WR+ + L LG R VA DL G G
Sbjct: 9 QPKYLEIAGKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGA 67
Query: 65 TD----ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRV 120
+D + P+ SY L L D + D V V+ HDWG+ + + DRV
Sbjct: 68 SDKLSPSGPDRYSYGEQRDF--LFALWDALDLGDHVVLVL-HDWGSALGFDWANQHRDRV 124
Query: 121 KALVNLSVVFNPF 133
+ + + + P
Sbjct: 125 QGIAFMEAIVTPM 137
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
Q + +++ G M ++G+G I+F HG P Y WR+ + L LG R VA DL G G
Sbjct: 11 QPKYLEIAGKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGA 69
Query: 65 TD----ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRV 120
+D + P+ SY L L D + D V V+ HDWG+ + + DRV
Sbjct: 70 SDKLSPSGPDRYSYGEQRDF--LFALWDALDLGDHVVLVL-HDWGSALGFDWANQHRDRV 126
Query: 121 KALVNLSVVFNPF 133
+ + + + P
Sbjct: 127 QGIAFMEAIVTPM 139
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 EVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVV 129
+ YT L+ LI+ + + +V DWG + L + P R K L+ ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150
Query: 130 F 130
Sbjct: 151 L 151
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 EVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSV 128
+ YT L+ LI+ + + +V DWG + L + P R K L+ ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 EVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVV 129
+ YT L+ LI+ + + +V DWG + L + P R K L+ ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150
Query: 130 F 130
Sbjct: 151 L 151
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 EVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVV 129
+ YT L+ LI+ + + +V DWG + L + P R K L+ ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150
Query: 130 F 130
Sbjct: 151 L 151
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 7 RIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
R V + I +++ EKG GP+ LF HG + L+ + +A D RG G +D
Sbjct: 51 RRVDIGRITLNVREKGSGPLXLFFHGITSNSAVFEPLXIRLSDR-FTTIAVDQRGHGLSD 109
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNL 126
+PE T Y D+ GLI T+A +VGH GA + PD V+++V
Sbjct: 110 -KPE-TGYEANDYADDIAGLIRTLARG--HAILVGHSLGARNSVTAAAKYPDLVRSVV-- 163
Query: 127 SVVFNPFGSNDNLIEALRA 145
++ F P+ + L +AL A
Sbjct: 164 AIDFTPYIETEAL-DALEA 181
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAR 68
V +G ++ + G G +LF HG+P W +Q+ L+S GYR +A D RGFG +D
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 69 PEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDW-GALMAWFLCLFRPDRVKALVNLS 127
Y F D+ LI+ + ++V +VG G +A ++ RV LV L
Sbjct: 64 WTGNDYDTF--ADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 128 VVFNPFGSN 136
V FG
Sbjct: 120 AVTPIFGQK 128
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAR 68
V +G ++ + G G +LF HG+P W +Q+ L+S GYR +A D RGFG +D
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 69 PEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDW-GALMAWFLCLFRPDRVKALVNLS 127
Y F D+ LI+ + ++V +VG G +A ++ RV LV L
Sbjct: 64 WTGNDYDTF--ADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 128 VVFNPFGSN 136
V FG
Sbjct: 120 AVTPLFGQK 128
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 EVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVV 129
+ YT L+ LI+ + + +V WG + L + P R K L+ ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNAC 150
Query: 130 F 130
Sbjct: 151 L 151
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEV 71
I+++ + G G ++ +HGFP +SW Q AL GYR + D RGFG + ++P
Sbjct: 12 TSIDLYYEDHGTGVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQS-SQP-T 69
Query: 72 TSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGA-LMAWFLCLFRPDRVKALVNLSVVF 130
T Y DL +++T+ D +VG G +A ++ + R+ A+ L+ +
Sbjct: 70 TGYDYDTFAADLNTVLETLDLQD--AVLVGFSMGTGEVARYVSSYGTARIAAVAFLASL- 126
Query: 131 NPF--GSNDN 138
PF ++DN
Sbjct: 127 EPFLLKTDDN 136
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIG 81
G GP +L LHGFP+ W H++ + ++ + DL G+G +D +T +
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 82 DLVGLIDTVAPSDEKVF-VVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPFGSNDNLI 140
LI+ + F + GHD GA +++ L L P R+ L L ++ + +
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDIL----PTYEYWQ 145
Query: 141 EALRAYYGDNYYMCRFQKPGEIEAEFAQIGTETVIKEFFTFWTR 184
RAY Y+ +P + + +K WTR
Sbjct: 146 RMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTR 189
