Query 026420
Match_columns 238
No_of_seqs 118 out of 501
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxh_A Probable BRIX-domain ri 99.9 1.1E-25 3.7E-30 195.4 13.3 131 30-173 31-167 (217)
2 1w94_A MIL, probable BRIX-doma 99.4 2.6E-12 8.8E-17 106.1 10.9 85 34-127 1-86 (156)
3 2kkc_A Sequestosome-1; P62, PB 24.5 1.3E+02 0.0044 22.3 5.1 35 156-198 43-77 (102)
4 2ktr_A Sequestosome-1; autopha 19.7 1.8E+02 0.006 22.2 5.1 35 156-198 58-92 (117)
5 2z14_A EF-hand domain-containi 19.3 38 0.0013 26.4 1.2 41 180-225 35-75 (133)
6 1p3q_Q VPS9P, vacuolar protein 18.7 42 0.0014 22.3 1.2 16 159-174 14-29 (54)
7 1otr_A Protein CUE2; protein-p 17.7 46 0.0016 21.6 1.2 12 162-173 9-20 (49)
8 4a74_A DNA repair and recombin 14.1 2.1E+02 0.0071 22.2 4.6 33 86-118 191-226 (231)
9 1kdx_A CBP; complex (transcrip 12.6 98 0.0033 22.1 1.9 19 157-175 16-34 (81)
10 3hj7_A TRNA(Ile)-lysidine synt 11.6 1.2E+02 0.0043 23.5 2.4 41 184-224 41-86 (142)
No 1
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=99.93 E-value=1.1e-25 Score=195.37 Aligned_cols=131 Identities=13% Similarity=0.107 Sum_probs=117.7
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCC
Q 026420 30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ 108 (238)
Q Consensus 30 ~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~ 108 (238)
...||+||++|+++++++++|++||+.+| ||+ ..++ |++.+|+|+++.|..++||++++++++++. .+|||+|+|.
T Consensus 31 ~~~pKvLITTSr~pS~r~r~fakeL~~~l-Pns-~~i~-Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~ 107 (217)
T 2cxh_A 31 VGGYRILVTTSRRPSPRIRSFVKDLSATI-PGA-FRFT-RGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEG 107 (217)
T ss_dssp --CCEEEEEESSSCCHHHHHHHHHHHTTS-TTE-EECC-CTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHHHC-CCC-EEee-cCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCC
Confidence 35899999999999999999999999998 984 5555 888999999999999999999999999987 8999999999
Q ss_pred C---C-eEEEEEeceEehhhhhhhcCCCCCCCCC-CCCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCC
Q 026420 109 G---P-TLTFKIHEYSLAVDVAQSQLRPRCPQDL-FKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDI 173 (238)
Q Consensus 109 G---P-Tl~F~V~n~~l~~di~~~~~~~~~~g~~-~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~ 173 (238)
| | |++|+|+|+++++||... |++ ..++|+|+ +||.++ +++++++||++|||.+..
T Consensus 108 G~~~P~Ta~F~I~nv~l~~ei~~~-------g~~~~~~rP~L~-~nF~t~--~g~~i~~~f~~lFp~P~~ 167 (217)
T 2cxh_A 108 PERPDNIVSFIVKGVSLSRERRWG-------LPSLRGGEVLVA-RPLDSG--VAVEFADAFVIAFHARLK 167 (217)
T ss_dssp SSCCEEEEEEEEEEEECHHHHTCC-------CCCCCSCCEEEE-EESSSS--THHHHHHHHHHHHCCBSS
T ss_pred CCCCCcEEEEEEeeEEehhhhccC-------CCccCCCCceEE-eeecCc--hHHHHHHHHHHHcCCCCC
Confidence 9 9 999999999999999876 444 35899999 999886 478999999999998654
No 2
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=99.38 E-value=2.6e-12 Score=106.05 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=75.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCCeE
Q 026420 34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTL 112 (238)
Q Consensus 34 k~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GPTl 112 (238)
|.+|++|+++++++.++++++..++ + +..+. |++.+++++++.|... +++++++++. ..|.|+|+|.|||+
T Consensus 1 kilITTSr~Ps~~l~~fakeLa~~l--n-~~~v~-Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~ 72 (156)
T 1w94_A 1 HMLLTTSRKPSQRTRSFSQRLSRIM--G-WRYIN-RGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERG 72 (156)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHHH--T-CEECC-CTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh--C-CEEEe-eCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEE
Confidence 5799999999999999999999997 5 55554 8899999999888553 9999999988 79999999999999
Q ss_pred EEEEeceEehhhhhh
Q 026420 113 TFKIHEYSLAVDVAQ 127 (238)
Q Consensus 113 ~F~V~n~~l~~di~~ 127 (238)
+|++ |+.+.+|+..
