Query 026420
Match_columns 238
No_of_seqs 118 out of 501
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2963 RNA-binding protein re 100.0 5.6E-67 1.2E-71 473.3 19.4 224 15-238 8-236 (405)
2 KOG2971 RNA-binding protein re 100.0 1.6E-36 3.5E-41 265.6 15.9 163 32-204 49-213 (299)
3 PF04427 Brix: Brix domain; I 100.0 3.2E-37 7E-42 261.3 8.2 169 37-218 1-172 (191)
4 KOG2781 U3 small nucleolar rib 100.0 1.1E-34 2.4E-39 253.2 15.3 158 30-207 80-238 (290)
5 smart00879 Brix Brix domain. T 100.0 2.8E-31 6E-36 221.7 18.1 159 36-205 1-162 (180)
6 COG5154 BRX1 RNA-binding prote 100.0 1.2E-31 2.5E-36 230.2 15.2 163 32-204 30-194 (283)
7 KOG2780 Ribosome biogenesis pr 100.0 3.9E-31 8.5E-36 233.3 15.5 160 32-210 96-256 (302)
8 PRK03972 ribosomal biogenesis 99.8 2.8E-19 6.1E-24 154.7 13.3 127 35-170 2-132 (208)
9 COG2136 IMP4 Predicted exosome 99.8 9.8E-18 2.1E-22 143.9 15.5 158 33-207 2-165 (191)
10 KOG3031 Protein required for b 99.5 1.3E-14 2.9E-19 129.5 7.2 184 17-211 12-206 (307)
11 COG5106 RPF2 Uncharacterized c 97.4 0.00018 3.9E-09 64.1 4.6 177 17-204 12-206 (316)
12 PRK00933 ribosomal biogenesis 97.0 0.0058 1.3E-07 51.7 9.0 82 36-125 2-84 (165)
13 PRK03972 ribosomal biogenesis 78.9 15 0.00032 32.4 8.5 80 30-117 103-188 (208)
14 PRK13605 endoribonuclease SymE 55.2 10 0.00023 30.2 2.4 45 30-80 61-105 (113)
15 TIGR02433 lysidine_TilS_C tRNA 42.0 31 0.00067 22.2 2.7 18 208-225 17-34 (47)
16 smart00676 DM10 Domains in hyp 33.5 44 0.00096 25.9 2.8 41 180-225 20-60 (104)
17 KOG3031 Protein required for b 30.1 1.4E+02 0.0031 27.6 5.8 72 44-133 153-242 (307)
18 TIGR02742 TrbC_Ftype type-F co 24.0 44 0.00095 27.1 1.3 48 144-208 27-74 (130)
19 PF12646 DUF3783: Domain of un 20.4 1E+02 0.0022 21.2 2.5 12 142-153 1-12 (58)
No 1
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-67 Score=473.28 Aligned_cols=224 Identities=55% Similarity=0.885 Sum_probs=212.3
Q ss_pred hhhhccCCCCCCCcCCCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEe
Q 026420 15 SFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSK 94 (238)
Q Consensus 15 ~k~k~~~~~~~~~~~~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~ 94 (238)
+.++++.....+.++...|.++|+++|-.+..+++|..|||++|+||||++|++++.|+||||+.+|+++|||||+||+.