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTS 73
I ++ ++G G ++ +HG+P +SW Q L + GYR + D RGFG +
Sbjct: 13 IELYYEDQGSGQPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGYD 72
Query: 74 YTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWG-ALMAWFLCLFRPDRVKALVNLSVVFNP 132
Y F DL +++T+ D V +VG G +A ++ + +RV L L+ + P
Sbjct: 73 YDTF--AADLHTVLETLDLRD--VVLVGFSMGTGELARYVARYGHERVAKLAFLASL-EP 127
Query: 133 F 133
F
Sbjct: 128 F 128
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIG 81
G GP +L LHGFP+ W H++ + ++ + DL G+G +D +T +
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 82 DLVGLIDTVAPSDEKVF-VVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPFGSNDNLI 140
LI+ + F + GHD GA +++ L L P R+ L L ++ + +
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDIL----PTYEYWQ 145
Query: 141 EALRAYYGDNYYMCRFQKPGEIEAEFAQIGTETVIKEFFTFWTR 184
RAY Y+ +P + + +K WTR
Sbjct: 146 RMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTR 189
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEV 71
I+++ + G G ++ +HGFP +SW Q AL GYR + D RGFG + ++P
Sbjct: 11 TSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQS-SQP-T 68
Query: 72 TSYTCFHVIGDLVGLIDTVAPSD 94
T Y DL +++T+ D
Sbjct: 69 TGYDYDTFAADLNTVLETLDLQD 91
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEV 71
I+++ + G G ++ +HGFP +SW Q AL GYR + D RGFG + ++P
Sbjct: 11 TSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQS-SQP-T 68
Query: 72 TSYTCFHVIGDLVGLIDTVAPSD 94
T Y DL +++T+ D
Sbjct: 69 TGYDYDTFAADLNTVLETLDLQD 91
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEV 71
I+++ + G G ++ +HGFP +SW Q AL GYR + D RGFG + ++P
Sbjct: 11 TSIDLYYEDHGAGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQS-SQP-T 68
Query: 72 TSYTCFHVIGDLVGLIDTVAPSD 94
T Y DL +++T+ D
Sbjct: 69 TGYDYDTFAADLNTVLETLDLQD 91
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWR-HQITALASLGYRAVAPDLRGFGDTDARPEVT 72
IN+ + G G ++F+ G +W HQ+ A + GYR + D RG G T+
Sbjct: 33 INLAYDDNGTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATE---NAE 89
Query: 73 SYTCFHVIGDLVGLIDT--VAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSV 128
+T ++ D LI+T +AP+ VVG GA +A L + P+ V + V ++
Sbjct: 90 GFTTQTMVADTAALIETLDIAPAR----VVGVSMGAFIAQELMVVAPELVSSAVLMAT 143
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIG 81
G GP +L LHGFP+ W H++ + ++ + DL G+G +D +T +
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 82 DLVGLIDTVAPSDEKVF-VVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPFGSNDNLI 140
LI+ + F + GH+ GA +++ L L P R+ L L ++ + +
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDIL----PTYEYWQ 145
Query: 141 EALRAYYGDNYYMCRFQKPGEIEAEFAQIGTETVIKEFFTFWTR 184
RAY Y+ +P + + +K WTR
Sbjct: 146 RMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTR 189
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 20 EKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHV 79
+K G IL HG +W I LA GYR +A D GF + ++P Y+ +
Sbjct: 42 KKANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKS-SKPAHYQYSFQQL 100
Query: 80 IGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPFGSND 137
+ L++ + + + V+GH G +A L P +V+ L V+ NP G D
Sbjct: 101 AANTHALLERLGVA--RASVIGHSXGGXLATRYALLYPRQVERL----VLVNPIGLED 152
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAR 68
V +G ++ + G G +LF HG+ W +Q+ L+S GYR +A D RGFG +D
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 69 PEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDW-GALMAWFLCLFRPDRVKALVNLS 127
Y F D+ LI+ + ++V +VG G +A ++ RV LV L
Sbjct: 64 WTGNDYDTF--ADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 128 VVFNPFGSN 136
V FG
Sbjct: 120 AVTPLFGQK 128
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAR 68
V +G ++ + G G +LF HG+ W +Q+ L+S GYR +A D RGFG +D
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 69 PEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDW-GALMAWFLCLFRPDRVKALVNLS 127
Y F D+ LI+ + ++V +VG G +A ++ RV LV L
Sbjct: 64 WTGNDYDTF--ADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 128 VVFNPFGSN 136
V FG
Sbjct: 120 AVTPLFGQK 128
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAR 68
V +G ++ + G G +LF HG+ W +Q+ L+S GYR +A D RGFG +D
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 69 PEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDW-GALMAWFLCLFRPDRVKALVNLS 127
Y F D+ LI+ + ++V +VG G +A ++ RV LV L