T Consensus 73 ~f~~-nv~l~~~~~~ 86 (156)
T 1w94_A 73 YILF-NPSFEMKKPE 86 (156)
T ss_dssp EEEE-EEEECSSCCC
T ss_pred EEEE-ceEEcccCcc
Confidence 9998 9999999863
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=24.47 E-value=1.3e+02 Score=22.34 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEecCCCCeEEE
Q 026420 156 HLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDF 198 (238)
Q Consensus 156 ~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~~~~~d~I~f 198 (238)
-...+..+++.+||.+.. .-+.+...+.++|.|.|
T Consensus 43 s~~~L~~~V~~lFp~l~~--------~~f~l~Y~DedGDlIti 77 (102)
T 2kkc_A 43 PCERLLSRVAVLFPALRP--------GGFQAHYRAERGDLVAF 77 (102)
T ss_dssp HHHHHHHHHHHHCTTSCS--------SCEEEEEECTTCCEEEE
T ss_pred cHHHHHHHHHHHccccCC--------CcEEEEEECCCCCEEEe
Confidence 367889999999998642 22556666767888865
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=19.69 E-value=1.8e+02 Score=22.21 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=25.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEecCCCCeEEE
Q 026420 156 HLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDF 198 (238)
Q Consensus 156 ~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~~~~~d~I~f 198 (238)
-...+..+++.+||.+... -+.+...+.++|.|.|
T Consensus 58 s~~~L~~kV~~lFp~L~~~--------~f~l~YkDEdGDlItI 92 (117)
T 2ktr_A 58 PSERLLSRVAVLFPALRPG--------GFQAHYRAERGDLVAF 92 (117)
T ss_dssp HHHHHHHHHHHHCTTSCSS--------CEEEEEECTTCCEEEE
T ss_pred CHHHHHHHHHHHccccCCC--------cEEEEEECCCCCEEEe
Confidence 4678899999999976431 2556666767888876
No 5
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=19.31 E-value=38 Score=26.40 Aligned_cols=41 Identities=10% Similarity=0.200 Sum_probs=25.7
Q ss_pred CCCeEEEEEecCCCCeEEEEeeEEEeeecccchHHHHHHhhCCCCC
Q 026420 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPD 225 (238)
Q Consensus 180 ~~~RVvlf~~~~~~d~I~fRHY~I~~~~~g~sk~vk~~~~~~~~p~ 225 (238)
.+|++++..|. +||.|++. ......+|+.. ..+|++.++|.
T Consensus 35 ~~R~~~I~YyL-~DdTieI~--E~~~~NSG~~~--g~fLkR~rvpk 75 (133)
T 2z14_A 35 RIRYYKIYFYP-EDDTIQVN--EPEVKNSGLLQ--GTSIRRHRITL 75 (133)
T ss_dssp EEEEEEEEEET-TTTEEEEE--CCC-----CCC--SSEEEEECCBC
T ss_pred eEEEEEEEEEc-CCCcEEEE--ecCccCCCCcC--ceEEeeeeCCC
Confidence 45777777776 57899984 46667889855 44888877775
No 6
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=18.71 E-value=42 Score=22.30 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCCCCCC
Q 026420 159 LTTIMFQNIFPAIDIN 174 (238)
Q Consensus 159 lv~~~fq~mFp~~~~~ 174 (238)
-.-+.|++|||.++..