T Consensus 8 K~~~aq~~~~~e~~i~~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lsk 87 (405)
T KOG2963|consen 8 KRTHAQFTPEQEIEIAKSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSK 87 (405)
T ss_pred hhhhhhcCccchhhcccCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEec
Confidence 33445555566778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEeCCCCCeEEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCc-hhhHHHHHHHHhcCCCCCC
Q 026420 95 TESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDI 173 (238)
Q Consensus 95 ~~~~~~L~I~rlP~GPTl~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~-~~lklv~~~fq~mFp~~~~ 173 (238)
++..++|+|+|+|.|||++|+|..|++.+||...+++|+++...|.++||||||||++.. +|++|+.+|||+|||+||+
T Consensus 88 t~~nlslki~R~PqGPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv 167 (405)
T KOG2963|consen 88 TETNLSLKIARTPQGPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINV 167 (405)
T ss_pred ccCceeEEEEecCCCCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCc
Confidence 999999999999999999999999999999999999999987779999999999999986 7999999999999999999
Q ss_pred CCcCCCCCCeEEEEEecCCCCeEEEEeeEEEeeecccchHHHHHHhhCC----CCCCCCCCChhhhhcC
Q 026420 174 NTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFVTK 238 (238)
Q Consensus 174 ~~~~l~~~~RVvlf~~~~~~d~I~fRHY~I~~~~~g~sk~vk~~~~~~~----~p~l~~~~di~~~~~~ 238 (238)
+++++.+|+||++++|+++|+.|.||||.|+++|+|+||+||+|+++++ +|||++++|||||+++
T Consensus 168 ~tvnlntikRcllinyn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~ 236 (405)
T KOG2963|consen 168 ATVNLNTIKRCLLINYNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLK 236 (405)
T ss_pred ceeeccceeEEEEEecCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcC
Confidence 9999999999999999999999999999999999999999999999874 5999999999999974
No 2
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-36 Score=265.56 Aligned_cols=163 Identities=20% Similarity=0.315 Sum_probs=152.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCC
Q 026420 32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGP 110 (238)
Q Consensus 32 ~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GP 110 (238)
..++||+++++++.+.+|||+|+..|| ||+..+.+..++.++..+.++|+..+|+.+++|++++.. +||||+..|+||
T Consensus 49 K~rvlv~ssRgis~R~RhLm~di~~Ll-ph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~Gp 127 (299)
T KOG2971|consen 49 KERVLVLSSRGISFRTRHLMKDISSLL-PHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGP 127 (299)
T ss_pred ceeEEEEecCCchHHHHHHHHHHHHhc-ccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCC
Confidence 347999999999999999999999998 999999988888899999999999999999999999875 899999999999
Q ss_pred eEEEEEeceEehhhhhhhcCCCCCCCCCC-CCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEe
Q 026420 111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLF-KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNY 189 (238)
Q Consensus 111 Tl~F~V~n~~l~~di~~~~~~~~~~g~~~-~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~ 189 (238)
|+.|.|+|+|||+|+..+ |||+ +++|+|-|+.-++..+|+++++++|++.|+.|+.|..+.+++|||++|+|
T Consensus 128 SvkFlv~n~hTM~Elkmt-------gN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi 200 (299)
T KOG2971|consen 128 SVKFLVHNVHTMAELKMT-------GNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSI 200 (299)
T ss_pred ceEEehhhhhhHHHhCCc-------cccccCCcceeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEE
Confidence 999999999999999886 8896 59999999876666889999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeeEEE
Q 026420 190 NKDTKLIDFRHYSIR 204 (238)
Q Consensus 190 ~~~~d~I~fRHY~I~ 204 (238)
. ||.||||.|||.
T Consensus 201 ~--D~~IWfRnyqI~ 213 (299)
T KOG2971|consen 201 L--DGKIWFRNYQIS 213 (299)
T ss_pred e--cCeEEEEEeEec
Confidence 5 589999999996
No 3
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=100.00 E-value=3.2e-37 Score=261.34 Aligned_cols=169 Identities=33% Similarity=0.558 Sum_probs=77.4
Q ss_pred EEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCCeEEEE
Q 026420 37 VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTFK 115 (238)
Q Consensus 37 Vi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GPTl~F~ 115 (238)
|++++++|+.+++|++||+.+| |.+|..++..+.|.++|++++|..+++|+|++|+++++. .+|||+++|+|||++|+
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~-~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~ 79 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLF-PPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFS 79 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS--TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHc-CCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEE
Confidence 6899999999999999999999 656899986666699999999999999999999999985 89999999999999999
Q ss_pred EeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCc-hhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEecCCCC
Q 026420 116 IHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTK 194 (238)
Q Consensus 116 V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~-~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~~~~~d 194 (238)
|+||++++|+.....++ .+++|+|||+||+++. ++++++++||++|||+++++.+++.++|||++|++++ |
T Consensus 80 I~~~~~~~~~~~~~~~~------~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~--d 151 (191)
T PF04427_consen 80 IENYKLMKDIKSSSKRP------KGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQR--D 151 (191)
T ss_dssp EEEEE-HHHHT-------------S---EEEEE-----------------------------------------------
T ss_pred EEeEEEhhHhcccccCC------CCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccccc--c
Confidence 99999999998764322 2568999999998874 7899999999999999999999999999999999964 5
Q ss_pred e-EEEEeeEEEeeecccchHHHHHH
Q 026420 195 L-IDFRHYSIRLQPVGVSRRLRKFV 218 (238)
Q Consensus 195 ~-I~fRHY~I~~~~~g~sk~vk~~~ 218 (238)
. |||||| |... .++.+|+++
T Consensus 152 ~~I~fR~Y-i~~~---~~~~~~~~~ 172 (191)
T PF04427_consen 152 FVIFFRHY-IFKS---GSKNPKKLL 172 (191)
T ss_dssp -------------------------
T ss_pred cccccccc-cccc---ccccccccc
Confidence 6 999999 8222 566666543
No 4
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=253.19 Aligned_cols=158 Identities=21% Similarity=0.387 Sum_probs=145.1
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCC
Q 026420 30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ 108 (238)
Q Consensus 30 ~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~ 108 (238)
+.+||+||++|+.+|+++.+|+++++.|+ || |.+++ |+++.+.+++++|...|+|++++++++++. .+|.|||+|.