Sbjct: 64 WTGNDYDTF--ADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 128 VVFNPFGSN 136
V FG
Sbjct: 120 AVTPLFGQK 128
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 6/164 (3%)
Query: 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIG 81
G GP +L LHGFP+ W H++ + ++ + DL G+G +D +T +
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 82 DLVGLIDTVAPSDEKVF-VVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPFGSNDNLI 140
LI+ + F + GH GA +++ L L P R+ L L ++ + +
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDIL----PTYEYWQ 145
Query: 141 EALRAYYGDNYYMCRFQKPGEIEAEFAQIGTETVIKEFFTFWTR 184
RAY Y+ +P + + +K WTR
Sbjct: 146 RMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTR 189
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTS 73
I ++ + G G ++ +HG+P SW +Q+ AL GYR + D RGFG + E
Sbjct: 17 IEIYYEDHGTGKPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYE 76
Query: 74 YTCF 77
Y F
Sbjct: 77 YDTF 80
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG------DTDARPEVTSYT 75
G P ++FLHG + ++W T + LG A+A DL G G D + P++ S T
Sbjct: 79 GSAPRVIFLHGGGQNAHTWD---TVIVGLGEPALAVDLPGHGHSAWREDGNYSPQLNSET 135
Query: 76 CFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNPFGS 135
V+ +L AP E FVVG G L A L PD V LV + V +
Sbjct: 136 LAPVLREL-------APGAE--FVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQR 186
Query: 136 NDNLIEALR 144
+ L R
Sbjct: 187 HAELTAEQR 195
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG 63
+G+ + + GQG ++F+HG+P +W+ Q+ A+ GYR +A D RG G
Sbjct: 7 DGVEIFYKDWGQGRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHG 58
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 7 RIVKVNGINMHIAEKGQGPVILFLH---GFPELWYSWRHQITALASLGYRAVAPDLRGFG 63
R V G+ E G+G ++ +H E +WR+ I LA YR +A D+ GFG
Sbjct: 19 RFVNAGGVETRYLEAGKGQPVILIHGGGAGAESEGNWRNVIPILAR-HYRVIAMDMLGFG 77
Query: 64 DTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKAL 123
T A+P++ YT I L I + D KV +VG+ G + + + V AL
Sbjct: 78 KT-AKPDI-EYTQDRRIRHLHDFIKAMN-FDGKVSIVGNSMGGATGLGVSVLHSELVNAL 134
Query: 124 V 124
V
Sbjct: 135 V 135
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG 63
+G ++ + G G I+F HG+P SW Q+ LA+ GYR +A D RG G
Sbjct: 7 DGTQIYYKDWGSGQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHG 58
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 18 IAEKGQGPVILFLHGF---PELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSY 74
+A Q P ++ LHG +WR I LA + VAPDL GFG ++ PE
Sbjct: 23 VAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAE-NFFVVAPDLIGFGQSE-YPETYPG 80
Query: 75 TCFHVIG----DLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVF 130
+G ++GL++ EK +VG+ G + L + P+R + + V
Sbjct: 81 HIMSWVGMRVEQILGLMNHFG--IEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVG 138
Query: 131 NPFGSNDNLIEALRAYYGD 149
P + + L A+Y D
Sbjct: 139 APMNARPPELARLLAFYAD 157
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 9 VKVNG-INMHIAEKGQGPVILFLHGFPELWYSWRHQITA----LASLGYRAVAPDLRGFG 63
+K+N ++M + P+ + +HGF +S I A L +G + D+ G G
Sbjct: 11 IKLNAYLDMPKNNPEKCPLCIIIHGFT--GHSEERHIVAVQETLNEIGVATLRADMYGHG 68
Query: 64 DTDARPEVTSYTCFHVIGDLVGLIDTVAPSD--EKVFVVGHDWGALMAWFLCLFRPDRVK 121
+D + E +T F + +++ ++D D +++ GH G L D +K
Sbjct: 69 KSDGKFE--DHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIK 126
Query: 122 ALVNLS 127
AL+ LS
Sbjct: 127 ALIPLS 132
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 7 RIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYRAVAPD 58
+ VK+N N+H E G G ++ LHG W ++ + GYR + D
Sbjct: 11 KFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKD 70
Query: 59 LRGFGDTDA--RPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFR 116
GF +DA E + L+ +D ++ +VG+ G A L
Sbjct: 71 SPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI-----DRAHLVGNSMGGATALNFALEY 125
Query: 117 PDRVKALV 124
PDR+ L+
Sbjct: 126 PDRIGKLI 133
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 7 RIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYRAVAPD 58
+ VK+N N+H E G G ++ LHG W ++ + GYR + D
Sbjct: 11 KFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKD 70
Query: 59 LRGFGDTDA--RPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFR 116
GF +DA E + L+ +D ++ +VG+ G A L
Sbjct: 71 SPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI-----DRAHLVGNSMGGATALNFALEY 125
Query: 117 PDRVKALV 124
PDR+ L+
Sbjct: 126 PDRIGKLI 133
