Query 026421
Match_columns 238
No_of_seqs 427 out of 3128
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:47:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 3.7E-23 8E-28 160.1 15.5 86 67-152 31-116 (144)
2 KOG0107 Alternative splicing f 99.9 3E-21 6.5E-26 148.9 16.6 80 68-152 8-87 (195)
3 TIGR01622 SF-CC1 splicing fact 99.8 7.1E-20 1.5E-24 166.9 14.5 83 67-150 86-168 (457)
4 TIGR01659 sex-lethal sex-letha 99.8 2E-19 4.4E-24 157.7 14.8 85 69-153 192-278 (346)
5 KOG0121 Nuclear cap-binding pr 99.8 5.3E-20 1.1E-24 135.2 8.9 98 66-176 32-129 (153)
6 KOG4207 Predicted splicing fac 99.8 2.8E-19 6.1E-24 141.5 11.9 88 64-151 7-94 (256)
7 KOG0113 U1 small nuclear ribon 99.8 7.9E-18 1.7E-22 139.8 16.6 103 66-168 97-199 (335)
8 TIGR01659 sex-lethal sex-letha 99.8 9.2E-19 2E-23 153.6 11.8 86 65-150 102-187 (346)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.1E-18 4.5E-23 152.0 12.7 85 68-152 267-351 (352)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.8E-18 6.1E-23 151.2 11.3 84 69-152 2-85 (352)
11 TIGR01622 SF-CC1 splicing fact 99.8 1.2E-17 2.5E-22 152.3 15.1 81 70-150 186-266 (457)
12 KOG0122 Translation initiation 99.8 2.9E-18 6.4E-23 138.8 9.7 82 69-150 188-269 (270)
13 PF00076 RRM_1: RNA recognitio 99.8 6.8E-18 1.5E-22 114.0 9.7 70 73-143 1-70 (70)
14 KOG0130 RNA-binding protein RB 99.7 9.5E-18 2.1E-22 124.4 6.2 83 68-150 70-152 (170)
15 TIGR01648 hnRNP-R-Q heterogene 99.7 3.2E-16 6.8E-21 144.7 15.8 77 68-152 231-309 (578)
16 PF14259 RRM_6: RNA recognitio 99.7 2E-16 4.4E-21 107.2 9.6 70 73-143 1-70 (70)
17 KOG0105 Alternative splicing f 99.7 1.4E-16 2.9E-21 124.3 9.6 81 68-151 4-84 (241)
18 KOG0149 Predicted RNA-binding 99.7 5.3E-17 1.2E-21 131.0 7.3 80 69-149 11-90 (247)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.7 5.4E-16 1.2E-20 143.1 12.8 82 70-151 295-376 (509)
20 PLN03120 nucleic acid binding 99.7 4.6E-16 1E-20 129.3 10.5 77 70-150 4-80 (260)
21 TIGR01645 half-pint poly-U bin 99.7 7.9E-16 1.7E-20 142.5 13.0 85 68-152 202-286 (612)
22 TIGR01645 half-pint poly-U bin 99.6 6.3E-16 1.4E-20 143.1 10.4 84 65-148 102-185 (612)
23 PLN03213 repressor of silencin 99.6 1E-15 2.2E-20 134.9 9.9 80 66-149 6-87 (759)
24 KOG0132 RNA polymerase II C-te 99.6 3.7E-15 8.1E-20 137.1 13.7 79 70-154 421-499 (894)
25 smart00362 RRM_2 RNA recogniti 99.6 2.3E-15 5E-20 100.9 9.4 72 72-145 1-72 (72)
26 TIGR01628 PABP-1234 polyadenyl 99.6 1.5E-15 3.3E-20 141.9 11.0 80 71-150 1-80 (562)
27 KOG0111 Cyclophilin-type pepti 99.6 2.5E-16 5.5E-21 125.9 4.6 85 67-151 7-91 (298)
28 KOG0125 Ataxin 2-binding prote 99.6 1.4E-15 3E-20 127.9 9.1 85 64-150 90-174 (376)
29 TIGR01648 hnRNP-R-Q heterogene 99.6 1.9E-15 4E-20 139.7 10.3 79 68-147 56-135 (578)
30 PLN03121 nucleic acid binding 99.6 3.1E-15 6.7E-20 122.5 10.4 77 69-149 4-80 (243)
31 KOG0131 Splicing factor 3b, su 99.6 9.4E-16 2E-20 119.3 6.7 84 66-149 5-88 (203)
32 KOG0126 Predicted RNA-binding 99.6 7.3E-17 1.6E-21 125.5 0.5 81 68-148 33-113 (219)
33 KOG0148 Apoptosis-promoting RN 99.6 2.8E-15 6.1E-20 123.2 9.4 81 66-152 160-240 (321)
34 smart00360 RRM RNA recognition 99.6 4.6E-15 1E-19 99.0 8.8 71 75-145 1-71 (71)
35 TIGR01628 PABP-1234 polyadenyl 99.6 4.1E-15 8.8E-20 139.1 11.4 84 67-151 282-365 (562)
36 KOG0148 Apoptosis-promoting RN 99.6 2.7E-15 5.9E-20 123.3 7.6 82 70-151 62-143 (321)
37 KOG0114 Predicted RNA-binding 99.6 8.1E-15 1.8E-19 104.1 8.5 82 66-150 14-95 (124)
38 cd00590 RRM RRM (RNA recogniti 99.6 2.1E-14 4.5E-19 96.7 10.2 74 72-146 1-74 (74)
39 KOG0117 Heterogeneous nuclear 99.6 7.8E-15 1.7E-19 127.9 9.9 82 67-148 80-162 (506)
40 COG0724 RNA-binding proteins ( 99.6 1.4E-14 3E-19 121.2 10.4 80 70-149 115-194 (306)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 2.4E-14 5.1E-19 131.5 12.1 81 67-152 272-353 (481)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 2.2E-14 4.8E-19 131.7 10.6 77 69-151 1-79 (481)
43 KOG0145 RNA-binding protein EL 99.5 2E-14 4.3E-19 117.7 8.7 86 67-152 38-123 (360)
44 KOG0145 RNA-binding protein EL 99.5 4.6E-14 1E-18 115.6 10.4 82 69-150 277-358 (360)
45 KOG0117 Heterogeneous nuclear 99.5 1.3E-14 2.8E-19 126.5 7.7 76 70-153 259-334 (506)
46 KOG0146 RNA-binding protein ET 99.5 8.2E-15 1.8E-19 120.4 5.7 89 65-153 280-368 (371)
47 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.4E-13 3.1E-18 127.0 14.1 72 70-148 175-258 (509)
48 KOG0108 mRNA cleavage and poly 99.5 2.6E-14 5.7E-19 127.6 8.7 82 71-152 19-100 (435)
49 KOG0127 Nucleolar protein fibr 99.5 5.3E-14 1.2E-18 125.3 9.3 88 64-151 286-379 (678)
50 KOG0144 RNA-binding protein CU 99.5 1.6E-14 3.6E-19 125.4 6.0 86 68-154 122-210 (510)
51 KOG0109 RNA-binding protein LA 99.5 3.2E-14 7E-19 118.1 6.6 73 71-151 3-75 (346)
52 KOG0144 RNA-binding protein CU 99.5 6E-14 1.3E-18 121.9 7.6 87 67-153 31-120 (510)
53 KOG0127 Nucleolar protein fibr 99.5 9.3E-14 2E-18 123.8 8.9 83 69-152 116-198 (678)
54 KOG0415 Predicted peptidyl pro 99.5 5E-14 1.1E-18 119.7 6.7 83 68-150 237-319 (479)
55 KOG4212 RNA-binding protein hn 99.5 4.1E-13 8.9E-18 117.0 12.1 80 70-150 44-124 (608)
56 PF13893 RRM_5: RNA recognitio 99.5 2.6E-13 5.7E-18 88.0 8.1 56 87-147 1-56 (56)
57 KOG0116 RasGAP SH3 binding pro 99.5 6.7E-13 1.5E-17 118.0 12.8 86 66-152 284-369 (419)
58 smart00361 RRM_1 RNA recogniti 99.5 4.2E-13 9E-18 91.2 8.6 61 84-144 2-69 (70)
59 KOG0109 RNA-binding protein LA 99.4 1.2E-13 2.6E-18 114.7 6.3 98 67-177 75-172 (346)
60 KOG0147 Transcriptional coacti 99.4 1.8E-13 3.8E-18 122.2 6.5 79 73-151 281-359 (549)
61 KOG0124 Polypyrimidine tract-b 99.4 9.9E-14 2.1E-18 118.4 4.4 78 70-147 113-190 (544)
62 KOG4206 Spliceosomal protein s 99.4 1.5E-12 3.3E-17 104.9 8.3 83 66-151 5-91 (221)
63 KOG0131 Splicing factor 3b, su 99.4 2.1E-12 4.5E-17 100.8 7.2 90 64-153 90-180 (203)
64 KOG0153 Predicted RNA-binding 99.3 9.6E-12 2.1E-16 105.7 9.1 78 66-149 224-302 (377)
65 KOG4208 Nucleolar RNA-binding 99.3 1.4E-11 3.1E-16 98.0 8.3 84 67-150 46-130 (214)
66 KOG0123 Polyadenylate-binding 99.3 1.4E-11 2.9E-16 109.1 8.8 79 73-154 79-157 (369)
67 KOG4205 RNA-binding protein mu 99.3 1.3E-11 2.8E-16 106.1 7.7 88 69-157 96-183 (311)
68 KOG4661 Hsp27-ERE-TATA-binding 99.2 2E-11 4.3E-16 109.7 7.8 83 69-151 404-486 (940)
69 KOG4212 RNA-binding protein hn 99.2 3.5E-11 7.6E-16 105.1 7.3 75 68-147 534-608 (608)
70 KOG0110 RNA-binding protein (R 99.2 5.9E-11 1.3E-15 109.0 8.7 78 71-148 516-596 (725)
71 KOG1995 Conserved Zn-finger pr 99.2 1E-10 2.2E-15 100.2 8.6 85 67-151 63-155 (351)
72 KOG0533 RRM motif-containing p 99.2 1.3E-10 2.9E-15 96.4 9.0 85 67-152 80-164 (243)
73 KOG4205 RNA-binding protein mu 99.2 3.2E-11 7E-16 103.7 5.4 85 69-154 5-89 (311)
74 PF04059 RRM_2: RNA recognitio 99.2 2.8E-10 6E-15 81.6 9.4 80 71-150 2-87 (97)
75 KOG0124 Polypyrimidine tract-b 99.1 1.3E-10 2.8E-15 99.6 7.0 80 70-149 210-289 (544)
76 KOG0146 RNA-binding protein ET 99.1 1.1E-10 2.4E-15 96.3 6.2 85 69-154 18-105 (371)
77 KOG0106 Alternative splicing f 99.1 9E-11 1.9E-15 95.4 5.5 73 71-151 2-74 (216)
78 KOG0123 Polyadenylate-binding 99.1 2.3E-10 5E-15 101.3 8.5 74 71-150 2-75 (369)
79 KOG0110 RNA-binding protein (R 99.1 6E-11 1.3E-15 109.0 4.8 83 68-150 611-693 (725)
80 KOG1548 Transcription elongati 99.1 3E-10 6.4E-15 96.7 8.2 84 67-151 131-222 (382)
81 KOG4454 RNA binding protein (R 99.1 4.9E-11 1.1E-15 95.7 2.1 81 66-148 5-85 (267)
82 KOG4209 Splicing factor RNPS1, 99.1 4.1E-10 8.9E-15 93.4 7.3 83 67-150 98-180 (231)
83 KOG1457 RNA binding protein (c 99.0 1.9E-09 4.2E-14 86.9 9.9 85 69-153 33-121 (284)
84 KOG0147 Transcriptional coacti 99.0 4.5E-10 9.8E-15 100.7 4.9 82 70-152 179-260 (549)
85 KOG0151 Predicted splicing reg 98.9 3.8E-09 8.3E-14 97.2 6.7 83 67-149 171-256 (877)
86 KOG4660 Protein Mei2, essentia 98.8 3E-09 6.5E-14 95.7 4.2 71 68-143 73-143 (549)
87 KOG1190 Polypyrimidine tract-b 98.8 2.8E-08 6.1E-13 86.5 9.6 82 70-156 297-379 (492)
88 KOG4211 Splicing factor hnRNP- 98.8 2.2E-08 4.7E-13 89.0 8.3 82 66-151 6-87 (510)
89 KOG0120 Splicing factor U2AF, 98.7 1.2E-08 2.6E-13 92.3 4.5 84 70-153 289-372 (500)
90 KOG4849 mRNA cleavage factor I 98.7 2.6E-08 5.6E-13 85.2 5.2 74 71-144 81-156 (498)
91 KOG0106 Alternative splicing f 98.6 2.2E-08 4.8E-13 81.5 3.6 74 63-144 92-165 (216)
92 KOG0226 RNA-binding proteins [ 98.6 4.4E-08 9.5E-13 80.5 5.2 83 68-150 188-270 (290)
93 PF11608 Limkain-b1: Limkain b 98.6 1.5E-07 3.2E-12 64.8 6.8 70 71-150 3-77 (90)
94 PF08777 RRM_3: RNA binding mo 98.6 1E-07 2.2E-12 69.8 5.3 72 70-147 1-77 (105)
95 KOG4211 Splicing factor hnRNP- 98.6 1.9E-07 4.2E-12 83.1 8.1 79 68-148 101-180 (510)
96 KOG1457 RNA binding protein (c 98.5 1E-07 2.2E-12 77.0 4.4 65 70-138 210-274 (284)
97 KOG4206 Spliceosomal protein s 98.5 5E-07 1.1E-11 73.3 8.0 77 67-148 143-220 (221)
98 KOG1456 Heterogeneous nuclear 98.5 6.2E-07 1.3E-11 77.5 9.0 82 65-151 282-364 (494)
99 KOG4210 Nuclear localization s 98.4 2.3E-07 4.9E-12 79.6 4.6 82 69-151 183-265 (285)
100 KOG1456 Heterogeneous nuclear 98.4 1.9E-06 4.1E-11 74.6 8.9 83 64-151 114-200 (494)
101 KOG2314 Translation initiation 98.4 1.1E-06 2.4E-11 79.5 7.7 79 69-148 57-142 (698)
102 COG5175 MOT2 Transcriptional r 98.3 1.4E-06 3E-11 74.5 6.4 81 70-150 114-203 (480)
103 KOG1855 Predicted RNA-binding 98.3 1E-06 2.3E-11 77.3 5.3 74 63-136 224-310 (484)
104 KOG4307 RNA binding protein RB 98.3 2.3E-06 4.9E-11 79.2 7.7 75 72-146 869-943 (944)
105 PF14605 Nup35_RRM_2: Nup53/35 98.2 3.2E-06 7E-11 53.9 5.0 52 71-129 2-53 (53)
106 KOG1548 Transcription elongati 98.2 2.1E-05 4.6E-10 67.5 10.5 78 69-150 264-352 (382)
107 PF05172 Nup35_RRM: Nup53/35/4 98.1 9.8E-06 2.1E-10 58.5 6.9 78 69-148 5-90 (100)
108 PF08952 DUF1866: Domain of un 98.1 1.3E-05 2.8E-10 61.4 7.7 77 67-152 24-109 (146)
109 KOG0105 Alternative splicing f 98.1 2.4E-05 5.1E-10 61.9 9.1 71 69-146 114-186 (241)
110 KOG0129 Predicted RNA-binding 98.1 1.2E-05 2.7E-10 72.2 8.0 68 63-130 363-431 (520)
111 KOG3152 TBP-binding protein, a 98.0 2.8E-06 6.1E-11 70.1 2.8 72 70-141 74-157 (278)
112 KOG1190 Polypyrimidine tract-b 98.0 1.1E-05 2.5E-10 70.6 6.6 78 68-149 412-490 (492)
113 KOG0120 Splicing factor U2AF, 98.0 1.4E-05 3E-10 72.8 7.4 62 87-148 426-490 (500)
114 KOG1365 RNA-binding protein Fu 98.0 7.9E-06 1.7E-10 71.0 5.3 79 69-148 279-360 (508)
115 KOG4676 Splicing factor, argin 98.0 1.1E-05 2.4E-10 70.3 5.0 75 71-146 8-85 (479)
116 KOG2416 Acinus (induces apopto 97.9 1E-05 2.2E-10 73.8 4.1 78 66-149 440-521 (718)
117 KOG2202 U2 snRNP splicing fact 97.8 8.3E-06 1.8E-10 67.4 2.1 64 85-149 83-147 (260)
118 KOG0129 Predicted RNA-binding 97.7 5.7E-05 1.2E-09 68.1 6.0 62 70-132 259-326 (520)
119 KOG1996 mRNA splicing factor [ 97.7 0.00012 2.7E-09 61.6 6.9 65 84-148 300-365 (378)
120 PF10309 DUF2414: Protein of u 97.6 0.00033 7.1E-09 45.9 7.0 55 70-132 5-62 (62)
121 KOG0112 Large RNA-binding prot 97.6 9.4E-05 2E-09 70.6 4.8 80 66-151 451-532 (975)
122 KOG4307 RNA binding protein RB 97.5 6.6E-05 1.4E-09 69.8 3.5 83 65-147 429-511 (944)
123 KOG2193 IGF-II mRNA-binding pr 97.5 9.9E-05 2.1E-09 65.1 3.4 76 71-152 2-78 (584)
124 KOG0128 RNA-binding protein SA 97.4 8.6E-05 1.9E-09 70.5 2.4 80 70-150 736-815 (881)
125 KOG0128 RNA-binding protein SA 97.4 9.3E-06 2E-10 76.8 -4.0 72 71-142 668-739 (881)
126 KOG1365 RNA-binding protein Fu 97.3 0.00063 1.4E-08 59.5 6.9 72 71-144 162-237 (508)
127 KOG4660 Protein Mei2, essentia 97.3 0.00041 8.8E-09 63.2 5.3 81 71-151 389-474 (549)
128 PF03467 Smg4_UPF3: Smg-4/UPF3 97.2 0.00067 1.5E-08 54.2 5.4 82 68-149 5-97 (176)
129 KOG0112 Large RNA-binding prot 97.2 8.3E-05 1.8E-09 70.9 -0.1 79 69-148 371-449 (975)
130 KOG2068 MOT2 transcription fac 97.1 0.00019 4.2E-09 61.7 1.4 81 71-151 78-164 (327)
131 PF15023 DUF4523: Protein of u 97.1 0.0033 7.1E-08 47.9 7.6 74 67-148 83-160 (166)
132 PF07576 BRAP2: BRCA1-associat 97.0 0.0073 1.6E-07 44.4 8.8 67 71-139 14-81 (110)
133 PF08675 RNA_bind: RNA binding 97.0 0.0026 5.6E-08 44.0 5.7 55 71-134 10-64 (87)
134 PF03880 DbpA: DbpA RNA bindin 97.0 0.004 8.8E-08 42.4 6.6 67 72-147 2-74 (74)
135 KOG2135 Proteins containing th 96.9 0.00053 1.1E-08 61.4 2.2 74 69-149 371-445 (526)
136 KOG4285 Mitotic phosphoprotein 96.9 0.0043 9.4E-08 52.7 7.3 70 70-147 197-267 (350)
137 KOG0115 RNA-binding protein p5 96.8 0.0016 3.5E-08 54.1 4.2 76 71-147 32-111 (275)
138 KOG2591 c-Mpl binding protein, 96.7 0.0027 5.9E-08 58.0 5.0 70 69-145 174-247 (684)
139 PRK11634 ATP-dependent RNA hel 96.6 0.064 1.4E-06 51.3 14.2 71 71-150 487-563 (629)
140 KOG2253 U1 snRNP complex, subu 96.5 0.0014 3E-08 60.9 2.3 72 66-146 36-107 (668)
141 PF04847 Calcipressin: Calcipr 96.5 0.0075 1.6E-07 48.5 6.2 62 83-150 8-71 (184)
142 KOG0804 Cytoplasmic Zn-finger 96.3 0.017 3.6E-07 51.8 7.6 68 70-139 74-142 (493)
143 KOG4210 Nuclear localization s 96.1 0.0029 6.2E-08 54.4 1.7 80 69-148 87-166 (285)
144 KOG4574 RNA-binding protein (c 96.0 0.0052 1.1E-07 58.8 3.2 77 73-155 301-379 (1007)
145 PF11767 SET_assoc: Histone ly 95.3 0.1 2.3E-06 34.6 6.5 55 81-144 11-65 (66)
146 KOG2193 IGF-II mRNA-binding pr 95.1 0.0011 2.4E-08 58.7 -4.3 80 70-153 80-160 (584)
147 KOG4676 Splicing factor, argin 94.9 0.0035 7.5E-08 55.1 -1.8 76 71-151 152-227 (479)
148 KOG2318 Uncharacterized conser 94.6 0.2 4.2E-06 46.5 8.4 78 67-144 171-300 (650)
149 PF07530 PRE_C2HC: Associated 93.7 0.14 3.1E-06 34.2 4.3 63 85-150 2-65 (68)
150 KOG4019 Calcineurin-mediated s 93.2 0.087 1.9E-06 41.8 2.9 78 68-151 8-91 (193)
151 KOG4483 Uncharacterized conser 92.7 0.35 7.7E-06 42.9 6.4 55 69-130 390-445 (528)
152 smart00596 PRE_C2HC PRE_C2HC d 92.7 0.21 4.6E-06 33.3 3.8 62 85-149 2-64 (69)
153 PF08648 DUF1777: Protein of u 91.8 1.3 2.8E-05 35.3 8.3 6 115-120 134-139 (180)
154 PF03468 XS: XS domain; Inter 90.2 0.46 1E-05 35.2 3.9 57 71-130 9-75 (116)
155 KOG2891 Surface glycoprotein [ 89.7 0.15 3.2E-06 43.2 1.0 36 69-104 148-195 (445)
156 KOG4410 5-formyltetrahydrofola 89.6 1 2.2E-05 38.4 5.9 49 69-123 329-378 (396)
157 KOG1295 Nonsense-mediated deca 88.1 0.56 1.2E-05 41.5 3.5 70 69-138 6-78 (376)
158 COG5638 Uncharacterized conser 88.1 1.6 3.5E-05 39.0 6.3 39 64-102 140-183 (622)
159 KOG2295 C2H2 Zn-finger protein 86.8 0.09 2E-06 48.4 -2.1 73 69-141 230-302 (648)
160 PF10567 Nab6_mRNP_bdg: RNA-re 86.7 1.5 3.3E-05 37.5 5.2 79 70-148 15-106 (309)
161 COG0724 RNA-binding proteins ( 86.1 0.86 1.9E-05 37.3 3.5 67 64-130 219-285 (306)
162 KOG4365 Uncharacterized conser 83.9 0.16 3.4E-06 45.6 -1.9 77 71-148 4-80 (572)
163 PRK10629 EnvZ/OmpR regulon mod 83.6 11 0.00025 28.3 8.2 71 70-148 35-109 (127)
164 PF00403 HMA: Heavy-metal-asso 83.2 5.7 0.00012 25.2 5.8 54 72-131 1-58 (62)
165 PRK14548 50S ribosomal protein 81.1 7.4 0.00016 27.1 5.9 57 73-132 23-81 (84)
166 KOG2135 Proteins containing th 80.4 2.8 6.2E-05 38.2 4.5 66 78-151 205-270 (526)
167 KOG4008 rRNA processing protei 80.4 3.7 7.9E-05 34.1 4.8 36 66-101 36-71 (261)
168 PRK11901 hypothetical protein; 79.9 4.6 9.9E-05 35.2 5.5 61 70-135 245-307 (327)
169 KOG4454 RNA binding protein (R 78.2 0.52 1.1E-05 38.7 -0.7 73 70-143 80-156 (267)
170 KOG3702 Nuclear polyadenylated 76.3 1.3 2.8E-05 41.9 1.3 73 71-144 512-584 (681)
171 COG2608 CopZ Copper chaperone 72.5 15 0.00033 24.3 5.5 54 71-130 4-61 (71)
172 KOG3262 H/ACA small nucleolar 71.8 14 0.0003 29.6 5.8 8 93-100 97-104 (215)
173 PF14026 DUF4242: Protein of u 71.8 28 0.00062 23.6 8.4 62 73-137 3-71 (77)
174 COG3254 Uncharacterized conser 71.7 16 0.00035 26.4 5.6 43 85-130 27-69 (105)
175 KOG3424 40S ribosomal protein 70.1 17 0.00037 26.9 5.5 55 73-128 23-85 (132)
176 PF14893 PNMA: PNMA 69.8 4.9 0.00011 35.4 3.2 26 68-93 16-41 (331)
177 PF02714 DUF221: Domain of unk 69.2 5.7 0.00012 34.5 3.6 32 115-148 1-32 (325)
178 KOG4213 RNA-binding protein La 69.0 7 0.00015 31.2 3.6 50 82-131 118-169 (205)
179 COG0150 PurM Phosphoribosylami 67.5 2 4.3E-05 37.7 0.3 48 84-135 275-322 (345)
180 KOG0132 RNA polymerase II C-te 67.5 40 0.00086 33.0 8.8 19 112-130 509-527 (894)
181 PF08734 GYD: GYD domain; Int 67.4 24 0.00052 24.7 5.8 46 84-133 22-68 (91)
182 cd06405 PB1_Mekk2_3 The PB1 do 65.4 40 0.00087 22.9 7.8 62 76-146 14-76 (79)
183 PF13291 ACT_4: ACT domain; PD 64.9 39 0.00083 22.5 6.6 65 71-135 7-72 (80)
184 TIGR03636 L23_arch archaeal ri 64.6 27 0.00058 23.8 5.4 57 72-131 15-73 (77)
185 PRK11230 glycolate oxidase sub 64.3 28 0.00061 32.5 7.3 63 70-133 189-255 (499)
186 COG5193 LHP1 La protein, small 63.6 3.2 7E-05 37.1 0.9 61 70-130 174-244 (438)
187 PF15513 DUF4651: Domain of un 63.1 18 0.00038 23.7 4.0 20 84-103 8-27 (62)
188 CHL00123 rps6 ribosomal protei 61.4 41 0.0009 23.9 6.2 57 72-130 10-80 (97)
189 KOG2187 tRNA uracil-5-methyltr 61.1 7.6 0.00017 36.1 2.8 39 112-150 63-101 (534)
190 PF07292 NID: Nmi/IFP 35 domai 60.2 17 0.00038 25.5 3.9 31 115-146 1-33 (88)
191 PF07876 Dabb: Stress responsi 59.1 56 0.0012 22.5 7.1 56 73-128 4-70 (97)
192 KOG4207 Predicted splicing fac 58.6 1E+02 0.0023 25.4 10.1 57 83-139 29-87 (256)
193 cd04882 ACT_Bt0572_2 C-termina 56.2 47 0.001 20.7 6.4 51 83-136 12-63 (65)
194 PF08156 NOP5NT: NOP5NT (NUC12 56.2 4 8.7E-05 27.1 0.2 38 85-132 27-64 (67)
195 cd04908 ACT_Bt0572_1 N-termina 56.1 51 0.0011 21.1 8.3 49 83-136 14-63 (66)
196 cd04883 ACT_AcuB C-terminal AC 55.9 52 0.0011 21.1 8.6 51 83-136 14-67 (72)
197 KOG0156 Cytochrome P450 CYP2 s 55.8 24 0.00051 32.9 5.2 62 71-142 33-97 (489)
198 PF01282 Ribosomal_S24e: Ribos 55.0 68 0.0015 22.2 7.2 47 80-127 11-62 (84)
199 smart00666 PB1 PB1 domain. Pho 55.0 61 0.0013 21.6 7.2 57 72-133 11-69 (81)
200 PF05036 SPOR: Sporulation rel 54.7 3.9 8.4E-05 26.9 -0.1 60 71-133 5-65 (76)
201 PRK10905 cell division protein 54.6 29 0.00064 30.3 5.1 59 71-134 248-308 (328)
202 cd04889 ACT_PDH-BS-like C-term 54.6 48 0.001 20.3 6.6 44 83-129 11-55 (56)
203 PF14581 SseB_C: SseB protein 54.1 32 0.00069 24.7 4.7 80 69-148 4-89 (108)
204 cd04878 ACT_AHAS N-terminal AC 53.4 54 0.0012 20.5 7.6 61 72-134 2-64 (72)
205 cd00027 BRCT Breast Cancer Sup 53.2 48 0.0011 20.4 5.1 26 71-96 2-27 (72)
206 PF05189 RTC_insert: RNA 3'-te 53.0 37 0.00081 24.2 4.9 46 72-117 12-62 (103)
207 PF02426 MIase: Muconolactone 52.7 80 0.0017 22.3 7.6 59 76-138 9-77 (91)
208 cd04903 ACT_LSD C-terminal ACT 52.6 55 0.0012 20.4 6.1 58 73-133 2-60 (71)
209 KOG4840 Predicted hydrolases o 51.4 34 0.00075 28.6 4.8 73 70-147 37-115 (299)
210 PF07292 NID: Nmi/IFP 35 domai 51.0 8.5 0.00018 27.0 1.1 23 69-91 51-73 (88)
211 PRK08559 nusG transcription an 50.6 43 0.00094 25.9 5.2 34 97-135 36-69 (153)
212 COG5507 Uncharacterized conser 50.4 18 0.00039 25.9 2.7 21 112-132 66-86 (117)
213 PF11823 DUF3343: Protein of u 49.7 24 0.00053 23.4 3.2 25 114-138 3-27 (73)
214 PF07045 DUF1330: Protein of u 49.6 54 0.0012 21.1 4.8 43 86-130 10-57 (65)
215 PF09707 Cas_Cas2CT1978: CRISP 49.0 43 0.00093 23.4 4.4 49 69-120 24-72 (86)
216 smart00195 DSPc Dual specifici 48.9 59 0.0013 24.0 5.7 17 72-88 7-23 (138)
217 PF09383 NIL: NIL domain; Int 48.9 30 0.00065 23.0 3.6 55 80-134 12-68 (76)
218 PF12623 Hen1_L: RNA repair, l 48.6 35 0.00075 28.4 4.4 62 70-132 118-183 (245)
219 PF03439 Spt5-NGN: Early trans 48.4 35 0.00077 23.4 4.0 26 111-136 43-68 (84)
220 PRK01178 rps24e 30S ribosomal 48.1 96 0.0021 22.3 6.2 47 81-128 30-81 (99)
221 PF14111 DUF4283: Domain of un 47.3 5.5 0.00012 30.3 -0.3 72 72-149 17-91 (153)
222 cd04879 ACT_3PGDH-like ACT_3PG 47.3 68 0.0015 19.9 5.9 57 73-132 2-59 (71)
223 PF12829 Mhr1: Transcriptional 46.5 57 0.0012 23.0 4.7 52 78-133 20-72 (91)
224 PF01842 ACT: ACT domain; Int 46.3 70 0.0015 19.8 5.6 57 73-132 3-61 (66)
225 cd06404 PB1_aPKC PB1 domain is 46.2 99 0.0021 21.5 7.9 66 72-144 10-80 (83)
226 COG4907 Predicted membrane pro 45.8 51 0.0011 30.4 5.4 14 122-135 525-538 (595)
227 TIGR00387 glcD glycolate oxida 45.7 71 0.0015 28.9 6.6 62 70-132 131-197 (413)
228 COG0079 HisC Histidinol-phosph 45.7 30 0.00064 30.8 4.0 43 69-121 145-191 (356)
229 PF02829 3H: 3H domain; Inter 45.6 96 0.0021 22.2 5.9 51 81-134 8-58 (98)
230 PF04127 DFP: DNA / pantothena 44.9 81 0.0018 25.2 6.1 59 72-132 20-79 (185)
231 TIGR00587 nfo apurinic endonuc 44.7 40 0.00087 28.6 4.6 58 70-133 137-202 (274)
232 COG5470 Uncharacterized conser 44.6 49 0.0011 23.5 4.1 18 112-129 53-70 (96)
233 KOG2854 Possible pfkB family c 44.5 30 0.00065 30.4 3.7 63 68-130 158-230 (343)
234 COG1098 VacB Predicted RNA bin 44.5 54 0.0012 24.6 4.5 32 115-146 21-60 (129)
235 COG0002 ArgC Acetylglutamate s 44.4 48 0.001 29.4 5.0 45 78-122 253-303 (349)
236 PRK04199 rpl10e 50S ribosomal 42.9 1.7E+02 0.0037 23.3 7.6 26 114-140 130-159 (172)
237 PTZ00191 60S ribosomal protein 42.5 83 0.0018 24.3 5.4 54 72-128 83-138 (145)
238 cd04880 ACT_AAAH-PDT-like ACT 42.2 96 0.0021 20.2 7.0 52 82-134 11-66 (75)
239 PF00585 Thr_dehydrat_C: C-ter 42.2 79 0.0017 22.1 5.0 62 72-135 11-74 (91)
240 PF01071 GARS_A: Phosphoribosy 42.0 75 0.0016 25.7 5.5 46 83-132 25-70 (194)
241 PF07237 DUF1428: Protein of u 41.5 1.3E+02 0.0028 21.8 6.0 47 86-132 24-85 (103)
242 PLN02805 D-lactate dehydrogena 40.9 1.1E+02 0.0024 29.1 7.2 51 82-133 278-332 (555)
243 cd04887 ACT_MalLac-Enz ACT_Mal 40.8 98 0.0021 19.9 7.6 61 73-134 2-63 (74)
244 cd04904 ACT_AAAH ACT domain of 40.2 1.1E+02 0.0023 20.2 7.6 50 83-134 13-65 (74)
245 cd04905 ACT_CM-PDT C-terminal 40.2 1.1E+02 0.0024 20.3 7.0 51 83-134 14-68 (80)
246 KOG1999 RNA polymerase II tran 40.0 86 0.0019 31.6 6.3 33 111-144 209-241 (1024)
247 PF05336 DUF718: Domain of unk 40.0 92 0.002 22.4 5.2 42 84-128 25-66 (106)
248 COG5584 Predicted small secret 39.9 63 0.0014 23.0 4.1 32 77-108 29-60 (103)
249 COG0030 KsgA Dimethyladenosine 39.5 32 0.0007 29.2 3.1 34 70-103 95-128 (259)
250 PF09869 DUF2096: Uncharacteri 39.4 96 0.0021 24.5 5.4 50 72-132 114-163 (169)
251 cd04902 ACT_3PGDH-xct C-termin 39.4 1E+02 0.0022 19.6 5.6 59 74-134 3-64 (73)
252 PF13820 Nucleic_acid_bd: Puta 39.2 62 0.0014 25.1 4.4 57 72-132 6-65 (149)
253 PHA01632 hypothetical protein 39.0 33 0.00072 21.8 2.3 21 73-93 19-39 (64)
254 COG5353 Uncharacterized protei 38.8 1.6E+02 0.0035 22.8 6.4 54 71-124 88-154 (161)
255 COG0225 MsrA Peptide methionin 38.6 73 0.0016 25.3 4.7 73 72-148 59-136 (174)
256 PLN02968 Probable N-acetyl-gam 38.4 42 0.00091 30.2 3.9 31 72-103 280-311 (381)
257 PF05573 NosL: NosL; InterPro 38.1 19 0.00041 27.7 1.4 23 112-134 114-136 (149)
258 PF13721 SecD-TM1: SecD export 37.7 1.5E+02 0.0033 21.2 7.6 58 71-136 32-93 (101)
259 PRK13011 formyltetrahydrofolat 37.6 1.2E+02 0.0025 26.2 6.3 61 77-138 56-116 (286)
260 PF11411 DNA_ligase_IV: DNA li 37.6 24 0.00053 20.3 1.4 16 80-95 19-34 (36)
261 cd04909 ACT_PDH-BS C-terminal 37.4 1.1E+02 0.0024 19.4 8.2 48 83-132 14-62 (69)
262 PRK06737 acetolactate synthase 37.1 1.3E+02 0.0029 20.3 7.6 61 72-135 6-67 (76)
263 KOG3671 Actin regulatory prote 36.5 66 0.0014 29.9 4.7 49 81-134 89-137 (569)
264 PF00521 DNA_topoisoIV: DNA gy 35.9 72 0.0016 29.1 5.0 57 71-131 217-277 (426)
265 COG4010 Uncharacterized protei 35.5 1.2E+02 0.0026 23.4 5.2 46 77-132 118-163 (170)
266 PRK06545 prephenate dehydrogen 35.3 2.2E+02 0.0047 25.2 7.9 65 67-134 287-353 (359)
267 PF09902 DUF2129: Uncharacteri 35.2 79 0.0017 21.2 3.8 40 89-137 15-54 (71)
268 PF00564 PB1: PB1 domain; Int 35.2 88 0.0019 20.8 4.3 55 76-135 16-72 (84)
269 PRK11863 N-acetyl-gamma-glutam 34.4 1.1E+02 0.0023 26.9 5.6 33 71-103 210-245 (313)
270 PTZ00372 endonuclease 4-like p 34.3 80 0.0017 28.8 4.9 60 69-134 267-334 (413)
271 smart00434 TOP4c DNA Topoisome 34.2 1.1E+02 0.0023 28.3 5.8 59 71-130 233-295 (445)
272 TIGR01873 cas_CT1978 CRISPR-as 34.0 45 0.00098 23.3 2.6 50 69-121 24-74 (87)
273 TIGR03221 muco_delta muconolac 33.8 1.7E+02 0.0037 20.6 7.8 64 76-145 8-81 (90)
274 TIGR01033 DNA-binding regulato 33.5 1.6E+02 0.0034 24.7 6.3 46 68-120 92-143 (238)
275 PF14401 RLAN: RimK-like ATPgr 33.2 83 0.0018 24.4 4.3 58 71-128 88-146 (153)
276 PF08544 GHMP_kinases_C: GHMP 32.7 1.5E+02 0.0032 19.6 6.1 44 85-133 37-80 (85)
277 cd04894 ACT_ACR-like_1 ACT dom 32.4 1.2E+02 0.0026 20.0 4.1 38 77-120 6-45 (69)
278 PF12687 DUF3801: Protein of u 32.2 99 0.0021 25.2 4.8 58 81-140 38-98 (204)
279 PF10567 Nab6_mRNP_bdg: RNA-re 32.2 3.3E+02 0.0071 23.7 7.9 65 69-134 139-213 (309)
280 COG1207 GlmU N-acetylglucosami 32.1 1.4E+02 0.003 27.5 6.0 65 70-134 97-173 (460)
281 PF14657 Integrase_AP2: AP2-li 32.1 1E+02 0.0022 18.3 3.8 30 104-133 9-38 (46)
282 PRK11558 putative ssRNA endonu 31.7 1E+02 0.0022 22.0 4.2 50 69-121 26-75 (97)
283 PLN02707 Soluble inorganic pyr 31.7 46 0.00099 28.4 2.8 40 85-133 208-248 (267)
284 cd00187 TOP4c DNA Topoisomeras 31.6 1.6E+02 0.0034 27.2 6.4 60 71-132 226-289 (445)
285 PF13046 DUF3906: Protein of u 31.4 59 0.0013 21.3 2.6 34 82-117 30-63 (64)
286 KOG1232 Proteins containing th 31.3 65 0.0014 29.1 3.7 53 76-129 230-286 (511)
287 PTZ00071 40S ribosomal protein 31.3 1.3E+02 0.0027 22.9 4.8 46 81-127 35-86 (132)
288 PF08206 OB_RNB: Ribonuclease 31.3 19 0.00041 22.9 0.4 37 111-148 7-44 (58)
289 TIGR00279 L10e ribosomal prote 31.3 1.9E+02 0.0042 22.9 6.1 18 121-139 141-158 (172)
290 TIGR00405 L26e_arch ribosomal 31.3 61 0.0013 24.6 3.3 25 111-135 37-61 (145)
291 COG1369 POP5 RNase P/RNase MRP 31.1 2.2E+02 0.0048 21.3 6.0 64 80-146 27-99 (124)