T Consensus 80 ~~dPKimvTTSR~PSsrL~~FaKelkLvf-PN-aqr~n-RG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPf 156 (290)
T KOG2781|consen 80 EEDPKIMVTTSRDPSSRLKMFAKELKLVF-PN-AQRLN-RGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPF 156 (290)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHhheEec-cC-hhhhc-ccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCC
Confidence 45799999999999999999999999998 99 89998 999999999999999999999999999998 7999999999
Q ss_pred CCeEEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEE
Q 026420 109 GPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 188 (238)
Q Consensus 109 GPTl~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~ 188 (238)
|||+.|.+.|+.+.+||... |.+....|+||||||++..+ ++++++|..|||.+ ..+.+|||+|.
T Consensus 157 GPTa~Fsl~nvVmRhdip~~-------G~msE~~phlIfdNf~t~lG--~Rv~~iLkhLFP~p------k~ds~Rvvtf~ 221 (290)
T KOG2781|consen 157 GPTAFFSLHNVVMRHDIPDI-------GTMSEQKPHLIFDNFTTKLG--KRVKTILKHLFPVP------KDDSKRVVTFA 221 (290)
T ss_pred CCceEeeeeeeeeccccccc-------ccccccCceEEeccccchHH--HHHHHHHHHhCCCC------cCCcccEEEEe
Confidence 99999999999999999875 55556799999999999885 89999999999953 34889999999
Q ss_pred ecCCCCeEEEEeeEEEeee
Q 026420 189 YNKDTKLIDFRHYSIRLQP 207 (238)
Q Consensus 189 ~~~~~d~I~fRHY~I~~~~ 207 (238)
+. +|.|.||||.|....
T Consensus 222 N~--~DyIsFRhhvy~~~~ 238 (290)
T KOG2781|consen 222 NR--NDYISFRHHVYKKTD 238 (290)
T ss_pred cC--CceEEEEEEEEecCC
Confidence 85 489999999997544
No 5
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=99.98 E-value=2.8e-31 Score=221.73 Aligned_cols=159 Identities=30% Similarity=0.473 Sum_probs=134.7
Q ss_pred EEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCC-CCceEEEEEecC-CC-CceEEEeCCCCCeE
Q 026420 36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPM-GVTHFLMLSKTE-SA-PYLRVARTPQGPTL 112 (238)
Q Consensus 36 lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~-~~Thlivf~~~~-~~-~~L~I~rlP~GPTl 112 (238)
||++++++++.+++|++||+.++.|+++.. |+++.+.++.+.|... +++++++++.+. +. .+|||+++|+|||+
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~---r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l 77 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTKIN---RGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL 77 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEeec---ccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence 689999999999999999999995554332 5566777788777666 777777777763 44 79999999999999
Q ss_pred EEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEecCC
Q 026420 113 TFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKD 192 (238)
Q Consensus 113 ~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~~~~ 192 (238)
+|.+.+|++.+|+......+ ....++|+||||||+++.+ +++++||++|||.+++..++++.++||++|++++
T Consensus 78 ~f~i~~v~~~~~~~~~~~~~----~~~~~~P~li~~~~~~~~~--~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~- 150 (180)
T smart00879 78 DFKILNVSLRKELKGFKTGN----CLTGSRPLLIFNNFFTELG--KLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQD- 150 (180)
T ss_pred EEEEECcccHhhhhhhhcCC----CcCCCccEEEECCCCCchH--HHHHHHHHHHCCCCCccccccCCCCEEEEEEecC-
Confidence 99999999999998854321 2246899999999999875 8999999999999999999999999999999964
Q ss_pred CCeEEEEeeEEEe
Q 026420 193 TKLIDFRHYSIRL 205 (238)
Q Consensus 193 ~d~I~fRHY~I~~ 205 (238)
|.||||||+|..