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 7 RIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYRAVAPD 58
+ VK+N N+H E G G ++ LHG W ++ + GYR + D
Sbjct: 11 KFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKD 70
Query: 59 LRGFGDTDA--RPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFR 116
GF +DA E + L+ +D ++ +VG+ G A L
Sbjct: 71 SPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI-----DRAHLVGNAMGGATALNFALEY 125
Query: 117 PDRVKALV 124
PDR+ L+
Sbjct: 126 PDRIGKLI 133
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 7 RIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYRAVAPD 58
+ VK+N N+H E G G ++ LHG W ++ + GYR + D
Sbjct: 11 KFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKD 70
Query: 59 LRGFGDTDA--RPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFR 116
GF +DA E + L+ +D ++ +VG+ G A L
Sbjct: 71 SPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI-----DRAHLVGNAMGGATALNFALEY 125
Query: 117 PDRVKALV 124
PDR+ L+
Sbjct: 126 PDRIGKLI 133
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 7 RIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYRAVAPD 58
+ VK+N N+H E G G ++ LHG W ++ + GYR + D
Sbjct: 11 KFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKD 70
Query: 59 LRGFGDTDA--RPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFR 116
GF +DA E + L+ +D ++ +VG+ G A L
Sbjct: 71 SPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI-----DRAHLVGNAMGGATALNFALEY 125
Query: 117 PDRVKALV 124
PDR+ L+
Sbjct: 126 PDRIGKLI 133
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 7 RIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYRAVAPD 58
+ VK+N N+H E G G ++ LHG W ++ + GYR + D
Sbjct: 8 KFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKD 67
Query: 59 LRGFGDTDA--RPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFR 116
GF +DA E + L+ +D ++ +VG+ G A L
Sbjct: 68 SPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI-----DRAHLVGNAMGGATALNFALEY 122
Query: 117 PDRVKALV 124
PDR+ L+
Sbjct: 123 PDRIGKLI 130
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 28 LFLHGFPELWYS--WRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGDLVG 85
+ HGF + R +L +V D G GD+D + E + T + I D
Sbjct: 50 IIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFE--NMTVLNEIEDANA 107
Query: 86 LIDTVA--PSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLS 127
+++ V P +++VGH G ++A L PD +K +V L+
Sbjct: 108 ILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLA 151
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 28 LFLHGFPELWYS--WRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGDLVG 85
+ HGF + R +L +V D G GD+D + E + T + I D
Sbjct: 50 IIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFE--NMTVLNEIEDANA 107
Query: 86 LIDTVA--PSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLS 127
+++ V P +++VGH G ++A L PD +K +V L+
Sbjct: 108 ILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLA 151
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
Query: 8 IVKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
+ +G N+ + G G ++F HG+P W +Q+ S GYR +A D RG G +
Sbjct: 3 VTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRS 62
Query: 66 DARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDW-GALMAWFLCLFRPDRVKALV 124
D +P T + D+ L T A +GH G +A ++ P RV V
Sbjct: 63 D-QPS-TGHDMDTYAADVAAL--TEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAV 118
Query: 125 NLSVV 129
+S V
Sbjct: 119 LVSAV 123
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 23 QGPVILFLHGFPELWYSWRHQITALAS-LGYRAVAPDLRGFGDTDAR-PE-VTSYTCFHV 79
+GPV+L LHG SW A+ S + R VA DLR G+T + PE +++ T
Sbjct: 37 EGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMAKD 96
Query: 80 IGDLVGLIDTVAPSDEKVFVVGHDWGALMA 109
+G++V + P + ++GH G +A
Sbjct: 97 VGNVVEAMYGDLPP--PIMLIGHSMGGAIA 124
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 28 LFLHGFPELWYS--WRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGDLVG 85
+ HGF + R +L +V D G GD+D + E + T + I D
Sbjct: 50 IIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFE--NMTVLNEIEDANA 107
Query: 86 LIDTVA--PSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLS 127
+++ V P +++VGH G ++A L PD +K +V L+
Sbjct: 108 ILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLA 151