292 cd04876 ACT_RelA-SpoT ACT dom 30.9 1.2E+02 0.0026 18.1 7.1 49 83-134 11-62 (71)
293 KOG3062 RNA polymerase II elon 30.7 1.3E+02 0.0027 25.5 5.1 52 72-123 3-57 (281)
294 cd04931 ACT_PAH ACT domain of 30.6 1.9E+02 0.0041 20.2 8.0 58 74-133 17-79 (90)
295 cd02116 ACT ACT domains are co 30.4 1.1E+02 0.0023 17.2 7.4 48 83-132 11-59 (60)
296 PRK12450 foldase protein PrsA; 30.4 1.1E+02 0.0024 26.5 5.1 39 81-133 132-170 (309)
297 PTZ00338 dimethyladenosine tra 30.3 43 0.00093 29.0 2.5 26 72-97 103-128 (294)
298 cd04881 ACT_HSDH-Hom ACT_HSDH_ 30.0 1.5E+02 0.0032 18.8 7.5 52 80-135 10-66 (79)
299 PF14111 DUF4283: Domain of un 29.6 63 0.0014 24.3 3.1 34 72-105 106-140 (153)
300 PF00398 RrnaAD: Ribosomal RNA 29.6 50 0.0011 27.8 2.8 23 70-92 97-119 (262)
301 PF13689 DUF4154: Domain of un 29.6 1.1E+02 0.0024 23.1 4.5 60 84-148 2-61 (145)
302 PF08442 ATP-grasp_2: ATP-gras 29.3 1.5E+02 0.0032 24.1 5.4 54 82-138 25-81 (202)
303 COG3102 Uncharacterized protei 29.2 87 0.0019 24.8 3.7 44 112-155 109-156 (185)
304 KOG0633 Histidinol phosphate a 29.1 73 0.0016 27.4 3.5 44 81-135 176-219 (375)
305 PF11491 DUF3213: Protein of u 29.1 95 0.0021 21.5 3.4 67 73-146 3-73 (88)
306 PRK00274 ksgA 16S ribosomal RN 29.1 55 0.0012 27.7 2.9 22 72-93 107-128 (272)
307 cd04917 ACT_AKiii-LysC-EC_2 AC 29.0 1.1E+02 0.0023 19.3 3.7 16 121-136 47-62 (64)
308 PF03389 MobA_MobL: MobA/MobL 28.9 1.4E+02 0.0031 24.4 5.3 47 72-121 69-123 (216)
309 COG5227 SMT3 Ubiquitin-like pr 28.9 1.8E+02 0.0039 20.5 4.9 67 68-135 32-101 (103)
310 cd05992 PB1 The PB1 domain is 28.8 1.7E+02 0.0038 19.2 6.5 52 77-133 15-69 (81)
311 KOG1719 Dual specificity phosp 28.7 2.1E+02 0.0046 22.5 5.7 27 120-146 90-116 (183)
312 PLN03134 glycine-rich RNA-bind 28.7 1.8E+02 0.0038 22.1 5.4 24 121-146 82-105 (144)
313 COG0045 SucC Succinyl-CoA synt 28.5 2.5E+02 0.0055 25.3 6.9 65 82-149 26-97 (387)
314 smart00650 rADc Ribosomal RNA 28.3 76 0.0017 24.5 3.4 24 71-94 78-101 (169)
315 PRK12378 hypothetical protein; 28.3 1.9E+02 0.0041 24.2 5.9 38 68-105 89-132 (235)
316 CHL00030 rpl23 ribosomal prote 28.1 1.8E+02 0.0039 20.5 4.9 34 72-105 20-55 (93)
317 PLN02373 soluble inorganic pyr 28.0 75 0.0016 25.7 3.3 37 84-132 138-174 (188)
318 PF05727 UPF0228: Uncharacteri 28.0 1.3E+02 0.0029 22.5 4.3 58 77-146 58-122 (127)
319 COG0217 Uncharacterized conser 27.6 2.6E+02 0.0056 23.5 6.4 38 69-106 93-136 (241)
320 COG0360 RpsF Ribosomal protein 27.4 2.5E+02 0.0055 20.6 5.9 70 78-147 9-95 (112)
321 PRK00110 hypothetical protein; 27.3 1.8E+02 0.0039 24.5 5.6 45 69-120 93-143 (245)
322 cd06408 PB1_NoxR The PB1 domai 27.3 2.2E+02 0.0048 19.9 5.4 54 73-132 13-67 (86)
323 COG5236 Uncharacterized conser 27.1 1.4E+02 0.003 26.6 4.9 50 84-141 264-313 (493)
324 TIGR00755 ksgA dimethyladenosi 27.1 78 0.0017 26.4 3.5 25 72-96 96-120 (253)
325 PF07521 RMMBL: RNA-metabolisi 27.0 1.4E+02 0.0031 17.5 4.1 33 70-103 6-38 (43)
326 PRK05772 translation initiatio 26.8 1.8E+02 0.0039 26.0 5.8 50 81-132 2-56 (363)
327 PRK04405 prsA peptidylprolyl i 26.7 1.4E+02 0.0031 25.7 5.1 40 81-134 128-167 (298)
328 PF04026 SpoVG: SpoVG; InterP 26.6 1.3E+02 0.0028 20.9 3.9 26 96-121 2-27 (84)
329 PRK13610 photosystem II reacti 26.3 1.5E+02 0.0032 21.8 4.2 68 66-133 31-104 (113)
330 PRK08577 hypothetical protein; 26.3 2.8E+02 0.006 20.7 7.6 61 72-134 58-122 (136)
331 PF11004 Kdo_hydroxy: 3-deoxy- 26.0 1.3E+02 0.0029 25.7 4.6 47 66-113 17-64 (281)
332 PRK09631 DNA topoisomerase IV 25.9 2.4E+02 0.0051 27.4 6.7 59 70-132 220-282 (635)
333 smart00738 NGN In Spt5p, this 25.6 1.6E+02 0.0035 20.5 4.5 23 113-135 60-82 (106)
334 PF13193 AMP-binding_C: AMP-bi 25.5 1.9E+02 0.0042 18.6 5.2 52 86-139 1-55 (73)
335 PRK14046 malate--CoA ligase su 25.3 3E+02 0.0065 24.8 7.1 53 82-137 26-81 (392)
336 KOG2671 Putative RNA methylase 25.2 1E+02 0.0022 27.7 3.8 49 76-129 8-57 (421)
337 PRK14443 acylphosphatase; Prov 25.1 2.2E+02 0.0048 20.0 4.9 23 71-93 32-61 (93)
338 PRK09630 DNA topoisomerase IV 25.1 1.9E+02 0.0041 26.9 5.7 59 70-132 220-282 (479)
339 PRK12866 YciI-like protein; Re 24.8 2.6E+02 0.0055 19.7 6.3 27 113-140 50-76 (97)
340 KOG0256 1-aminocyclopropane-1- 24.4 1.6E+02 0.0035 26.9 5.0 65 81-153 242-306 (471)
341 PF06014 DUF910: Bacterial pro 24.2 60 0.0013 21.2 1.7 18 83-100 3-20 (62)
342 PF15643 Tox-PL-2: Papain fold 24.1 76 0.0016 22.8 2.4 29 118-146 18-46 (100)
343 KOG1579 Homocysteine S-methylt 24.1 2.1E+02 0.0046 25.1 5.5 60 80-148 139-198 (317)
344 PF01782 RimM: RimM N-terminal 23.8 1.2E+02 0.0027 20.3 3.5 24 112-136 54-77 (84)
345 PRK14429 acylphosphatase; Prov 23.7 2E+02 0.0042 20.0 4.5 21 72-92 31-58 (90)
346 cd00127 DSPc Dual specificity 23.7 1.7E+02 0.0037 21.3 4.5 19 70-88 6-24 (139)
347 PTZ00481 Membrane attack compl 23.5 83 0.0018 28.9 3.0 22 75-96 210-231 (524)
348 COG3444 Phosphotransferase sys 23.4 3.7E+02 0.008 21.1 6.4 22 112-133 76-97 (159)
349 cd08041 OBF_kDNA_ligase_like T 23.3 1.5E+02 0.0034 19.7 3.8 40 77-117 35-74 (77)
350 PF01762 Galactosyl_T: Galacto 23.3 88 0.0019 24.8 3.0 35 69-103 20-57 (195)
351 smart00518 AP2Ec AP endonuclea 23.2 2.5E+02 0.0053 23.4 5.9 57 69-131 132-196 (273)
352 PRK13014 methionine sulfoxide 23.2 2.7E+02 0.0058 22.4 5.7 73 72-147 61-137 (186)
353 PF09250 Prim-Pol: Bifunctiona 23.2 2.4E+02 0.0053 21.2 5.4 36 82-123 32-67 (163)
354 smart00633 Glyco_10 Glycosyl h 23.1 3.8E+02 0.0083 22.2 7.0 24 120-146 166-189 (254)
355 PRK14448 acylphosphatase; Prov 23.1 2.5E+02 0.0054 19.5 4.9 21 72-92 31-58 (90)
356 PRK13259 regulatory protein Sp 22.9 1.5E+02 0.0033 21.0 3.7 26 96-121 2-27 (94)
357 KOG4388 Hormone-sensitive lipa 22.9 1.3E+02 0.0028 29.0 4.2 59 69-133 788-852 (880)
358 KOG2855 Ribokinase [Carbohydra 22.8 1.2E+02 0.0027 26.7 3.9 26 70-95 61-86 (330)
359 cd06233 Peptidase_M14-like_6 P 22.6 97 0.0021 26.7 3.2 49 71-119 179-228 (283)
360 KOG3432 Vacuolar H+-ATPase V1 22.4 85 0.0018 23.0 2.4 24 80-103 43-66 (121)
361 cd04886 ACT_ThrD-II-like C-ter 22.4 2E+02 0.0044 17.7 7.6 50 83-132 11-64 (73)
362 PRK13612 photosystem II reacti 22.4 1.7E+02 0.0036 21.6 3.9 68 66-133 27-100 (113)
363 PF14350 Beta_protein: Beta pr 22.4 1.4E+02 0.003 26.2 4.3 37 82-126 137-174 (347)
364 COG4927 Predicted choloylglyci 22.3 99 0.0021 26.6 3.1 28 110-137 168-202 (336)
365 PRK08655 prephenate dehydrogen 22.3 2.3E+02 0.005 25.9 5.8 57 78-134 369-430 (437)
366 COG4874 Uncharacterized protei 22.2 1.6E+02 0.0035 24.9 4.3 54 70-124 158-222 (318)
367 PRK13562 acetolactate synthase 22.1 2.8E+02 0.0061 19.2 7.7 61 72-135 6-68 (84)
368 PF14751 DUF4474: Domain of un 22.0 2.2E+02 0.0048 23.9 5.1 41 114-154 147-194 (241)
369 cd04870 ACT_PSP_1 CT domains f 22.0 79 0.0017 20.8 2.1 19 77-95 46-64 (75)
370 KOG4246 Predicted DNA-binding 21.7 40 0.00086 33.4 0.7 6 127-132 437-442 (1194)
371 PRK14054 methionine sulfoxide 21.7 2.4E+02 0.0053 22.3 5.1 73 72-147 56-132 (172)
372 cd04874 ACT_Af1403 N-terminal 21.5 2.1E+02 0.0046 17.7 7.0 49 82-133 12-61 (72)
373 KOG0226 RNA-binding proteins [ 21.5 26 0.00055 29.7 -0.5 75 72-147 98-175 (290)
374 KOG1888 Putative phosphoinosit 21.4 1.6E+02 0.0036 29.1 4.7 72 69-146 308-383 (868)
375 PF02946 GTF2I: GTF2I-like rep 21.3 1.3E+02 0.0029 20.4 3.0 30 71-100 35-72 (76)
376 PRK07868 acyl-CoA synthetase; 21.3 6.2E+02 0.013 25.8 9.2 58 81-138 868-930 (994)
377 cd00412 pyrophosphatase Inorga 21.3 96 0.0021 24.2 2.7 39 83-132 115-153 (155)
378 PRK11700 hypothetical protein; 21.3 2.3E+02 0.005 22.8 4.9 19 80-98 49-67 (187)
379 PLN02516 methylenetetrahydrofo 21.3 85 0.0018 27.3 2.6 25 70-94 68-92 (299)
380 PF01037 AsnC_trans_reg: AsnC 21.2 2.3E+02 0.005 17.9 8.1 45 83-131 11-55 (74)
381 COG5594 Uncharacterized integr 21.1 1E+02 0.0022 30.5 3.3 25 112-136 357-381 (827)
382 cd04869 ACT_GcvR_2 ACT domains 21.0 2.5E+02 0.0054 18.3 5.3 34 73-106 2-36 (81)
383 PLN02936 epsilon-ring hydroxyl 20.9 1E+02 0.0022 28.3 3.3 41 82-131 37-77 (489)
384 cd00874 RNA_Cyclase_Class_II R 20.9 1.4E+02 0.0029 26.4 3.9 46 72-119 188-237 (326)
385 COG3643 Glutamate formiminotra 20.9 4.6E+02 0.01 22.3 6.6 30 74-103 7-36 (302)
386 cd07055 BMC_like_2 Bacterial M 20.8 2.5E+02 0.0055 18.2 4.2 32 100-132 25-57 (61)
387 KOG1134 Uncharacterized conser 20.8 1.1E+02 0.0024 30.2 3.5 36 111-148 304-339 (728)
388 PRK11633 cell division protein 20.7 3.6E+02 0.0077 22.4 6.1 72 69-142 148-221 (226)
389 TIGR02625 YiiL_rotase L-rhamno 20.5 3E+02 0.0065 19.7 5.0 35 85-122 25-59 (102)
390 PF02994 Transposase_22: L1 tr 20.4 2.7E+02 0.0059 24.9 5.8 77 71-148 191-288 (370)
391 TIGR02223 ftsN cell division p 20.2 2.7E+02 0.0059 24.2 5.5 69 71-143 228-297 (298)
392 PF13549 ATP-grasp_5: ATP-gras 20.1 2.6E+02 0.0057 23.0 5.2 52 82-133 33-85 (222)
393 PLN02655 ent-kaurene oxidase 20.1 2.1E+02 0.0046 26.0 5.2 48 74-130 9-59 (466)
394 PRK10162 acetyl esterase; Prov 20.0 3.4E+02 0.0074 23.3 6.2 58 69-132 249-308 (318)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.91 E-value=3.7e-23 Score=160.11 Aligned_cols=86 Identities=27% Similarity=0.414 Sum_probs=81.4
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
...+++|||+|||+.++|++|+++|.+||.|+.|.|+.+..|+++++||||+|++.++|++||+.||++.|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026421 147 SRRKRP 152 (238)
Q Consensus 147 a~~~~~ 152 (238)
++++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 986644
No 2
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3e-21 Score=148.94 Aligned_cols=80 Identities=38% Similarity=0.618 Sum_probs=74.5
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
+..++|||+||+..+++.||+.+|..||+|..|+|..++ .|||||||+++.+|+.|+..|+|..|.|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 457899999999999999999999999999999998764 789999999999999999999999999999999999
Q ss_pred cCCCC
Q 026421 148 RRKRP 152 (238)
Q Consensus 148 ~~~~~ 152 (238)
+.+..
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 86654
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.83 E-value=7.1e-20 Score=166.86 Aligned_cols=83 Identities=33% Similarity=0.472 Sum_probs=77.9
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+..+|||+|||..+++++|+++|.+||+|..|.|+.++.+++++|||||+|.+.++|++||+ |+|..|.|.+|.|++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999998 999999999999998
Q ss_pred ccCC
Q 026421 147 SRRK 150 (238)
Q Consensus 147 a~~~ 150 (238)
++..
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 7644
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.82 E-value=2e-19 Score=157.71 Aligned_cols=85 Identities=29% Similarity=0.454 Sum_probs=78.5
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEEe
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG--RYITVER 146 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g--~~l~V~~ 146 (238)
..++|||.|||..||+++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.||++.|.+ ++|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999998875 7899999
Q ss_pred ccCCCCC
Q 026421 147 SRRKRPR 153 (238)
Q Consensus 147 a~~~~~~ 153 (238)
|+.....
T Consensus 272 a~~~~~~ 278 (346)
T TIGR01659 272 AEEHGKA 278 (346)
T ss_pred CCccccc
Confidence 9866443
No 5
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=5.3e-20 Score=135.21 Aligned_cols=98 Identities=29% Similarity=0.473 Sum_probs=87.0
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+...++||||+||+..++|++|.++|.++|+|..|.|-+|+.+..+.|||||+|.+.++|+.||..|+++.|+.++|.|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 026421 146 RSRRKRPRTPTPGHYLGLKSSRDIGRGDRGR 176 (238)
Q Consensus 146 ~a~~~~~~~~~~~~~~g~~~~~~~grg~~g~ 176 (238)
|.- |.-.++++|+|..|+
T Consensus 112 ~D~-------------GF~eGRQyGRG~sGG 129 (153)
T KOG0121|consen 112 WDA-------------GFVEGRQYGRGKSGG 129 (153)
T ss_pred ccc-------------cchhhhhhcCCCCCC
Confidence 973 334456666665543
No 6
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.81 E-value=2.8e-19 Score=141.46 Aligned_cols=88 Identities=33% Similarity=0.503 Sum_probs=82.9
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.++.+.-++|.|.||...++.++|..+|++||.|.+|.|+.|..|.+++|||||.|....+|+.||++|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 45566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 026421 144 VERSRRKR 151 (238)
Q Consensus 144 V~~a~~~~ 151 (238)
|++|+-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99997543
No 7
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=7.9e-18 Score=139.77 Aligned_cols=103 Identities=27% Similarity=0.387 Sum_probs=93.3
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
..+|-+||||.-|+.+++|.+|+..|..||+|+.|.|+.++.||+++|||||+|+++.++.+|.+..+|.+|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCC
Q 026421 146 RSRRKRPRTPTPGHYLGLKSSRD 168 (238)
Q Consensus 146 ~a~~~~~~~~~~~~~~g~~~~~~ 168 (238)
+-.........|..-+|+-++..
T Consensus 177 vERgRTvkgW~PRRLGGGLGg~r 199 (335)
T KOG0113|consen 177 VERGRTVKGWLPRRLGGGLGGRR 199 (335)
T ss_pred ecccccccccccccccCCcCCcc
Confidence 99888887777766555554444
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=9.2e-19 Score=153.56 Aligned_cols=86 Identities=30% Similarity=0.487 Sum_probs=81.1
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
......++|||+|||+++|+++|+++|++||+|+.|+|+.+..|+++++||||+|.++++|++||+.||++.|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 44556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCC
Q 026421 145 ERSRRK 150 (238)
Q Consensus 145 ~~a~~~ 150 (238)
.++++.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998753
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=2.1e-18 Score=152.05 Aligned_cols=85 Identities=26% Similarity=0.346 Sum_probs=80.2
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
..+.+|||+|||..+++++|+++|++||.|+.|.|+.+..|+.++|||||+|.+.++|.+||+.|||..|+|+.|.|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 33457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 026421 148 RRKRP 152 (238)
Q Consensus 148 ~~~~~ 152 (238)
..+..
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 87754
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=2.8e-18 Score=151.22 Aligned_cols=84 Identities=30% Similarity=0.424 Sum_probs=80.0
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
+.++|||+|||..+++++|+++|.+||+|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|.|+.|.|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 026421 149 RKRP 152 (238)
Q Consensus 149 ~~~~ 152 (238)
+...
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 6653
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.76 E-value=1.2e-17 Score=152.31 Aligned_cols=81 Identities=30% Similarity=0.459 Sum_probs=77.5
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
.++|||+|||..+|+++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.|||..|.|++|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred C
Q 026421 150 K 150 (238)
Q Consensus 150 ~ 150 (238)
.
T Consensus 266 ~ 266 (457)
T TIGR01622 266 S 266 (457)
T ss_pred C
Confidence 3
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.9e-18 Score=138.81 Aligned_cols=82 Identities=35% Similarity=0.493 Sum_probs=79.9
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
..++|-|.||+.+++|++|+++|.+||.|..|.|..+++||.++|||||.|.+.++|++||+.|||+-++...|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026421 149 RK 150 (238)
Q Consensus 149 ~~ 150 (238)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 76
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.76 E-value=6.8e-18 Score=113.97 Aligned_cols=70 Identities=39% Similarity=0.605 Sum_probs=66.9
Q ss_pred EEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
|||+|||.++|+++|+++|.+||.|..+.|+.+ .++..++||||+|++.++|++||+.||+..|+|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6788899999999999999999999999999999885
No 14
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=9.5e-18 Score=124.44 Aligned_cols=83 Identities=28% Similarity=0.484 Sum_probs=79.6
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
-.+..|||.++...+||++|.+.|..||+|++|.|.++..||..+|||+|+|++.++|++||..|||..|.+++|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 026421 148 RRK 150 (238)
Q Consensus 148 ~~~ 150 (238)
..+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 755
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.70 E-value=3.2e-16 Score=144.74 Aligned_cols=77 Identities=36% Similarity=0.453 Sum_probs=71.0
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhc--CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKE--GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~--G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...++|||+||+..+++++|+++|++| |+|+.|.++ ++||||+|++.++|++||+.||+.+|+|+.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346789999999999999999999999 999999876 4599999999999999999999999999999999
Q ss_pred eccCCCC
Q 026421 146 RSRRKRP 152 (238)
Q Consensus 146 ~a~~~~~ 152 (238)
||+++..
T Consensus 303 ~Akp~~~ 309 (578)
T TIGR01648 303 LAKPVDK 309 (578)
T ss_pred EccCCCc
Confidence 9987644
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.69 E-value=2e-16 Score=107.24 Aligned_cols=70 Identities=37% Similarity=0.616 Sum_probs=64.8
Q ss_pred EEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
|||.|||+.+++++|.++|..||.|..|.++.++. +..+++|||+|.++++|++||+.+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 88999999999999999999999999999999874
No 17
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.4e-16 Score=124.35 Aligned_cols=81 Identities=28% Similarity=0.395 Sum_probs=72.3
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
...++|||+|||.+|.+.+|+++|.+||.|.+|.|..... +..||||+|+++-+|+.||..-+|..++|+.|.|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g---~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG---PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC---CCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 3468999999999999999999999999999998865432 3569999999999999999999999999999999998
Q ss_pred cCCC
Q 026421 148 RRKR 151 (238)
Q Consensus 148 ~~~~ 151 (238)
..-.
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 7543
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=5.3e-17 Score=131.02 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=74.4
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
.-++|||++|+|++..++|.++|++||+|++..|+.|+.|+++|||+||+|.+.|+|..|++ -.+..|+|++..|++|-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhh
Confidence 35799999999999999999999999999999999999999999999999999999999999 34568999999999876
Q ss_pred C
Q 026421 149 R 149 (238)
Q Consensus 149 ~ 149 (238)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.67 E-value=5.4e-16 Score=143.14 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=78.0
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
.++|||+|||..+++++|+++|++||.|+.|.|+.+..++.++|||||+|.+.++|+.||+.|||+.|.|+.|.|++|..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 026421 150 KR 151 (238)
Q Consensus 150 ~~ 151 (238)
..
T Consensus 375 ~~ 376 (509)
T TIGR01642 375 GA 376 (509)
T ss_pred CC
Confidence 43
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.67 E-value=4.6e-16 Score=129.26 Aligned_cols=77 Identities=23% Similarity=0.344 Sum_probs=71.4
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
.++|||+||++.+++++|+++|+.||+|+.|.|+.+.. .++||||+|+++++|+.||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998864 36899999999999999996 999999999999999874
Q ss_pred C
Q 026421 150 K 150 (238)
Q Consensus 150 ~ 150 (238)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=7.9e-16 Score=142.45 Aligned_cols=85 Identities=22% Similarity=0.455 Sum_probs=80.0
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
...++|||+||+.++++++|+++|+.||.|+.|.|+.+..+++++|||||+|.+.++|.+||+.||++.|+|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 026421 148 RRKRP 152 (238)
Q Consensus 148 ~~~~~ 152 (238)
.++..
T Consensus 282 i~pP~ 286 (612)
T TIGR01645 282 VTPPD 286 (612)
T ss_pred CCCcc
Confidence 86543
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=6.3e-16 Score=143.12 Aligned_cols=84 Identities=27% Similarity=0.395 Sum_probs=78.8
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
......++|||+||++.+++++|+++|.+||+|..|.|+.++.|++++|||||+|.+.++|++||+.|||..|+|+.|+|
T Consensus 102 ~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV 181 (612)
T TIGR01645 102 QALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 181 (612)
T ss_pred hhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeee
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eecc
Q 026421 145 ERSR 148 (238)
Q Consensus 145 ~~a~ 148 (238)
.+..
T Consensus 182 ~rp~ 185 (612)
T TIGR01645 182 GRPS 185 (612)
T ss_pred cccc
Confidence 8654
No 23
>PLN03213 repressor of silencing 3; Provisional
Probab=99.64 E-value=1e-15 Score=134.88 Aligned_cols=80 Identities=28% Similarity=0.419 Sum_probs=73.6
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCCeeCCeEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGV--EDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~--e~A~~Al~~l~g~~i~g~~l~ 143 (238)
......+|||+||++.|++++|..+|..||.|..|.|+ .+|| +|||||+|.+. +++.+||..|||..|+|..|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 34557899999999999999999999999999999999 5566 99999999987 789999999999999999999
Q ss_pred EEeccC
Q 026421 144 VERSRR 149 (238)
Q Consensus 144 V~~a~~ 149 (238)
|+.|++
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 999985
No 24
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.63 E-value=3.7e-15 Score=137.10 Aligned_cols=79 Identities=32% Similarity=0.537 Sum_probs=73.3
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
++||||++|+..|+|+||..+|+.||+|..|.|+.. ++||||++....+|++||.+|++..|..+.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999998865 78999999999999999999999999999999999987
Q ss_pred CCCCC
Q 026421 150 KRPRT 154 (238)
Q Consensus 150 ~~~~~ 154 (238)
+-.+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65443
No 25
>smart00362 RRM_2 RNA recognition motif.
Probab=99.63 E-value=2.3e-15 Score=100.89 Aligned_cols=72 Identities=44% Similarity=0.626 Sum_probs=67.0
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+|||.|||..+++++|+++|.+||.|..+.++.+. +.+.++|||+|.+.++|++|++.|++..|.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988776 6678999999999999999999999999999998873
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=1.5e-15 Score=141.90 Aligned_cols=80 Identities=34% Similarity=0.453 Sum_probs=76.4
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
.+|||+|||.++||++|.++|.+||+|+.|.|+.+..|++++|||||+|.+.++|++||+.||+..|.|+.|.|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999998643
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.5e-16 Score=125.90 Aligned_cols=85 Identities=34% Similarity=0.520 Sum_probs=81.2
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
.....+|||++|..+|+|.-|...|-.||.|+.|.|++|.++++.++||||+|+..|+|.+||..||..+|.|+.|.|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026421 147 SRRKR 151 (238)
Q Consensus 147 a~~~~ 151 (238)
|+|.+
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 99865
No 28
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.4e-15 Score=127.95 Aligned_cols=85 Identities=33% Similarity=0.507 Sum_probs=76.9
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.+.....+.|+|.|||+...+.||..+|.+||+|.+|+||.+.. -+|||+||+|++.++|++|-++|||..|.|++|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 44455678999999999999999999999999999999998753 3699999999999999999999999999999999
Q ss_pred EEeccCC
Q 026421 144 VERSRRK 150 (238)
Q Consensus 144 V~~a~~~ 150 (238)
|..|+..
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9998753
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=1.9e-15 Score=139.66 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=71.8
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEe
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRYITVER 146 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~-g~~l~V~~ 146 (238)
...++|||+|||.+++|++|.++|++||+|..|.|+.+ .+++++|||||+|.+.++|++||+.||+..|. ++.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 45689999999999999999999999999999999999 88999999999999999999999999998885 66666554
Q ss_pred c
Q 026421 147 S 147 (238)
Q Consensus 147 a 147 (238)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 4
No 30
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.62 E-value=3.1e-15 Score=122.55 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=70.8
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
.+.+|||+||++.+|+++|++||+.||+|..|.|+.+..+ .+||||+|+++++|+.||. |+|..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999988544 5799999999999999997 99999999999998866
Q ss_pred C
Q 026421 149 R 149 (238)
Q Consensus 149 ~ 149 (238)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.62 E-value=9.4e-16 Score=119.35 Aligned_cols=84 Identities=32% Similarity=0.440 Sum_probs=79.7
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+.+...||||+||+..++++.|+++|-+.|+|+.|.|+.+..+.+.+|||||+|.++|+|+-||+.||...|.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q 026421 146 RSRR 149 (238)
Q Consensus 146 ~a~~ 149 (238)
.+..