T Consensus 151 -~~I~~R~y~i~~ 162 (180)
T smart00879 151 -DYIFFRHYRIKF 162 (180)
T ss_pred -CEEEEEEEEEEc
Confidence 799999999974
No 6
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.2e-31 Score=230.22 Aligned_cols=163 Identities=21% Similarity=0.304 Sum_probs=152.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCC
Q 026420 32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGP 110 (238)
Q Consensus 32 ~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GP 110 (238)
..+++|+.+++++.+.+|||+||-.+| ||+..+-|++-+..+.++.++|..++|+.++.|++++.. +|||+++.|+||
T Consensus 30 kq~~lilSsRGvsyr~RHL~~Dls~l~-phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGp 108 (283)
T COG5154 30 KQTSLILSSRGVSYRIRHLMKDLSRLV-PHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGP 108 (283)
T ss_pred cceEEEEecCCchHHHHHHHHHHHHhC-cccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCCC
Confidence 569999999999999999999999998 999888899988899999999999999999999999875 899999999999
Q ss_pred eEEEEEeceEehhhhhhhcCCCCCCCCCC-CCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEe
Q 026420 111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLF-KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNY 189 (238)
Q Consensus 111 Tl~F~V~n~~l~~di~~~~~~~~~~g~~~-~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~ 189 (238)
|+.|+++|.|||+|+..+ ||++ +++|.|-|+--+...||++.+++++++.|+-|.....+.+++|||++|++
T Consensus 109 tvkF~~~NlhTMdelNft-------gN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i 181 (283)
T COG5154 109 TVKFRMHNLHTMDELNFT-------GNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFI 181 (283)
T ss_pred eEEEEEeccchHhhcCCc-------cccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEE
Confidence 999999999999999875 7886 59999999886666789999999999999988888899999999999999
Q ss_pred cCCCCeEEEEeeEEE
Q 026420 190 NKDTKLIDFRHYSIR 204 (238)
Q Consensus 190 ~~~~d~I~fRHY~I~ 204 (238)
.||.||+|.|.|.
T Consensus 182 --~DgkIWvR~YeI~ 194 (283)
T COG5154 182 --LDGKIWVRCYEIG 194 (283)
T ss_pred --ecCeEEEEEEeec
Confidence 5699999999994
No 7
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=99.97 E-value=3.9e-31 Score=233.28 Aligned_cols=160 Identities=19% Similarity=0.337 Sum_probs=145.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCC
Q 026420 32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGP 110 (238)
Q Consensus 32 ~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GP 110 (238)
.||+||+++.........|+.+|+.++ ||+... .|++..++.++++|..+++||++++++.++. ..|.|+++|+||
T Consensus 96 spKvlITt~~~~~~~t~~~~~eL~~ii-PNs~~~--~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GP 172 (302)
T KOG2780|consen 96 SPKVLITTSKNPKRTTYKFASELLDII-PNSTVK--KRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGP 172 (302)
T ss_pred CccEEEEcCCCCcccHHHHHHHHHHhC-CCceEE--ecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCCC
Confidence 699999999999999999999999997 996554 4568899999999999999999999998876 799999999999
Q ss_pred eEEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEec
Q 026420 111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYN 190 (238)
Q Consensus 111 Tl~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~~ 190 (238)
|++|+++||++.+||... |+.+.+.|.||+|||+++++ ..|++||++|||.. +.-..+||++|++|
T Consensus 173 T~~Fkls~~~~~kdi~k~-------g~~t~h~PElIlNNFtTrlG--~~v~r~f~sLfp~~-----p~f~gRrvvtFhnQ 238 (302)
T KOG2780|consen 173 TAYFKLSNVVLTKDIKKH-------GRPTSHIPELILNNFTTRLG--MTVGRLFASLFPHD-----PQFTGRRVVTFHNQ 238 (302)
T ss_pred ceEEEeecccchhhhhhc-------CCcccccchhhhhcccchhh--HHHHHHHHHhCCCC-----ccccceeEEEEEec
Confidence 999999999999999886 66778999999999999996 69999999999973 22389999999997
Q ss_pred CCCCeEEEEeeEEEeeeccc
Q 026420 191 KDTKLIDFRHYSIRLQPVGV 210 (238)
Q Consensus 191 ~~~d~I~fRHY~I~~~~~g~ 210 (238)
+ |+|+||||+|.++.-|+
T Consensus 239 r--D~IfFRhhRY~Fkee~~ 256 (302)
T KOG2780|consen 239 R--DYIFFRHHRYEFKEEEI 256 (302)
T ss_pred C--ceEEEEEEEEeeccccc
Confidence 6 89999999999988663
No 8
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.81 E-value=2.8e-19 Score=154.70 Aligned_cols=127 Identities=15% Similarity=0.251 Sum_probs=105.7
Q ss_pred EEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCC---CC
Q 026420 35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ---GP 110 (238)
Q Consensus 35 ~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~---GP 110 (238)
++|++|+++|+++++|++||..++ || +..++ |++.+|+|+++.|...|+|++++++|+++. ..|.|+|||. ||