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 11 VNGINMHI----AEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
VNG +H G P I+ + W Q+ AL S +R + D RG G ++
Sbjct: 9 VNGTELHYRIDGERHGNAPWIVLSNSLGTDLSXWAPQVAAL-SKHFRVLRYDTRGHGHSE 67
Query: 67 ARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVK--ALV 124
A P+ YT + GD++GL DT+ + + G G L L DR++ AL
Sbjct: 68 A-PK-GPYTIEQLTGDVLGLXDTLKIA--RANFCGLSXGGLTGVALAARHADRIERVALC 123
Query: 125 NLSV 128
N +
Sbjct: 124 NTAA 127
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 23 QGPVILFLHGFPELWYSWRHQITALAS-LGYRAVAPDLRGFGDTDAR-PE-VTSYTCFHV 79
+GPV+L LHG SW A+ S + R VA DLR G+T + PE +++ T
Sbjct: 41 EGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMAKD 100
Query: 80 IGDLVGLIDTVAPSDEKVFVVGHDWGALMA 109
+G++V + P + ++GH G +A
Sbjct: 101 VGNVVEAMYGDLPP--PIMLIGHAMGGAIA 128
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 24 GPV-ILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGD 82
GPV +L +HGF +S R A A GY P L+G G E T FH D
Sbjct: 39 GPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHG---THYEDMERTTFH---D 92
Query: 83 LVGLIDT----VAPSDEKVFVVGHDWGALMAWFLCLFRPD 118
V ++ + + +FV G G + +L PD
Sbjct: 93 WVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPD 132
>pdb|3S8Y|A Chain A, Bromide Soaked Structure Of An Esterase From The
Oil-Degrading Bacterium Oleispira Antarctica
Length = 280
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 78 HVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNP 132
+V+ +L LI+++ P +K + GH G A + L P+R +++ S + NP
Sbjct: 124 YVVNELPELIESMFPVSDKRAIAGHSMGGHGALTIALRNPERYQSVSAFSPINNP 178
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 14 INMHIAEKGQG-PVILFLHGF---PELWYSWRHQITALASLGYRAVAPDLRGFGDTDARP 69
+ +H + GQG ++ LHG W ++ I L GYR + D G+G +D+
Sbjct: 25 LRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVV 84
Query: 70 EVTSYTCFH--VIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALV 124
S + + ++ +V +D K+ ++G+ G + L P+RV LV
Sbjct: 85 NSGSRSDLNARILKSVVDQLDIA-----KIHLLGNSMGGHSSVAFTLKWPERVGKLV 136
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGAPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALV- 124
+ P+ + +T + + + L + +EKVF++G +G +A + D +K L+
Sbjct: 70 E-EPDQSKFTIDYGVEEAEALRSKLF-GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSNDNLIEALRAYYGD 149
LS V + LI+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 15 NMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSY 74
N+ + G+ ++L HGF W+H + L YR V D G G T+ P+ +
Sbjct: 27 NVKVIGSGEATIVLG-HGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTN--PDYFDF 82
Query: 75 TCFHVIG----DLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVF 130
+ + DL+ +++ + E VGH A++ L RPD +V +S
Sbjct: 83 DRYSNLEGYSFDLIAILEDLKI--ESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISA-- 138
Query: 131 NPFGSND-------------NLIEALRAYY 147
+P ND L EA+R+ Y
Sbjct: 139 SPRYVNDVDYQGGFEQEDLNQLFEAIRSNY 168
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGDL 83
G +F+HG P S H+ Y+ + D RG G + + + T +H++ D+
Sbjct: 37 GKPAVFIHGGPGGGISPHHR-QLFDPERYKVLLFDQRGCGRSRPHASLDNNTTWHLVADI 95
Query: 84 VGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALV 124
L + E+ V G WG+ +A P+RV +V
Sbjct: 96 ERLREMAGV--EQWLVFGGSWGSTLALAYAQTHPERVSEMV 134
>pdb|3I6Y|A Chain A, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
pdb|3I6Y|B Chain B, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
Length = 280
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 78 HVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNP 132
+V+ +L LI++ P +K + GH G A + L P+R +++ S + NP
Sbjct: 124 YVVNELPELIESXFPVSDKRAIAGHSXGGHGALTIALRNPERYQSVSAFSPINNP 178
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 15 NMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSY 74
N+ + G+ ++L HGF W+H + L YR V D G G T+ P+ +
Sbjct: 9 NVKVIGSGEATIVLG-HGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTN--PDYFDF 64
Query: 75 TCFHVIG----DLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVF 130
+ + DL+ +++ + E VGH A++ L RPD +V +S
Sbjct: 65 DRYSNLEGYSFDLIAILEDLKI--ESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISA-- 120
Query: 131 NPFGSND-------------NLIEALRAYY 147
+P ND L EA+R+ Y
Sbjct: 121 SPRYVNDVDYQGGFEQEDLNQLFEAIRSNY 150
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALV- 124
+ P+ + +T + + + L + +EKVF++G +G +A + D +K L+