T Consensus 85 kas~ 88 (203)
T KOG0131|consen 85 KASA 88 (203)
T ss_pred eccc
Confidence 9873
No 32
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=7.3e-17 Score=125.46 Aligned_cols=81 Identities=27% Similarity=0.427 Sum_probs=76.8
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
..+.-|||+|||.++||.||..+|++||+|++|.|+.|+.||+++||||+.|++.-....|+..|||..|.|+.|.|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred c
Q 026421 148 R 148 (238)
Q Consensus 148 ~ 148 (238)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.8e-15 Score=123.21 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=75.2
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
....+|+|||+||+..+||++|.+.|..||.|.+|.|.++ +|||||.|++.|+|..||..||+++|.|+.|+|.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 3456899999999999999999999999999999999988 6899999999999999999999999999999999
Q ss_pred eccCCCC
Q 026421 146 RSRRKRP 152 (238)
Q Consensus 146 ~a~~~~~ 152 (238)
|-+....
T Consensus 234 WGKe~~~ 240 (321)
T KOG0148|consen 234 WGKEGDD 240 (321)
T ss_pred ccccCCC
Confidence 9876543
No 34
>smart00360 RRM RNA recognition motif.
Probab=99.61 E-value=4.6e-15 Score=98.99 Aligned_cols=71 Identities=44% Similarity=0.615 Sum_probs=67.1
Q ss_pred ecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 75 VTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 75 V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
|.|||..+++++|+++|.+||.|..|.|+.+..++.++++|||+|.+.++|++||+.|++..|.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988888899999999999999999999999999999998873
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.61 E-value=4.1e-15 Score=139.07 Aligned_cols=84 Identities=31% Similarity=0.552 Sum_probs=78.9
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
....++|||+||+..+++++|+++|++||.|+.|+|+.+ .++.++|||||+|.+.++|++||+.||+..|+|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345778999999999999999999999999999999998 6789999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026421 147 SRRKR 151 (238)
Q Consensus 147 a~~~~ 151 (238)
|+.+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 98754
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.7e-15 Score=123.30 Aligned_cols=82 Identities=28% Similarity=0.424 Sum_probs=79.1
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
-..|||+-|..+|+-++|++.|.+||+|.+++|+.|..|+++|||+||.|-+.++|+.||+.|||..|..+.|...||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 026421 150 KR 151 (238)
Q Consensus 150 ~~ 151 (238)
|.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 37
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=8.1e-15 Score=104.13 Aligned_cols=82 Identities=23% Similarity=0.363 Sum_probs=74.8
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+...+..|||.|||..+|.+++.++|.+||.|..|.|-..++| +|.|||.|++..+|.+|++.|+|..+.+..|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 4455789999999999999999999999999999999877665 7999999999999999999999999999999998
Q ss_pred eccCC
Q 026421 146 RSRRK 150 (238)
Q Consensus 146 ~a~~~ 150 (238)
+.++.
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 87654
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.58 E-value=2.1e-14 Score=96.67 Aligned_cols=74 Identities=47% Similarity=0.630 Sum_probs=68.7
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
+|+|.|||..+++++|+++|..||.|..+.+..+..+ .+.++|||+|.+.++|+.|++.|++..+++..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999987655 6688999999999999999999999999999999874
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=7.8e-15 Score=127.86 Aligned_cols=82 Identities=32% Similarity=0.429 Sum_probs=76.9
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRYITVE 145 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~-g~~l~V~ 145 (238)
..-++.|||+.||.++.|++|.-+|++.|+|-++.|++|+.+|.++|||||+|.+.++|++||+.||+++|. |+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 356899999999999999999999999999999999999999999999999999999999999999999884 8888887
Q ss_pred ecc
Q 026421 146 RSR 148 (238)
Q Consensus 146 ~a~ 148 (238)
.+.
T Consensus 160 ~Sv 162 (506)
T KOG0117|consen 160 VSV 162 (506)
T ss_pred Eee
Confidence 764
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=1.4e-14 Score=121.21 Aligned_cols=80 Identities=44% Similarity=0.595 Sum_probs=77.3
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
..+|||+|||..+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|..||+.|++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999764
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.56 E-value=2.4e-14 Score=131.53 Aligned_cols=81 Identities=26% Similarity=0.351 Sum_probs=74.1
Q ss_pred CCCCCEEEecCCCC-CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 67 GNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 67 ~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
..++++|||+||++ .+|+++|+++|++||.|..|+|+.++ +|||||+|.+.++|+.||+.||+..|.|++|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998863 6899999999999999999999999999999999
Q ss_pred eccCCCC
Q 026421 146 RSRRKRP 152 (238)
Q Consensus 146 ~a~~~~~ 152 (238)
+++.+..
T Consensus 347 ~s~~~~~ 353 (481)
T TIGR01649 347 PSKQQNV 353 (481)
T ss_pred Ecccccc
Confidence 9876543
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.55 E-value=2.2e-14 Score=131.71 Aligned_cols=77 Identities=21% Similarity=0.323 Sum_probs=70.2
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCeeCCeEEEEEe
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL--NQSVLEGRYITVER 146 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l--~g~~i~g~~l~V~~ 146 (238)
|+.+|||+|||+.+++++|.++|++||+|..|.|+.+ ++||||+|++.++|++||+.| ++..|.|+.|.|+|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999854 579999999999999999864 77899999999999
Q ss_pred ccCCC
Q 026421 147 SRRKR 151 (238)
Q Consensus 147 a~~~~ 151 (238)
++.+.
T Consensus 75 s~~~~ 79 (481)
T TIGR01649 75 STSQE 79 (481)
T ss_pred cCCcc
Confidence 97553
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2e-14 Score=117.73 Aligned_cols=86 Identities=30% Similarity=0.410 Sum_probs=81.0
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
.+..+.|+|.-||..+|++||+.+|...|+|+.|+++.|+.+|++.||+||.|-++++|++||..|||..|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026421 147 SRRKRP 152 (238)
Q Consensus 147 a~~~~~ 152 (238)
|.|...
T Consensus 118 ARPSs~ 123 (360)
T KOG0145|consen 118 ARPSSD 123 (360)
T ss_pred ccCChh
Confidence 987643
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=4.6e-14 Score=115.61 Aligned_cols=82 Identities=29% Similarity=0.354 Sum_probs=78.5
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
.+.+|||-||.+++.|.-|+++|.+||.|..|+|+.|..|++.+||+||++.+-++|..||..|||..|.++.|.|.+..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q 026421 149 RK 150 (238)
Q Consensus 149 ~~ 150 (238)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 54
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.3e-14 Score=126.46 Aligned_cols=76 Identities=32% Similarity=0.390 Sum_probs=71.3
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
-+.|||.||+..||++.|+++|.+||.|+.|+.+.| ||||.|.+.++|.+||+.||+++|+|..|.|.+|+|
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 468999999999999999999999999999998855 999999999999999999999999999999999998
Q ss_pred CCCC
Q 026421 150 KRPR 153 (238)
Q Consensus 150 ~~~~ 153 (238)
..+.
T Consensus 331 ~~k~ 334 (506)
T KOG0117|consen 331 VDKK 334 (506)
T ss_pred hhhh
Confidence 6543
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=8.2e-15 Score=120.39 Aligned_cols=89 Identities=24% Similarity=0.362 Sum_probs=84.3
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
...+++|.|||-.||.+..+.||.++|..||.|+..+|+.|..|+.+|+|+||.|+++..|++||..|||+.|.-+.|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
++..++...
T Consensus 360 QLKRPkdan 368 (371)
T KOG0146|consen 360 QLKRPKDAN 368 (371)
T ss_pred hhcCccccC
Confidence 999888654
No 47
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.53 E-value=1.4e-13 Score=127.05 Aligned_cols=72 Identities=22% Similarity=0.442 Sum_probs=59.9
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhc------------CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKE------------GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~------------G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
..+|||+|||+.+|+++|+++|.+| +.|..|.+ .+.++||||+|.++++|++||+ |||+.|
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 4589999999999999999999976 22333333 2347899999999999999996 999999
Q ss_pred CCeEEEEEecc
Q 026421 138 EGRYITVERSR 148 (238)
Q Consensus 138 ~g~~l~V~~a~ 148 (238)
.|..|+|....
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999997654
No 48
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.53 E-value=2.6e-14 Score=127.63 Aligned_cols=82 Identities=29% Similarity=0.445 Sum_probs=79.2
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
.+|||+|||+++++++|..+|++.|.|..++++.|.+||+++||||++|.+.++|+.|++.||+.++.|.+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 026421 151 RP 152 (238)
Q Consensus 151 ~~ 152 (238)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=5.3e-14 Score=125.35 Aligned_cols=88 Identities=32% Similarity=0.503 Sum_probs=79.1
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-----CC-Cee
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL-----NQ-SVL 137 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l-----~g-~~i 137 (238)
+++.....+|||.|||+++|+++|.++|.+||+|..+.|++++.|+.++|.|||.|.+..+|++||+.. .| ..|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 344556789999999999999999999999999999999999999999999999999999999999966 33 578
Q ss_pred CCeEEEEEeccCCC
Q 026421 138 EGRYITVERSRRKR 151 (238)
Q Consensus 138 ~g~~l~V~~a~~~~ 151 (238)
.|+.|+|..|-+..
T Consensus 366 ~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRK 379 (678)
T ss_pred eccEEeeeeccchH
Confidence 99999999986544
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.6e-14 Score=125.38 Aligned_cols=86 Identities=29% Similarity=0.498 Sum_probs=77.5
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeC--CeEEEE
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS-VLE--GRYITV 144 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~-~i~--g~~l~V 144 (238)
....+|||+.|+..+||.||.++|.+||.|++|.|+.+. .+.++|||||+|.+.|.|..||+.||+. ++. ..+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 446799999999999999999999999999999999985 4789999999999999999999999997 454 468999
Q ss_pred EeccCCCCCC
Q 026421 145 ERSRRKRPRT 154 (238)
Q Consensus 145 ~~a~~~~~~~ 154 (238)
+||.+++.+.
T Consensus 201 kFADtqkdk~ 210 (510)
T KOG0144|consen 201 KFADTQKDKD 210 (510)
T ss_pred EecccCCCch
Confidence 9999887653
No 51
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.50 E-value=3.2e-14 Score=118.09 Aligned_cols=73 Identities=33% Similarity=0.530 Sum_probs=69.4
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
.+|||+|||..+++++|+.+|++||+|++|.|++ .|+||..++...|+.||..|++.+|+|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 4799999999999999999999999999999995 49999999999999999999999999999999999887
Q ss_pred C
Q 026421 151 R 151 (238)
Q Consensus 151 ~ 151 (238)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=6e-14 Score=121.91 Aligned_cols=87 Identities=25% Similarity=0.369 Sum_probs=78.7
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-eC--CeEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV-LE--GRYIT 143 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~-i~--g~~l~ 143 (238)
....-+|||+.||..++|.||+++|++||.|.+|.|++|+.|+.++|||||+|.+.++|.+|+.+|++.+ |- ..+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3456799999999999999999999999999999999999999999999999999999999999998764 43 57899
Q ss_pred EEeccCCCCC
Q 026421 144 VERSRRKRPR 153 (238)
Q Consensus 144 V~~a~~~~~~ 153 (238)
|++|....++
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9999877665
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=9.3e-14 Score=123.81 Aligned_cols=83 Identities=28% Similarity=0.488 Sum_probs=76.0
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
+...|+|.|||+.|.+.+|+.+|+.||.|..|.|+....++. .|||||+|....+|..||+.||+..|+|++|.|.||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl-cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL-CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc-cceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 468999999999999999999999999999999997765554 5999999999999999999999999999999999998
Q ss_pred CCCC
Q 026421 149 RKRP 152 (238)
Q Consensus 149 ~~~~ 152 (238)
++..
T Consensus 195 ~Kd~ 198 (678)
T KOG0127|consen 195 DKDT 198 (678)
T ss_pred cccc
Confidence 7653
No 54
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5e-14 Score=119.73 Aligned_cols=83 Identities=30% Similarity=0.483 Sum_probs=79.3
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
+|.+.|||..|.+-+|.++|+-||+.||+|..|.|+.+..||.+..||||+|++.+.+++|.-+|++..|++..|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCC
Q 026421 148 RRK 150 (238)
Q Consensus 148 ~~~ 150 (238)
+.-
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 643
No 55
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.48 E-value=4.1e-13 Score=116.97 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=73.4
Q ss_pred CCEEEecCCCCCCcHHHHHHHhh-hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFS-KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
...|||.|||+++.|++|+++|. +.|+|+.|+|+.| ..++++|||.|||+++|.+++|++.||.+.++|++|+|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 35699999999999999999995 6789999999988 569999999999999999999999999999999999999875
Q ss_pred CC
Q 026421 149 RK 150 (238)
Q Consensus 149 ~~ 150 (238)
..
T Consensus 123 d~ 124 (608)
T KOG4212|consen 123 DE 124 (608)
T ss_pred ch
Confidence 43
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.47 E-value=2.6e-13 Score=87.96 Aligned_cols=56 Identities=41% Similarity=0.576 Sum_probs=50.9
Q ss_pred HHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 87 LEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 87 L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
|.++|++||+|..|.+..+. .++|||+|.+.++|++|++.||+..|.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997653 479999999999999999999999999999999986
No 57
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.47 E-value=6.7e-13 Score=118.03 Aligned_cols=86 Identities=21% Similarity=0.306 Sum_probs=72.0
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+.....+|||.|||.++++++|+++|..||.|+...|......++..+||||+|++.++++.||+ .+-..|++++|.|+
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVE 362 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEE
Confidence 33445679999999999999999999999999998877654334444899999999999999999 56888999999999
Q ss_pred eccCCCC
Q 026421 146 RSRRKRP 152 (238)
Q Consensus 146 ~a~~~~~ 152 (238)
..++...
T Consensus 363 ek~~~~~ 369 (419)
T KOG0116|consen 363 EKRPGFR 369 (419)
T ss_pred ecccccc
Confidence 9776443
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=99.46 E-value=4.2e-13 Score=91.17 Aligned_cols=61 Identities=30% Similarity=0.485 Sum_probs=55.4
Q ss_pred HHHHHHHhh----hcCCceEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 84 ERDLEKHFS----KEGKVASCF-LVVEPRT--RISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 84 ~~~L~~~f~----~~G~i~~v~-i~~~~~t--g~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
+++|+++|. +||.|..|. |+.++.+ +.++|||||+|.+.++|++||+.|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777766 889999999999999999999999999999999986
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.45 E-value=1.2e-13 Score=114.74 Aligned_cols=98 Identities=29% Similarity=0.467 Sum_probs=83.1
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|+|+||.+.++.+||.+.|++||+|++|+|+++ |+||.|+-.++|..||..||+.+|.|+.|+|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 356889999999999999999999999999999999954 999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 026421 147 SRRKRPRTPTPGHYLGLKSSRDIGRGDRGRY 177 (238)
Q Consensus 147 a~~~~~~~~~~~~~~g~~~~~~~grg~~g~~ 177 (238)
++..-...++.+.. ..++-+|.-|.|
T Consensus 147 stsrlrtapgmgDq-----~~cyrcGkeghw 172 (346)
T KOG0109|consen 147 STSRLRTAPGMGDQ-----SGCYRCGKEGHW 172 (346)
T ss_pred eccccccCCCCCCH-----HHheeccccccc
Confidence 98776655543322 335556665655
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.43 E-value=1.8e-13 Score=122.23 Aligned_cols=79 Identities=34% Similarity=0.468 Sum_probs=75.2
Q ss_pred EEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCCC
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKR 151 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~~ 151 (238)
|||+||..++++++|..+|+.||.|..|.++++.+||.++||+||+|.+.++|.+|+++|||++|.|..|+|.....+.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998766443
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=9.9e-14 Score=118.44 Aligned_cols=78 Identities=29% Similarity=0.448 Sum_probs=75.1
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
-|.|||+.|.+++.|+.|...|..||+|+.|.|.+|+.|++.+|||||||+-+|.|+.|++.|||..++|+.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999999753
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.38 E-value=1.5e-12 Score=104.91 Aligned_cols=83 Identities=25% Similarity=0.423 Sum_probs=74.6
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHH----HhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEK----HFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 141 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~----~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~ 141 (238)
..+++.||||.||+..+..++|+. +|++||+|..|.++. |.+.+|-|||.|.+.+.|-.|+..|+|..|.|+.
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 445666999999999999999887 999999999998873 4667899999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 026421 142 ITVERSRRKR 151 (238)
Q Consensus 142 l~V~~a~~~~ 151 (238)
|.|++|+.+.
T Consensus 82 mriqyA~s~s 91 (221)
T KOG4206|consen 82 MRIQYAKSDS 91 (221)
T ss_pred hheecccCcc
Confidence 9999998754
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.35 E-value=2.1e-12 Score=100.80 Aligned_cols=90 Identities=28% Similarity=0.387 Sum_probs=81.1
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS-CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~-v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
....+.+..|||+||.+.++|..|.++|+.||.|.. -+|+.+..|+.+++|+||.|++.|.+.+||+.||+..+.+.+|
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 455566789999999999999999999999998765 4788899999999999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 026421 143 TVERSRRKRPR 153 (238)
Q Consensus 143 ~V~~a~~~~~~ 153 (238)
.|.++..+...
T Consensus 170 tv~ya~k~~~k 180 (203)
T KOG0131|consen 170 TVSYAFKKDTK 180 (203)
T ss_pred EEEEEEecCCC
Confidence 99999866543
No 64
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=9.6e-12 Score=105.74 Aligned_cols=78 Identities=31% Similarity=0.510 Sum_probs=69.5
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH-hCCCeeCCeEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY-LNQSVLEGRYITV 144 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~-l~g~~i~g~~l~V 144 (238)
....-++|||++|...++|.+|.++|.+||+|..|.++.. +++|||+|.+.++|+.|++. +|...|+|..|+|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3344689999999999999999999999999999998876 56999999999999998875 4667899999999
Q ss_pred EeccC
Q 026421 145 ERSRR 149 (238)
Q Consensus 145 ~~a~~ 149 (238)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99988
No 65
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.28 E-value=1.4e-11 Score=97.97 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=76.6
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhc-CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKE-GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~-G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
......++|..||..+.+.+|..+|.+| |.|..+.+..++.||.++|||||+|++++.|+-|.+.||+..|.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445688999999999999999999999 678888888999999999999999999999999999999999999999998
Q ss_pred eccCC
Q 026421 146 RSRRK 150 (238)
Q Consensus 146 ~a~~~ 150 (238)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87655
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.4e-11 Score=109.11 Aligned_cols=79 Identities=29% Similarity=0.543 Sum_probs=73.8
Q ss_pred EEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCCCC
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRP 152 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~~~ 152 (238)
|||.||++.++..+|.++|+.||+|+.|++..+.. | ++|| ||+|+++++|++||+.|||..+.+++|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999865 3 8999 9999999999999999999999999999998887766
Q ss_pred CC
Q 026421 153 RT 154 (238)
Q Consensus 153 ~~ 154 (238)
+.
T Consensus 156 r~ 157 (369)
T KOG0123|consen 156 RE 157 (369)
T ss_pred hc
Confidence 54
No 67
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.26 E-value=1.3e-11 Score=106.11 Aligned_cols=88 Identities=27% Similarity=0.447 Sum_probs=82.1
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
...+|||++||.++++++|++.|.+||.|..+.|+.|..+...++|+||+|.+++.+.+++. +.-+.|++++|.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 56799999999999999999999999999999999999999999999999999999999988 78889999999999999
Q ss_pred CCCCCCCCC
Q 026421 149 RKRPRTPTP 157 (238)
Q Consensus 149 ~~~~~~~~~ 157 (238)
++....+..
T Consensus 175 pk~~~~~~~ 183 (311)
T KOG4205|consen 175 PKEVMQSTK 183 (311)
T ss_pred chhhccccc
Confidence 998776553
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.24 E-value=2e-11 Score=109.65 Aligned_cols=83 Identities=37% Similarity=0.631 Sum_probs=77.1
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
.+..|||.+|...+...+|+.||++||+|+-.+|+.+..+--.++|+||+|.+.++|.+||+.|+.++|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 36789999999999999999999999999999999988777778999999999999999999999999999999999987
Q ss_pred CCC
Q 026421 149 RKR 151 (238)
Q Consensus 149 ~~~ 151 (238)
...
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 543
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.20 E-value=3.5e-11 Score=105.08 Aligned_cols=75 Identities=28% Similarity=0.325 Sum_probs=68.1
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
...|+|||.|||.++||+.|++-|.+||.|..+.|+ +.++.+| .|.|.++++|+.|+..|++..|+|+.|+|.++
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 457899999999999999999999999999999984 3466665 89999999999999999999999999999874
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=5.9e-11 Score=108.98 Aligned_cols=78 Identities=33% Similarity=0.477 Sum_probs=70.6
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTR---ISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg---~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
++|||.||++.+|.++|..+|..+|.|..|.|...+... .+.|||||+|.++++|+.||+.|+|+.|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 449999999999999999999999999999887665321 34599999999999999999999999999999999999
Q ss_pred c
Q 026421 148 R 148 (238)
Q Consensus 148 ~ 148 (238)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 71
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=99.17 E-value=1e-10 Score=100.16 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=77.8
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCce--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVA--------SCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 138 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~--------~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~ 138 (238)
.....+|||.+|+..+++++|.++|.+++.|. .|+|-++++|+++|+-|.|+|++...|++||+.+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567999999999999999999999999874 4778889999999999999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q 026421 139 GRYITVERSRRKR 151 (238)
Q Consensus 139 g~~l~V~~a~~~~ 151 (238)
+.+|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987665
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.17 E-value=1.3e-10 Score=96.35 Aligned_cols=85 Identities=26% Similarity=0.346 Sum_probs=75.6
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
+.-.++|+|.|||..|+++||+++|.+||.++.+.|..+ .+|.+.|.|-|.|...++|++||+.||++.|+|..|+|+.
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 334488999999999999999999999998888887777 4688899999999999999999999999999999999988
Q ss_pred ccCCCC
Q 026421 147 SRRKRP 152 (238)
Q Consensus 147 a~~~~~ 152 (238)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 765543
No 73
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.17 E-value=3.2e-11 Score=103.68 Aligned_cols=85 Identities=32% Similarity=0.551 Sum_probs=78.0
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
..++|||++|+++++++.|.+.|.+||+|.+|.|+.++.++.+++|+||+|++++.+.++|. ...+.|+++.|.++.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999999999988 56788999999999888
Q ss_pred CCCCCC
Q 026421 149 RKRPRT 154 (238)
Q Consensus 149 ~~~~~~ 154 (238)
+...+.
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 766443
No 74
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.17 E-value=2.8e-10 Score=81.58 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=71.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhc--CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC----CeEEEE
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKE--GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE----GRYITV 144 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~--G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~----g~~l~V 144 (238)
+||+|.|||...|.++|.+++... |....+.|+.|..++.+.|||||.|.+++.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999988654 67888999999999999999999999999999999999999875 567888
Q ss_pred EeccCC
Q 026421 145 ERSRRK 150 (238)
Q Consensus 145 ~~a~~~ 150 (238)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888644
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.3e-10 Score=99.59 Aligned_cols=80 Identities=24% Similarity=0.491 Sum_probs=75.6
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
.+.|||..+.++++++||+.+|+.||+|+.|.+.....++..+||+||||.+......||..||-+.|+|+-|.|-.+-.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999976543
No 76
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.1e-10 Score=96.29 Aligned_cols=85 Identities=25% Similarity=0.401 Sum_probs=75.0
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-C--CeEEEEE
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL-E--GRYITVE 145 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i-~--g~~l~V~ 145 (238)
..++|||+.|...-.|+|+..+|..||+|.+|.++... .+.+||||||.|.+..+|++||..|+|... - ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 46799999999999999999999999999999998764 477899999999999999999999999743 3 3579999
Q ss_pred eccCCCCCC
Q 026421 146 RSRRKRPRT 154 (238)
Q Consensus 146 ~a~~~~~~~ 154 (238)
++...+++.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 998877653
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=9e-11 Score=95.42 Aligned_cols=73 Identities=33% Similarity=0.562 Sum_probs=67.6
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
..|||++||+.+.+.+|+.||..||.|..|.|. .+|+||+|.+..+|..||..||+.+|.+..|.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999999886 569999999999999999999999999999999998855
Q ss_pred C
Q 026421 151 R 151 (238)
Q Consensus 151 ~ 151 (238)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 78
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.3e-10 Score=101.32 Aligned_cols=74 Identities=38% Similarity=0.513 Sum_probs=70.1
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
..|||+ ++||+.+|.++|..+|+|+.|.|+.+. | +.|||||.|.++++|++||+.||...|.|++|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468998 899999999999999999999999998 7 8999999999999999999999999999999999998754
No 79
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=6e-11 Score=108.98 Aligned_cols=83 Identities=24% Similarity=0.383 Sum_probs=76.9
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
...++|+|.|||+..+..+|+++|..||.|..|.|+.....+.++|||||+|-++.+|..|+.+|..+.|.|+.|.++||
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 33689999999999999999999999999999999987666777999999999999999999999999999999999999
Q ss_pred cCC
Q 026421 148 RRK 150 (238)
Q Consensus 148 ~~~ 150 (238)
+..
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 754
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.10 E-value=3e-10 Score=96.73 Aligned_cols=84 Identities=25% Similarity=0.336 Sum_probs=74.5
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS--------CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 138 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~--------v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~ 138 (238)
...++.|||.|||.++|.+++.++|.+||.|.. |+|..+.. |+.+|-|+|.|...+.++.||+.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344678999999999999999999999998754 67777654 899999999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q 026421 139 GRYITVERSRRKR 151 (238)
Q Consensus 139 g~~l~V~~a~~~~ 151 (238)
|++|.|+.|+-+.
T Consensus 210 g~~~rVerAkfq~ 222 (382)
T KOG1548|consen 210 GKKLRVERAKFQM 222 (382)
T ss_pred CcEEEEehhhhhh
Confidence 9999999997543
No 81
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=4.9e-11 Score=95.70 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=72.0
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+.+...||||.||...|+|+-|.++|-+.|+|..|.|..++. ++.+ ||||+|+++..++-|++.|||..|.+..|.|+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 345578999999999999999999999999999999987754 4445 99999999999999999999999999999887
Q ss_pred ecc
Q 026421 146 RSR 148 (238)
Q Consensus 146 ~a~ 148 (238)
+-.
T Consensus 83 ~r~ 85 (267)
T KOG4454|consen 83 LRC 85 (267)
T ss_pred ccc
Confidence 754
No 82
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.06 E-value=4.1e-10 Score=93.44 Aligned_cols=83 Identities=24% Similarity=0.318 Sum_probs=78.2
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+...|||+||...+|.++|+.+|+.||.|..|.|+.++.++.+++||||+|.+.+.++.||. ||+..|.+..|+|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3457899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCC
Q 026421 147 SRRK 150 (238)
Q Consensus 147 a~~~ 150 (238)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8765
No 83
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.03 E-value=1.9e-09 Score=86.88 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=69.6
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---CeEEEE
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPR-TRISRGFAFVTMDGVEDAERCIKYLNQSVLE---GRYITV 144 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~-tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~---g~~l~V 144 (238)
.-.||||.+||.+|..-+|..+|..|--.+.+.|..... ....+-+|||+|.+...|++|+..|||+.|+ +.+|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 357999999999999999999999996665555543322 2334579999999999999999999999986 789999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
++|+...+.
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999865543
No 84
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.98 E-value=4.5e-10 Score=100.70 Aligned_cols=82 Identities=28% Similarity=0.386 Sum_probs=76.2
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
..|||+..|+..+++-+|.+||..+|+|..|.||.|..++.++|.|||+|.+++.+..||. |.|..+.|.+|.|+..+.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHH
Confidence 4689999999999999999999999999999999999999999999999999999999997 999999999999988765
Q ss_pred CCC
Q 026421 150 KRP 152 (238)
Q Consensus 150 ~~~ 152 (238)
.+.
T Consensus 258 ekn 260 (549)
T KOG0147|consen 258 EKN 260 (549)
T ss_pred HHH
Confidence 443
No 85
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.87 E-value=3.8e-09 Score=97.22 Aligned_cols=83 Identities=25% Similarity=0.320 Sum_probs=73.5
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEP---RTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~---~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.+.++.|||+||++.|+++.|...|..||+|..|+|+... +......|+||.|-+..+|++||+.|+|..|.+..|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3457889999999999999999999999999999998654 2234467999999999999999999999999999999
Q ss_pred EEeccC
Q 026421 144 VERSRR 149 (238)
Q Consensus 144 V~~a~~ 149 (238)
+.|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=3e-09 Score=95.69 Aligned_cols=71 Identities=31% Similarity=0.411 Sum_probs=64.4
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
-+..+|+|.|||..|++++|..+|+.||+|..|..-..+ .+.+||+|.++-+|++||+.|++..|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456799999999999999999999999999997665443 68999999999999999999999999999888
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.81 E-value=2.8e-08 Score=86.48 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCEEEecCCCC-CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 70 GNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 70 ~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
++.|.|.||.. .||.+.|..+|..||.|..|+|+.++. --|+|+|.+...|+.||+.|+|+.|.|++|.|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888999976 789999999999999999999998763 479999999999999999999999999999999998
Q ss_pred CCCCCCCC
Q 026421 149 RKRPRTPT 156 (238)
Q Consensus 149 ~~~~~~~~ 156 (238)
-...+.+.
T Consensus 372 H~~vqlp~ 379 (492)
T KOG1190|consen 372 HTNVQLPR 379 (492)
T ss_pred CccccCCC
Confidence 77665554
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.78 E-value=2.2e-08 Score=89.02 Aligned_cols=82 Identities=24% Similarity=0.377 Sum_probs=68.4
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
.......|.+.+|||.+|++||.+||+.++ |..+.+ ...+|+..|-|||||++.|++++||+ ++...+..+-|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~--~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEI--PRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEE--eccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 344566788899999999999999999985 666444 45578889999999999999999999 78888889999998
Q ss_pred eccCCC
Q 026421 146 RSRRKR 151 (238)
Q Consensus 146 ~a~~~~ 151 (238)
.+..++
T Consensus 82 ~~~~~e 87 (510)
T KOG4211|consen 82 TAGGAE 87 (510)
T ss_pred ccCCcc
Confidence 775544
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=1.2e-08 Score=92.32 Aligned_cols=84 Identities=25% Similarity=0.328 Sum_probs=78.6
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
...|||++||..+++.+|++++..||.+....++.+..++.+++|||.+|.++.....|++.|||+.+.+++|.|+.|-.
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCC
Q 026421 150 KRPR 153 (238)
Q Consensus 150 ~~~~ 153 (238)
....
T Consensus 369 g~~~ 372 (500)
T KOG0120|consen 369 GASN 372 (500)
T ss_pred cchh
Confidence 5543
No 90
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.67 E-value=2.6e-08 Score=85.19 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=67.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcC--CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEG--KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G--~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
.++||+||-|++|.+||.+.+...| .|.+++++.+..+|++||||+|...+..++++.|+.|...+|.|+.-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 5799999999999999999998887 6778889999999999999999999999999999999999999886555
No 91
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=2.2e-08 Score=81.54 Aligned_cols=74 Identities=36% Similarity=0.486 Sum_probs=65.5
Q ss_pred CCCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 63 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 63 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
...+....+.|+|.+|+..+.+++|+++|.++|++..+.+. .+++||+|++.++|..||+.|++..|.++.|
T Consensus 92 ~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l 163 (216)
T KOG0106|consen 92 YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRI 163 (216)
T ss_pred cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCcee
Confidence 34455667899999999999999999999999999555442 5699999999999999999999999999999
Q ss_pred EE
Q 026421 143 TV 144 (238)
Q Consensus 143 ~V 144 (238)
+|
T Consensus 164 ~~ 165 (216)
T KOG0106|consen 164 SV 165 (216)
T ss_pred ee
Confidence 99
No 92
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.63 E-value=4.4e-08 Score=80.51 Aligned_cols=83 Identities=22% Similarity=0.352 Sum_probs=75.8
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
.....||.+-|..+++.+.|...|.+|-.....+++.++.|++++||+||.|.+++++..||..|||..++.+.|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 34679999999999999999999999998888999999999999999999999999999999999999999999987655
Q ss_pred cCC
Q 026421 148 RRK 150 (238)
Q Consensus 148 ~~~ 150 (238)
..+
T Consensus 268 ~wk 270 (290)
T KOG0226|consen 268 EWK 270 (290)
T ss_pred hHH
Confidence 433
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.63 E-value=1.5e-07 Score=64.85 Aligned_cols=70 Identities=29% Similarity=0.302 Sum_probs=48.3
Q ss_pred CEEEecCCCCCCcHHHH----HHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 71 NTLYVTGLSTRVTERDL----EKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L----~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+.|+|.|||.+.+...| ++++..|| +|..|. .+.|+|.|.+.+.|..|++.|+|..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 47999999998887664 56666775 666652 3589999999999999999999999999999999
Q ss_pred eccCC
Q 026421 146 RSRRK 150 (238)
Q Consensus 146 ~a~~~ 150 (238)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98543
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.58 E-value=1e-07 Score=69.75 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=45.3
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-----CeeCCeEEEE
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ-----SVLEGRYITV 144 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g-----~~i~g~~l~V 144 (238)
++.|+|.+|+..++.++|+++|.+||.|..|.+... -..|||-|.+.+.|++||+.+.- ..|.+..|++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 367999999999999999999999999999988754 33799999999999999987643 3566766666
Q ss_pred Eec
Q 026421 145 ERS 147 (238)
Q Consensus 145 ~~a 147 (238)
..-
T Consensus 75 ~vL 77 (105)
T PF08777_consen 75 EVL 77 (105)
T ss_dssp E--
T ss_pred EEC
Confidence 553
No 95
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.58 E-value=1.9e-07 Score=83.09 Aligned_cols=79 Identities=27% Similarity=0.356 Sum_probs=65.8
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS-CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~-v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
....+|-|.+||+.||++||.+||+..-.|.. |.|+.+ ..+.+.|-|||+|++.+.|++||. -|...|..+-|.|-.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeeh
Confidence 45678999999999999999999999877766 334444 456688999999999999999999 577888888888866
Q ss_pred cc
Q 026421 147 SR 148 (238)
Q Consensus 147 a~ 148 (238)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 54
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.52 E-value=1e-07 Score=77.04 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=54.4
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 138 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~ 138 (238)
..||||.||..+|+|++|+.+|+.|--...++|... .| ..+|||+|++.+.|..||..|+|..|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 469999999999999999999999976665655432 22 458999999999999999999997763
No 97
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.51 E-value=5e-07 Score=73.26 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=69.0
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRYITVE 145 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~-g~~l~V~ 145 (238)
..++.+||+.|||..++.+.|..+|.+|.-...|.++... .+.|||+|.+...|..|+..|++..|- ..+|.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5678899999999999999999999999989999888653 579999999999999999999999886 8888888
Q ss_pred ecc
Q 026421 146 RSR 148 (238)
Q Consensus 146 ~a~ 148 (238)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 875
No 98
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.51 E-value=6.2e-07 Score=77.50 Aligned_cols=82 Identities=27% Similarity=0.323 Sum_probs=73.1
Q ss_pred CCCCCCCEEEecCCCC-CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 65 ETGNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
....+++.++|-+|.. .++.+.|..+|..||.|+.|++++.+ .|.|+||+.+..+++.||..||+..|.|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 3446789999999987 67788999999999999999999775 57899999999999999999999999999999
Q ss_pred EEeccCCC
Q 026421 144 VERSRRKR 151 (238)
Q Consensus 144 V~~a~~~~ 151 (238)
|..++...