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v~-Pn-s~~i~-RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GP 78 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERVF-PN-SLYLT-RGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGY 78 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHhC-CC-CEEEe-cCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCc
Confidence 589999999999999999999998 99 45555 889999999999999999999999999998 7999999975 55
Q ss_pred eEEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhcCCC
Q 026420 111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPA 170 (238)
Q Consensus 111 Tl~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~ 170 (238)
|++|+|+|+.+.+||..- ..|....+.|++|.+||.+..++.+ .+..+.+.+.-
T Consensus 79 Ta~FkLsnV~l~~ei~~~-----~~~~~s~~~p~iItts~kt~~g~~~-~Ak~lA~eLgi 132 (208)
T PRK03972 79 LGYLYLHGIKLQREMGFR-----NLRPIREDMPLVITTAKRVGLDHMA-FAQVFAELTGG 132 (208)
T ss_pred eEEEEEccEEEHHHcccC-----CCCCccccccEEEEcCCCCCHHHHH-HHHHHHHHhCC
Confidence 999999999999999421 0144556899999999999886533 33344555543
No 9
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=99.77 E-value=9.8e-18 Score=143.88 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=134.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeC-CCCC
Q 026420 33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVART-PQGP 110 (238)
Q Consensus 33 Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rl-P~GP 110 (238)
|+.+||+|+++|.++++|++||..++ ||+. .++ |++.++.++.+.|...|.+++++++|.++. ..|.+.++ |.||
T Consensus 2 ~~~liTTSRkPS~Rtr~Fak~L~~~l-p~~~-~~~-rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~ 78 (191)
T COG2136 2 PKMLLTTSRKPSRRTRSFAKDLSRVL-PNAY-FLR-RGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGL 78 (191)
T ss_pred CcEEEEecCCccHHHHHHHHHHHHhC-Ccce-EEe-cCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCc
Confidence 89999999999999999999999998 9954 455 578899999999999999999999999998 68999999 9999
Q ss_pred eEEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhc----CCCCCCCCcCCCCCCeEEE
Q 026420 111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNI----FPAIDINTVKLSTCQRIVL 186 (238)
Q Consensus 111 Tl~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~m----Fp~~~~~~~~l~~~~RVvl 186 (238)
++.|.+.|+++.+|+...+.. ...+-|++|+|||.+..++ ..+.++|+.+ |++- .. -....|+.
T Consensus 79 ~~~f~l~~v~l~re~~~~~~~------~~~~~~~~I~~~~~~~~g~-~~~~~~~~~~~~~~f~~~----~~-~~~~~v~~ 146 (191)
T COG2136 79 TFSFKLSGVKLRREIPVLGPK------SRLHGPELIFNNFTTLLGF-LKVAEAFSELLLVKFVPN----PA-WEHELVAT 146 (191)
T ss_pred eEEEEEecceEEEeccccCCc------ccCCCCceeeecccccccc-hhhHHHHHhhcccccccC----cc-cceeeeee
Confidence 999999999999999876321 2347899999999998854 7889999999 6652 11 25678888
Q ss_pred EEecCCCCeEEEEeeEEEeee
Q 026420 187 LNYNKDTKLIDFRHYSIRLQP 207 (238)
Q Consensus 187 f~~~~~~d~I~fRHY~I~~~~ 207 (238)
++. .++++.||+|......
T Consensus 147 ~~~--~~~f~~~~~~~~~~~~ 165 (191)
T COG2136 147 GAN--KGDFKSLRRHRRVFEE 165 (191)
T ss_pred ccc--cceEEEEEeeeeEeee
Confidence 887 4589999998876654
No 10
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.3e-14 Score=129.48 Aligned_cols=184 Identities=16% Similarity=0.256 Sum_probs=149.2
Q ss_pred hhccCCCCCCCcCCCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHh-----hccCCCCceEEE
Q 026420 17 VKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLN-----VAGPMGVTHFLM 91 (238)
Q Consensus 17 ~k~~~~~~~~~~~~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~-----~a~~~~~Thliv 91 (238)
.+++....+++..+.+...+.+....++..+.+.|.|+..+-.|. +.++. ++|.+..|.+ ..+...-+.+++
T Consensus 12 ~kr~l~kr~~klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~-~i~~~--rkN~i~pFEd~ssleffseK~D~slfv 88 (307)
T KOG3031|consen 12 AKRALVKREPKLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPL-EIRYN--RKNNIHPFEDPSSLEFFSEKNDCSLFV 88 (307)
T ss_pred hHHHHHhhchhhchhhhhhhccCchhhchHHHHHHHHHHHhccCc-eeeec--cCCCcccCCCCchHHHHhhhhhhhhhh
Confidence 344455556677777777888888889999999999999999998 56665 5567888754 335566677777
Q ss_pred EEecCC-C-CceEEEeCCCCCe---EEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCC-CchhhHHHHHHHH
Q 026420 92 LSKTES-A-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT-GDQHLKLTTIMFQ 165 (238)
Q Consensus 92 f~~~~~-~-~~L~I~rlP~GPT---l~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~-~~~~lklv~~~fq 165 (238)
+.++.+ . .+|.|+|+.++-. +.+.|.||....|+..+. -..++.|+|+|+|+.= ..+.+++++++|.
