BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026420
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G17|A Chain A, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|B Chain B, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|C Chain C, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|D Chain D, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|E Chain E, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|F Chain F, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|G Chain G, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|H Chain H, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
Length = 294
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 138 LFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI- 196
L LI+L+ G G +L I F+N+ CQ +V ++ K ++
Sbjct: 85 LAHEDTLIILAQNGYG----QLEHIPFKNV-------------CQAVVYISGQKKGDVVT 127
Query: 197 DFRHYSIRLQPVGVSRRLRKFVQSHQV 223
FR Y +R+Q ++R+ R VQ Q+
Sbjct: 128 HFRDYQLRIQDNALTRQFRDLVQDSQI 154
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 26.9 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 135 PQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTK 194
P ++ LIV +GFG+G + +TT++ K ST + + DT+
Sbjct: 1337 PVEVLLNDDLIVSTGFGSGLATVHVTTVVH------------KTSTSEEVCSFYLKIDTQ 1384
Query: 195 LIDFRHY 201
I+ HY
Sbjct: 1385 DIEASHY 1391
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 26.9 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 135 PQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTK 194
P ++ LIV +GFG+G + +TT++ K ST + + DT+
Sbjct: 1337 PVEVLLNDDLIVSTGFGSGLATVHVTTVVH------------KTSTSEEVCSFYLKIDTQ 1384
Query: 195 LIDFRHY 201
I+ HY
Sbjct: 1385 DIEASHY 1391
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 26.9 bits (58), Expect = 9.7, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 135 PQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTK 194
P ++ LIV +GFG+G + +TT++ K ST + + DT+
Sbjct: 1241 PVEVLLNDDLIVSTGFGSGLATVHVTTVVH------------KTSTSEEVCSFYLKIDTQ 1288
Query: 195 LIDFRHY 201
I+ HY
Sbjct: 1289 DIEASHY 1295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,830,482
Number of Sequences: 62578
Number of extensions: 201713
Number of successful extensions: 424
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 4
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)