T Consensus 357 v~~SkQ~~ 364 (494)
T KOG1456|consen 357 VCVSKQNF 364 (494)
T ss_pred Eeeccccc
Confidence 99987554
No 99
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.43 E-value=2.3e-07 Score=79.57 Aligned_cols=82 Identities=24% Similarity=0.464 Sum_probs=74.1
Q ss_pred CCCEEE-ecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 69 PGNTLY-VTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 69 ~~~~l~-V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
+..+|| |.+|+..+++++|+.+|..+|.|..|.+..+..++..++||||+|.+...++.||.. +...|.+.+|.|.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 999999999999999999999999999999999999999999999999999999986 788999999999988
Q ss_pred cCCC
Q 026421 148 RRKR 151 (238)
Q Consensus 148 ~~~~ 151 (238)
.+..
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 7553
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.38 E-value=1.9e-06 Score=74.59 Aligned_cols=83 Identities=25% Similarity=0.259 Sum_probs=67.8
Q ss_pred CCCCCCCCEEEecCCC--CCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC--C
Q 026421 64 TETGNPGNTLYVTGLS--TRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE--G 139 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp--~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~--g 139 (238)
.+...++..|.+.=|. ..||.+-|..++...|+|..|.|+.. + --.|+|||++.+.|++|.+.|||..|. -
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccc
Confidence 4445566666665554 47899999999999999999988865 2 236999999999999999999999875 4
Q ss_pred eEEEEEeccCCC
Q 026421 140 RYITVERSRRKR 151 (238)
Q Consensus 140 ~~l~V~~a~~~~ 151 (238)
.+|+|++|++.+
T Consensus 189 CTLKIeyAkP~r 200 (494)
T KOG1456|consen 189 CTLKIEYAKPTR 200 (494)
T ss_pred eeEEEEecCcce
Confidence 699999999865
No 101
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.1e-06 Score=79.48 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=65.4
Q ss_pred CCCEEEecCCCCCCc------HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeE
Q 026421 69 PGNTLYVTGLSTRVT------ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRY 141 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t------~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~-g~~ 141 (238)
-.+.|+|.|+|.--. ..-|..+|+++|+|+.+.++.+.++| .+||+|++|+++.+|+.|++.|||+.|+ +++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 357899999997221 23466789999999999999887766 8999999999999999999999999885 778
Q ss_pred EEEEecc
Q 026421 142 ITVERSR 148 (238)
Q Consensus 142 l~V~~a~ 148 (238)
+.|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 8776544
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.31 E-value=1.4e-06 Score=74.46 Aligned_cols=81 Identities=26% Similarity=0.492 Sum_probs=63.6
Q ss_pred CCEEEecCCCCCCcHHH----H--HHHhhhcCCceEEEEeecCCCC-CcceE--EEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 70 GNTLYVTGLSTRVTERD----L--EKHFSKEGKVASCFLVVEPRTR-ISRGF--AFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~----L--~~~f~~~G~i~~v~i~~~~~tg-~~~g~--afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
..-|||-+|++.+..++ | .++|.+||+|..|.|....... ...+. .||+|.+.|+|..||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999877666 3 5789999999998776543111 11222 39999999999999999999999999
Q ss_pred EEEEEeccCC
Q 026421 141 YITVERSRRK 150 (238)
Q Consensus 141 ~l~V~~a~~~ 150 (238)
.|++.+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987653
No 103
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.29 E-value=1e-06 Score=77.31 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=60.4
Q ss_pred CCCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeec---CCC--CC--------cceEEEEEeCCHHHHHHHH
Q 026421 63 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVE---PRT--RI--------SRGFAFVTMDGVEDAERCI 129 (238)
Q Consensus 63 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~---~~t--g~--------~~g~afV~f~~~e~A~~Al 129 (238)
......++.+|.+.|||.+-.-+.|.+||..||.|+.|.|+.. .++ +. .+-+|||+|+..+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3445568899999999999888999999999999999999865 222 11 1457999999999999999
Q ss_pred HHhCCCe
Q 026421 130 KYLNQSV 136 (238)
Q Consensus 130 ~~l~g~~ 136 (238)
+.|+...
T Consensus 304 e~~~~e~ 310 (484)
T KOG1855|consen 304 ELLNPEQ 310 (484)
T ss_pred Hhhchhh
Confidence 9886543
No 104
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.28 E-value=2.3e-06 Score=79.22 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=67.8
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
.|-|.|+|++++.+||.+||..|-.+-.-.++.-.+.|+..|-|.|.|++.++|..|...|++..|..++|.|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 788999999999999999999998776665666667799999999999999999999999999999999998865
No 105
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.21 E-value=3.2e-06 Score=53.89 Aligned_cols=52 Identities=17% Similarity=0.443 Sum_probs=42.6
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 129 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al 129 (238)
+.|-|.++++...+. |..+|..||+|+.+.+... ..++||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 578899999876655 4558889999999888622 459999999999999996
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.16 E-value=2.1e-05 Score=67.50 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=63.3
Q ss_pred CCCEEEecCCCC----CCc-------HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 69 PGNTLYVTGLST----RVT-------ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 69 ~~~~l~V~nLp~----~~t-------~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
..++|.|.||=. ..+ +++|.+-+.+||.|..|.|.-.. +.|.+.|.|.+.++|..||+.|+|..|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCeee
Confidence 367888988843 223 35566778999999999887443 478999999999999999999999999
Q ss_pred CCeEEEEEeccCC
Q 026421 138 EGRYITVERSRRK 150 (238)
Q Consensus 138 ~g~~l~V~~a~~~ 150 (238)
.|++|...+...+
T Consensus 340 dgRql~A~i~DG~ 352 (382)
T KOG1548|consen 340 DGRQLTASIWDGK 352 (382)
T ss_pred cceEEEEEEeCCc
Confidence 9999999886544
No 107
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.14 E-value=9.8e-06 Score=58.50 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=52.9
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecC-------CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEP-------RTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR- 140 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~-------~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~- 140 (238)
..+.|.|.++|+. ....|.+.|++||.|++..-+... .......+..|+|.++.+|++||. .||..|.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3567899999988 556678899999999877411000 001124699999999999999999 899999875
Q ss_pred EEEEEecc
Q 026421 141 YITVERSR 148 (238)
Q Consensus 141 ~l~V~~a~ 148 (238)
.|-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 55577764
No 108
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=98.13 E-value=1.3e-05 Score=61.36 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=53.3
Q ss_pred CCCCCEEEecCCC-----C-CCcH---HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 67 GNPGNTLYVTGLS-----T-RVTE---RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 67 ~~~~~~l~V~nLp-----~-~~t~---~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
.++..||.|.=+. . ...+ .+|.+.|..||+|.-|.++.+ .-+|+|.+-+.|.+||. |+|.+|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 4566777776554 1 2222 367788889999988888743 58999999999999999 999999
Q ss_pred CCeEEEEEeccCCCC
Q 026421 138 EGRYITVERSRRKRP 152 (238)
Q Consensus 138 ~g~~l~V~~a~~~~~ 152 (238)
+|+.|+|.+..+.+.
T Consensus 95 ~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 95 NGRTLKIRLKTPDWL 109 (146)
T ss_dssp TTEEEEEEE------
T ss_pred CCEEEEEEeCCccHH
Confidence 999999999887664
No 109
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.12 E-value=2.4e-05 Score=61.86 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=60.4
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC--CeEEEEEe
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE--GRYITVER 146 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~--g~~l~V~~ 146 (238)
....|+|.+||...+|+||++++.+.|.|+...+..| +++.|+|...|+++-||.+|+.+.+. |..+.|..
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 3568999999999999999999999999999988876 48999999999999999999887664 44444433
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=1.2e-05 Score=72.21 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=63.3
Q ss_pred CCCCCCCCCEEEecCCCCCCcHHHHHHHhh-hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 63 RTETGNPGNTLYVTGLSTRVTERDLEKHFS-KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 63 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
.....++..||||++||--++.++|..||. .||.|+.+-|=+|++-+.++|-|=|+|.+..+-.+||+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 355678899999999999999999999998 89999999999998889999999999999999999998
No 111
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.04 E-value=2.8e-06 Score=70.09 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=60.4
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCC--------CCcc----eEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRT--------RISR----GFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~t--------g~~~----g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
.-.|||.+||+.+....|.+||.+||+|-.|.|.....+ +... --++|+|.+...|..+.+.||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 358999999999999999999999999999988765443 2122 2368999999999999999999999
Q ss_pred CCeE
Q 026421 138 EGRY 141 (238)
Q Consensus 138 ~g~~ 141 (238)
.|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9864
No 112
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.04 E-value=1.1e-05 Score=70.57 Aligned_cols=78 Identities=24% Similarity=0.384 Sum_probs=64.1
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-eEEEEEe
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG-RYITVER 146 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g-~~l~V~~ 146 (238)
+++.+|++.|||..++|++|+++|.+-|-++....... +.+.+|++.++++|+|..|+..|+.+.+.. ..|.|.+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~----kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ----KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC----CCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 56789999999999999999999999886544433222 225699999999999999999999998874 5899999
Q ss_pred ccC
Q 026421 147 SRR 149 (238)
Q Consensus 147 a~~ 149 (238)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 864
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.04 E-value=1.4e-05 Score=72.77 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=51.0
Q ss_pred HHHHhhhcCCceEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 87 LEKHFSKEGKVASCFLVVEP---RTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 87 L~~~f~~~G~i~~v~i~~~~---~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
|+..+.+||.|..|.|.... +..-..|..||+|++.++|+.|++.|+|.+|.+++|.+.|-.
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 34456789999999988762 223346789999999999999999999999999999998864
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.02 E-value=7.9e-06 Score=71.03 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=66.8
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCC-ceE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGK-VAS--CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~-i~~--v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+|-+.+||+..+.++|.+||..|.. |.. |.|+.+. .|.+.|-|||+|.+.|.|.+|+...+++....+-|.|-
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 3668999999999999999999999974 433 6777764 47788999999999999999999888888888888886
Q ss_pred ecc
Q 026421 146 RSR 148 (238)
Q Consensus 146 ~a~ 148 (238)
.+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 654
No 115
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.96 E-value=1.1e-05 Score=70.26 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=60.4
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPR---TRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~---tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..|.|.||.+.+|.++|+.+|...|+|.++.|+.+.. .....-.|||.|.+...+..|.. |.+++|-+..|.|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 3899999999999999999999999999998875332 22334589999999999998887 777777666666544
No 116
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.91 E-value=1e-05 Score=73.82 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=64.6
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhh-hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee---CCeE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFS-KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL---EGRY 141 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i---~g~~ 141 (238)
...+++.|||.||-.-+|.-+|+++|. .+|.|+.++| |+ .+..|||.|.+.++|.+.+.+|||..| +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 345688999999999999999999998 5566766633 32 366899999999999999999999876 5788
Q ss_pred EEEEeccC
Q 026421 142 ITVERSRR 149 (238)
Q Consensus 142 l~V~~a~~ 149 (238)
|.|.|+..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 99988764
No 117
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.84 E-value=8.3e-06 Score=67.41 Aligned_cols=64 Identities=25% Similarity=0.258 Sum_probs=51.4
Q ss_pred HHHHHHhh-hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 85 RDLEKHFS-KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 85 ~~L~~~f~-~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
++|...|+ +||+|+++.|..+.. -...|-+||.|...++|++|++.||+-.|.|++|.+++..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 34444555 899999987765432 23467899999999999999999999999999999988653
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=5.7e-05 Score=68.05 Aligned_cols=62 Identities=16% Similarity=0.319 Sum_probs=48.2
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCC---CCCcce---EEEEEeCCHHHHHHHHHHh
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPR---TRISRG---FAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~---tg~~~g---~afV~f~~~e~A~~Al~~l 132 (238)
..+|||++||++++|++|...|..||.|. |.+....+ --.++| |+|+.|+++..+++.|.++
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 67999999999999999999999999864 44442111 123456 9999999999888877644
No 119
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.69 E-value=0.00012 Score=61.64 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=52.2
Q ss_pred HHHHHHHhhhcCCceEEEEeecCCCCCcc-eEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 84 ERDLEKHFSKEGKVASCFLVVEPRTRISR-GFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 84 ~~~L~~~f~~~G~i~~v~i~~~~~tg~~~-g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
++++++.+.+||+|..|.|+..+..-... --.||+|+..++|.+|+-.|||..|+|+.|...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 35677889999999999887664322212 247999999999999999999999999999987754
No 120
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.65 E-value=0.00033 Score=45.87 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhc---CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKE---GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~---G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
..+|+|.+|. +++.++|+.+|..| .....|.++.|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3589999995 57888999999998 245688888774 6889999999999999865
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.56 E-value=9.4e-05 Score=70.57 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=68.9
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG--RYIT 143 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g--~~l~ 143 (238)
...+++.|+|++|..++....|..+|..||.|..|.+-.. .-||+|.|++...|++|++.|-+..|.+ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 3445789999999999999999999999999999877433 4599999999999999999999999974 6788
Q ss_pred EEeccCCC
Q 026421 144 VERSRRKR 151 (238)
Q Consensus 144 V~~a~~~~ 151 (238)
|.+|.+..
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 98887543
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.54 E-value=6.6e-05 Score=69.83 Aligned_cols=83 Identities=19% Similarity=0.132 Sum_probs=67.4
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
.+...+.+|||..||..+++.++.++|...-.|++..++..--+++..+.|||+|..++++.+|+..-+.+.+..+.|.|
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 45566889999999999999999999999888888544444456777889999999999988888866677777788888
Q ss_pred Eec
Q 026421 145 ERS 147 (238)
Q Consensus 145 ~~a 147 (238)
.-.
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 543
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.46 E-value=9.9e-05 Score=65.10 Aligned_cols=76 Identities=34% Similarity=0.459 Sum_probs=60.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeCCeEEEEEeccC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS-VLEGRYITVERSRR 149 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~-~i~g~~l~V~~a~~ 149 (238)
.+|||+||.+.++..+|..+|...-.-..-.++.. .+||||.+.+...|.+|++.|++. ++.|+.+.|...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 47899999999999999999976532222222222 479999999999999999999986 68899999988876
Q ss_pred CCC
Q 026421 150 KRP 152 (238)
Q Consensus 150 ~~~ 152 (238)
++.
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 653
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.39 E-value=8.6e-05 Score=70.46 Aligned_cols=80 Identities=23% Similarity=0.180 Sum_probs=70.7
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
...|+|.|+|+..|.++|+.+|.++|.++.+.++..+ .|+++|.|||.|.+..+|..++..++...+.-..+.|+.+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4679999999999999999999999999999877664 588999999999999999999998888888888888888665
Q ss_pred C
Q 026421 150 K 150 (238)
Q Consensus 150 ~ 150 (238)
.
T Consensus 815 ~ 815 (881)
T KOG0128|consen 815 E 815 (881)
T ss_pred c
Confidence 3
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.39 E-value=9.3e-06 Score=76.81 Aligned_cols=72 Identities=22% Similarity=0.396 Sum_probs=61.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
.++||.||+..+.+.+|...|..++.|..|.|.....++..+|+|||+|..++.|.+||...+.+.+....|
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v 739 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISV 739 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhh
Confidence 579999999999999999999999998888877677788899999999999999999998665555543333
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.34 E-value=0.00063 Score=59.46 Aligned_cols=72 Identities=22% Similarity=0.294 Sum_probs=52.2
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcC----CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEG----KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G----~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
-.|-+.+||+++++.+|.+||..-- .++.|.++. ..+|+..|-|||.|..+++|+.||.+ |...|+-+-|.|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 3566689999999999999996432 334444443 34678889999999999999999983 444555444444
No 127
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.00041 Score=63.17 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=57.7
Q ss_pred CEEEecCCCCCCcHHHHHHHhh-hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC----CeEEEEE
Q 026421 71 NTLYVTGLSTRVTERDLEKHFS-KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE----GRYITVE 145 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~----g~~l~V~ 145 (238)
+++.|.|++...|...|.+..+ ..|.-..+.++.|-.+.+..|||||.|.+++++..+.+++||+.+. .+...|.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 4555555555555444433322 2456667888888888888999999999999999999999998653 4566777
Q ss_pred eccCCC
Q 026421 146 RSRRKR 151 (238)
Q Consensus 146 ~a~~~~ 151 (238)
||.-+.
T Consensus 469 YArIQG 474 (549)
T KOG4660|consen 469 YARIQG 474 (549)
T ss_pred hhhhhc
Confidence 776443
No 128
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.22 E-value=0.00067 Score=54.23 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=51.4
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhh-cCCc---eEEEEeecCCC-C-CcceEEEEEeCCHHHHHHHHHHhCCCeeCC--
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSK-EGKV---ASCFLVVEPRT-R-ISRGFAFVTMDGVEDAERCIKYLNQSVLEG-- 139 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~-~G~i---~~v~i~~~~~t-g-~~~g~afV~f~~~e~A~~Al~~l~g~~i~g-- 139 (238)
....+|.|.+||+.+|++++.+.+.. ++.. ..+........ . ....-|||.|.+.+++...+..++|+.|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44679999999999999999987776 5544 33332222211 1 123569999999999999999999987642
Q ss_pred ---eEEEEEeccC
Q 026421 140 ---RYITVERSRR 149 (238)
Q Consensus 140 ---~~l~V~~a~~ 149 (238)
....|++|--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3556777754
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.19 E-value=8.3e-05 Score=70.93 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=65.0
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
.+.|||++||+..+++.+|..+|..+|.|..|.|..... +.-..||||.|.+...+..|+..|.+..|..-.+.+.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 368999999999999999999999999999998876532 2224599999999999999998898887765556665553
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=97.12 E-value=0.00019 Score=61.67 Aligned_cols=81 Identities=25% Similarity=0.408 Sum_probs=62.9
Q ss_pred CEEEecCCCCCCcHHHHH---HHhhhcCCceEEEEeecCC--CC-CcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 71 NTLYVTGLSTRVTERDLE---KHFSKEGKVASCFLVVEPR--TR-ISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~---~~f~~~G~i~~v~i~~~~~--tg-~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
.-+||.+|+..+..+++. +.|.+||.|..|.+..+.- .. ....-++|+|+..++|..||...+|+.++++.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 567888999876655553 4789999999998877652 11 11223899999999999999999999999999888
Q ss_pred EeccCCC
Q 026421 145 ERSRRKR 151 (238)
Q Consensus 145 ~~a~~~~ 151 (238)
.+...+-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8877654
No 131
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.08 E-value=0.0033 Score=47.89 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=55.5
Q ss_pred CCCCCEEEecCCCCCCc----HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 67 GNPGNTLYVTGLSTRVT----ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t----~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
.++-.||.|.=|..++. ...|...++.||+|..|.++- +.-|.|+|++...|-+|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 34556788866555443 334556778999999998863 45899999999999999998765 6667788
Q ss_pred EEEecc
Q 026421 143 TVERSR 148 (238)
Q Consensus 143 ~V~~a~ 148 (238)
.+.|-+
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888754
No 132
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.02 E-value=0.0073 Score=44.41 Aligned_cols=67 Identities=7% Similarity=0.002 Sum_probs=48.1
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 139 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g 139 (238)
..+.|..+|..++.++|..+.+.+- .|..+.|+.+... .+-.++|.|.+.+.|....+.+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444555566666766666664 5677888876432 35578999999999999999999997763
No 133
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.99 E-value=0.0026 Score=44.02 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=41.3
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
..++|. +|..+...||.++|..||.|. |.++.+ .-|||.+...+.|..|+..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 455555 999999999999999999875 455544 2799999999999999998764
No 134
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.96 E-value=0.004 Score=42.36 Aligned_cols=67 Identities=27% Similarity=0.464 Sum_probs=40.2
Q ss_pred EEEec-CCCCCCcHHHHHHHhhhcCC-----ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 72 TLYVT-GLSTRVTERDLEKHFSKEGK-----VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 72 ~l~V~-nLp~~~t~~~L~~~f~~~G~-----i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+|||. +--..++..+|..+|...+. |-.|.|.. .|+||+... +.|+.+|+.|++..+.|++|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45652 22347889999999887743 55666653 399999875 57888999999999999999998
Q ss_pred ec
Q 026421 146 RS 147 (238)
Q Consensus 146 ~a 147 (238)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.90 E-value=0.00053 Score=61.37 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=60.6
Q ss_pred CCCEEEecCCCCCC-cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 69 PGNTLYVTGLSTRV-TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 69 ~~~~l~V~nLp~~~-t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
..+.|-|.-+|..+ +.++|..+|.+||+|..|.|-.. --.|.|+|.+..+|-.|.. .++..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34566666666643 67899999999999999988544 2379999999999977776 7899999999999998
Q ss_pred cC
Q 026421 148 RR 149 (238)
Q Consensus 148 ~~ 149 (238)
++
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 76
No 136
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.0043 Score=52.72 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=53.9
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE-EEEEec
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY-ITVERS 147 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~-l~V~~a 147 (238)
.+-|.|.++|+.. ...|..+|.+||+|++.....+ -.|-+|.|.+..+|++||. .||+.|++.. |-|...
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 5677788888753 4567889999999988765522 3599999999999999999 7999888754 445543
No 137
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.80 E-value=0.0016 Score=54.05 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=59.8
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eeCCeEEEEEe
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS----VLEGRYITVER 146 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~----~i~g~~l~V~~ 146 (238)
..|+|.||...++.+.|.+.|..||+|....++.|. .++..+-++|+|...-.|.+|+..+.-. .+.+.++.|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 789999999999999999999999999887666664 4666778999999999999999866322 23344554444
Q ss_pred c
Q 026421 147 S 147 (238)
Q Consensus 147 a 147 (238)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 138
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.66 E-value=0.0027 Score=57.99 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=54.3
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhh--cCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEEE
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSK--EGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ--SVLEGRYITV 144 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~--~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g--~~i~g~~l~V 144 (238)
.-|.|+|.-||..+-+++|+.||.. |-+++.|.+..+. -=||+|++.++|+.|.+.|.- ++|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3467788999999999999999964 6688888887553 359999999999999887643 3566666554
Q ss_pred E
Q 026421 145 E 145 (238)
Q Consensus 145 ~ 145 (238)
.
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 139
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.61 E-value=0.064 Score=51.28 Aligned_cols=71 Identities=8% Similarity=0.157 Sum_probs=51.7
Q ss_pred CEEEec-CCCCCCcHHHHHHHhhhcCCc-----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 71 NTLYVT-GLSTRVTERDLEKHFSKEGKV-----ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 71 ~~l~V~-nLp~~~t~~~L~~~f~~~G~i-----~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
..+||. +-...++..+|..++..-+.| -.|.|.. .|.||+... +.|...|+.|++..|.|+.|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 345542 223478888998888766544 4456653 389999864 5688889999999999999999
Q ss_pred EeccCC
Q 026421 145 ERSRRK 150 (238)
Q Consensus 145 ~~a~~~ 150 (238)
+.+...
T Consensus 558 ~~~~~~ 563 (629)
T PRK11634 558 QLLGDA 563 (629)
T ss_pred EECCCC
Confidence 998633
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.53 E-value=0.0014 Score=60.93 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=63.2
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+.++..+|||+||...+..+-++.++..||.|..+..+. |+|.+|..+..+..|+..|+-..++++.|.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345678999999999999999999999999998876642 99999999999999999999999998887776
Q ss_pred e
Q 026421 146 R 146 (238)
Q Consensus 146 ~ 146 (238)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 5
No 141
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.53 E-value=0.0075 Score=48.49 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=45.7
Q ss_pred cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCeEEEEEeccCC
Q 026421 83 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN--QSVLEGRYITVERSRRK 150 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~--g~~i~g~~l~V~~a~~~ 150 (238)
..+.|+++|..|+.+..+.++.. -+=..|.|.+.+.|.+|...|+ +..|.|..|+|.+++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999888776643 2358999999999999999999 89999999999998543
No 142
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.32 E-value=0.017 Score=51.75 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=58.3
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 139 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g 139 (238)
++.|+|-.+|..++..||..|+..|- .|..|.|+.+.... +=.++|.|.+.++|..+.+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999998775 68899999864322 3457999999999999999999998864
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.09 E-value=0.0029 Score=54.44 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=65.6
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
..+++||+++.+.+.+.++..+|..+|.+..+.+........++++++|.|+..+.+..||+......+.+..+...+.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999988888777777778889999999999999999999544446666555554443
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.03 E-value=0.0052 Score=58.77 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=62.1
Q ss_pred EEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee--CCeEEEEEeccCC
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL--EGRYITVERSRRK 150 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i--~g~~l~V~~a~~~ 150 (238)
.++.|.+...+-.-|..+|.+||.|..++.+.+- ..|.|+|.+.+.|..|+++|+|+++ .|-+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3344445556777889999999999999988773 4899999999999999999999864 5888999999876
Q ss_pred CCCCC
Q 026421 151 RPRTP 155 (238)
Q Consensus 151 ~~~~~ 155 (238)
..-.+
T Consensus 375 ~~~ep 379 (1007)
T KOG4574|consen 375 PMYEP 379 (1007)
T ss_pred ccccC
Confidence 54433
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.32 E-value=0.1 Score=34.61 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=43.5
Q ss_pred CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 81 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 81 ~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
.++.++|+..|..|.-. .|+.++ | | -||.|.+.++|++|....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 67889999999999742 233332 2 2 489999999999999999999988887765
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.15 E-value=0.0011 Score=58.67 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=65.9
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEee-cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVV-EPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~-~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
..+|-|.|||+...|+.|..++.+||.|..|..+. +.+ .-..-|+|.+.+.+..||.+|++..|....++|.|--
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 45788999999999999999999999999987642 222 2345678999999999999999999999999998865
Q ss_pred CCCCC
Q 026421 149 RKRPR 153 (238)
Q Consensus 149 ~~~~~ 153 (238)
.....
T Consensus 156 deq~~ 160 (584)
T KOG2193|consen 156 DEQNA 160 (584)
T ss_pred hhhhh
Confidence 44433
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.95 E-value=0.0035 Score=55.06 Aligned_cols=76 Identities=9% Similarity=0.091 Sum_probs=59.6
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
.||+|++|+..+...+|.++|..+|+|....+..... ..+|.|+|........||. ++|.++.-+...+...+|.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 6899999999999999999999999998877654332 4578899998888888988 7888777555555554443
Q ss_pred C
Q 026421 151 R 151 (238)
Q Consensus 151 ~ 151 (238)
.
T Consensus 227 k 227 (479)
T KOG4676|consen 227 K 227 (479)
T ss_pred c
Confidence 3
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=0.2 Score=46.49 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=59.4
Q ss_pred CCCCCEEEecCCCC-CCcHHHHHHHhhhc----CCceEEEEeecC----------CCCC---------------------
Q 026421 67 GNPGNTLYVTGLST-RVTERDLEKHFSKE----GKVASCFLVVEP----------RTRI--------------------- 110 (238)
Q Consensus 67 ~~~~~~l~V~nLp~-~~t~~~L~~~f~~~----G~i~~v~i~~~~----------~tg~--------------------- 110 (238)
...+..|-|.||.| .|...+|.-+|..| |.|..|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999999 68889999999877 588888774311 1111
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 111 ----------------SRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 111 ----------------~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
-.=||.|+|.+.+.|.+..+.++|+.|....+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 1237999999999999999999999987544443
No 149
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=93.67 E-value=0.14 Score=34.16 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=47.5
Q ss_pred HHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 85 RDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 85 ~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
++|.+.|...| +|..|.-+....+..+....||+++...+... .++=..|.++.|+|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 56888888888 78888888777777778889999877655333 35556788999999987544
No 150
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=93.15 E-value=0.087 Score=41.77 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=56.6
Q ss_pred CCCCEEEecCCCCCCcH-----HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-E
Q 026421 68 NPGNTLYVTGLSTRVTE-----RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR-Y 141 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~-----~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~-~ 141 (238)
+-.++|++.+|+..+-. ...+.+|.+|.+...+.++.. .+..-|.|.+++.|..|..+++...|.++ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 34567888888875432 234566777766665555533 45678899999999999999999999988 8
Q ss_pred EEEEeccCCC
Q 026421 142 ITVERSRRKR 151 (238)
Q Consensus 142 l~V~~a~~~~ 151 (238)
++.-+|++..
T Consensus 82 ~k~yfaQ~~~ 91 (193)
T KOG4019|consen 82 LKLYFAQPGH 91 (193)
T ss_pred EEEEEccCCC
Confidence 8888877543
No 151
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.74 E-value=0.35 Score=42.94 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=46.8
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
-...|-|-++|.....+||..+|+.|+ .-..|+++.+. .||..|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 457889999999999999999999996 44567777653 89999999999999998
No 152
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=92.69 E-value=0.21 Score=33.27 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=47.6
Q ss_pred HHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 85 RDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 85 ~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
++|++.|...| ++..|..+....+..+...-||+.....+... .|+=+.|+++.|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888899998 78888888888877788888999876544333 4555678899999987643
No 153
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=91.84 E-value=1.3 Score=35.32 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.3
Q ss_pred EEEEeC
Q 026421 115 AFVTMD 120 (238)
Q Consensus 115 afV~f~ 120 (238)
+|..|.
T Consensus 134 Gf~gF~ 139 (180)
T PF08648_consen 134 GFGGFG 139 (180)
T ss_pred cccccc
Confidence 333333
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=90.22 E-value=0.46 Score=35.25 Aligned_cols=57 Identities=11% Similarity=0.161 Sum_probs=30.6
Q ss_pred CEEEecCCCCC---------CcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHH
Q 026421 71 NTLYVTGLSTR---------VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG-VEDAERCIK 130 (238)
Q Consensus 71 ~~l~V~nLp~~---------~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~-~e~A~~Al~ 130 (238)
-+++|.|++.. ++.++|++.|..|..++ |..+.+.. -..++|+|+|.. ...-..|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 36778888653 35688999999998875 44555443 357899999975 444555555
No 155
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=89.69 E-value=0.15 Score=43.22 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=28.2
Q ss_pred CCCEEEecCCCCC------------CcHHHHHHHhhhcCCceEEEEee
Q 026421 69 PGNTLYVTGLSTR------------VTERDLEKHFSKEGKVASCFLVV 104 (238)
Q Consensus 69 ~~~~l~V~nLp~~------------~t~~~L~~~f~~~G~i~~v~i~~ 104 (238)
-.-|||+.+||.. .++.-|...|..||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3458888888852 35677999999999999988764
No 156
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=89.59 E-value=1 Score=38.40 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=36.8
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCc-eEEEEeecCCCCCcceEEEEEeCCHH
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKV-ASCFLVVEPRTRISRGFAFVTMDGVE 123 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i-~~v~i~~~~~tg~~~g~afV~f~~~e 123 (238)
..+-|+|+||+.++...||+..+.+.+.+ ..|.+.- +.+-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCcc
Confidence 35679999999999999999999888743 3343321 2567999997653
No 157
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=88.10 E-value=0.56 Score=41.49 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=50.0
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRT--RISRGFAFVTMDGVEDAERCIKYLNQSVLE 138 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~t--g~~~g~afV~f~~~e~A~~Al~~l~g~~i~ 138 (238)
.-..|.|.+||+.+++++|.+.+..|- .|....+...... ..-.+.|||.|...++.......++|++|.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 346788999999999999998888764 2333333321111 112467899999999988888888988653
No 158
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=88.08 E-value=1.6 Score=39.04 Aligned_cols=39 Identities=38% Similarity=0.520 Sum_probs=30.9
Q ss_pred CCCCCCCCEEEecCCCC-CCcHHHHHHHhhhc----CCceEEEE
Q 026421 64 TETGNPGNTLYVTGLST-RVTERDLEKHFSKE----GKVASCFL 102 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~----G~i~~v~i 102 (238)
++..+++..|-|-||.| .+...+|..+|+.| |+|..|.|
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~i 183 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKI 183 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEe
Confidence 34467788999999999 67888999998877 57777765
No 159
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=86.83 E-value=0.09 Score=48.38 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=53.9
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 141 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~ 141 (238)
..++|||.||+++++.++|..++..+-.+..+.+-....-....-+.+|+|+---....|+.+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 4578999999999999999999998876666655433222333557889998777777777778887665443
No 160
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=86.66 E-value=1.5 Score=37.48 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecC-------CCCCcceEEEEEeCCHHHHHHH----HHHhCC--Ce
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEP-------RTRISRGFAFVTMDGVEDAERC----IKYLNQ--SV 136 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~-------~tg~~~g~afV~f~~~e~A~~A----l~~l~g--~~ 136 (238)
+..|.+.||...++-..+...|.+||+|+.|.++.+. ...+......+.|-+.+.|... |+.|.- +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999765 1223346788999998887653 333332 35
Q ss_pred eCCeEEEEEecc
Q 026421 137 LEGRYITVERSR 148 (238)
Q Consensus 137 i~g~~l~V~~a~ 148 (238)
|....|.|.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 666677766654
No 161
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=86.09 E-value=0.86 Score=37.32 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=46.2
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
.........+++.+++..++..++..+|..+|.+..+.+...........+.++.+.....+..++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 3445567899999999999999999999999999777776554433333344444444444444444
No 162
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.94 E-value=0.16 Score=45.60 Aligned_cols=77 Identities=4% Similarity=-0.153 Sum_probs=60.4
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
+..|+..|+..+++.+|.-+|.-||.|..+.+....+.+...-.+||+..+ .+|+.||..+.-..+.+.++.|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788899999999999999999999988877665566667778888765 56677777676667777777777765
No 163
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=83.62 E-value=11 Score=28.31 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=49.4
Q ss_pred CCEEEecCCCCC---CcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 70 GNTLYVTGLSTR---VTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 70 ~~~l~V~nLp~~---~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...|.|...... .+...|.+++.+-| .++.+..- .+-..|.|.+.++..+|.+.|....-++..|.+.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~--------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE--------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee--------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 346777665333 56677888888887 44555443 2368899999999999988887665556677766
Q ss_pred ecc
Q 026421 146 RSR 148 (238)
Q Consensus 146 ~a~ 148 (238)
.+.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 654
No 164
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=83.20 E-value=5.7 Score=25.24 Aligned_cols=54 Identities=28% Similarity=0.230 Sum_probs=41.3
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCH----HHHHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGV----EDAERCIKY 131 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~----e~A~~Al~~ 131 (238)
||.|.||.-..-...|++.+...-.|..+.+-.. .+.+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 6788888888888899999999988888887654 34788888643 566666664
No 165
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=81.06 E-value=7.4 Score=27.10 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=39.9
Q ss_pred EEecCCCCCCcHHHHHHHhhhc-C-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 73 LYVTGLSTRVTERDLEKHFSKE-G-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~-G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.|+.-++..++..+|++.++.+ + .|..|..+..+. ...=|||+|..-+.|......|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 4455577899999999999874 5 566666554431 2346999999888877765533
No 166
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=80.42 E-value=2.8 Score=38.19 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=43.0
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCCC
Q 026421 78 LSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKR 151 (238)
Q Consensus 78 Lp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~~ 151 (238)
+.......-+..+|+++|.++.+.++... .++..|.|+ +.|..+|.-++...|+.. |.|-+..+-+
T Consensus 205 p~ks~~s~~r~k~fee~g~~~r~el~p~~-----hg~~~vv~~--enan~~m~s~da~ei~~~-l~~~~ynptk 270 (526)
T KOG2135|consen 205 PEKSRNSENRRKFFEEFGVLERGELCPTH-----HGCVPVVSK--ENANKTMKSEDAAEIMKT-LPPPGYNPTK 270 (526)
T ss_pred cccccccHHhhhhhHhhceeeeccccccc-----cccceeEee--ccccccccCCcchhhhhc-CCCCCcCCCC
Confidence 33466778889999999998877766543 345566665 777777776665555543 5555544433
No 167
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=80.39 E-value=3.7 Score=34.15 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=29.7
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCF 101 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~ 101 (238)
......+||+-|||..+|++.|..++.++|.+..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 345567999999999999999999999998655443
No 168
>PRK11901 hypothetical protein; Reviewed
Probab=79.87 E-value=4.6 Score=35.25 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=40.3
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEE--EEeCCHHHHHHHHHHhCCC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAF--VTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~af--V~f~~~e~A~~Al~~l~g~ 135 (238)
..+|-|..+ ..++.|..|..+++ +..++|......|+.- |.+ =.|.+.++|..||..|...