Sbjct: 70 E-EPDQSKFTIDYGVEEAEALRSKLF-GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSNDNLIEALRAYYGD 149
LS V + LI+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALV- 124
+ P+ + +T + + + L + +EKVF++G +G +A + D +K L+
Sbjct: 70 E-EPDQSKFTIDYGVEEAEALRSKLF-GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSNDNLIEALRAYYGD 149
LS V + LI+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG 63
PVI F HG+P W Q+ + GYR VA D RG G
Sbjct: 23 PVIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHG 61
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALV- 124
+ P+ + +T + + + L + +EKVF++G +G +A + D +K L+
Sbjct: 70 E-EPDQSKFTIDYGVEEAEALRSKLF-GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSNDNLIEALRAYYGD 149
LS V + LI+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALV- 124
+ P+ + +T + + + L + +EKVF++G +G +A + D +K L+
Sbjct: 70 E-EPDQSKFTIDYGVEEAEALRSKLF-GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSNDNLIEALRAYYGD 149
LS V + LI+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 15 NMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSY 74
N+ + G+ ++L HGF W+H + L YR V D G G T+ P+ +
Sbjct: 11 NVKVIGSGEATIVLG-HGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTN--PDYFDF 66
Query: 75 TCFHVIG----DLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVF 130
+ + DL+ +++ + E VGH A++ L RPD +V +S
Sbjct: 67 DRYSNLEGYSFDLIAILEDLKI--ESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISA-- 122
Query: 131 NPFGSND-------------NLIEALRAYY 147
+P ND L EA+R+ Y
Sbjct: 123 SPRYVNDVDYQGGFEQEDLNQLFEAIRSNY 152
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALV- 124
+ P+ + +T + + + L + +EKVF++G +G +A + D +K L+
Sbjct: 70 E-EPDQSKFTIDYGVEEAEALRSKLF-GNEKVFLMGSAYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSNDNLIEALRAYYGD 149
LS V + LI+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 27 ILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGDLVGL 86
+L HGF S R A GY P L G G T A E+ + T D+V
Sbjct: 54 VLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPA--EMAASTASDWTADIVAA 111
Query: 87 IDTVAPSDEKVFVVGHDW-GALMAWFLCLFRPDRVKALVNLSVVF 130
+ + + +F+ G GAL W F P+R ++ ++
Sbjct: 112 MRWLEERCDVLFMTGLSMGGALTVWAAGQF-PERFAGIMPINAAL 155
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 27 ILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGDLVGL 86
+L HGF S R A GY P L G G T A E+ + T D+V
Sbjct: 52 VLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPA--EMAASTASDWTADIVAA 109
Query: 87 IDTVAPSDEKVFVVGHDW-GALMAWFLCLFRPDRVKALVNLSVVF 130
+ + + +F+ G GAL W F P+R ++ ++
Sbjct: 110 MRWLEERCDVLFMTGLSMGGALTVWAAGQF-PERFAGIMPINAAL 153
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 27 ILFLHGFPELWYSWRHQITALA-SLGYRAVAPDLRGFGDTDARPEVTS--------YTCF 77
++ LHG P + +++ I ALA G + D G G++ P+ + F
Sbjct: 57 LIVLHGGPGMAHNYVANIAALADETGRTVIHYDQVGCGNSTHLPDAPADFWTPQLFVDEF 116
Query: 78 HVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNP 132
H + +G+ E+ V+G WG ++ + + +P LV+L++ +P
Sbjct: 117 HAVCTALGI--------ERYHVLGQSWGGMLGAEIAVRQP---SGLVSLAICNSP 160
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 101 GHDWGALMAWFLCLFRPDRVKALVN----------LSVVFNPFGSNDNLIEALRAYYGDN 150
G+D A A + RP+ + ALV+ L VV+N FG + N + + Y +
Sbjct: 176 GYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSS----YAPS 231
Query: 151 YYMCRFQKPGEIEAEFAQIGTETVIKEFFTFWTRDRIF 188
Y+ RF + ++A+ + W RD F
Sbjct: 232 YFTDRFSSAWGMGLDYAEPHMRRYVTGNARMWLRDYHF 269
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 36 LWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDE 95
+WY + L S G++ A DL G R + F + + + P DE
Sbjct: 25 IWYKLK---PLLESAGHKVTAVDLSAAGINPRR--LDEIHTFRDYSEPLMEVMASIPPDE 79
Query: 96 KVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVF 130
KV ++GH +G + P+++ V +S +
Sbjct: 80 KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 36 LWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDE 95
+WY + L S G++ A DL G R + F + + + P DE
Sbjct: 25 IWYKLK---PLLESAGHKVTAVDLSAAGINPRR--LDEIHTFRDYSEPLMEVMASIPPDE 79
Query: 96 KVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVF 130
KV ++GH +G + P+++ V +S +
Sbjct: 80 KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 36 LWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDE 95
+WY + L S G++ A DL G R + F + + + P DE
Sbjct: 19 IWYKLK---PLLESAGHKVTAVDLSAAGINPRR--LDEIHTFRDYSEPLMEVMASIPPDE 73