T Consensus 14 ~~~~~L~~MFP~lD~e 29 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMDPS 29 (54)
T ss_dssp HHHHHHHHHSTTSCHH
T ss_pred HHHHHHHHHcccCCHH
Confidence 3456799999987653
No 7
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=17.72 E-value=46 Score=21.55 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=9.5
Q ss_pred HHHHhcCCCCCC
Q 026420 162 IMFQNIFPAIDI 173 (238)
Q Consensus 162 ~~fq~mFp~~~~ 173 (238)
..|+.|||.++.
T Consensus 9 ~~L~EMFP~~~~ 20 (49)
T 1otr_A 9 SILMDMFPAISK 20 (49)
T ss_dssp HHHHHHCSSSCH
T ss_pred HHHHHHCCCCCH
Confidence 468999998755
No 8
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=14.07 E-value=2.1e+02 Score=22.17 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=19.3
Q ss_pred CceEEEEEecCCC-CceEEEeCCCCCe--EEEEEec
Q 026420 86 VTHFLMLSKTESA-PYLRVARTPQGPT--LTFKIHE 118 (238)
Q Consensus 86 ~Thlivf~~~~~~-~~L~I~rlP~GPT--l~F~V~n 118 (238)
++.++++...... -.|++.+.+.||+ +.|.|.+
T Consensus 191 ~d~~l~l~~~~~~~r~l~~~K~r~~~~~~~~f~i~~ 226 (231)
T 4a74_A 191 ATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITE 226 (231)
T ss_dssp CSEEEEEEECTTSCEEEEEESCC--CCSCEEEEEET
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCCCceEEEEEec
Confidence 5566666664433 4678888777776 4666553
No 9
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=12.58 E-value=98 Score=22.15 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.0
Q ss_pred hHHHHHHHHhcCCCCCCCC
Q 026420 157 LKLTTIMFQNIFPAIDINT 175 (238)
Q Consensus 157 lklv~~~fq~mFp~~~~~~ 175 (238)
-.+|..+.+.+||+|++..
T Consensus 16 ~hlv~Klv~aI~P~pdp~a 34 (81)
T 1kdx_A 16 SHLVHKLVQAIFPTPDPAA 34 (81)
T ss_dssp HHHHHHHHHHHSCCSSGGG
T ss_pred HHHHHHHHHHhcCCCChhh
Confidence 3699999999999998753
No 10
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=11.55 E-value=1.2e+02 Score=23.49 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=26.3
Q ss_pred EEEE-EecCCCCeEEEEeeEE--Eeeec--ccchHHHHHHhhCCCC
Q 026420 184 IVLL-NYNKDTKLIDFRHYSI--RLQPV--GVSRRLRKFVQSHQVP 224 (238)
Q Consensus 184 Vvlf-~~~~~~d~I~fRHY~I--~~~~~--g~sk~vk~~~~~~~~p 224 (238)
+..| .++..+.-+.+|..+= ...+. +-+|.||++++..++|
T Consensus 41 ~~~~~D~dki~~pL~vR~r~~GDr~~p~g~~g~KkLKklf~d~kIP 86 (142)
T 3hj7_A 41 DWFVVDPASVSLPLRVRTRRRGDRMVLKGTGGTKKLKEIFIEAKIP 86 (142)
T ss_dssp TEEEECGGGSCSSEEEECCCTTCEEEBSTTCCEEEHHHHHHHTTCC
T ss_pred EEEEECHHHCCCCEEEEecCCCCEEEECCCCCCccHHHHHHHcCCC
Confidence 4455 6665545567776642 23444 3479999999987766
Done!