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 456655544 45788888888775 4556665554444332 443 3789999999999988653
No 169
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=78.19 E-value=0.52 Score=38.72 Aligned_cols=73 Identities=25% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCEEEecC----CCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 70 GNTLYVTG----LSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 70 ~~~l~V~n----Lp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
..+++.++ |...++++.+...|...+.|..+.+..+.. +.+..+.||++.-..+...|+...++..+.-+++.
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 45666677 777788888899999999999988887754 66788999999888888888887666554444333
No 170
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=76.27 E-value=1.3 Score=41.86 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=57.3
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
.+||+.|-....+..-|..++..+++++.++++.....+....-||++|..+..|..|.. |.+..+....|++
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKS 584 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceec
Confidence 378888877777778888889999999988888887777767789999999998877766 6666666555544
No 171
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=72.46 E-value=15 Score=24.34 Aligned_cols=54 Identities=31% Similarity=0.345 Sum_probs=40.9
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCH----HHHHHHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGV----EDAERCIK 130 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~----e~A~~Al~ 130 (238)
.+|+|.++.-.--...|+..+.....|..+.+-+. .+.++|+|.+. ++...||+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~~~~~~~~i~~ai~ 61 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDSNKVDIEAIIEAIE 61 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcCCcCCHHHHHHHHH
Confidence 57888888877777889999999988988888766 34699999873 34444444
No 172
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=71.79 E-value=14 Score=29.61 Aligned_cols=8 Identities=13% Similarity=0.139 Sum_probs=3.4
Q ss_pred hcCCceEE
Q 026421 93 KEGKVASC 100 (238)
Q Consensus 93 ~~G~i~~v 100 (238)
-||.|.++
T Consensus 97 IfG~i~d~ 104 (215)
T KOG3262|consen 97 IFGPINDV 104 (215)
T ss_pred hccccccc
Confidence 34444443
No 173
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=71.75 E-value=28 Score=23.60 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=40.4
Q ss_pred EEecCCCCCCcHHHHHHHhhhc-------CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 73 LYVTGLSTRVTERDLEKHFSKE-------GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~-------G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
|...+||..+|.++|.++..+. ..|..+........+ +-||+.+=.+++.+.++-+.. |..+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 4567899889999988765543 334444333332222 678888888988888877743 5543
No 174
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=71.72 E-value=16 Score=26.43 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=29.4
Q ss_pred HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 85 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 85 ~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
.+|.+++.++| |.+..|.++..++ .-||++++.+.++.-++|.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n--~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEEN--LLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcc--cEEEEEEEcChHHHHHHHh
Confidence 56778888887 5666666665443 5699999996665555443
No 175
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=70.09 E-value=17 Score=26.94 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=32.4
Q ss_pred EEecCCCC---CCcHHHHHHHhhhc-CC----ceEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 026421 73 LYVTGLST---RVTERDLEKHFSKE-GK----VASCFLVVEPRTRISRGFAFVTMDGVEDAERC 128 (238)
Q Consensus 73 l~V~nLp~---~~t~~~L~~~f~~~-G~----i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~A 128 (238)
+.|.-|.+ .++.+||.+-+++. -. |.-+.+-.....|++.|||.| |.+.+.|.+.
T Consensus 23 mvvdvlHPG~a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 23 MVVDVLHPGKANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred eeEEEecCCCCCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 33444544 67888888777543 22 222233344456778889986 6776665543
No 176
>PF14893 PNMA: PNMA
Probab=69.82 E-value=4.9 Score=35.39 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhh
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSK 93 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~ 93 (238)
++-+.|.|.+||.+|++++|++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 45678999999999999999988754
No 177
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=69.25 E-value=5.7 Score=34.50 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=24.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 115 AFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 115 afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
|||+|++.++|+.|++.+..... ..+.|+.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCC
Confidence 79999999999999996554433 445666664
No 178
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=69.02 E-value=7 Score=31.18 Aligned_cols=50 Identities=18% Similarity=0.060 Sum_probs=34.0
Q ss_pred CcHHHHHHHhhhc-CCceEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHH
Q 026421 82 VTERDLEKHFSKE-GKVASCFLVVEPRT-RISRGFAFVTMDGVEDAERCIKY 131 (238)
Q Consensus 82 ~t~~~L~~~f~~~-G~i~~v~i~~~~~t-g~~~g~afV~f~~~e~A~~Al~~ 131 (238)
+|+++|.++..-. |++..|.+-..... ...+|-.||+|.+.+.|.++++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4555555544333 68888776544322 24578899999999999998873
No 179
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=67.55 E-value=2 Score=37.73 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=36.9
Q ss_pred HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 84 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 84 ~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
...|.+++++.|.|..-.|...-+ .|.+||.+-.+++++++++.|++.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFN----mGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFN----MGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhc----CccceEEEEcHHHHHHHHHHHHhc
Confidence 467888888999887655544332 567888888999999999988765
No 180
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=67.52 E-value=40 Score=33.04 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=13.3
Q ss_pred ceEEEEEeCCHHHHHHHHH
Q 026421 112 RGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 112 ~g~afV~f~~~e~A~~Al~ 130 (238)
.|+.||-++...++..|+.
T Consensus 509 lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 509 LGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred cCeeEeehHhcCHHHHHhh
Confidence 5778888877776666554
No 181
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=67.36 E-value=24 Score=24.73 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=32.1
Q ss_pred HHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 84 ERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 84 ~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
.+.++++++++| +|+.+.+..... --++++++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~y----D~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEY----DFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCC----CEEEEEEcCCHHHHHHHHHHHH
Confidence 345677777776 788887775432 3477889999998887665443
No 182
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=65.40 E-value=40 Score=22.89 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=43.4
Q ss_pred cCCCCCCcHHHHHHH-hhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 76 TGLSTRVTERDLEKH-FSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 76 ~nLp~~~t~~~L~~~-f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
-.+|.-+.-+||... -..||...++.+..+ --.|-..+.++..+||+.++. ....+.|.|-.
T Consensus 14 i~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRilL 76 (79)
T cd06405 14 IQFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDR-SPHMKSLRILL 76 (79)
T ss_pred EecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHcc-CccccceeEeE
Confidence 346667777777554 468898888776543 267888999999999998876 44444555544
No 183
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=64.93 E-value=39 Score=22.51 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=42.2
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
.+|.|......-.-.+|..+|...+ .|..+.+......+......-|+..+.++....|+.|...
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQI 72 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTS
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCC
Confidence 3555655555556778888888886 6777777664323433444556778999999998888653
No 184
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=64.57 E-value=27 Score=23.84 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=39.4
Q ss_pred EEEecCCCCCCcHHHHHHHhhhc-C-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKE-G-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY 131 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~-G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~ 131 (238)
..|+..++..++..+|++.++.+ + +|..|..+.-+. ...=|||++..-+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 35566688999999999999874 4 566665554431 233699999887777665443
No 185
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=64.28 E-value=28 Score=32.45 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=41.4
Q ss_pred CCEEEecCCCCCCcHHHHHHHhh----hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~----~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
+..|.++.-....+..+|..+|. .+|.|+.+.|...+... .....++.|.+.++|..|+..+.
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~-~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPP-VARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCc-ceEEEEEECCCHHHHHHHHHHHH
Confidence 34444443222233457777765 67889988877665433 24577889999999999988664
No 186
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=63.61 E-value=3.2 Score=37.08 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=47.0
Q ss_pred CCEEEecCCCCCCcH--------HHHHHHhhh--cCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 70 GNTLYVTGLSTRVTE--------RDLEKHFSK--EGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~--------~~L~~~f~~--~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
-..+|+.++....+. ++|..+|.. .+.+..|.+-.+.....+.|..||+|.....|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 346777777664443 488889988 5777788777776667778899999999999999973
No 187
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=63.13 E-value=18 Score=23.65 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=16.3
Q ss_pred HHHHHHHhhhcCCceEEEEe
Q 026421 84 ERDLEKHFSKEGKVASCFLV 103 (238)
Q Consensus 84 ~~~L~~~f~~~G~i~~v~i~ 103 (238)
.++|.++|+.+|+|.-+.|.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36799999999999876654
No 188
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=61.45 E-value=41 Score=23.86 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=31.9
Q ss_pred EEEecCCCCCCcHHHHHHHhhhc--------CCceEEEEeec-----CCCCCcce-EEEEEeCCHHHHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKE--------GKVASCFLVVE-----PRTRISRG-FAFVTMDGVEDAERCIK 130 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~--------G~i~~v~i~~~-----~~tg~~~g-~afV~f~~~e~A~~Al~ 130 (238)
++|| |.++++++++.+++..+ |+|..+...-. +-.+...| |.++.|....++.+.|+
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4555 45677777766655443 46666542211 11122344 67888887666666665
No 189
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=61.07 E-value=7.6 Score=36.08 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=33.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 112 RGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 112 ~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
..+|+++|++++.+.+|+..++|....+..+.|..+...
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 359999999999999999999999888888777776543
No 190
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=60.21 E-value=17 Score=25.48 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=22.3
Q ss_pred EEEEeCCHHHHHHHHHHhCCC--eeCCeEEEEEe
Q 026421 115 AFVTMDGVEDAERCIKYLNQS--VLEGRYITVER 146 (238)
Q Consensus 115 afV~f~~~e~A~~Al~~l~g~--~i~g~~l~V~~ 146 (238)
|+|+|.+..-|+..|+ +..+ .+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEE
Confidence 7899999999999988 4333 45666655543
No 191
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=59.10 E-value=56 Score=22.45 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=34.0
Q ss_pred EEecCCCCCCcHHHHHHHhh-------hcCCceEEEEeecCCCC---CcceEE-EEEeCCHHHHHHH
Q 026421 73 LYVTGLSTRVTERDLEKHFS-------KEGKVASCFLVVEPRTR---ISRGFA-FVTMDGVEDAERC 128 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~-------~~G~i~~v~i~~~~~tg---~~~g~a-fV~f~~~e~A~~A 128 (238)
|.+-.|...++++++.+++. +.-.|+.+.+-.+.... +.-.++ +++|++.++.++.
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y 70 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAY 70 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHH
Confidence 45557888898888865543 33456777665544322 223344 5789998876554
No 192
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=58.58 E-value=1e+02 Score=25.39 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=35.0
Q ss_pred cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--HhCCCeeCC
Q 026421 83 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK--YLNQSVLEG 139 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~--~l~g~~i~g 139 (238)
+.--|++-+...|.|---.-....+..-+.-+-|-.=.++|+|.+||. .|+|.+|--
T Consensus 29 ~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 29 DLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred HHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 445566777777765433222222222233356667778999999996 689988843
No 193
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.23 E-value=47 Score=20.68 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=29.2
Q ss_pred cHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 026421 83 TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 136 (238)
Q Consensus 83 t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~ 136 (238)
.-.+|.++|.++| .|..+....... .......|..++.+.+.++|+. +|..
T Consensus 12 ~L~~i~~~l~~~~~nI~~i~~~~~~~--~~~~~v~~~ve~~~~~~~~L~~-~G~~ 63 (65)
T cd04882 12 GLHEILQILSEEGINIEYMYAFVEKK--GGKALLIFRTEDIEKAIEVLQE-RGVE 63 (65)
T ss_pred HHHHHHHHHHHCCCChhheEEEccCC--CCeEEEEEEeCCHHHHHHHHHH-CCce
Confidence 3456778888886 566665433321 1234455666777777777663 4443
No 194
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=56.19 E-value=4 Score=27.06 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=25.8
Q ss_pred HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 85 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 85 ~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
++|++.|..+.....+. +-.+|..|++.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~v----------kL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV----------KLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhh----------hhhhccCCCCHHHHHHHHHHh
Confidence 57777776654333321 126899999999988887755
No 195
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=56.15 E-value=51 Score=21.06 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=31.3
Q ss_pred cHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 026421 83 TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 136 (238)
Q Consensus 83 t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~ 136 (238)
.-.+|.++|.+.| .|..+.+..... +++.-|.+.+.+.|.++|+. +|..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 4567888888887 677776544321 35556667777777777763 4443
No 196
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.90 E-value=52 Score=21.10 Aligned_cols=51 Identities=8% Similarity=0.088 Sum_probs=27.9
Q ss_pred cHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeC--CHHHHHHHHHHhCCCe
Q 026421 83 TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMD--GVEDAERCIKYLNQSV 136 (238)
Q Consensus 83 t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~--~~e~A~~Al~~l~g~~ 136 (238)
.-..|.++|.++| .|..+...... .......+|.++ +.+.+.++|+. +|..
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~--~~~~~~v~i~v~~~~~~~~~~~L~~-~G~~ 67 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSK--EEDNKILVFRVQTMNPRPIIEDLRR-AGYE 67 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccC--CCCeEEEEEEEecCCHHHHHHHHHH-CCCe
Confidence 4567888888887 56666543321 212334455554 45555666653 4443
No 197
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.77 E-value=24 Score=32.90 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=45.4
Q ss_pred CEEEecCCCCCC---cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 71 NTLYVTGLSTRV---TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 71 ~~l~V~nLp~~~---t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
.-=+|+||+.-. ....|..+-.+||+|..++|-. .-.|...+.+.|+.|+. -++..+.+++.
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 344588888733 3455666667999999777632 34788889999999999 57888888765
No 198
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=55.04 E-value=68 Score=22.17 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHhhh-cCC----ceEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 026421 80 TRVTERDLEKHFSK-EGK----VASCFLVVEPRTRISRGFAFVTMDGVEDAER 127 (238)
Q Consensus 80 ~~~t~~~L~~~f~~-~G~----i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~ 127 (238)
...+..+|++.+++ |+. |.-..|......+.+.|||+| |.+.+.+++
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 35567788776654 332 222234444444556677765 677776654
No 199
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=54.96 E-value=61 Score=21.60 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=36.2
Q ss_pred EEEecCCCCCCcHHHHHHHhh-hcCCc-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 72 TLYVTGLSTRVTERDLEKHFS-KEGKV-ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~-~~G~i-~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
.+++-.|+..++-++|...+. .|+.. ..+.|....+.| -+|.+.+.++.+.|+..+.
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 345556788899888876653 44422 233333222212 3899999999999999654
No 200
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=54.74 E-value=3.9 Score=26.86 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=30.4
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVAS-CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~-v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
..|.|+.+...-..+.+...|...|.-.. +.+.... . ..-+-+-.|.+.++|++++..|.
T Consensus 5 y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~--~-~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 5 YYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGG--P-WYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEET--T-CEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCC--c-eEEEEECCCCCHHHHHHHHHHHh
Confidence 45666665543333444444444454333 2222221 1 12233347899999999999887
No 201
>PRK10905 cell division protein DamX; Validated
Probab=54.62 E-value=29 Score=30.29 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=37.3
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEE--EEEeCCHHHHHHHHHHhCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFA--FVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~a--fV~f~~~e~A~~Al~~l~g 134 (238)
.+|-|..+ .+++.|.+|..+.+ +....+.....+|+. .|. +=.|.+.++|++||+.|..
T Consensus 248 YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 248 YTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred eEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 45555544 46688888888875 344334444334432 233 3378999999999998854
No 202
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=54.57 E-value=48 Score=20.26 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=29.4
Q ss_pred cHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 026421 83 TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 129 (238)
Q Consensus 83 t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al 129 (238)
.-.+|.++|.+.| .|..+.+.... .......+++++.+.|.++|
T Consensus 11 ~l~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 11 RLAEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred hHHHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 3456677787776 67677655432 23567778888888877765
No 203
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=54.13 E-value=32 Score=24.65 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=43.3
Q ss_pred CCCEEEecCCCCCCc--HHHHHHHhhhcCCceEEEEeecCC-CCCcceEEEEEeCC--HHHHHHHHHHhCCCee-CCeEE
Q 026421 69 PGNTLYVTGLSTRVT--ERDLEKHFSKEGKVASCFLVVEPR-TRISRGFAFVTMDG--VEDAERCIKYLNQSVL-EGRYI 142 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t--~~~L~~~f~~~G~i~~v~i~~~~~-tg~~~g~afV~f~~--~e~A~~Al~~l~g~~i-~g~~l 142 (238)
.+..|.|+-.....+ .+.|.++|.+...|..+.+..-.. .+...-+-.|+|.. .+.+..+|..+-...+ ++..|
T Consensus 4 ~g~~v~l~~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~v 83 (108)
T PF14581_consen 4 KGEKVLLGEPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWPV 83 (108)
T ss_pred CCCEEEecCCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCceE
Confidence 455777764432222 356788888888888776554433 33334344567766 3333333333333333 34666
Q ss_pred EEEecc
Q 026421 143 TVERSR 148 (238)
Q Consensus 143 ~V~~a~ 148 (238)
.+....
T Consensus 84 d~~~~~ 89 (108)
T PF14581_consen 84 DFVLLD 89 (108)
T ss_pred EEEEcc
Confidence 665554
No 204
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=53.37 E-value=54 Score=20.52 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=31.0
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCH-HHHHHHHHHhCC
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGV-EDAERCIKYLNQ 134 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~-e~A~~Al~~l~g 134 (238)
+|.|......-.-.+|..+|..++ .|..+........+ ....++++... +....+++.|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPG--ISRITIVVEGDDDVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCC--eEEEEEEEECCHHHHHHHHHHHhC
Confidence 455543333345667888898886 56666554321112 22233333322 555566665543
No 205
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=53.22 E-value=48 Score=20.39 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.9
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGK 96 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~ 96 (238)
..++|.+.....+.++|.+++..+|-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46788887767889999999999986
No 206
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=53.01 E-value=37 Score=24.17 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=24.9
Q ss_pred EEEecCCCCCCcHHHHHH---HhhhcCCceEEEE--eecCCCCCcceEEEE
Q 026421 72 TLYVTGLSTRVTERDLEK---HFSKEGKVASCFL--VVEPRTRISRGFAFV 117 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~---~f~~~G~i~~v~i--~~~~~tg~~~g~afV 117 (238)
..|+.+||..+.+.++.. +|..+..-..|.+ ..........|++++
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~ 62 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGIS 62 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEE
Confidence 468899999988877654 4444443333333 112334445565544
No 207
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=52.75 E-value=80 Score=22.29 Aligned_cols=59 Identities=8% Similarity=0.172 Sum_probs=42.0
Q ss_pred cCCCCCCcHHHHHHH----------hhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 026421 76 TGLSTRVTERDLEKH----------FSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 138 (238)
Q Consensus 76 ~nLp~~~t~~~L~~~----------f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~ 138 (238)
-+||.+++.+++.++ +..-|.+..+.-+. |....++++.-++.++....|..|.=..+.
T Consensus 9 v~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~~----G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~m 77 (91)
T PF02426_consen 9 VNVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRVV----GRYANVSIFDVEDNDELHELLSSLPLFPYM 77 (91)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEec----CCcceEEEEECCCHHHHHHHHHhCCCccce
Confidence 378888888776554 34558888876653 444668888889999988888766555443
No 208
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.65 E-value=55 Score=20.44 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=29.5
Q ss_pred EEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
|.|......-...+|..+|..++ .|..+.+.... .....+..|.+.+. ...++++.|.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~--~~~~~~i~i~v~~~-~~~~~i~~l~ 60 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKE--KGDQALMVIEVDQP-IDEEVIEEIK 60 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEecc--CCCeEEEEEEeCCC-CCHHHHHHHH
Confidence 33433333345677888888886 56666544311 11133344555544 4445555443
No 209
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=51.44 E-value=34 Score=28.64 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=39.1
Q ss_pred CCEEEecCCCCCCc----HHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHHhCCCeeCCeEEE
Q 026421 70 GNTLYVTGLSTRVT----ERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMD-GVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 70 ~~~l~V~nLp~~~t----~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~-~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
...|||++|....- .+.|...+.+-+ .|+.+.+-.. ..||+....+ +.|+..++|+.+.+..+.-..|-
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ss-----y~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSS-----YNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccc-----ccccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 45799999876432 244444444433 2333333221 2345544443 67778888887766555444444
Q ss_pred EEec
Q 026421 144 VERS 147 (238)
Q Consensus 144 V~~a 147 (238)
|-.+
T Consensus 112 ~GhS 115 (299)
T KOG4840|consen 112 VGHS 115 (299)
T ss_pred EecC
Confidence 4443
No 210
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.00 E-value=8.5 Score=27.03 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=19.7
Q ss_pred CCCEEEecCCCCCCcHHHHHHHh
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHF 91 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f 91 (238)
...+|.|.|||..+.+++|++.+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 36789999999999999998754
No 211
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=50.59 E-value=43 Score=25.86 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=25.1
Q ss_pred ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 97 VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 97 i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
|..|.++.. ..||.||+....+++..+|..+.+.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 445554433 4889999999888888888877664
No 212
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=50.45 E-value=18 Score=25.86 Aligned_cols=21 Identities=5% Similarity=0.090 Sum_probs=17.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHh
Q 026421 112 RGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 112 ~g~afV~f~~~e~A~~Al~~l 132 (238)
--|++++|.+.+.+.+|+.++
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 458899999999998888754
No 213
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=49.73 E-value=24 Score=23.43 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeeC
Q 026421 114 FAFVTMDGVEDAERCIKYLNQSVLE 138 (238)
Q Consensus 114 ~afV~f~~~e~A~~Al~~l~g~~i~ 138 (238)
+.+|+|.+..+|.+|-+.|....|.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCc
Confidence 7899999999999998877665543
No 214
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=49.65 E-value=54 Score=21.15 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=26.2
Q ss_pred HHHHHhhhcC-CceE----EEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 86 DLEKHFSKEG-KVAS----CFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 86 ~L~~~f~~~G-~i~~----v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
.+..++.+|| +|+. +.++.. .....-..+|+|.+.++|.+++.
T Consensus 10 ~~~~~l~~~GG~~l~~~~~~~~leG--~~~~~~~viieFPs~~aa~~~~~ 57 (65)
T PF07045_consen 10 AVPPILEKYGGRVLARGGEPEVLEG--DWDPDRVVIIEFPSMEAAKAWYN 57 (65)
T ss_dssp HHHHHHHHTT-EEEEECEEEEEEES--T-SSSEEEEEEESSHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEEECCceeEEec--CCCCCeEEEEECCCHHHHHHHHC
Confidence 3456677786 3322 223322 22335688999999999988764
No 215
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=49.04 E-value=43 Score=23.38 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=29.9
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD 120 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~ 120 (238)
...-|||++++..+-+.-.+.+.+..+.-. +.|+....+ ..||+|-++-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEccCC--CCCEEEEEeC
Confidence 456799999998877665555555443333 333333222 4789998873
No 216
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=48.95 E-value=59 Score=24.00 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=12.0
Q ss_pred EEEecCCCCCCcHHHHH
Q 026421 72 TLYVTGLSTRVTERDLE 88 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~ 88 (238)
.|||+++|.....+.|+
T Consensus 7 ~l~~G~~~~~~~~~~l~ 23 (138)
T smart00195 7 HLYLGSYSSALNLALLK 23 (138)
T ss_pred CeEECChhHcCCHHHHH
Confidence 59999998766544443
No 217
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=48.94 E-value=30 Score=23.02 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=33.3
Q ss_pred CCCcHHHHHHHhhhcCCceEEEE-eecCCCCCcceEEEEEeC-CHHHHHHHHHHhCC
Q 026421 80 TRVTERDLEKHFSKEGKVASCFL-VVEPRTRISRGFAFVTMD-GVEDAERCIKYLNQ 134 (238)
Q Consensus 80 ~~~t~~~L~~~f~~~G~i~~v~i-~~~~~tg~~~g~afV~f~-~~e~A~~Al~~l~g 134 (238)
..+.+..|.++..+|+.-.+|.. ..+.-.+.+-|.-+|++. +.++.++|++.|..
T Consensus 12 ~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 12 NSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLRE 68 (76)
T ss_dssp CSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 45667778888888875433321 112223455678888884 45566788887754
No 218
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=48.56 E-value=35 Score=28.44 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=44.6
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCC-ceEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGK-VASCFLVVEP---RTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~-i~~v~i~~~~---~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.-+|.|.-||..-.++-|..+|+..|- |....+..|. +.|.+. |..|+..-..-.+.||..|
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~-y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSR-YVDLTLTGTVRLADALNHL 183 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCc-ceEEEEeeeEEHHHHHhhh
Confidence 457888899998899999999999994 4444454444 335544 7788887766667776654
No 219
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=48.44 E-value=35 Score=23.44 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=21.4
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCCe
Q 026421 111 SRGFAFVTMDGVEDAERCIKYLNQSV 136 (238)
Q Consensus 111 ~~g~afV~f~~~e~A~~Al~~l~g~~ 136 (238)
.+||.|||=.+..++..||..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 48999999999999999988766543
No 220
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=48.15 E-value=96 Score=22.25 Aligned_cols=47 Identities=21% Similarity=0.243 Sum_probs=25.0
Q ss_pred CCcHHHHHHHhh-hcCCceEEEEeec----CCCCCcceEEEEEeCCHHHHHHH
Q 026421 81 RVTERDLEKHFS-KEGKVASCFLVVE----PRTRISRGFAFVTMDGVEDAERC 128 (238)
Q Consensus 81 ~~t~~~L~~~f~-~~G~i~~v~i~~~----~~tg~~~g~afV~f~~~e~A~~A 128 (238)
..+..+|++.+. .|+.-.++.++.. ...+++.|||.| |.+.+.|.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 567777776554 4553333333322 223555666665 6666665543
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=47.32 E-value=5.5 Score=30.29 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=44.8
Q ss_pred EEEecCCC--CCCcHHHHHHHhhhc-CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 72 TLYVTGLS--TRVTERDLEKHFSKE-GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 72 ~l~V~nLp--~~~t~~~L~~~f~~~-G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
...|+.+. ..++...|.+.+.+. +....+.+..- ..++..+.|.+.++++.++. .....+++..|.++.-.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 34455442 245666676666542 33223333221 14689999999999999988 45567778777776665
Q ss_pred C
Q 026421 149 R 149 (238)
Q Consensus 149 ~ 149 (238)
+
T Consensus 91 ~ 91 (153)
T PF14111_consen 91 P 91 (153)
T ss_pred c
Confidence 4
No 222
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=47.27 E-value=68 Score=19.90 Aligned_cols=57 Identities=11% Similarity=0.150 Sum_probs=30.2
Q ss_pred EEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
|+|......-.-.+|..+|.+++ .|..+.+...... .....++++.+. .....++.|
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~--~~~~~~~~v~~~-~~~~l~~~l 59 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKG--GIAYMVLDVDSP-VPEEVLEEL 59 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCC--CEEEEEEEcCCC-CCHHHHHHH
Confidence 34433344445678889998887 6767766443211 133445555443 333444444
No 223
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=46.49 E-value=57 Score=23.05 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=31.9
Q ss_pred CCCCCcHHHHHHHhhhcCC-ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 78 LSTRVTERDLEKHFSKEGK-VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 78 Lp~~~t~~~L~~~f~~~G~-i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
+.+.+++..|...|.--|. -+...+-.|.- +.+|.|+|.+.+.+..|.+.|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W----~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYW----RPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccc----eEeEEEECCChHHHHHHHHHHH
Confidence 4456677777666654442 11122222221 4589999999999999887663
No 224
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=46.30 E-value=70 Score=19.80 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=30.3
Q ss_pred EEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEe-CCHHHHHHHHHHh
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTM-DGVEDAERCIKYL 132 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f-~~~e~A~~Al~~l 132 (238)
|.|..-...-.-.+|.++|...| .|..+.+...... ..++|+.+ .+.+.++++++.|
T Consensus 3 v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 3 VRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG---VGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp EEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST---TEEEEEEEEEEGHGHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC---ceEEEEEEECCCCCHHHHHHHH
Confidence 34432233345577888888887 5666666655432 23444444 2344444444443
No 225
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=46.16 E-value=99 Score=21.45 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=37.9
Q ss_pred EEEecCCCCCCcHHHHHHHhh----hcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 72 TLYVTGLSTRVTERDLEKHFS----KEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~----~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
-|+|..++..++-++|.+.+. -.- ..-.++++-+ -| -.|+|.+.++.+.|+..+.-..=.+..|+|
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DE--EG-----Dp~tiSS~~EL~EA~rl~~~n~~~~l~ihv 80 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDE--EG-----DPCTISSQMELEEAFRLYELNKDSELNIHV 80 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECC--CC-----CceeecCHHHHHHHHHHHHhcCcccEEEEe
Confidence 477888888888777655443 221 1222333322 22 247888999988888855433323445554
No 226
>COG4907 Predicted membrane protein [Function unknown]
Probab=45.75 E-value=51 Score=30.43 Aligned_cols=14 Identities=0% Similarity=0.050 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhCCC
Q 026421 122 VEDAERCIKYLNQS 135 (238)
Q Consensus 122 ~e~A~~Al~~l~g~ 135 (238)
.+.+.+||..++-.
T Consensus 525 ~dkVvkam~~~~~~ 538 (595)
T COG4907 525 SDKVVKAMRKALDM 538 (595)
T ss_pred HHHHHHHHHHhCcH
Confidence 35666677655544
No 227
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=45.72 E-value=71 Score=28.88 Aligned_cols=62 Identities=24% Similarity=0.333 Sum_probs=39.9
Q ss_pred CCEEEecC-CCCCCcHHHHHHHhh----hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 70 GNTLYVTG-LSTRVTERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 70 ~~~l~V~n-Lp~~~t~~~L~~~f~----~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
+..|.++. .+......+|..+|. .+|.|+.+.|...+... ...+.++.|.+.++|.+|+..+
T Consensus 131 G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~-~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 131 GEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPE-NIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecCCC-ccEEEEEECCCHHHHHHHHHHH
Confidence 34444432 223334456777774 37888888877665433 2456788999999999988655
No 228
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=45.71 E-value=30 Score=30.80 Aligned_cols=43 Identities=7% Similarity=0.218 Sum_probs=31.8
Q ss_pred CCCEEEecCCCC----CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC
Q 026421 69 PGNTLYVTGLST----RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG 121 (238)
Q Consensus 69 ~~~~l~V~nLp~----~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~ 121 (238)
....|||.|=.. .++.++|..++..... .+.|+.| -||++|..
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvD--------EAY~eF~~ 191 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVID--------EAYIEFSP 191 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEe--------CchhhcCC
Confidence 356788886533 5688999999998766 4445555 59999998
No 229
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=45.55 E-value=96 Score=22.18 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=35.0
Q ss_pred CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 81 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 81 ~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
+-++++|.-+...-|.|.+|.+...- -| .=.+.+...+..+++.+|+.|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~-YG--~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPV-YG--EITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETT-TE--EEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCC-Cc--EEEEEEecCCHHHHHHHHHHHhc
Confidence 44567788777766788888775432 22 33577888999999999997754
No 230
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=44.91 E-value=81 Score=25.24 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=39.0
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRT-RISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~t-g~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.=||.|.+...+-..|.+.|...|- .|.++..+.+ ..+.++-+|.|.+.++...++..+
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 5578999998888999999988884 3444444322 224578899999999988888754
No 231
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.73 E-value=40 Score=28.55 Aligned_cols=58 Identities=7% Similarity=-0.093 Sum_probs=39.6
Q ss_pred CCEEEecCCCC-----CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC---CHHHHHHHHHHhC
Q 026421 70 GNTLYVTGLST-----RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD---GVEDAERCIKYLN 133 (238)
Q Consensus 70 ~~~l~V~nLp~-----~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~---~~e~A~~Al~~l~ 133 (238)
..+|.|.|++. ..+.++|..++..++....+.++.|. +.+|+.-. +.+....+++.+.