Query: 96 KVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVF 130
KV ++GH +G + P+++ V +S +
Sbjct: 74 KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 108
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 36 LWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDE 95
+WY + L S G++ A DL G R + F + + + P DE
Sbjct: 25 IWYKLK---PLLESAGHKVTAVDLSAAGINPRR--LDEIHTFRDYSEPLMEVMASIPPDE 79
Query: 96 KVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVF 130
KV ++GH +G + P+++ V +S +
Sbjct: 80 KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 44/121 (36%), Gaps = 34/121 (28%)
Query: 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGD 82
+G + +HG +SW L + G++ A DL G TD R I +
Sbjct: 3 EGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASG-TDLRK----------IEE 51
Query: 83 LVGLIDTVAP---------SDEKVFVVGHDWGAL--------------MAWFLCLFRPDR 119
L L D P +DEKV +VGH G A FL F PD
Sbjct: 52 LRTLYDYTLPLXELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDS 111
Query: 120 V 120
V
Sbjct: 112 V 112
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 44/121 (36%), Gaps = 34/121 (28%)
Query: 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHVIGD 82
+G + +HG +SW L + G++ A DL G TD R I +
Sbjct: 3 EGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASG-TDLRK----------IEE 51
Query: 83 LVGLIDTVAP---------SDEKVFVVGHDWGAL--------------MAWFLCLFRPDR 119
L L D P +DEKV +VGH G A FL F PD
Sbjct: 52 LRTLYDYTLPLXELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDS 111
Query: 120 V 120
V
Sbjct: 112 V 112
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 32/169 (18%)
Query: 21 KGQGPV-ILFLHGF---PELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTC 76
KGQG V ++ LHG+ E+W ++++ +L DL GFG + ++
Sbjct: 9 KGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLV----DLPGFGRSRGFGALS---- 60
Query: 77 FHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLSVVFNP-FGS 135
+ D+ + AP +K +G G L+A + L P+RV+ALV +V +P F +
Sbjct: 61 ---LADMAEAVLQQAP--DKAIWLGWALGGLVASQIALTHPERVQALV--TVASSPCFSA 113
Query: 136 ND-------NLIEALRAYYGDNYYMCRFQKPGEIEAEFAQIGTETVIKE 177
D +++ + D+ FQ+ E +GTET ++
Sbjct: 114 RDEWPGIKPDVLAGFQQQLSDD-----FQRTVERFLALQTMGTETARQD 157
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTS--YTCFHVIG 81
PV++ + G W Q+ L Y+ V D RG G+ P+ + Y+
Sbjct: 15 APVVVLISGLGGSGSYWLPQLAVLEQ-EYQVVCYDQRGTGNN---PDTLAEDYSIAQXAA 70
Query: 82 DLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLS 127
+L + VA E VVGH GAL+ L L P V L++++
Sbjct: 71 ELHQAL--VAAGIEHYAVVGHALGALVGXQLALDYPASVTVLISVN 114
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 101 GHDWGALMAWFLCLFRPDRVKALVN----------LSVVFNPFGSNDNLIEALRAYYGDN 150
G+D A A + RP+ + ALV+ L VV+N FG + N + + Y +
Sbjct: 176 GYDGAAFYAPYAPYGRPEDLXALVDAAHRLGLGVFLDVVYNHFGPSGNYLSS----YAPS 231
Query: 151 YYMCRFQKPGEIEAEFAQIGTETVIKEFFTFWTRDRIF 188
Y+ RF ++A+ + W RD F
Sbjct: 232 YFTDRFSSAWGXGLDYAEPHXRRYVTGNARXWLRDYHF 269
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG 63
VI F HG+P W Q+ + G+R VA D RG G
Sbjct: 28 VIHFHHGWPLSSDDWDAQLLFFVNKGFRVVAHDRRGHG 65
>pdb|1SR9|A Chain A, Crystal Structure Of Leua From Mycobacterium Tuberculosis
pdb|1SR9|B Chain B, Crystal Structure Of Leua From Mycobacterium Tuberculosis
Length = 644
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWY 38
VK+NG+ I+ G GP+ F+H ++ +
Sbjct: 518 VKINGVETEISGSGNGPLAAFVHALADVGF 547
>pdb|3FIG|A Chain A, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
pdb|3FIG|B Chain B, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
Length = 646
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWY 38
VK+NG+ I+ G GP+ F+H ++ +
Sbjct: 520 VKINGVETEISGSGNGPLAAFVHALADVGF 549
>pdb|3HPS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HPZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HQ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
pdb|3HQ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
Length = 644
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWY 38
VK+NG+ I+ G GP+ F+H ++ +
Sbjct: 518 VKINGVETEISGSGNGPLAAFVHALADVGF 547
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 17/111 (15%)
Query: 21 KGQGPV-ILFLHGF---PELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTC 76
KGQG V ++ LHG+ E+W ++++ +L DL GFG + ++
Sbjct: 9 KGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLV----DLPGFGRSRGFGALS---- 60