T Consensus 89 ~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~k-------~~~gtKP~l~f~G~~f~~~~~~krlknL~v 161 (307)
T KOG3031|consen 89 LGSHSKKRPNNLVIGRTFDYEVLDMIELGIENYKSLSDFKAAK-------ITEGTKPMLIFQGAVFDQHPEYKRLKNLFV 161 (307)
T ss_pred hccccccCCCceEEEEecCchhhHHHHHhhhhhhhhhhhhccC-------CCCCCCceEEEecchhccChHHHHHHHHHH
Confidence 777765 4 7999999999998 899999999999998862 1236899999999532 2446899999999
Q ss_pred hcCCCCCCCCcCCCCCCeEEEEEecCCCCeEEEEeeEEEeeecccc
Q 026420 166 NIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS 211 (238)
Q Consensus 166 ~mFp~~~~~~~~l~~~~RVvlf~~~~~~d~I~fRHY~I~~~~~g~s 211 (238)
++|..+.++.+.+..+++|+.|+...+ ..|.||||.+..+.+|-.
T Consensus 162 DfFrge~vd~v~l~Gl~~v~vfta~~~-~~v~~r~Y~lklkKs~~~ 206 (307)
T KOG3031|consen 162 DFFRGEKVDKVRLAGLEYVIVFTATEE-TNVLFRVYRLKLKKSGTR 206 (307)
T ss_pred HHHcCCcccceeeccccEEEEEEeecC-ceeeeeeeeeeeeeccCC
Confidence 999999999999999999999999864 459999999999888765
No 11
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.00018 Score=64.10 Aligned_cols=177 Identities=14% Similarity=0.220 Sum_probs=129.9
Q ss_pred hhccCCCCCCCcCCCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhh------ccCCCCceEE
Q 026420 17 VKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNV------AGPMGVTHFL 90 (238)
Q Consensus 17 ~k~~~~~~~~~~~~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~------a~~~~~Thli 90 (238)
.|++...+++.-.+.....+.+..-..++.+-+.+-|+-.+-.|. ..++. ++|++..|... ...+.+.-.+
T Consensus 12 ~kRAl~kRepklve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~-~i~f~--rkn~ihpfEd~SplEffseknd~~l~v 88 (316)
T COG5106 12 VKRALHKREPKLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPK-EIGFI--RKNTIHPFEDTSPLEFFSEKNDKKLSV 88 (316)
T ss_pred HHHHHHhcCchhhhhhhheEeccCcccchhhhhhhcchhhhccch-hhccc--cCCcccccccCCHHHHHHHhhhhhhhh
Confidence 346677777777777666666666677888999999999998887 34443 55667666543 4567777777
Q ss_pred EEEecCCC-CceEEEeCCCCCe---EEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecC--CCCCchhhHHHHHHH
Q 026420 91 MLSKTESA-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG--FGTGDQHLKLTTIMF 164 (238)
Q Consensus 91 vf~~~~~~-~~L~I~rlP~GPT---l~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ng--F~~~~~~lklv~~~f 164 (238)
++++..+. .+|.++|..+--. +.|.|.+|.+..|+..+ |...+..|.++|.| |.+ -|..+.++++|
T Consensus 89 l~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~-------~~~~g~Kpmv~fQg~~fd~-hp~yr~iksLf 160 (316)
T COG5106 89 LFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECA-------GPELGMKPMVVFQGINFDA-HPTYRRIKSLF 160 (316)
T ss_pred hhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhcc-------CCccCCceEEEEecccccc-chHHHHHHHHH
Confidence 88888776 7899999876654 78899999999998775 44557899999988 443 45679999999
Q ss_pred HhcCCCCCCCCcCCCCCCeEEEEEecC--CCC----eEEEEeeEEE
Q 026420 165 QNIFPAIDINTVKLSTCQRIVLLNYNK--DTK----LIDFRHYSIR 204 (238)
Q Consensus 165 q~mFp~~~~~~~~l~~~~RVvlf~~~~--~~d----~I~fRHY~I~ 204 (238)
-+.|.....+.........|+.-+-+. .+. .+.||-|...