T Consensus 137 ~v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~lg~~lDt------~H~~~~g~~~~~~~~~~~~~~~~~ 202 (274)
T TIGR00587 137 IVTILLENMAGQGSELGRSFEELAYIIKVIVDKRRIGVCLDT------CHFFAAGYDITTKAYFEVVKNEFD 202 (274)
T ss_pred CCEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCceEEEEEh------hhHHhcCCCcCCHHHHHHHHHHHH
Confidence 47899999974 24889999999988765678888773 34443332 3555666666554
No 232
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=44.56 E-value=49 Score=23.54 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=14.6
Q ss_pred ceEEEEEeCCHHHHHHHH
Q 026421 112 RGFAFVTMDGVEDAERCI 129 (238)
Q Consensus 112 ~g~afV~f~~~e~A~~Al 129 (238)
.....|+|.+.+.|..|.
T Consensus 53 tr~vviEFps~~~ar~~y 70 (96)
T COG5470 53 TRNVVIEFPSLEAARDCY 70 (96)
T ss_pred ccEEEEEcCCHHHHHHHh
Confidence 458999999999887653
No 233
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=44.54 E-value=30 Score=30.42 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=36.6
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEE-----eec-----CCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFL-----VVE-----PRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i-----~~~-----~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
+....+||.++-..+..+.|..+-+..-+...+.+ +.- ..-.+.-.|+.|.|.++++|.+..+
T Consensus 158 eka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~ 230 (343)
T KOG2854|consen 158 EKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFAR 230 (343)
T ss_pred hheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHH
Confidence 34567888888887776666554443322222111 100 0001223489999999999988776
No 234
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=44.48 E-value=54 Score=24.62 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=22.0
Q ss_pred EEEEeCC--------HHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 115 AFVTMDG--------VEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 115 afV~f~~--------~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
|||+|+. .|-|...++.+|.+.--|..|.|+.
T Consensus 21 AFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKV 60 (129)
T COG1098 21 AFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKV 60 (129)
T ss_pred eEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEE
Confidence 7888877 3567777777776665666666654
No 235
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=44.36 E-value=48 Score=29.43 Aligned_cols=45 Identities=20% Similarity=0.153 Sum_probs=25.5
Q ss_pred CCCCCcHHHHHHHhhhc-CCceEEEEeec---CCC--CCcceEEEEEeCCH
Q 026421 78 LSTRVTERDLEKHFSKE-GKVASCFLVVE---PRT--RISRGFAFVTMDGV 122 (238)
Q Consensus 78 Lp~~~t~~~L~~~f~~~-G~i~~v~i~~~---~~t--g~~~g~afV~f~~~ 122 (238)
|...++.++|.++|.+| ..-..|.|+.. +.+ -....||.|-|...
T Consensus 253 l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d 303 (349)
T COG0002 253 LKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVD 303 (349)
T ss_pred cCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEc
Confidence 45568999999999766 33334554432 111 12244666666443
No 236
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=42.90 E-value=1.7e+02 Score=23.26 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=15.7
Q ss_pred EEEEEeC----CHHHHHHHHHHhCCCeeCCe
Q 026421 114 FAFVTMD----GVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 114 ~afV~f~----~~e~A~~Al~~l~g~~i~g~ 140 (238)
-.++|+. +.+.|..||.. -...|-.+
T Consensus 130 ~ilfei~~~~~~~~~akeAlr~-a~~KLP~k 159 (172)
T PRK04199 130 QKIFTVRVNPEHLEAAKEALRR-AAMKLPTP 159 (172)
T ss_pred CEEEEEEecCCCHHHHHHHHHH-hhccCCCc
Confidence 4455554 67788888883 34444433
No 237
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=42.53 E-value=83 Score=24.27 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=35.2
Q ss_pred EEEecCCCCCCcHHHHHHHhhh-cC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSK-EG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERC 128 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~A 128 (238)
..||.-++...+..+|++.++. |+ .|..|..+.-+. + .-=|||.+....+|...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHH
Confidence 3445557788999999999987 44 455665544332 1 23599999776665443
No 238
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=42.24 E-value=96 Score=20.22 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=30.4
Q ss_pred CcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCC---HHHHHHHHHHhCC
Q 026421 82 VTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDG---VEDAERCIKYLNQ 134 (238)
Q Consensus 82 ~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~---~e~A~~Al~~l~g 134 (238)
-.-.+|.++|..+| .|..|.-..... ....-..||++.. ....+.+++.|..
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Srp~~~-~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEeeecCC-CCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34567888888886 566653332221 1223456788874 5566677776644
No 239
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=42.24 E-value=79 Score=22.06 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=36.5
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC--HHHHHHHHHHhCCC
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG--VEDAERCIKYLNQS 135 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~--~e~A~~Al~~l~g~ 135 (238)
.+|.-.||.. .-.|++|+..++...+|..+.-..++...+.+||-|.. .++.++.++.|+..
T Consensus 11 ~~~~v~~PE~--pGal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 11 ALFAVEFPER--PGALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp EEEEEE--BS--TTHCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred EEEEEECCCC--ccHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 4555566653 23577888888876666665555556667788877754 45556666767654
No 240
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=41.96 E-value=75 Score=25.75 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=28.9
Q ss_pred cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 83 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
+.++..+++..++.-. +.|..+ +...|-+.+...+.++|..||..+
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHh
Confidence 5677778887776433 334333 222233455568999999999865
No 241
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=41.52 E-value=1.3e+02 Score=21.83 Aligned_cols=47 Identities=6% Similarity=0.084 Sum_probs=31.3
Q ss_pred HHHHHhhhcCCceEEEEeecC---------------CCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 86 DLEKHFSKEGKVASCFLVVEP---------------RTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 86 ~L~~~f~~~G~i~~v~i~~~~---------------~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
...++|..||-+..+...-+. ..+..--|.+|+|.+.+...++.+++
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 345789999987766544321 11333458999999999988887754
No 242
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=40.93 E-value=1.1e+02 Score=29.09 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=35.8
Q ss_pred CcHHHHHHHh----hhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 82 VTERDLEKHF----SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 82 ~t~~~L~~~f----~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
.+..+|..+| ..+|.|+++.|...+.. ....++++.|.+.++|.+|+..+.
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P-~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKIP-QHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecCC-cceEEEEEEcCCHHHHHHHHHHHH
Confidence 3445787776 35788998887655432 224578899999999988877543
No 243
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.84 E-value=98 Score=19.90 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=35.8
Q ss_pred EEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
|.|.-....-.-.+|..+++..| .|..+.+.... .+......-|+..+.+.++..+..|..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhc
Confidence 44554555556788888998887 67776664432 121111122445677777777776543
No 244
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=40.21 E-value=1.1e+02 Score=20.21 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=27.9
Q ss_pred cHHHHHHHhhhcC-CceEEEEeecCCCCCc-ceEEEEEeC-CHHHHHHHHHHhCC
Q 026421 83 TERDLEKHFSKEG-KVASCFLVVEPRTRIS-RGFAFVTMD-GVEDAERCIKYLNQ 134 (238)
Q Consensus 83 t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~-~g~afV~f~-~~e~A~~Al~~l~g 134 (238)
.-.+|.++|+.+| .+..|. .-+..+.. .=+-||+|+ ..+..++||+.|+.
T Consensus 13 ~L~~vL~~f~~~~iNlt~Ie--SRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIE--SRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEE--CCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 4566777787776 344443 22222222 224467777 45566778877754
No 245
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=40.21 E-value=1.1e+02 Score=20.30 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=30.2
Q ss_pred cHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCC---HHHHHHHHHHhCC
Q 026421 83 TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDG---VEDAERCIKYLNQ 134 (238)
Q Consensus 83 t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~---~e~A~~Al~~l~g 134 (238)
.-.+|.++|.+++ .|..+....... ....-..||+++. .+..+++|+.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~-~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKG-GLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCC-CCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4567788888886 566665443322 2222344666663 5666777776654
No 246
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=40.03 E-value=86 Score=31.61 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=25.8
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 111 SRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 111 ~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
-+||-|||-.....+..||+.|-+..+. +.|.|
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 3789999999999999999988776655 44433
No 247
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=40.02 E-value=92 Score=22.41 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 026421 84 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERC 128 (238)
Q Consensus 84 ~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~A 128 (238)
+.+|.+.+...| |.+..|.....++ .-|++++..+.+.+.++
T Consensus 25 WPEv~~~l~~~G-i~~ysIf~~g~~~--~LF~~~E~~~~~~~~~~ 66 (106)
T PF05336_consen 25 WPEVLAALREAG-IRNYSIFRDGDTG--RLFMYMETDDFDADMAA 66 (106)
T ss_dssp -HHHHHHHHHCT-EEEEEEEEETTTT--EEEEEEEECT-CHHHHH
T ss_pred CHHHHHHHHHCC-CeEEEEEEeCCCC--EEEEEEEecChhhHHHH
Confidence 456777777776 6677777765443 66889999884444333
No 248
>COG5584 Predicted small secreted protein [Function unknown]
Probab=39.89 E-value=63 Score=23.05 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=24.9
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEeecCCC
Q 026421 77 GLSTRVTERDLEKHFSKEGKVASCFLVVEPRT 108 (238)
Q Consensus 77 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~t 108 (238)
||..+..-+-+++.|+++++|+--+|...++.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe~ 60 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPEV 60 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEeccc
Confidence 55566666778999999999998888776654
No 249
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=39.51 E-value=32 Score=29.22 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=25.2
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEe
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLV 103 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~ 103 (238)
.....|+|||+.++-.-|..++...-.+..+.++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 3466799999999999999988776555344333
No 250
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.42 E-value=96 Score=24.49 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=39.6
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
+|-| +|+..+.++-|.++.+-+|.|... .+. .-.+.|-+.+..++||+.|
T Consensus 114 ~iRv-~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~ 163 (169)
T PF09869_consen 114 TIRV-KLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEF 163 (169)
T ss_pred eEEE-ecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHH
Confidence 4444 789999999999999999988765 111 3477899999999999865
No 251
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=39.38 E-value=1e+02 Score=19.61 Aligned_cols=59 Identities=8% Similarity=0.106 Sum_probs=30.3
Q ss_pred EecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCC--HHHHHHHHHHhCC
Q 026421 74 YVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDG--VEDAERCIKYLNQ 134 (238)
Q Consensus 74 ~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~--~e~A~~Al~~l~g 134 (238)
+|..-...-.-.+|.++|.++| .|..+.+...... ...+..+.+.+ ..++.++|+.+.+
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~--~~~~~~i~v~~~~~~~~~~~l~~~~~ 64 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPG--GEALMVLSVDEPVPDEVLEELRALPG 64 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCC--CEEEEEEEeCCCCCHHHHHHHHcCCC
Confidence 3433334445677888998887 5666655433111 23344444444 2244444554444
No 252
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=39.23 E-value=62 Score=25.08 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=31.6
Q ss_pred EEEecCCCC-CCcHHHHHHHhhhc-CC-ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 72 TLYVTGLST-RVTERDLEKHFSKE-GK-VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~-~~t~~~L~~~f~~~-G~-i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.+|+++|.. ..+-++|+..+... .+ +..+.+-..+ .-+.+.|+|.-+-+|...|..|
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~----~~~sv~V~f~ipreaa~~Lr~L 65 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVE----PWNSVRVTFSIPREAATRLRQL 65 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccc----cCceEEEEEechHHHHHHHHHH
Confidence 356677762 22334444444333 22 2223332222 2458999999998888877766
No 253
>PHA01632 hypothetical protein
Probab=39.02 E-value=33 Score=21.79 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=16.5
Q ss_pred EEecCCCCCCcHHHHHHHhhh
Q 026421 73 LYVTGLSTRVTERDLEKHFSK 93 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~ 93 (238)
|.|..+|..-|+++|+.++.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345789999999999887654
No 254
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.79 E-value=1.6e+02 Score=22.84 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=37.2
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhc---CCceEEEEeecCCC---------CCcce-EEEEEeCCHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKE---GKVASCFLVVEPRT---------RISRG-FAFVTMDGVED 124 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~---G~i~~v~i~~~~~t---------g~~~g-~afV~f~~~e~ 124 (238)
.+|++..+...+++++..++..+- +++..|.+-..+++ ...+. |-+|.|++-+.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 689999999999999988888654 46666665443321 11233 78888887543
No 255
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=38.60 E-value=73 Score=25.35 Aligned_cols=73 Identities=18% Similarity=0.018 Sum_probs=38.5
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEE-EEeecCCCCCcceEEEEEe-CCHH---HHHHHHHHhCCCeeCCeEEEEEe
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASC-FLVVEPRTRISRGFAFVTM-DGVE---DAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v-~i~~~~~tg~~~g~afV~f-~~~e---~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
+|.|.==|..++-++|.++|-+.-....+ .--.|. ...|--+.| .+.+ .|++.++.|+...+...+|.+++
T Consensus 59 ~V~V~yDp~~isy~~LL~~ff~ihDPT~~nrQGnD~----GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI 134 (174)
T COG0225 59 AVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGNDR----GTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEI 134 (174)
T ss_pred EEEEEeCCccccHHHHHHHHheecCCCCCCccCCcc----cccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEe
Confidence 56676667788888888877553221111 111111 122333333 3444 45555666666556666777766
Q ss_pred cc
Q 026421 147 SR 148 (238)
Q Consensus 147 a~ 148 (238)
..
T Consensus 135 ~p 136 (174)
T COG0225 135 EP 136 (174)
T ss_pred ec
Confidence 54
No 256
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=38.35 E-value=42 Score=30.18 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=22.4
Q ss_pred EEEecCCCCCCcHHHHHHHhhh-cCCceEEEEe
Q 026421 72 TLYVTGLSTRVTERDLEKHFSK-EGKVASCFLV 103 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~-~G~i~~v~i~ 103 (238)
+|+|. |...++.++|+++|.+ |..+..|.+.
T Consensus 280 tv~v~-~~~~~~~~~v~~~~~~~y~~~~fV~~~ 311 (381)
T PLN02968 280 TVYVH-YAPGVTAEDLHQHLKERYEGEEFVKVL 311 (381)
T ss_pred EEEEE-eCCCCCHHHHHHHHHHhCCCCCEEEeC
Confidence 55553 5567899999999998 5666666653
No 257
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=38.11 E-value=19 Score=27.72 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=16.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCC
Q 026421 112 RGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 112 ~g~afV~f~~~e~A~~Al~~l~g 134 (238)
-|..+|-|.+.++|++.++...|
T Consensus 114 Mg~~~~aF~~~~~A~~F~~~~GG 136 (149)
T PF05573_consen 114 MGPDLIAFASKEDAEAFAKEHGG 136 (149)
T ss_dssp TS--EEEES-HHHHHHHHHHTEE
T ss_pred CCCcccccCCHHHHHHHHHHcCC
Confidence 46789999999999999996533
No 258
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=37.69 E-value=1.5e+02 Score=21.16 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=37.6
Q ss_pred CEEEecCCCCCC---cHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 026421 71 NTLYVTGLSTRV---TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 136 (238)
Q Consensus 71 ~~l~V~nLp~~~---t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~ 136 (238)
..|.|......+ +..+|.+++.+-| .++.+... .+-..|.|.+.++-.+|.+.|....
T Consensus 32 pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~~--------~~~llirf~~~~~Ql~Ak~~L~~~L 93 (101)
T PF13721_consen 32 PAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQE--------GDSLLIRFDSTDQQLKAKDVLSKAL 93 (101)
T ss_pred CcEEEecCCCCccCChHHHHHHHHHHCCCCcceEEee--------CCEEEEEECCHHHHHHHHHHHHHHc
Confidence 456666543221 2357888888887 34445432 2367899999998888888776543
No 259
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=37.64 E-value=1.2e+02 Score=26.20 Aligned_cols=61 Identities=7% Similarity=-0.105 Sum_probs=35.6
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 026421 77 GLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 138 (238)
Q Consensus 77 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~ 138 (238)
.+|..++.++|++.|...+.-..+.+.......+ ...|++.-.+-..+++.|..+....++
T Consensus 56 ~~p~~~~~~~L~~~L~~l~~~l~l~i~i~~~~~~-~ri~vl~Sg~g~nl~al~~~~~~~~~~ 116 (286)
T PRK13011 56 HSEEGLDEDALRAGFAPIAARFGMQWELHDPAAR-PKVLIMVSKFDHCLNDLLYRWRIGELP 116 (286)
T ss_pred ecCCCCCHHHHHHHHHHHHHHhCcEEEEeecccC-ceEEEEEcCCcccHHHHHHHHHcCCCC
Confidence 5788888999999998887544444433322222 235655555555555555544444443
No 260
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=37.62 E-value=24 Score=20.32 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=10.3
Q ss_pred CCCcHHHHHHHhhhcC
Q 026421 80 TRVTERDLEKHFSKEG 95 (238)
Q Consensus 80 ~~~t~~~L~~~f~~~G 95 (238)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4788999999998754
No 261
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.39 E-value=1.1e+02 Score=19.42 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=28.5
Q ss_pred cHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 83 TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 83 t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.-.+|..+|.++| .|..+.+...... ..+...|.+...++++++++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~--~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREG--IGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecC--CcEEEEEEECCHHHHHHHHHHH
Confidence 4567888898887 5666654433211 2345567776555555555544
No 262
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=37.09 E-value=1.3e+02 Score=20.34 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=40.5
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
.|+|.|-|- --+.+..+|..-| .|..+.+-.....+.++ +-++...+.+..++.+++|+..
T Consensus 6 si~v~n~pG--VL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 6 SLVIHNDPS--VLLRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEecCCC--HHHHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHhCC
Confidence 466776554 3356778888877 67777665433333333 5666678999999999888764
No 263
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=36.50 E-value=66 Score=29.94 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=29.9
Q ss_pred CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 81 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 81 ~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
-|-+++|.+-|.-+-.-.++..+.- ..|+|=+.|.++++|++++++++.
T Consensus 89 liWdqELY~nf~y~q~r~ffhtFeg-----ddc~aGLnF~~E~EA~~F~k~V~~ 137 (569)
T KOG3671|consen 89 LIWDQELYQNFEYRQPRTFFHTFEG-----DDCQAGLNFASEEEAQKFRKKVQD 137 (569)
T ss_pred eeehHHhhhhceeccCccceeeecc-----ccceeeecccCHHHHHHHHHHHHH
Confidence 3455667766655443322222211 145777889999999999886654
No 264
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=35.85 E-value=72 Score=29.13 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=33.0
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhc---CCceEEEEeecCCCCCcceEEE-EEeCCHHHHHHHHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKE---GKVASCFLVVEPRTRISRGFAF-VTMDGVEDAERCIKY 131 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~---G~i~~v~i~~~~~tg~~~g~af-V~f~~~e~A~~Al~~ 131 (238)
.+|.|.-||..++.+++.+.+... +.|. |.=+.|. +.. ++-| |++.....+++.++.
T Consensus 217 ~~i~ITELP~~~~t~~~~e~i~~l~~~~~i~-I~d~~D~-Sd~--~v~ivI~lk~~~~~~~~~~~ 277 (426)
T PF00521_consen 217 NTIVITELPYGVWTEKYKEKIEELVEDKKIK-ISDYRDE-SDR--GVRIVIELKRGADPEKILEG 277 (426)
T ss_dssp EEEEEEE--TT--HHHHHHHHHHHHHTTSST-EEEEEE--BBT--BS-EEEEESTTSHHHHHHHH
T ss_pred cEEEEEeCCccccHHHHHHHHHHHhccCcch-hhHHHhc-CCC--ceeEEEEecCCccHHHHHHH
Confidence 689999999999888887766544 6777 6555665 443 5555 456654445555443
No 265
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.48 E-value=1.2e+02 Score=23.44 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=36.1
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 77 GLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 77 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.|+..+.++-|+++.+..|.|....- . -..+.|.+.+.+.+||+.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~E-~---------D~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFEE-Y---------DLVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEeee-c---------cEEEEeccHHHHHHHHHHH
Confidence 47788899999999999998876641 1 2356788999999999865
No 266
>PRK06545 prephenate dehydrogenase; Validated
Probab=35.33 E-value=2.2e+02 Score=25.21 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=46.6
Q ss_pred CCCCCEEEecCCCC-CCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 67 GNPGNTLYVTGLST-RVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 67 ~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
......|||. ||. .-.-..|..++...| .|++|.|.... +...|..-+.|.+.++++.|.+.|..
T Consensus 287 ~~~~~~~~v~-v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~ 353 (359)
T PRK06545 287 IPSFYDLYVD-VPDEPGVIARVTAILGEEGISIENLRILEAR--EDIHGVLQISFKNEEDRERAKALLEE 353 (359)
T ss_pred CCcceEEEEe-CCCCCCHHHHHHHHHHHcCCCeecceeeecc--CCcCceEEEEeCCHHHHHHHHHHHHh
Confidence 3455677774 444 334467777777777 68888887664 33467889999999999999887643
No 267
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=35.24 E-value=79 Score=21.22 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=27.1
Q ss_pred HHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 89 KHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 89 ~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
..+.+||.|..+.=- ..||+ .|-+.++|+..++.|....|
T Consensus 15 r~L~kfG~i~Y~Skk--------~kYvv-lYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 15 RQLRKFGDIHYVSKK--------MKYVV-LYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred HhHhhcccEEEEECC--------ccEEE-EEECHHHHHHHHHHHhcCCC
Confidence 356789998776321 23554 46688999999988876543
No 268
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=35.18 E-value=88 Score=20.84 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=34.7
Q ss_pred cCCCCCCcHHHHHHHhh-hcCCc-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 76 TGLSTRVTERDLEKHFS-KEGKV-ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 76 ~nLp~~~t~~~L~~~f~-~~G~i-~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
-.++..++.++|...+. .|+.. ..+.|..... -| -+|.+.+-++.+.|++.++..
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~----dg-D~V~i~sd~Dl~~a~~~~~~~ 72 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDE----DG-DLVTISSDEDLQEAIEQAKES 72 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEET----TS-SEEEESSHHHHHHHHHHHHHC
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCC----CC-CEEEeCCHHHHHHHHHHHHhc
Confidence 45677788888876664 45542 2333322111 12 589999999999999976543
No 269
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=34.38 E-value=1.1e+02 Score=26.88 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=22.8
Q ss_pred CEEEecC--CCCCCcHHHHHHHhhhc-CCceEEEEe
Q 026421 71 NTLYVTG--LSTRVTERDLEKHFSKE-GKVASCFLV 103 (238)
Q Consensus 71 ~~l~V~n--Lp~~~t~~~L~~~f~~~-G~i~~v~i~ 103 (238)
.||||.- |...++.++|.++|..| +.-..|.|+
T Consensus 210 ~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~ 245 (313)
T PRK11863 210 VTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVA 245 (313)
T ss_pred EEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEe
Confidence 4677764 57788999999999755 444445443
No 270
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=34.35 E-value=80 Score=28.81 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=41.4
Q ss_pred CCCEEEecCCCCC-----CcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEE---EEeCCHHHHHHHHHHhCC
Q 026421 69 PGNTLYVTGLSTR-----VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAF---VTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 69 ~~~~l~V~nLp~~-----~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~af---V~f~~~e~A~~Al~~l~g 134 (238)
.+.+|.|.|++.. .+.++|.+++..+.....|.|+.| .+.+| -.+.+++.....|+.++.
T Consensus 267 ~gV~IlLENmag~g~~lG~~~eeL~~Iid~v~~~~rlGvCLD------TcHafaAGydl~t~e~~~~~l~~f~~ 334 (413)
T PTZ00372 267 KSVIIVLENTAGQKNSVGSKFEDLRDIIALVEDKSRVGVCLD------TCHLFAAGYDIRTKESFDKVMKEFDE 334 (413)
T ss_pred CCCEEEEecCCCCCCcccCCHHHHHHHHHhcCCcCCeEEEEE------HHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3577999998762 468899999998876567778877 23444 233566777777776543
No 271
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=34.21 E-value=1.1e+02 Score=28.26 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=34.8
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhc---CCceEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKE---GKVASCFLVVEPRTRISRGFAFV-TMDGVEDAERCIK 130 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~---G~i~~v~i~~~~~tg~~~g~afV-~f~~~e~A~~Al~ 130 (238)
++|.|..||..++.++|.+.+... ++|..|.-+.+.. ....++.|| ++.....++..++
T Consensus 233 ~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des-~~~~~vrivI~lk~~~~~~~~~~ 295 (445)
T smart00434 233 NTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDES-HDRTGVRIVIELKRGAMAEVVLN 295 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhcc-CCCCceEEEEEECCCcCHHHHHH
Confidence 689999999999998888765542 4454443333322 112446554 5554444444444
No 272
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=34.04 E-value=45 Score=23.34 Aligned_cols=50 Identities=30% Similarity=0.420 Sum_probs=26.6
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhh-cCCceEEEEeecCCCCCcceEEEEEeCC
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSK-EGKVASCFLVVEPRTRISRGFAFVTMDG 121 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~-~G~i~~v~i~~~~~tg~~~g~afV~f~~ 121 (238)
...-|||++++..+-+.-.+.+.+. .+. -.+.|+....+ ..||+|.++..
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~~~--e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSSNT--CPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeCCC--CCCcEEEecCC
Confidence 4567999999887655433333333 222 12223322222 35788887754
No 273
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=33.77 E-value=1.7e+02 Score=20.62 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=44.6
Q ss_pred cCCCCCCcHHHHHHH----------hhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 76 TGLSTRVTERDLEKH----------FSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 76 ~nLp~~~t~~~L~~~----------f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
-+||.++..+++.++ ++.-|++..+.-+ .|.-..+++..-++.++....|..|.=+.+. +|.|.
T Consensus 8 V~~P~~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWRv----~G~~~n~sifdv~s~~eLh~iL~sLPL~p~m--~i~Vt 81 (90)
T TIGR03221 8 VNLPVDMPAEKAAAIKAREKAYAQELQREGKWRHLWRV----AGEYANYSIFDVESNDELHTLLSGLPLFPYM--DIEVT 81 (90)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHhCCceEEEEEe----cCCceeEEEEEcCCHHHHHHHHHhCCCCcce--EeEEE
Confidence 378998888776654 3456888888765 3555668888888888888888776655443 44444
No 274
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=33.48 E-value=1.6e+02 Score=24.72 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=30.4
Q ss_pred CCCCEEEecCCCCCC--cHHHHHHHhhhcCC-c---eEEEEeecCCCCCcceEEEEEeC
Q 026421 68 NPGNTLYVTGLSTRV--TERDLEKHFSKEGK-V---ASCFLVVEPRTRISRGFAFVTMD 120 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~--t~~~L~~~f~~~G~-i---~~v~i~~~~~tg~~~g~afV~f~ 120 (238)
+.+..|+|.-|..+. |..+|+.+|.++|- + -.|.++.+. .++|+|.
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 92 PGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred CCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 346678888887644 67899999999874 2 234555443 4666664
No 275
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=33.16 E-value=83 Score=24.42 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=34.6
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERC 128 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~A 128 (238)
.+||++.-+..--+.--..+|+.|- +|..|.+.........+....|.+....+.+++
T Consensus 88 l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 88 LSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 4677776544444444467888885 788888877654233444555665555444443
No 276
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=32.70 E-value=1.5e+02 Score=19.56 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=28.1
Q ss_pred HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 85 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 85 ~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
.+|.+++.++| +.-+.|. . +| .-++.|+.+.+.+.|+++++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-G--sG-~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-G--SG-GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-T--TS-SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-C--CC-CCCeEEEEECCHHHHHHHHHHHH
Confidence 45666777888 3334443 1 11 13578888889999888887663
No 277
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.36 E-value=1.2e+02 Score=19.98 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=24.5
Q ss_pred CCCCCC-cHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeC
Q 026421 77 GLSTRV-TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMD 120 (238)
Q Consensus 77 nLp~~~-t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~ 120 (238)
|.|..+ --.||-.+.-.|| .|..-.+..| -.+|||.|-
T Consensus 6 nCPDktGLgcdlcr~il~fGl~i~rgd~sTD------GkWCyiv~w 45 (69)
T cd04894 6 NCPDKTGLGCDLCRIILEFGLNITRGDDSTD------GRWCYIVFW 45 (69)
T ss_pred eCCCccCcccHHHHHHHHhceEEEecccccC------CcEEEEEEE
Confidence 455433 3457878888888 4555566555 239999985
No 278
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=32.24 E-value=99 Score=25.22 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=35.7
Q ss_pred CCcHHHHHH---HhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 81 RVTERDLEK---HFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 81 ~~t~~~L~~---~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
.|++++|.. .+..||. . ..|+.|..++...-+.|+.=.+.+.+..|++.+....+...
T Consensus 38 ~i~~~~lk~F~k~AkKyGV-~-yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~~ 98 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYGV-D-YAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKKE 98 (204)
T ss_pred ecCHhhHHHHHHHHHHcCC-c-eEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhhh
Confidence 345555554 4567774 3 33455655554454566666788888999987766655433
No 279
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=32.18 E-value=3.3e+02 Score=23.69 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=39.8
Q ss_pred CCCEEEecCCCCCCcHHHH-HHH---hhhcC----CceEEEEeecCC--CCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 69 PGNTLYVTGLSTRVTERDL-EKH---FSKEG----KVASCFLVVEPR--TRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L-~~~---f~~~G----~i~~v~i~~~~~--tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
.+..|.|. +...+.+++| .+. +..-+ .|+.|.|+...+ ..-++.||+++|-+...|...++.|..
T Consensus 139 ATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 139 ATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred cceEEEEE-ecCccchhHHHHHhhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 45667664 3344544443 222 22223 356677775443 234578999999999999988887753
No 280
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=32.14 E-value=1.4e+02 Score=27.47 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=40.8
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcC----CceEEEEeecCCCCC--------cceEEEEEeCCHHHHHHHHHHhCC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEG----KVASCFLVVEPRTRI--------SRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G----~i~~v~i~~~~~tg~--------~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
+.+|.+.+=-+-++.+.|++++.... .+.-+.+..+..+|. ..-.++||.++..++++.|..+|.
T Consensus 97 g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNt 173 (460)
T COG1207 97 GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINT 173 (460)
T ss_pred CcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEee
Confidence 45777777677889999997776552 232333333322321 123688999988888887776554
No 281
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=32.09 E-value=1e+02 Score=18.33 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=20.4
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 104 VEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 104 ~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
.+..+|+.+-..---|.+..+|++++..|.
T Consensus 9 ~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~ 38 (46)
T PF14657_consen 9 YDDETGKRKQKTKRGFKTKKEAEKALAKIE 38 (46)
T ss_pred EECCCCCEEEEEcCCCCcHHHHHHHHHHHH
Confidence 455567655444444999999999887653
No 282
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=31.67 E-value=1e+02 Score=22.02 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=28.6
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG 121 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~ 121 (238)
...-|||++++..+-+.-.+.+.+.++. -.+.|+.... . ..||+|.++..
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~-~-eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATN-T-ESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCC-C-CCCcEEEecCC
Confidence 4567999998887765544444444433 2233333222 2 24899988764
No 283
>PLN02707 Soluble inorganic pyrophosphatase
Probab=31.66 E-value=46 Score=28.44 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=24.8
Q ss_pred HHHHHHhhhcCCceEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHHHhC
Q 026421 85 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFV-TMDGVEDAERCIKYLN 133 (238)
Q Consensus 85 ~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV-~f~~~e~A~~Al~~l~ 133 (238)
++|+++|..|-.... +. .+-|+|+ +|.+.+.|.+.|+..+
T Consensus 208 ~~I~~fF~~YK~~eG-K~--------~n~~~~~~~~~~~~~A~~vI~e~~ 248 (267)
T PLN02707 208 TAIRDWFRDYKIPDG-KP--------ANKFGLDNKPMDKDYALKVIEETN 248 (267)
T ss_pred HHHHHHHHHhcCCCC-Cc--------eeeccccCCcCCHHHHHHHHHHHH
Confidence 677778877743221 00 1235665 7889999988887543
No 284
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=31.55 E-value=1.6e+02 Score=27.24 Aligned_cols=60 Identities=25% Similarity=0.306 Sum_probs=35.9
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhc---CCceEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKE---GKVASCFLVVEPRTRISRGFAFV-TMDGVEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~---G~i~~v~i~~~~~tg~~~g~afV-~f~~~e~A~~Al~~l 132 (238)
++|.|..||..++.++|.+.+... +++..|.=+.|..+. .++.|| ++.....++..++.|
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~--~~vrivI~lk~~~~~~~~~~~L 289 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDR--EGIRFVIELKRGAMAEVVLNGL 289 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCC--CceEEEEEECCCccHHHHHHHH
Confidence 689999999999998888766533 344344334443332 356654 555544455444433
No 285
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=31.37 E-value=59 Score=21.34 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=23.8
Q ss_pred CcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEE
Q 026421 82 VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFV 117 (238)
Q Consensus 82 ~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV 117 (238)
.-+.+|+.+|-+--+|+++.|+..+.-. +|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 3456677788787889999888776544 445555
No 286
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=31.33 E-value=65 Score=29.13 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=38.0
Q ss_pred cCCCCCCcHHHHHHHhh----hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 026421 76 TGLSTRVTERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 129 (238)
Q Consensus 76 ~nLp~~~t~~~L~~~f~----~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al 129 (238)
.+|-.+-|--+|+++|- ..|.|+.|.|+..+. -++...||+-.++.+++++++
T Consensus 230 ~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~k-pksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 230 SSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPK-PKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred hhhcccCccccchhheecCCceeeEEeeEEEeecCC-CcceeEEEEccccHHHHHHHH
Confidence 34555667778999984 457888888876643 334568999988888877754
No 287
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=31.33 E-value=1.3e+02 Score=22.90 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=24.4
Q ss_pred CCcHHHHHHHhhh-cC-CceEEEEe----ecCCCCCcceEEEEEeCCHHHHHH
Q 026421 81 RVTERDLEKHFSK-EG-KVASCFLV----VEPRTRISRGFAFVTMDGVEDAER 127 (238)
Q Consensus 81 ~~t~~~L~~~f~~-~G-~i~~v~i~----~~~~tg~~~g~afV~f~~~e~A~~ 127 (238)
..+..+|.+.+.+ |+ .-.++.|+ .....+.+.|||.| |++.+.|.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5677888776654 44 22222222 22234556677765 666655443
No 288
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=31.29 E-value=19 Score=22.86 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=18.7
Q ss_pred cceEEEEEeCC-HHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 111 SRGFAFVTMDG-VEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 111 ~~g~afV~f~~-~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
.+|||||...+ .++.--.-..|++ -++|-.|.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEec
Confidence 37899999987 2222222233443 4456666776655
No 289
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=31.28 E-value=1.9e+02 Score=22.94 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHhCCCeeCC
Q 026421 121 GVEDAERCIKYLNQSVLEG 139 (238)
Q Consensus 121 ~~e~A~~Al~~l~g~~i~g 139 (238)
+.+.|..||.. -...|-.