Query: 77 FHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLS 127
+ D + AP +K +G G L+A + L P+RV+ALV ++
Sbjct: 61 ---LADXAEAVLQQAP--DKAIWLGWSLGGLVASQIALTHPERVRALVTVA 106
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 27 ILFLHGFPELWYSWRH--QITALASLGYRAVAPDLRGFGDT 65
+L LHG +W++ + LA GYRAVA DL G G +
Sbjct: 35 VLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHS 75
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 21 KGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG-DTDARPEVTSYTCFHV 79
+G+G +L +HG + Q+ +R +APDL G G TDA SY+
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGY 80
Query: 80 IGDLVGLIDTVAPSDEKVF 98
+ ++ + +D VF
Sbjct: 81 ADAMTEVMQQLGIADAVVF 99
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 21 KGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG-DTDARPEVTSYTCFHV 79
+G+G +L +HG + Q+ +R +APDL G G TDA SY+
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGY 80
Query: 80 IGDLVGLIDTVAPSDEKVF 98
+ ++ + +D VF
Sbjct: 81 ADAMTEVMQQLGIADAVVF 99
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 21 KGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG-DTDARPEVTSYTCFHV 79
+G+G +L +HG + Q+ +R +APDL G G TDA SY+
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGY 80
Query: 80 IGDLVGLIDTVAPSDEKVF 98
+ ++ + +D VF
Sbjct: 81 ADAMTEVMQQLGIADAVVF 99
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + + HG P + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLXTXHGGPGXSHDYLLSLRDXTKEGITVLFYDQFGCGRS 69
Query: 66 DARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRPDRVKALV- 124
+ P+ + +T + + + L + +EKVF+ G +G +A + D +K L+
Sbjct: 70 E-EPDQSKFTIDYGVEEAEALRSKLF-GNEKVFLXGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSNDNLIEALRAYYGD 149
LS V + LI+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEXNRLIDELPAKYRD 154
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 58 DLRGFGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRP 117
D+R G + P V +Y DLV +D A +K +GH G L P
Sbjct: 49 DVRNHGLSPREP-VMNYPAM--AQDLVDTLD--AQQIDKATFIGHSMGGKAVMALTALAP 103
Query: 118 DRVKALVNLSV 128
DR+ LV + +
Sbjct: 104 DRIDKLVAIDI 114
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHV-IGDLV 84
+I HG E + L L A D G G ++ V S FHV + D++
Sbjct: 62 LIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSD--FHVFVRDVL 119
Query: 85 GLIDTVAPS--DEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLS--VVFNP 132
+D++ VF++GH G +A RP +V +S V+ NP
Sbjct: 120 QHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANP 171
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 17 HIAEKGQGPV-ILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARP-EVTSY 74
H+ KG G I+F GF W A +R + D G G +D R ++ Y
Sbjct: 12 HVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEE-DHRVILFDYVGSGHSDLRAYDLNRY 70
Query: 75 TCFHVIGDLVGLIDTVAPSDEKVFV-VGHDWGALMAWFLCLFRPDRVKALV 124
G ++D D K V VGH GAL+ + RP+ LV
Sbjct: 71 QTLD--GYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLV 119
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 58 DLRGFGDTDARPEVTSYTCFHVIGDLVGLIDTVAPSDEKVFVVGHDWGALMAWFLCLFRP 117
D+R G + P V +Y DLV +D + +K +GH G L P
Sbjct: 49 DVRNHGLSPREP-VMNYPAM--AQDLVDTLDAL--QIDKATFIGHSMGGKAVMALTALAP 103
Query: 118 DRVKALVNLSV 128
DR+ LV + +
Sbjct: 104 DRIDKLVAIDI 114
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHV-IGDLV 84
+I HG E + L L A D G G ++ V S FHV + D++
Sbjct: 44 LIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSD--FHVFVRDVL 101
Query: 85 GLIDTVAPS--DEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLS--VVFNP 132
+D++ VF++GH G +A RP +V +S V+ NP
Sbjct: 102 QHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANP 153
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDARPEVTSYTCFHV-IGDLV 84
+I HG E + L L A D G G ++ V S FHV + D++
Sbjct: 61 LIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSD--FHVFVRDVL 118
Query: 85 GLIDTVAPS--DEKVFVVGHDWGALMAWFLCLFRPDRVKALVNLS--VVFNP 132
+D++ VF++GH G +A RP +V +S V+ NP
Sbjct: 119 QHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANP 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,166,683
Number of Sequences: 62578
Number of extensions: 363459
Number of successful extensions: 1065
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 136
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)