T Consensus 161 lDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVyk~k 206 (316)
T COG5106 161 LDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVYKTK 206 (316)
T ss_pred HHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeeeecc
Confidence 999987666555556777888877532 111 2678999854
No 12
>PRK00933 ribosomal biogenesis protein; Validated
Probab=96.96 E-value=0.0058 Score=51.66 Aligned_cols=82 Identities=13% Similarity=0.283 Sum_probs=65.1
Q ss_pred EEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCCeEEE
Q 026420 36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTF 114 (238)
Q Consensus 36 lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GPTl~F 114 (238)
+|+++++++..++++++++-..+ + + .+-.|++.+++++.+.|.. .++++++++++. ..|.|...-.-+.+.+
T Consensus 2 IITTSrkPs~~t~~fAkeLa~~l--n-~-~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~ 74 (165)
T PRK00933 2 IITTSRKPSQRTRSLVKDLARFL--N-C-KYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSY 74 (165)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh--C-C-EEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEE
Confidence 78999999999999999999997 4 3 3445899999999877654 399999999988 6899999877777766
Q ss_pred EEeceEehhhh
Q 026420 115 KIHEYSLAVDV 125 (238)
Q Consensus 115 ~V~n~~l~~di 125 (238)
.+. +.+..+.
T Consensus 75 ~~~-v~~~~~~ 84 (165)
T PRK00933 75 RLS-VKLQREI 84 (165)
T ss_pred EEE-eeeeccc
Confidence 553 4444333
No 13
>PRK03972 ribosomal biogenesis protein; Validated
Probab=78.88 E-value=15 Score=32.35 Aligned_cols=80 Identities=13% Similarity=0.194 Sum_probs=54.5
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCCCceEEEeC---
Q 026420 30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVART--- 106 (238)
Q Consensus 30 ~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~~~L~I~rl--- 106 (238)
+..| -+|+++.+++.......+.+-..+ ...+-+|++.++.++. ...+...++|++.+-.+..+.+-++
T Consensus 103 ~~~p-~iItts~kt~~g~~~~Ak~lA~eL----gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~~~~~~~~~~~~~ 174 (208)
T PRK03972 103 EDMP-LVITTAKRVGLDHMAFAQVFAELT----GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPRGMAVNFYRLDVT 174 (208)
T ss_pred cccc-EEEEcCCCCCHHHHHHHHHHHHHh----CCceeCcCCcCHHHHH---hhhcCceEEEEecCCCceEEEEEEeccc
Confidence 3445 378888888887888888887765 2233347777888665 3345678888887766655555553
Q ss_pred ---CCCCeEEEEEe
Q 026420 107 ---PQGPTLTFKIH 117 (238)
Q Consensus 107 ---P~GPTl~F~V~ 117 (238)
|-||.+..++-
T Consensus 175 ~~~~~~~~~~~~~~ 188 (208)
T PRK03972 175 KERPVGPLIFVKIW 188 (208)
T ss_pred cccccCCcEEEEEE
Confidence 88888877763
No 14
>PRK13605 endoribonuclease SymE; Provisional
Probab=55.19 E-value=10 Score=30.19 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=37.5
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhh
Q 026420 30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNV 80 (238)
Q Consensus 30 ~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~ 80 (238)
.-.+-+|||+.........+|++.||++- +|..||+..+.+|+++
T Consensus 61 ~V~~G~LVIt~~~~~~~~~el~~~l~~v~------~~s~~kq~q~~~fi~v 105 (113)
T PRK13605 61 RVMEGCIVLTAQPPAAEESELMQSLRQVC------KLSARKQKQVQEFIGV 105 (113)
T ss_pred EEeCCEEEEEeCCCCcccHHHHHHHHHHH------HhhhHHHHHHHHHHHH
Confidence 33568999999999999999999999984 5566788889999865
No 15
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=41.99 E-value=31 Score=22.18 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=14.3
Q ss_pred cccchHHHHHHhhCCCCC
Q 026420 208 VGVSRRLRKFVQSHQVPD 225 (238)
Q Consensus 208 ~g~sk~vk~~~~~~~~p~ 225 (238)
.+-++.||++++..++|-
T Consensus 17 ~~~~k~lkk~~~e~kiP~ 34 (47)
T TIGR02433 17 RKGSKKLKKLFIDAKVPP 34 (47)
T ss_pred CCCCchHHHHHHHcCCCH
Confidence 335899999999888773
No 16
>smart00676 DM10 Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases.