T Consensus 141 ~~~~AkeAlr~-A~~KLP~ 158 (172)
T TIGR00279 141 NFDVAKEALRR-AAMKFPV 158 (172)
T ss_pred CHHHHHHHHHH-HhccCCC
Confidence 55888888883 3444443
No 290
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=31.26 E-value=61 Score=24.57 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=20.4
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 111 SRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 111 ~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
..||.||++...++...+|..+.|.
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCE
Confidence 6899999999877778888767664
No 291
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=31.10 E-value=2.2e+02 Score=21.32 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHh-----hhcCCc----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 80 TRVTERDLEKHF-----SKEGKV----ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 80 ~~~t~~~L~~~f-----~~~G~i----~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..++..+|++++ .-||.+ ....++..... ...|..=+.=...+.|.+||..+. .++|+.|.|..
T Consensus 27 ~~i~~~~l~~~I~~s~l~llG~~gta~~~~~lv~~~~~-t~~GIvrc~R~~~~~v~aAL~l~~--~~~g~rv~I~~ 99 (124)
T COG1369 27 EEITRGELVRLIRRSLLSLLGDVGTAKANPRLVKYYFS-TGTGIVRCRREYVDLVRAALMLAR--EVNGKRVIIVV 99 (124)
T ss_pred ccCChhHHHHHHHHHHHHHcCcccccccceeEEEEecc-CCceEEEEechhHHHHHHHHHHHH--HhCCceEEEEE
Confidence 366777765543 344543 23344332221 123333344456777888887654 66777666654
No 292
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=30.93 E-value=1.2e+02 Score=18.06 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=27.3
Q ss_pred cHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEE--EEeCCHHHHHHHHHHhCC
Q 026421 83 TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAF--VTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 83 t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~af--V~f~~~e~A~~Al~~l~g 134 (238)
...+|.++|.+++ .|..+.+.... .+ ..... +...+..+....++.|..
T Consensus 11 ~l~~i~~~l~~~~~~i~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 62 (71)
T cd04876 11 LLADITTVIAEEKINILSVNTRTDD-DG--LATIRLTLEVRDLEHLARIMRKLRQ 62 (71)
T ss_pred HHHHHHHHHHhCCCCEEEEEeEECC-CC--EEEEEEEEEECCHHHHHHHHHHHhC
Confidence 4567888898886 45555554321 01 11122 333566677777776654
No 293
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=30.69 E-value=1.3e+02 Score=25.46 Aligned_cols=52 Identities=12% Similarity=0.214 Sum_probs=31.5
Q ss_pred EEEecCCCC---CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHH
Q 026421 72 TLYVTGLST---RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 123 (238)
Q Consensus 72 ~l~V~nLp~---~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e 123 (238)
-|.|.+||. .+...+|.++|..-|.-..|.|+.+..-|.-+.-.|.+...+.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK 57 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEK 57 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHH
Confidence 367889997 4567889999998875335666655433333333344443333
No 294
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.60 E-value=1.9e+02 Score=20.16 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=28.8
Q ss_pred EecCCCCC-CcHHHHHHHhhhcC-CceEEEEeecCCCCCcce-EEEEEeCC--HHHHHHHHHHhC
Q 026421 74 YVTGLSTR-VTERDLEKHFSKEG-KVASCFLVVEPRTRISRG-FAFVTMDG--VEDAERCIKYLN 133 (238)
Q Consensus 74 ~V~nLp~~-~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g-~afV~f~~--~e~A~~Al~~l~ 133 (238)
+|-.|+.. -.-.+|.++|+.+| .+..|. .-+....... +-||+|+- .+..++||+.|.
T Consensus 17 lif~l~~~pGsL~~vL~~Fa~~~INLt~Ie--SRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~ 79 (90)
T cd04931 17 LIFSLKEEVGALAKVLRLFEEKDINLTHIE--SRPSRLNKDEYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEE--eccCCCCCceEEEEEEEEcCCCHHHHHHHHHHH
Confidence 33344442 23456667777776 344443 2222222222 34677763 345566777664
No 295
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=30.39 E-value=1.1e+02 Score=17.19 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=27.0
Q ss_pred cHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 83 TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 83 t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
...+|..+|..++ .|..+.+..... ......+|.+......+.+++.|
T Consensus 11 ~l~~i~~~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 11 LLAKVLSVLAEAGINITSIEQRTSGD--GGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred hHHHHHHHHHHCCCcEEEEEeEEcCC--CCeEEEEEEEechHHHHHHHHHh
Confidence 4567777787776 455555433221 11334556666655666666654
No 296
>PRK12450 foldase protein PrsA; Reviewed
Probab=30.38 E-value=1.1e+02 Score=26.54 Aligned_cols=39 Identities=10% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 81 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 81 ~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
.+|+++|+.+|..|-+ .+. ..+|.|.+.+.|+.+++.|.
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~------------~~~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMT------------AEIMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCCHHHHHHHHHHhCc--cce------------eEEEEeCCHHHHHHHHHHHH
Confidence 4799999999998732 111 23577889999999999885
No 297
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=30.27 E-value=43 Score=28.96 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=20.3
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCc
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKV 97 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i 97 (238)
.+.|.|||+.++...|..++.....+
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~ 128 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLF 128 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCC
Confidence 47789999999999988888643333
No 298
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.98 E-value=1.5e+02 Score=18.76 Aligned_cols=52 Identities=8% Similarity=-0.010 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEE----eCCHHHHHHHHHHhCCC
Q 026421 80 TRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVT----MDGVEDAERCIKYLNQS 135 (238)
Q Consensus 80 ~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~----f~~~e~A~~Al~~l~g~ 135 (238)
..-.-.+|..+|..++ .|..+...... . .+++.+. -.+.+..+++++.|+..
T Consensus 10 ~~g~l~~i~~~l~~~~i~I~~~~~~~~~-~---~~~~~~~i~~~~~~~~~l~~~i~~L~~~ 66 (79)
T cd04881 10 KPGVLAKITGILAEHGISIESVIQKEAD-G---GETAPVVIVTHETSEAALNAALAEIEAL 66 (79)
T ss_pred CCcHHHHHHHHHHHcCCCeEEEEEcccC-C---CCceeEEEEEccCCHHHHHHHHHHHHcC
Confidence 3345677888888887 45555442211 1 1233332 24566777778777654
No 299
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=29.59 E-value=63 Score=24.30 Aligned_cols=34 Identities=21% Similarity=0.006 Sum_probs=27.2
Q ss_pred EEEecCCCCC-CcHHHHHHHhhhcCCceEEEEeec
Q 026421 72 TLYVTGLSTR-VTERDLEKHFSKEGKVASCFLVVE 105 (238)
Q Consensus 72 ~l~V~nLp~~-~t~~~L~~~f~~~G~i~~v~i~~~ 105 (238)
-|.|.|||.. .+++-|+++.+.+|++..+.....
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 3667899985 677888999999999998876543
No 300
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=29.59 E-value=50 Score=27.78 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.1
Q ss_pred CCEEEecCCCCCCcHHHHHHHhh
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFS 92 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~ 92 (238)
...++|+|||..++..-|.+++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45788999999999999998887
No 301
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=29.58 E-value=1.1e+02 Score=23.07 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 84 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 84 ~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
|.+|+..|- |.-+..+.++... ....+-+..+.+.. ...+|..|.+..+.+++|.|..-.
T Consensus 2 e~~lkAa~l-~nf~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAYL-YNFAKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHHH-HHhHhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 455555431 1223334444332 12335555565544 445677788899999999997653
No 302
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=29.28 E-value=1.5e+02 Score=24.12 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=33.4
Q ss_pred CcHHHHHHHhhhcCC---ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 026421 82 VTERDLEKHFSKEGK---VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 138 (238)
Q Consensus 82 ~t~~~L~~~f~~~G~---i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~ 138 (238)
.+.+++.++...+|. |...+|+.. |..++=+...-.++++|..+.+.|=|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~G---gRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAG---GRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSS---TTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeec---CcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467788888877764 344444322 333432333345889999998888888775
No 303
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.25 E-value=87 Score=24.84 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=27.9
Q ss_pred ceEEEEEeCC----HHHHHHHHHHhCCCeeCCeEEEEEeccCCCCCCC
Q 026421 112 RGFAFVTMDG----VEDAERCIKYLNQSVLEGRYITVERSRRKRPRTP 155 (238)
Q Consensus 112 ~g~afV~f~~----~e~A~~Al~~l~g~~i~g~~l~V~~a~~~~~~~~ 155 (238)
.|+-.|+|-- .+....|+..++...+...-|.|+.+.|+.+...
T Consensus 109 egWEHIEiVlP~~peel~~~~~~l~~~~~l~~~gi~vk~ssp~ge~er 156 (185)
T COG3102 109 EGWEHIEIVLPGDPEELNARALALLNDEFLWELGISVKLSSPQGEHER 156 (185)
T ss_pred cCceeEEEEcCCChHHHHHHHHhhcchhhcccCceEEEecCCCCcccc
Confidence 3555666532 3445567777776666655588888887765543
No 304
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=29.08 E-value=73 Score=27.40 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=26.8
Q ss_pred CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 81 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 81 ~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
.+.+++|+.+++..-. ..++.| -|||+|.-.+.+..++++..+.
T Consensus 176 ~ik~~di~KiLe~p~n---glVVvD--------EAYidFsg~~S~~~lV~kYpNL 219 (375)
T KOG0633|consen 176 IIKEDDILKILEMPDN---GLVVVD--------EAYIDFSGVESRMKLVKKYPNL 219 (375)
T ss_pred cccHHHHHHHHhCCCC---cEEEEe--------eeeEeeccccccchHhHhCCce
Confidence 3455666666665531 122222 5899998877777777766553
No 305
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=29.07 E-value=95 Score=21.53 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=24.3
Q ss_pred EEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
|.+++|.++-.. +++-.+++-..|-.|.|. |..+ .|||.|.. .+...++++.|....+.-+.|+|+.
T Consensus 3 lkfg~It~eeA~-~~QYeLsk~~~vyRvFiN-----gYar-~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTveE 73 (88)
T PF11491_consen 3 LKFGNITPEEAM-VKQYELSKNEAVYRVFIN-----GYAR-NGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVEE 73 (88)
T ss_dssp EE--S-TTTTTH-HHHHTTTTTTTB-----------TTSS---EEE--B-S-SHHHH---HHHTTT-SS-------SS
T ss_pred cccCCCCHHHHH-HHHHHhhcccceeeeeec-----cccc-ceEEEECcccCCHHHHHHHHHhcChhheeeccccHHH
Confidence 455677654322 223334444555555443 2223 68999964 5778888898988888888887753
No 306
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=29.06 E-value=55 Score=27.73 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=18.6
Q ss_pred EEEecCCCCCCcHHHHHHHhhh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSK 93 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~ 93 (238)
.++|+|||+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 6779999999998888888754
No 307
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.03 E-value=1.1e+02 Score=19.27 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHhCCCe
Q 026421 121 GVEDAERCIKYLNQSV 136 (238)
Q Consensus 121 ~~e~A~~Al~~l~g~~ 136 (238)
..+++++|+..|+...
T Consensus 47 ~~~~~~~a~~~Lh~~f 62 (64)
T cd04917 47 KEEDKDEVVQRLHSRL 62 (64)
T ss_pred eHHHHHHHHHHHHHHH
Confidence 4567788888776543
No 308
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=28.89 E-value=1.4e+02 Score=24.42 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=24.8
Q ss_pred EEEecCCCCCCcHHHH--------HHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC
Q 026421 72 TLYVTGLSTRVTERDL--------EKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG 121 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L--------~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~ 121 (238)
.=||-.||.+++.++- +++|..+|.+..+-|..+.. ..-.|.|.|.+
T Consensus 69 re~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~---~NpHaHim~t~ 123 (216)
T PF03389_consen 69 REFEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGP---RNPHAHIMFTT 123 (216)
T ss_dssp EEEEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETT---TEEEEEEEE--
T ss_pred eeeeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCC---CCCEEEEEeec
Confidence 3456689999887653 33455568888888775433 24467777754
No 309
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=28.89 E-value=1.8e+02 Score=20.54 Aligned_cols=67 Identities=16% Similarity=0.318 Sum_probs=41.2
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhh-cCC-ceEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSK-EGK-VASCFLVVEPRT-RISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~-~G~-i~~v~i~~~~~t-g~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
+.+++||+ +|-..++-..|.++|+. .|+ ...+.++.+-.. ..-+.-+=+.|++-++.++.++++-|.
T Consensus 32 qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 32 QDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred CCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 34556654 68888888899988864 453 445555544211 011223456788888888888876553
No 310
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=28.84 E-value=1.7e+02 Score=19.17 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCC-CCCcHHHHHHHhh-hcCCc-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 77 GLS-TRVTERDLEKHFS-KEGKV-ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 77 nLp-~~~t~~~L~~~f~-~~G~i-~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
.++ ..++.++|.+.+. .|+.. ..+.|....+ .| .+|...+.++.+.|++.+.
T Consensus 15 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~----e~-d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 15 VVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDE----DG-DLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCC----CC-CEEEeCCHHHHHHHHHHHh
Confidence 345 7888888876653 44432 2333322211 22 6899999999999999664
No 311
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=28.72 E-value=2.1e+02 Score=22.54 Aligned_cols=27 Identities=11% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 120 DGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 120 ~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
.+.++.++|++.++.....|+.+-|.-
T Consensus 90 Ps~~~i~~aVeFi~k~asLGktvYVHC 116 (183)
T KOG1719|consen 90 PSLENIQKAVEFIHKNASLGKTVYVHC 116 (183)
T ss_pred CCHHHHHHHHHHHHhccccCCeEEEEe
Confidence 467889999999998888899887754
No 312
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=28.66 E-value=1.8e+02 Score=22.14 Aligned_cols=24 Identities=8% Similarity=0.237 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 121 GVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 121 ~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
+.++++.|..+|+ .+++..|.=..
T Consensus 82 ~F~~~e~A~~Al~--~lng~~i~Gr~ 105 (144)
T PLN03134 82 NFNDEGAATAAIS--EMDGKELNGRH 105 (144)
T ss_pred EECCHHHHHHHHH--HcCCCEECCEE
Confidence 3455566666554 34555544333
No 313
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=28.52 E-value=2.5e+02 Score=25.32 Aligned_cols=65 Identities=9% Similarity=0.064 Sum_probs=41.3
Q ss_pred CcHHHHHHHhhhcC--C-ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC----CeeCCeEEEEEeccC
Q 026421 82 VTERDLEKHFSKEG--K-VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ----SVLEGRYITVERSRR 149 (238)
Q Consensus 82 ~t~~~L~~~f~~~G--~-i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g----~~i~g~~l~V~~a~~ 149 (238)
.+.+++..+..++| + |++.++... |..|.=+...-++.++|.++.+.|=| +.+.|+.+..-+..+
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~aG---GRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee 97 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHAG---GRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEE 97 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeeec---CccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEe
Confidence 46778888888886 2 344444432 33343334444689999998888877 777787766555443
No 314
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=28.32 E-value=76 Score=24.50 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=19.1
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhc
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKE 94 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~ 94 (238)
..+.|.|+|..++.+.|..++...
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~~ 101 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEEP 101 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhcC
Confidence 457789999999888888887643
No 315
>PRK12378 hypothetical protein; Provisional
Probab=28.32 E-value=1.9e+02 Score=24.18 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=26.1
Q ss_pred CCCCEEEecCCCCCC--cHHHHHHHhhhcCC-c---eEEEEeec
Q 026421 68 NPGNTLYVTGLSTRV--TERDLEKHFSKEGK-V---ASCFLVVE 105 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~--t~~~L~~~f~~~G~-i---~~v~i~~~ 105 (238)
+.+..|+|.-|..+. |..+|+.+|.++|- + -.|.++.+
T Consensus 89 PgGvaiiVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~Fe 132 (235)
T PRK12378 89 PNGVMVIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFD 132 (235)
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeeee
Confidence 346778888887744 67899999999963 3 23555544
No 316
>CHL00030 rpl23 ribosomal protein L23
Probab=28.09 E-value=1.8e+02 Score=20.55 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=24.1
Q ss_pred EEEecCCCCCCcHHHHHHHhhh-cC-CceEEEEeec
Q 026421 72 TLYVTGLSTRVTERDLEKHFSK-EG-KVASCFLVVE 105 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~~ 105 (238)
..|+.-++..++..+|+++++. |+ .|..|..+..
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 3556667889999999999987 44 5666655443
No 317
>PLN02373 soluble inorganic pyrophosphatase
Probab=28.03 E-value=75 Score=25.65 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=25.6
Q ss_pred HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 84 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 84 ~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.++|+++|..|-.+. + +.+.+..|.+.+.|.++|+..
T Consensus 138 l~~I~~fF~~YK~le----------g--K~v~v~g~~~~~~A~~~I~~~ 174 (188)
T PLN02373 138 LAEIRRFFEDYKKNE----------N--KEVAVNDFLPAEAAIEAIQYS 174 (188)
T ss_pred HHHHHHHHHHhcccC----------C--CeEEeCCccCHHHHHHHHHHH
Confidence 467888898885432 1 335567888888888887643
No 318
>PF05727 UPF0228: Uncharacterised protein family (UPF0228); InterPro: IPR008887 This small family of proteins is currently restricted to Methanosarcina species. Members of this family are about 200 residues in length, except for Q8TMK1 from SWISSPROT that has two copies of this region. Although the function of this region is unknown the pattern of conservation suggests that this may be an enzyme, including multiple conserved aspartate and glutamate residues. The most conserved motif in these proteins is NEL/MEXNE/D, where X can be any amino acid, and is found at the C terminus of these proteins.
Probab=28.01 E-value=1.3e+02 Score=22.52 Aligned_cols=58 Identities=10% Similarity=0.228 Sum_probs=29.7
Q ss_pred CCCC-CCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHH-----HHHHHHHhCCCeeCCeEEEEEe
Q 026421 77 GLST-RVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVED-----AERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 77 nLp~-~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~-----A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
-|+. .+..+.+.+++.++- +|+... +|+|.|.+... -..|+..-|-.+.+...|.|.+
T Consensus 58 ~vSEqai~d~~FL~iL~K~nLqvKKfV------------wCyI~f~dgs~nywIpe~DAirIKnELE~NE~il~V~~ 122 (127)
T PF05727_consen 58 MVSEQAIEDKNFLEILEKYNLQVKKFV------------WCYIRFGDGSKNYWIPEKDAIRIKNELEMNEKILIVYL 122 (127)
T ss_pred EeehhhcCchhHHHHHHhcCcceeEEE------------EEEEEcCCCCcccccchHHHHHHHHHHhcCCcEEEEEe
Confidence 3443 344556778888876 233221 56677644221 1234443344445556666665
No 319
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=27.61 E-value=2.6e+02 Score=23.51 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=27.1
Q ss_pred CCCEEEecCCCCC--CcHHHHHHHhhhcC-Cce---EEEEeecC
Q 026421 69 PGNTLYVTGLSTR--VTERDLEKHFSKEG-KVA---SCFLVVEP 106 (238)
Q Consensus 69 ~~~~l~V~nLp~~--~t~~~L~~~f~~~G-~i~---~v~i~~~~ 106 (238)
.+.-|+|..|..+ =|..+|+.+|.+.| .+- .|.++.++
T Consensus 93 ~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~ 136 (241)
T COG0217 93 GGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDR 136 (241)
T ss_pred CceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEec
Confidence 4678889988774 46789999999886 232 36666554
No 320
>COG0360 RpsF Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]
Probab=27.41 E-value=2.5e+02 Score=20.57 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=36.2
Q ss_pred CCCCCcHHHHHHHhhhc--------CCceEEEEeecC-----CC-CCcceEEEEEeCCHHHHHHHHHH---hCCCeeCCe
Q 026421 78 LSTRVTERDLEKHFSKE--------GKVASCFLVVEP-----RT-RISRGFAFVTMDGVEDAERCIKY---LNQSVLEGR 140 (238)
Q Consensus 78 Lp~~~t~~~L~~~f~~~--------G~i~~v~i~~~~-----~t-g~~~g~afV~f~~~e~A~~Al~~---l~g~~i~g~ 140 (238)
|.++++++++..++++| |+|..+..+-.. -. ...--|.++.|.....+.+-|+. +|...|--.
T Consensus 9 v~p~~see~~~~~ve~~~~~l~~~gg~i~~~e~wG~R~LAY~IkK~~~g~Y~l~~f~~~~~~i~Eler~~rin~~VlR~l 88 (112)
T COG0360 9 VRPDLSEEQVAALVEKYKGVLTNNGGEIHKVEDWGKRRLAYPIKKLREGHYVLMNFEAEPAAIAELERLLRINEDVLRHL 88 (112)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEehhhhhhhhcceecccceEEEEEEEEEcCHHHHHHHHHHhccchhhheee
Confidence 45677777766666555 455555321100 00 11124778888877666665552 333344444
Q ss_pred EEEEEec
Q 026421 141 YITVERS 147 (238)
Q Consensus 141 ~l~V~~a 147 (238)
.|++...
T Consensus 89 iik~~~~ 95 (112)
T COG0360 89 IIKVEKA 95 (112)
T ss_pred EEEechh
Confidence 4444443
No 321
>PRK00110 hypothetical protein; Validated
Probab=27.32 E-value=1.8e+02 Score=24.52 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=29.5
Q ss_pred CCCEEEecCCCCCC--cHHHHHHHhhhcCC-c---eEEEEeecCCCCCcceEEEEEeC
Q 026421 69 PGNTLYVTGLSTRV--TERDLEKHFSKEGK-V---ASCFLVVEPRTRISRGFAFVTMD 120 (238)
Q Consensus 69 ~~~~l~V~nLp~~~--t~~~L~~~f~~~G~-i---~~v~i~~~~~tg~~~g~afV~f~ 120 (238)
.+..|+|.-|..+. |..+|..+|.++|- + -.|.++.+. .++|+|.
T Consensus 93 ~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~-------kG~i~~~ 143 (245)
T PRK00110 93 GGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDR-------KGVIVIE 143 (245)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEecc-------ceEEEeC
Confidence 46677787777644 67899999999863 3 235555543 4566664
No 322
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=27.28 E-value=2.2e+02 Score=19.85 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=33.6
Q ss_pred EEecCCCCCCcHHHHHHHh-hhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 73 LYVTGLSTRVTERDLEKHF-SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f-~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
|.+-.||..++-++|.+-+ ..|+.-..+.|....+ | -+|+..+.++.+.||...
T Consensus 13 v~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE-G-----D~iti~sq~DLd~Ai~~a 67 (86)
T cd06408 13 TRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD-G-----DMITMGDQDDLDMAIDTA 67 (86)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC-C-----CCccccCHHHHHHHHHHH
Confidence 3444688888888876544 4555333444433332 3 578888888888887743
No 323
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=27.14 E-value=1.4e+02 Score=26.64 Aligned_cols=50 Identities=10% Similarity=-0.046 Sum_probs=34.2
Q ss_pred HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 026421 84 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 141 (238)
Q Consensus 84 ~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~ 141 (238)
-++|+..|..---+..++...+ --||.|...-+.++-|...++..+.+.+
T Consensus 264 Y~~Le~HF~~~hy~ct~qtc~~--------~k~~vf~~~~el~~h~~~~h~~~~~~~~ 313 (493)
T COG5236 264 YEDLEAHFRNAHYCCTFQTCRV--------GKCYVFPYHTELLEHLTRFHKVNARLSE 313 (493)
T ss_pred HHHHHHHhhcCceEEEEEEEec--------CcEEEeccHHHHHHHHHHHhhcccccCc
Confidence 3566777766555655555544 2378899988888888878887666654
No 324
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=27.07 E-value=78 Score=26.38 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=20.6
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCC
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGK 96 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~ 96 (238)
.+.|+|||..++...|.+++..++.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 4779999999999999999875443
No 325
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=26.97 E-value=1.4e+02 Score=17.51 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=23.4
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEe
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLV 103 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~ 103 (238)
.+.|..-++.-..+.++|.+++..+.+ ..|.++
T Consensus 6 ~a~v~~~~fSgHad~~~L~~~i~~~~p-~~vilV 38 (43)
T PF07521_consen 6 RARVEQIDFSGHADREELLEFIEQLNP-RKVILV 38 (43)
T ss_dssp -SEEEESGCSSS-BHHHHHHHHHHHCS-SEEEEE
T ss_pred EEEEEEEeecCCCCHHHHHHHHHhcCC-CEEEEe
Confidence 345666568889999999999999865 555544
No 326
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.85 E-value=1.8e+02 Score=26.04 Aligned_cols=50 Identities=14% Similarity=0.327 Sum_probs=33.2
Q ss_pred CCcHHHHHHHhhhcC-Cce----EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 81 RVTERDLEKHFSKEG-KVA----SCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 81 ~~t~~~L~~~f~~~G-~i~----~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.+|..+++++|..-= .|. .+.|+ | ++..+.-+-||+..+.+++..||+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~~l~~l-D-q~~lP~~~~~~~~~~~~~v~~aI~~M 56 (363)
T PRK05772 2 KLTVKEVKELFKPKLLPIIWKDNTLTLL-D-QSLLPFETVYVDLKTVEEVALAIRNM 56 (363)
T ss_pred cchHHHHHHHhCCCCceEEecCCEEEEE-e-cCCCCCeEEEEEeCCHHHHHHHHHhC
Confidence 356788899987531 111 12222 2 33455668999999999999999866
No 327
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=26.69 E-value=1.4e+02 Score=25.72 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=28.7
Q ss_pred CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 81 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 81 ~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
.+|+++|+.+|..+.+- + ....|.+.+.+.|+.+++.|..
T Consensus 128 ~Vtd~ei~~~y~~~~~~--~------------~v~hIlv~~~~~A~~v~~~l~~ 167 (298)
T PRK04405 128 KVTNSQLKKAWKSYQPK--V------------TVQHILVSKKSTAETVIKKLKD 167 (298)
T ss_pred CCCHHHHHHHHHHhhhh--E------------EEEEEEecChHHHHHHHHHHHC
Confidence 57999999999876321 1 1455667788889888887643
No 328
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=26.63 E-value=1.3e+02 Score=20.86 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=19.7
Q ss_pred CceEEEEeecCCCCCcceEEEEEeCC
Q 026421 96 KVASCFLVVEPRTRISRGFAFVTMDG 121 (238)
Q Consensus 96 ~i~~v~i~~~~~tg~~~g~afV~f~~ 121 (238)
+|.+|.|..-...+..++||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36777777666668889999999976
No 329
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=26.34 E-value=1.5e+02 Score=21.80 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=35.5
Q ss_pred CCCCCCEEEecCCCCCCcHH---HHHHHh--hhcCCceEEEEeecCCCCCcce-EEEEEeCCHHHHHHHHHHhC
Q 026421 66 TGNPGNTLYVTGLSTRVTER---DLEKHF--SKEGKVASCFLVVEPRTRISRG-FAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~---~L~~~f--~~~G~i~~v~i~~~~~tg~~~g-~afV~f~~~e~A~~Al~~l~ 133 (238)
+...++.+|+..-|..+..+ +|..+| ..=|+|....+...-.+|++.+ -|..++.+.++-+..|..|+
T Consensus 31 dG~tG~A~f~F~~p~~l~~~~~~~ItGM~LiDeEGei~tr~v~aKFvnGkp~~iEa~y~m~s~~~WdRFMRFMe 104 (113)
T PRK13610 31 DGKKGKAVYKFYKPKTITLTNYKSVQRMFLIDSEGVLSTKKIDLSISEDHVKEVKSTYNWNSEEAFERFMRFAS 104 (113)
T ss_pred CCCccEEEEEECCchhcccccccceeeeEEEccCceEEEEeeeEEEEcCCccEEEEEEEECCHHHHHHHHHHHH
Confidence 34456677776555544332 222211 1225554332222223344443 46778889999988887664
No 330
>PRK08577 hypothetical protein; Provisional
Probab=26.32 E-value=2.8e+02 Score=20.67 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=31.1
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEE--EEeCCH-HHHHHHHHHhCC
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAF--VTMDGV-EDAERCIKYLNQ 134 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~af--V~f~~~-e~A~~Al~~l~g 134 (238)
.|.|......-.-.+|..+|..++ .|..+........+ ..++. |+..+. .+...+++.|..
T Consensus 58 ~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~--~~~i~l~vev~~~~~~l~~l~~~L~~ 122 (136)
T PRK08577 58 EIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGE--LAECVIIVDLSKSDIDLEELEEELKK 122 (136)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCC--EEEEEEEEEeCCchhhHHHHHHHHHc
Confidence 344444334345567888888886 45555543332111 12233 344554 555666666644
No 331
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=26.04 E-value=1.3e+02 Score=25.75 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=29.9
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhh-hcCCceEEEEeecCCCCCcce
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFS-KEGKVASCFLVVEPRTRISRG 113 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~tg~~~g 113 (238)
..+.+..||+-+|+..++++|. .||. .+-..+.-.|..+.+++.-+|
T Consensus 17 ~LE~G~VL~fP~l~F~l~~~E~-~fL~p~~~d~k~KNIs~~p~~~~l~G 64 (281)
T PF11004_consen 17 ALEQGKVLYFPQLRFPLSPEER-AFLDPAIVDPKRKNISYRPNTGSLRG 64 (281)
T ss_pred HhhCCCEEEeCCCCCCCChhHH-hhcChhhhCCCCCceeecCCCCceec
Confidence 3467899999999999998887 4443 332222223444555565555
No 332
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=25.85 E-value=2.4e+02 Score=27.42 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=36.3
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhh---cCCceEEEEeecCCCCCcceEEE-EEeCCHHHHHHHHHHh
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSK---EGKVASCFLVVEPRTRISRGFAF-VTMDGVEDAERCIKYL 132 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~---~G~i~~v~i~~~~~tg~~~g~af-V~f~~~e~A~~Al~~l 132 (238)
.++|.|..||..++.+.|.+.+.. -|+|. |.-+.|. +. .++.| |++.....++..+..|
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~-s~--~~v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDY-TA--ENVEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeC-CC--CcEEEEEEECCCCCHHHHHHHH
Confidence 368999999999999888776543 35555 5445553 33 23444 4565554555555444
No 333
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=25.57 E-value=1.6e+02 Score=20.49 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=17.8
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCC
Q 026421 113 GFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 113 g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
||.||++.-.+++..+|..+.+.
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCCc
Confidence 89999998766667777766664
No 334
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=25.49 E-value=1.9e+02 Score=18.59 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=30.8
Q ss_pred HHHHHhhhcCCceEEEEeecC--CCCCcceEEEEEeCCHHHHHHHHH-HhCCCeeCC
Q 026421 86 DLEKHFSKEGKVASCFLVVEP--RTRISRGFAFVTMDGVEDAERCIK-YLNQSVLEG 139 (238)
Q Consensus 86 ~L~~~f~~~G~i~~v~i~~~~--~tg~~~g~afV~f~~~e~A~~Al~-~l~g~~i~g 139 (238)
+|++++.++..|.++.++... ..| ..-+|||+. +.++..++|. .|....+-.
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g-~~l~a~vv~-~~~~i~~~~~~~l~~~~~P~ 55 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWG-ERLVAFVVL-DEEEIRDHLRDKLPPYMVPR 55 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTE-EEEEEEEEE-HHHHHHHHHHHHS-GGGS-S
T ss_pred CHHHHHhcCCCccEEEEEEEEccccc-ccceeEEEe-eecccccchhhhCCCcceee
Confidence 578888888888887665433 233 456889988 4444444444 355544443
No 335
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=25.26 E-value=3e+02 Score=24.83 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=31.8
Q ss_pred CcHHHHHHHhhhcCC---ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 82 VTERDLEKHFSKEGK---VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 82 ~t~~~L~~~f~~~G~---i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
.+.+++.++..++|. |.++.+. -...++.-|..+. .+.+++..|.+.|-+..|
T Consensus 26 ~~~~ea~~~a~~lg~p~~VvK~qv~-~g~Rgk~GGV~l~--~~~~e~~~a~~~ll~~~~ 81 (392)
T PRK14046 26 YSPEQAVYRARELGGWHWVVKAQIH-SGARGKAGGIKLC--RTYNEVRDAAEDLLGKKL 81 (392)
T ss_pred CCHHHHHHHHHHcCCCcEEEEeeec-cCCCCcCCeEEEE--CCHHHHHHHHHHHhcchh
Confidence 356777777777764 3444343 1122333445554 488999999887766543
No 336
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=25.20 E-value=1e+02 Score=27.66 Aligned_cols=49 Identities=20% Similarity=0.123 Sum_probs=31.5
Q ss_pred cCCCCCCcHHHHHHHhhhcCC-ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 026421 76 TGLSTRVTERDLEKHFSKEGK-VASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 129 (238)
Q Consensus 76 ~nLp~~~t~~~L~~~f~~~G~-i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al 129 (238)
.....+....+|+.+..-||. |...+ +..| ...|-+|+|.+.+.|...|
T Consensus 8 ~q~hl~Fr~pE~eala~lF~~~i~~sq---~~~t--~~PF~iv~~~s~~~Ar~~~ 57 (421)
T KOG2671|consen 8 AQSHLDFRLPELEALASLFGLQIDESQ---KLHT--TSPFFIVEFESEEIARNLI 57 (421)
T ss_pred ehhhhccchHHHHHHHHHHhhhhhhhh---hhcC--CCceEEEEeCchHHHHHHH
Confidence 334445666788888888873 33222 1111 2459999999999998765
No 337
>PRK14443 acylphosphatase; Provisional
Probab=25.10 E-value=2.2e+02 Score=20.04 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=13.1
Q ss_pred CEEEecCCCCC-------CcHHHHHHHhhh
Q 026421 71 NTLYVTGLSTR-------VTERDLEKHFSK 93 (238)
Q Consensus 71 ~~l~V~nLp~~-------~t~~~L~~~f~~ 93 (238)
-+=||.||+.. -+++.|.+|+..