Probab=33.47 E-value=44 Score=25.89 Aligned_cols=41 Identities=17% Similarity=0.443 Sum_probs=31.3
Q ss_pred CCCeEEEEEecCCCCeEEEEeeEEEeeecccchHHHHHHhhCCCCC
Q 026420 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPD 225 (238)
Q Consensus 180 ~~~RVvlf~~~~~~d~I~fRHY~I~~~~~g~sk~vk~~~~~~~~p~ 225 (238)
..+++++..|. +||.|++ |......+|+.- ..+|++.++|+
T Consensus 20 ~~R~~~i~yyl-~D~Tvei--~E~~~~NsG~~~--g~fLkR~rvp~ 60 (104)
T smart00676 20 LIRRFKIYYYL-EDDTIEV--FEPDVRNSGILQ--GTFLRRQRVPK 60 (104)
T ss_pred cEEEEEEEEEC-CCCeEEE--EEcccCCCCCCC--ccEeeeeEcCC
Confidence 56777777776 5789998 445667889866 88898888887
No 17
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=30.09 E-value=1.4e+02 Score=27.63 Aligned_cols=72 Identities=26% Similarity=0.389 Sum_probs=49.6
Q ss_pred ChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeC---------C------
Q 026420 44 PGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVART---------P------ 107 (238)
Q Consensus 44 s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rl---------P------ 107 (238)
-++++.|+-|+-+- ++-... ..-|+.|.|+|+..+.. ++|++.++ |
T Consensus 153 ~krlknL~vDfFrg-e~vd~v-----------------~l~Gl~~v~vfta~~~~~v~~r~Y~lklkKs~~~~PRiELeE 214 (307)
T KOG3031|consen 153 YKRLKNLFVDFFRG-EKVDKV-----------------RLAGLEYVIVFTATEETNVLFRVYRLKLKKSGTRTPRIELEE 214 (307)
T ss_pred HHHHHHHHHHHHcC-Ccccce-----------------eeccccEEEEEEeecCceeeeeeeeeeeeeccCCCCceehhh
Confidence 35777888888773 332211 33678999999999876 77777665 4
Q ss_pred CCCeEEEEEeceEehhhhh--hhcCCCC
Q 026420 108 QGPTLTFKIHEYSLAVDVA--QSQLRPR 133 (238)
Q Consensus 108 ~GPTl~F~V~n~~l~~di~--~~~~~~~ 133 (238)
-||++-|.|-.-+++.|=- .+.+.|+
T Consensus 215 ~GPsldf~irR~~~asddL~k~A~k~PK 242 (307)
T KOG3031|consen 215 MGPSLDFEIRRTKLASDDLYKEALKKPK 242 (307)
T ss_pred cCCceeEEEEeccCCCHHHHHHHhcCch
Confidence 4999999999877776643 3444444
No 18
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=23.96 E-value=44 Score=27.14 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=28.5
Q ss_pred EEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEecCCCCeEEEEeeEEEeeec
Q 026420 144 LIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPV 208 (238)
Q Consensus 144 lLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~~~~~d~I~fRHY~I~~~~~ 208 (238)
-+||.||-+.. ++-...-++.+...-+. .-+.. |=.|||+|.|+.+|+
T Consensus 27 ~~VlRG~~~~~--~~~T~~~i~~L~~~~~~-----------~~v~I----dP~lF~~f~I~~VPa 74 (130)
T TIGR02742 27 PLVIRGLLDNG--FKATATRIQSLIKDGGK-----------SGVQI----DPQWFKQFDITAVPA 74 (130)
T ss_pred eEEEeCCCCCC--HHHHHHHHHHHHhcCCC-----------CcEEE----ChHHHhhcCceEcCE
Confidence 59999998754 34555556666543210 22233 237788888877663
No 19
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.40 E-value=1e+02 Score=21.16 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=9.7
Q ss_pred CcEEEecCCCCC
Q 026420 142 SPLIVLSGFGTG 153 (238)
Q Consensus 142 ~PlLi~ngF~~~ 153 (238)
.+.++|+||++.
T Consensus 1 e~~ll~~g~~~~ 12 (58)
T PF12646_consen 1 EEFLLFSGFSGE 12 (58)
T ss_pred CCEEEECCCCHH
Confidence 368999999874
Done!