T Consensus 32 l~G~V~N~~dG~Vei~~qG~~~~l~~f~~~ 61 (93)
T PRK14443 32 ISGTVKNLDDGSVEIHAIAEEENLNKFIDA 61 (93)
T ss_pred CEEEEEECCCCEEEEEEECCHHHHHHHHHH
Confidence 34566776654 345566666543
No 338
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=25.08 E-value=1.9e+02 Score=26.86 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=36.8
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhh---cCCceEEEEeecCCCCCcceEE-EEEeCCHHHHHHHHHHh
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSK---EGKVASCFLVVEPRTRISRGFA-FVTMDGVEDAERCIKYL 132 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~---~G~i~~v~i~~~~~tg~~~g~a-fV~f~~~e~A~~Al~~l 132 (238)
.++|.|..||..++.+.|.+.+.+ -|.|. |.-+.|..+ . ++. .|++.....++..|..|
T Consensus 220 ~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~-~--~v~i~I~Lk~~~~~~~vl~~L 282 (479)
T PRK09630 220 DKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFST-D--LPHIEIKLPKGIYAKDLLRPL 282 (479)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCC-C--CceEEEEECCCCCHHHHHHHH
Confidence 358999999999999888876543 35554 444444322 2 233 35666555666666555
No 339
>PRK12866 YciI-like protein; Reviewed
Probab=24.76 E-value=2.6e+02 Score=19.74 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=19.7
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 113 GFAFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 113 g~afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
++.++++.+.++|++.|+ -+-....|.
T Consensus 50 ~~ii~~a~s~~e~~~~l~-~DPf~~~gl 76 (97)
T PRK12866 50 AVLVFEGDSPAAAEAFAR-ADPYVRNGL 76 (97)
T ss_pred EEEEEEeCCHHHHHHHHH-cCChhhcCC
Confidence 455568899999999888 455555554
No 340
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=24.43 E-value=1.6e+02 Score=26.95 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=35.3
Q ss_pred CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCCCCC
Q 026421 81 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRPR 153 (238)
Q Consensus 81 ~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~~~~ 153 (238)
.++.++|..++.- -.-++|.++.|.. ||--.|... +-...++.++...+.-..|+|-|+..|.-.
T Consensus 242 ~~~~e~L~~ll~F-a~~kniHvI~DEI------ya~sVF~~~-~F~Sv~ev~~~~~~~~~rvHivyslSKD~G 306 (471)
T KOG0256|consen 242 TLSPEELISLLNF-ASRKNIHVISDEI------YAGSVFDKS-EFRSVLEVRKDPHLDPDRVHIVYSLSKDFG 306 (471)
T ss_pred ccCHHHHHHHHHH-HhhcceEEEeehh------hcccccCcc-CceEHHHHhhccccCCCcEEEEEEeccccC
Confidence 4556666655532 2335566666632 444444443 333344444444456677888888877543
No 341
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=24.19 E-value=60 Score=21.20 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=11.0
Q ss_pred cHHHHHHHhhhcCCceEE
Q 026421 83 TERDLEKHFSKEGKVASC 100 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v 100 (238)
|--||++++.+||.++.+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 456899999999977554
No 342
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=24.12 E-value=76 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=24.3
Q ss_pred EeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 118 TMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 118 ~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
.|.-.+.|.+.++.|....|.|+.|+|.-
T Consensus 18 ~~qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 18 IFQCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred ceehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 56667888888889999999999999876
No 343
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=24.08 E-value=2.1e+02 Score=25.09 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=36.5
Q ss_pred CCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 80 TRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 80 ~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
..++.++|+++|..-=++. ... + --..+|=++.+..+|++|++.|... .-..++.|.+.-
T Consensus 139 ~~~~~~el~~~~k~qle~~-----~~~--g-vD~L~fETip~~~EA~a~l~~l~~~-~~~~p~~is~t~ 198 (317)
T KOG1579|consen 139 DNVEFEELYDFFKQQLEVF-----LEA--G-VDLLAFETIPNVAEAKAALELLQEL-GPSKPFWISFTI 198 (317)
T ss_pred cccCHHHHHHHHHHHHHHH-----HhC--C-CCEEEEeecCCHHHHHHHHHHHHhc-CCCCcEEEEEEe
Confidence 4678888999887542111 000 0 1226777888899999999977543 234455555543
No 344
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=23.85 E-value=1.2e+02 Score=20.34 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=16.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCCe
Q 026421 112 RGFAFVTMDGVEDAERCIKYLNQSV 136 (238)
Q Consensus 112 ~g~afV~f~~~e~A~~Al~~l~g~~ 136 (238)
.+..+|.|+..++-++|.+ |.|..
T Consensus 54 ~~~~i~~~~gi~~r~~Ae~-l~g~~ 77 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAEA-LRGCE 77 (84)
T ss_dssp TTEEEEEETT--SHHHHHT-TTT-E
T ss_pred CCEEEEEEcCCCCHHHHHh-hCCCE
Confidence 4589999999999888877 65544
No 345
>PRK14429 acylphosphatase; Provisional
Probab=23.75 E-value=2e+02 Score=19.98 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=11.7
Q ss_pred EEEecCCCCC-------CcHHHHHHHhh
Q 026421 72 TLYVTGLSTR-------VTERDLEKHFS 92 (238)
Q Consensus 72 ~l~V~nLp~~-------~t~~~L~~~f~ 92 (238)
+=||.|++.. -++++|.+|+.
T Consensus 31 ~G~V~N~~dG~Vei~~qG~~~~i~~f~~ 58 (90)
T PRK14429 31 TGYVTNCEDGSVEILAQGSDPAVDNLIA 58 (90)
T ss_pred EEEEEECCCCeEEEEEEeCHHHHHHHHH
Confidence 3456666653 35555666554
No 346
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=23.67 E-value=1.7e+02 Score=21.27 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=13.0
Q ss_pred CCEEEecCCCCCCcHHHHH
Q 026421 70 GNTLYVTGLSTRVTERDLE 88 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~ 88 (238)
...|||++++.....+.|.
T Consensus 6 ~~~l~~g~~~~~~d~~~L~ 24 (139)
T cd00127 6 TPGLYLGSYPAASDKELLK 24 (139)
T ss_pred cCCeEECChhHhcCHHHHH
Confidence 4579999998765555443
No 347
>PTZ00481 Membrane attack complex/ Perforin (MACPF) Superfamily; Provisional
Probab=23.50 E-value=83 Score=28.89 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=19.1
Q ss_pred ecCCCCCCcHHHHHHHhhhcCC
Q 026421 75 VTGLSTRVTERDLEKHFSKEGK 96 (238)
Q Consensus 75 V~nLp~~~t~~~L~~~f~~~G~ 96 (238)
|..||.....++-..||..||.
T Consensus 210 L~~LP~eYd~g~Y~~FIe~YGT 231 (524)
T PTZ00481 210 IDALPEDYQPDVYNEFLNAWGT 231 (524)
T ss_pred HHhcchhcCHHHHHHHHHhcCc
Confidence 5689999999888999999985
No 348
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.40 E-value=3.7e+02 Score=21.09 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=18.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHhC
Q 026421 112 RGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 112 ~g~afV~f~~~e~A~~Al~~l~ 133 (238)
...+||.|+++++|..+++.-.
T Consensus 76 ~~~v~ll~~~p~d~~~lve~gv 97 (159)
T COG3444 76 GQKVFLLFENPQDVLRLVEGGV 97 (159)
T ss_pred CeEEEEEECCHHHHHHHHhcCC
Confidence 5679999999999999998543
No 349
>cd08041 OBF_kDNA_ligase_like The Oligonucleotide/oligosaccharide binding (OB)-fold domain of kDNA ligase-like ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. The mitochondrial DNA of parasitic protozoan is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-de
Probab=23.31 E-value=1.5e+02 Score=19.69 Aligned_cols=40 Identities=8% Similarity=0.079 Sum_probs=25.0
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEE
Q 026421 77 GLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFV 117 (238)
Q Consensus 77 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV 117 (238)
++-..++++++++++. +|.|..|+...-...+..+-=.|+
T Consensus 35 ~vgtG~t~~~r~~~~~-~g~v~~V~y~e~t~~g~lR~P~f~ 74 (77)
T cd08041 35 KIGSGFSDEQRRNPPP-IGSIITYKYQGLTKNGLPRFPVFL 74 (77)
T ss_pred EEcCCCCHHHHhcCCC-CCCEEEEEEEecCCCCcccCCEEE
Confidence 4456678888887764 788888877654444444433343
No 350
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=23.30 E-value=88 Score=24.78 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCCEEEecCCCC--CC-cHHHHHHHhhhcCCceEEEEe
Q 026421 69 PGNTLYVTGLST--RV-TERDLEKHFSKEGKVASCFLV 103 (238)
Q Consensus 69 ~~~~l~V~nLp~--~~-t~~~L~~~f~~~G~i~~v~i~ 103 (238)
.-..+||-+.+. +. ..+.|.+...+||.|..+.+.
T Consensus 20 ~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~ 57 (195)
T PF01762_consen 20 RVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFV 57 (195)
T ss_pred cEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecc
Confidence 346788878777 32 234477788899999877764
No 351
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.21 E-value=2.5e+02 Score=23.37 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=35.6
Q ss_pred CCCEEEecCCCCC-----CcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC---CHHHHHHHHHH
Q 026421 69 PGNTLYVTGLSTR-----VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD---GVEDAERCIKY 131 (238)
Q Consensus 69 ~~~~l~V~nLp~~-----~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~---~~e~A~~Al~~ 131 (238)
.+.+|.|.|++.. .+.++|.+++..+..+..|.++.|. +.+++.-. ++++...+|+.
T Consensus 132 ~gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v~~~~~~g~~lD~------gH~~~~g~d~~~~~~~~~~i~~ 196 (273)
T smart00518 132 KGVVILLETTAGKGSQIGSTFEDLKEIIDLIKELDRIGVCIDT------CHIFAAGYDINTVEGFEKVLEE 196 (273)
T ss_pred CCcEEEEeccCCCCCccCCCHHHHHHHHHhcCCCCCeEEEEEc------cchhhccCCCCCHHHHHHHHHH
Confidence 4567888888642 4677888888887765567777773 23333322 35555555543
No 352
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=23.21 E-value=2.7e+02 Score=22.44 Aligned_cols=73 Identities=12% Similarity=0.033 Sum_probs=35.8
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEE-EeCCHHHH---HHHHHHhCCCeeCCeEEEEEec
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFV-TMDGVEDA---ERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV-~f~~~e~A---~~Al~~l~g~~i~g~~l~V~~a 147 (238)
.|.|.==|..|+-++|.++|-..-.-..+.-. .+.....|.-+ -+.+.++. +++|+.|+.....+.+|.+++.
T Consensus 61 ~V~V~yDp~~iSy~~LL~~Ff~~hDPt~~~~Q---g~D~G~QYRS~If~~~~eQ~~~a~~~~~~~~~~~~~~~~i~Tei~ 137 (186)
T PRK13014 61 AVQITYDPKQVSYENLLQIFFSTHDPTQLNRQ---GPDRGEQYRSAIFYHDEEQKKVAEAYIAQLDEAGIFKKPIVTPIK 137 (186)
T ss_pred EEEEEECCCcCCHHHHHHHHHHhcCCCccCCC---CCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhccccCCCcEEEEe
Confidence 46666667788999998887654222211100 01111234433 34455544 4445555433223455665554
No 353
>PF09250 Prim-Pol: Bifunctional DNA primase/polymerase, N-terminal; InterPro: IPR015330 Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities []. ; PDB: 1RO0_A 1RNI_A 1RO2_A 3M1M_A.
Probab=23.20 E-value=2.4e+02 Score=21.24 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=22.7
Q ss_pred CcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHH
Q 026421 82 VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 123 (238)
Q Consensus 82 ~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e 123 (238)
++.++|..+|..+ .-..|-|+. ...++..|.+...+
T Consensus 32 ~~~~~i~~~~~~~-~~~~igl~~-----~~~gl~viDiD~~~ 67 (163)
T PF09250_consen 32 TDPEQIERWWRRY-PGANIGLVL-----GPSGLVVIDIDNKD 67 (163)
T ss_dssp THHHHHHHHHH---TT-EEEEES-----SGGGEEEEEES-HH
T ss_pred CCHHHHHHHHhhC-CCceEEEEe-----cCCceEEEECCCcc
Confidence 4788899988876 233444444 13679999999888
No 354
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=23.14 E-value=3.8e+02 Score=22.23 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 120 DGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 120 ~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
.+.+...++|+.|... |.+|.|..
T Consensus 166 ~~~~~~~~~l~~~~~~---g~pi~iTE 189 (254)
T smart00633 166 PNIAEIRAALDRFASL---GLEIQITE 189 (254)
T ss_pred CCHHHHHHHHHHHHHc---CCceEEEE
Confidence 4667777777766432 66666653
No 355
>PRK14448 acylphosphatase; Provisional
Probab=23.06 E-value=2.5e+02 Score=19.49 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=10.8
Q ss_pred EEEecCCCCC-------CcHHHHHHHhh
Q 026421 72 TLYVTGLSTR-------VTERDLEKHFS 92 (238)
Q Consensus 72 ~l~V~nLp~~-------~t~~~L~~~f~ 92 (238)
+=||.||+.. -++++|.+|+.
T Consensus 31 ~G~V~N~~dG~Vei~~~G~~~~v~~f~~ 58 (90)
T PRK14448 31 KGYVKNRPDGSVEVVAVGSDAQIAAFRD 58 (90)
T ss_pred EEEEEECCCCCEEEEEEeCHHHHHHHHH
Confidence 3455666653 24555555543
No 356
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=22.89 E-value=1.5e+02 Score=21.05 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=18.5
Q ss_pred CceEEEEeecCCCCCcceEEEEEeCC
Q 026421 96 KVASCFLVVEPRTRISRGFAFVTMDG 121 (238)
Q Consensus 96 ~i~~v~i~~~~~tg~~~g~afV~f~~ 121 (238)
+|++|.|..-...++-++||-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 36667666554457778899999876
No 357
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=22.88 E-value=1.3e+02 Score=28.99 Aligned_cols=59 Identities=14% Similarity=0.298 Sum_probs=39.2
Q ss_pred CCCEEEecCCCCCCcHHH-HHHHhhhcCCceEEEEeecCCCCCcceEEEEEe-----CCHHHHHHHHHHhC
Q 026421 69 PGNTLYVTGLSTRVTERD-LEKHFSKEGKVASCFLVVEPRTRISRGFAFVTM-----DGVEDAERCIKYLN 133 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~-L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f-----~~~e~A~~Al~~l~ 133 (238)
|.+.|...++.+-.+..- +..-+...|.++.+.|+.+- -.+|+.| +..+.++.||+.|.
T Consensus 788 Pp~~i~ac~mDP~LDD~vmfA~kLr~lG~~v~l~vle~l------PHGFLnft~ls~E~~~~~~~CI~rl~ 852 (880)
T KOG4388|consen 788 PPVHIVACAMDPMLDDSVMFARKLRNLGQPVTLRVLEDL------PHGFLNFTALSRETRQAAELCIERLR 852 (880)
T ss_pred CCceEEEeccCcchhHHHHHHHHHHhcCCceeehhhhcC------CccceeHHhhCHHHHHHHHHHHHHHH
Confidence 345666677776555432 34556778999999888663 3567776 45677888888663
No 358
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=22.75 E-value=1.2e+02 Score=26.67 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=23.5
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEG 95 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G 95 (238)
..+.||++|-.+.--++|..++.+++
T Consensus 61 ~~~afiGkvGdD~fG~~l~~~L~~~~ 86 (330)
T KOG2855|consen 61 GRVAFIGKVGDDEFGDDLLDILKQNG 86 (330)
T ss_pred cceeeeecccchhhHHHHHHHHhhCC
Confidence 57999999999988899999999976
No 359
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=22.62 E-value=97 Score=26.71 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=32.4
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcc-eEEEEEe
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISR-GFAFVTM 119 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~-g~afV~f 119 (238)
.-||.++-.+..+...|++++..++.-..-.+..|-.||... |+..+.+
T Consensus 179 ~GlfyGG~~p~wS~~~L~~il~~~~~~~~~v~~iD~HTGlGp~g~~~~i~ 228 (283)
T cd06233 179 DGLFYGGTAPQWSNRTLREILRRHLAGAERVAWIDVHTGLGPWGYGELIF 228 (283)
T ss_pred CccccCCCCccHHHHHHHHHHHHhcccccEEEEEEeCCCCCCCCCCeEEE
Confidence 468899998988999999999887543333344455666554 5443333
No 360
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=22.45 E-value=85 Score=22.99 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHhhhcCCceEEEEe
Q 026421 80 TRVTERDLEKHFSKEGKVASCFLV 103 (238)
Q Consensus 80 ~~~t~~~L~~~f~~~G~i~~v~i~ 103 (238)
..+|+++|.+.|..|-.-.+|.|+
T Consensus 43 ~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 43 SKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred ccCCHHHHHHHHHhhccccCeEEE
Confidence 589999999999999765554443
No 361
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.43 E-value=2e+02 Score=17.73 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=26.2
Q ss_pred cHHHHHHHhhhcC-CceEEEEeecCCC-CCcceEEEEEe--CCHHHHHHHHHHh
Q 026421 83 TERDLEKHFSKEG-KVASCFLVVEPRT-RISRGFAFVTM--DGVEDAERCIKYL 132 (238)
Q Consensus 83 t~~~L~~~f~~~G-~i~~v~i~~~~~t-g~~~g~afV~f--~~~e~A~~Al~~l 132 (238)
.-.+|.++|..+| .|..+.+...... .......+|.| .+.++.+..++.|
T Consensus 11 ~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l 64 (73)
T cd04886 11 QLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAAL 64 (73)
T ss_pred hHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHH
Confidence 4567778888776 6777765543210 11122233333 4555555666655
No 362
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=22.42 E-value=1.7e+02 Score=21.56 Aligned_cols=68 Identities=9% Similarity=0.145 Sum_probs=35.4
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHh-----hhcCCceEEEEeecCCCCCcce-EEEEEeCCHHHHHHHHHHhC
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHF-----SKEGKVASCFLVVEPRTRISRG-FAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f-----~~~G~i~~v~i~~~~~tg~~~g-~afV~f~~~e~A~~Al~~l~ 133 (238)
+...++.+|+-.-|..+..+...++- ..=|+|....+...-.+|++.+ -|..++.+.++-+..|..|+
T Consensus 27 dg~~g~a~f~F~~p~al~~~~~~~itgm~LiDeEGei~tr~v~~KFvnGkp~~iEa~y~m~s~~~WdRFMRFMe 100 (113)
T PRK13612 27 DGRTGQATFYFEQPQALAPETTGEITGMYMIDEEGEIVTREVKAKFVNGKPSALEATYIWKSEQEWDRFMRFME 100 (113)
T ss_pred CCCeeEEEEEECCccccCccccCceeeEEEEccCccEEEEecceEEECCCccEEEEEEEECCHHHHHHHHHHHH
Confidence 34445667776555544332222221 1225544332222222344443 46778899999998887664
No 363
>PF14350 Beta_protein: Beta protein
Probab=22.37 E-value=1.4e+02 Score=26.21 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=24.1
Q ss_pred CcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 026421 82 VTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAE 126 (238)
Q Consensus 82 ~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~ 126 (238)
..+..|..++...+ ...+|.|+.| ++.|.-.+...+.
T Consensus 137 ~~~~~i~~i~~~l~~~~~~~~lilD--------~~~i~~~~~~~~~ 174 (347)
T PF14350_consen 137 DFPSEISRILAALGLSPNEVDLILD--------LGDIRDSDESAVA 174 (347)
T ss_pred hHHHHHHHHHHHcCCCccceEEEEE--------CCccCCcchHHHH
Confidence 44577888888877 6677888877 4555554444333
No 364
>COG4927 Predicted choloylglycine hydrolase [General function prediction only]
Probab=22.31 E-value=99 Score=26.58 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=16.9
Q ss_pred CcceEEEEEe-------CCHHHHHHHHHHhCCCee
Q 026421 110 ISRGFAFVTM-------DGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 110 ~~~g~afV~f-------~~~e~A~~Al~~l~g~~i 137 (238)
+.++++|+.+ ++.+.+++|++.|+...+
T Consensus 168 ~~~~~GF~~~~viRyILE~C~~veqAV~~L~~IP~ 202 (336)
T COG4927 168 RSQGRGFSIILVIRYILETCHQVEQAVKALCRIPV 202 (336)
T ss_pred cccCCCeeEEeEHHHHHHHHhhHHHHHHHHHhCCc
Confidence 3345555544 566677777777766544
No 365
>PRK08655 prephenate dehydrogenase; Provisional
Probab=22.28 E-value=2.3e+02 Score=25.93 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=34.2
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEeecCC---C-CCcceEEE-EEeCCHHHHHHHHHHhCC
Q 026421 78 LSTRVTERDLEKHFSKEGKVASCFLVVEPR---T-RISRGFAF-VTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 78 Lp~~~t~~~L~~~f~~~G~i~~v~i~~~~~---t-g~~~g~af-V~f~~~e~A~~Al~~l~g 134 (238)
+|..++.++|.+++.....|.+|.++--.. - ...+.++| |+|...++++.+.+.|.|
T Consensus 369 v~~~~~~~~i~~~i~~~~~l~~v~~fDvY~g~~i~~g~kSla~r~~~~~~~~~~~~~~~~~~ 430 (437)
T PRK08655 369 FPKGADPEVILDLLDNLKHVFDIEIIDVYSGKQIEEGYLSVTFRITVFGKEDLENVEEILEG 430 (437)
T ss_pred ECCCCCHHHHHHHHhcCCCcceEEEEEEeCCCCCCCCceEEEEEEEEEccccHHHHHHHHhh
Confidence 567888888888887775566666552221 0 11234554 566666666666665544
No 366
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=22.18 E-value=1.6e+02 Score=24.92 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=29.1
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCC-----------cceEEEEEeCCHHH
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRI-----------SRGFAFVTMDGVED 124 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~-----------~~g~afV~f~~~e~ 124 (238)
+.++|+ +|+.-++++-|.-++.++|--.-|....-.+.++ ...||.|.|+...+
T Consensus 158 nr~aY~-~lS~Rad~~lLe~fc~~~gy~~vvf~qT~de~g~PiYHTNVmMaige~favic~~~i~~ 222 (318)
T COG4874 158 NRTAYA-GLSQRADRELLEVFCEQIGYSRVVFFQTRDESGSPIYHTNVMMAIGEHFAVICDEAIPE 222 (318)
T ss_pred chhhhh-hhhcccCHHHHHHHHHHcCCceeeeeeeccccCCcceehhHHHHhhhheeeeecccccc
Confidence 345554 4677777777777777777322222211112221 24588888765443
No 367
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=22.07 E-value=2.8e+02 Score=19.24 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=41.9
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEe-CCHHHHHHHHHHhCCC
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTM-DGVEDAERCIKYLNQS 135 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f-~~~e~A~~Al~~l~g~ 135 (238)
.|+|.|-|- .-..|..+|..-| .|..+.+-.....+.++ +-+|.- .+.+..++.+++|+..
T Consensus 6 svlVeN~~G--VL~Rit~lFsRRg~NI~SLtvg~Te~~~iSR-mtivv~~~d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 6 KLQVADQVS--TLNRITSAFVRLQYNIDTLHVTHSEQPGISN-MEIQVDIQDDTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEECCCC--HHHHHHHHHhccCcCeeeEEecccCCCCceE-EEEEEeCCCHHHHHHHHHHHhCC
Confidence 466776554 3356778898877 67777776554445444 566665 7888888888888765
No 368
>PF14751 DUF4474: Domain of unknown function (DUF4474)
Probab=22.00 E-value=2.2e+02 Score=23.93 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=31.5
Q ss_pred EEEEEeCCHHHHHHHHHHhC--C-----CeeCCeEEEEEeccCCCCCC
Q 026421 114 FAFVTMDGVEDAERCIKYLN--Q-----SVLEGRYITVERSRRKRPRT 154 (238)
Q Consensus 114 ~afV~f~~~e~A~~Al~~l~--g-----~~i~g~~l~V~~a~~~~~~~ 154 (238)
.+-|.|.+.+-.+++++.|. | ..|.|..|.+.+.+|..+++
T Consensus 147 ~~~I~f~d~~M~~aF~~~l~~~GY~~~e~~i~gntv~~~f~~p~~~qp 194 (241)
T PF14751_consen 147 DITIDFPDEEMWEAFIDGLKKAGYSEKEFSICGNTVSFHFDKPHTPQP 194 (241)
T ss_pred EEEEEeChHHHHHHHHHHHHHcCCCcceEEEeCCEEEEEeCCCCCCCC
Confidence 57799999888888777663 2 25789999999999887553
No 369
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.96 E-value=79 Score=20.79 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=8.8
Q ss_pred CCCCCCcHHHHHHHhhhcC
Q 026421 77 GLSTRVTERDLEKHFSKEG 95 (238)
Q Consensus 77 nLp~~~t~~~L~~~f~~~G 95 (238)
++|+.++.++|++.|..+.
T Consensus 46 ~~p~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 46 QIPDSADSEALLKDLLFKA 64 (75)
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 3444444444444444443
No 370
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=21.70 E-value=40 Score=33.38 Aligned_cols=6 Identities=17% Similarity=-0.009 Sum_probs=2.4
Q ss_pred HHHHHh
Q 026421 127 RCIKYL 132 (238)
Q Consensus 127 ~Al~~l 132 (238)
..|..|
T Consensus 437 ~~~~~l 442 (1194)
T KOG4246|consen 437 DVKSTL 442 (1194)
T ss_pred hhhhcC
Confidence 334433
No 371
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=21.65 E-value=2.4e+02 Score=22.33 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=36.1
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEE-EEEeCCHHHHHHH---HHHhCCCeeCCeEEEEEec
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFA-FVTMDGVEDAERC---IKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~a-fV~f~~~e~A~~A---l~~l~g~~i~g~~l~V~~a 147 (238)
.|.|.==|..|+-++|.++|-..-....+.-. .......|- -|-|.+.++.+.| |+.|+...+.+.+|.++..
T Consensus 56 ~V~V~yDp~~isy~~Ll~~f~~~hDPt~~~~Q---g~D~G~qYRS~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~Tei~ 132 (172)
T PRK14054 56 AVEITYDPAVISYRELLELFFQIHDPTTLNRQ---GNDRGTQYRSAIFYHDEEQKEIAEASIAELQASGLFDKPIVTEVE 132 (172)
T ss_pred EEEEEECCCcCCHHHHHHHHHHhCCCCccCCC---CCCCCcCceeEEEeCCHHHHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 47776667788888888887654222211100 001112343 3445566554444 4444433223455555553
No 372
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.55 E-value=2.1e+02 Score=17.65 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=27.2
Q ss_pred CcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 82 VTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 82 ~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
-.-.+|..+|.+++ .|..+.+..+. .+ .....|.+.+.+.++.+++.|.
T Consensus 12 g~l~~i~~~l~~~~~~i~~~~~~~~~-~~--~~~~~i~~~~~~~~~~~~~~L~ 61 (72)
T cd04874 12 GVLRDLTGVIAEHGGNITYTQQFIER-EG--KARIYMELEGVGDIEELVEELR 61 (72)
T ss_pred ChHHHHHHHHHhCCCCEEEEEEeccC-CC--eEEEEEEEeccccHHHHHHHHh
Confidence 34567888888886 56666554331 11 2334566665545555555554
No 373
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=21.53 E-value=26 Score=29.70 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=48.1
Q ss_pred EEEecCCCCCCcHHH-H--HHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 72 TLYVTGLSTRVTERD-L--EKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~-L--~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
.+++.++-..+..+- | ...|..+-.+...+++.+.. +...+++|+.|....+.+++...-+++.|.-.+|++.-+
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 344555544444443 2 56677776666666665543 455789999998887777777766777777666555443
No 374
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=21.44 E-value=1.6e+02 Score=29.15 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=44.2
Q ss_pred CCCEEEecCCCC--CCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE-EE
Q 026421 69 PGNTLYVTGLST--RVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI-TV 144 (238)
Q Consensus 69 ~~~~l~V~nLp~--~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l-~V 144 (238)
+..-|+|.+..+ .++.....++|..|| +|+-+.|++..+..+. -+. -.++.++||..||.....-..| .|
T Consensus 308 ~KP~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~--E~I----L~~eF~~ai~yLNqflp~e~rl~~i 381 (868)
T KOG1888|consen 308 PKPDIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPR--ESI----LREEFENAIDYLNQFLPPENRLKYI 381 (868)
T ss_pred CCCCeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCch--hHH----HHHHHHHHHHHHhccCCCcceeeee
Confidence 344577776655 667778899999998 5666666665443321 121 2466778888888655444333 34
Q ss_pred Ee
Q 026421 145 ER 146 (238)
Q Consensus 145 ~~ 146 (238)
.|
T Consensus 382 ~w 383 (868)
T KOG1888|consen 382 HW 383 (868)
T ss_pred ec
Confidence 44
No 375
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=21.32 E-value=1.3e+02 Score=20.41 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=18.4
Q ss_pred CEEEecCCCCCC--------cHHHHHHHhhhcCCceEE
Q 026421 71 NTLYVTGLSTRV--------TERDLEKHFSKEGKVASC 100 (238)
Q Consensus 71 ~~l~V~nLp~~~--------t~~~L~~~f~~~G~i~~v 100 (238)
..|+|.+||..+ ....|+.+++.-..|..+
T Consensus 35 ~~v~V~GLPegi~fr~P~~Y~i~~L~~IL~~~~~I~Fv 72 (76)
T PF02946_consen 35 EAVYVQGLPEGIPFRRPSNYGIPRLEKILEASSRIRFV 72 (76)
T ss_dssp TTEEEES--TT--SS-TTTS-HHHHHHHHHTTTT-EEE
T ss_pred CcEEEEeCCCCCcCCCCCcCCHHHHHHHHHccCCcEEE
Confidence 478999998765 456788888877666543
No 376
>PRK07868 acyl-CoA synthetase; Validated
Probab=21.31 E-value=6.2e+02 Score=25.83 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=36.7
Q ss_pred CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC-----CHHHHHHHHHHhCCCeeC
Q 026421 81 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD-----GVEDAERCIKYLNQSVLE 138 (238)
Q Consensus 81 ~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~-----~~e~A~~Al~~l~g~~i~ 138 (238)
.|...+|+.++.+...|..+.++-........-.|||+.. +.++..++|..|...++-
T Consensus 868 ~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~l~~y~vP 930 (994)
T PRK07868 868 PVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALASLPVGLGP 930 (994)
T ss_pred eEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHhCCCCcCC
Confidence 4778999999999988888766543322223457888764 244455555555444443
No 377
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=21.30 E-value=96 Score=24.17 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=25.7
Q ss_pred cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 83 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.-++|++||..|-.+..- +-.-+..|.+.+.|.+.|+..
T Consensus 115 ~l~~I~~fF~~YK~le~~-----------k~~~~~g~~~~~~A~~~I~~~ 153 (155)
T cd00412 115 LLDEIKHFFEHYKDLEGK-----------KEVKVAGWKDKEEALKIIKES 153 (155)
T ss_pred HHHHHHHHHHHhcccCCC-----------CceEECcCcCHHHHHHHHHHH
Confidence 346788899988644320 223455788888888888753
No 378
>PRK11700 hypothetical protein; Provisional
Probab=21.28 E-value=2.3e+02 Score=22.84 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHhhhcCCce
Q 026421 80 TRVTERDLEKHFSKEGKVA 98 (238)
Q Consensus 80 ~~~t~~~L~~~f~~~G~i~ 98 (238)
...+.+.+.+.|.++|++.
T Consensus 49 ~~~tAe~w~~~l~~~G~ll 67 (187)
T PRK11700 49 QNETAERWRQGFLQCGELL 67 (187)
T ss_pred CHHHHHHHHHHHHHhchhh
Confidence 3446677888999998754
No 379
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=21.28 E-value=85 Score=27.30 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=20.0
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhc
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKE 94 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~ 94 (238)
+-...+-.||.++++++|.+++.++
T Consensus 68 Gi~~~~~~l~~~~s~~el~~~I~~l 92 (299)
T PLN02516 68 GIKSFDVDLPENISEAELISKVHEL 92 (299)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4455666899999999999888877
No 380
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=21.20 E-value=2.3e+02 Score=17.94 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=36.0
Q ss_pred cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026421 83 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY 131 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~ 131 (238)
..+++.+.+...-.|..|..+. |...=++.|.+.+.++.+..+..
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~vt----G~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSVT----GEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEES----SSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEEe----CCCCEEEEEEECCHHHHHHHHHH
Confidence 4677888888999999998874 44455788999999999999654
No 381
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=21.11 E-value=1e+02 Score=30.53 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=19.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCCe
Q 026421 112 RGFAFVTMDGVEDAERCIKYLNQSV 136 (238)
Q Consensus 112 ~g~afV~f~~~e~A~~Al~~l~g~~ 136 (238)
...|||+|++...|+.|.+..-...
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr 381 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSR 381 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhh
Confidence 5689999999999999988543333
No 382
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=21.05 E-value=2.5e+02 Score=18.28 Aligned_cols=34 Identities=6% Similarity=0.062 Sum_probs=22.5
Q ss_pred EEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecC
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEP 106 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~ 106 (238)
|.|.+....-.-.+|-++|..+| .|.++......
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 34444444445567889998887 78888776553
No 383
>PLN02936 epsilon-ring hydroxylase
Probab=20.92 E-value=1e+02 Score=28.35 Aligned_cols=41 Identities=17% Similarity=0.038 Sum_probs=29.5
Q ss_pred CcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026421 82 VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY 131 (238)
Q Consensus 82 ~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~ 131 (238)
.....|.+++.+||+|..+.+. +.-+|.+.+++.++.++..
T Consensus 37 ~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~pe~~~~il~~ 77 (489)
T PLN02936 37 ALFLPLFKWMNEYGPVYRLAAG---------PRNFVVVSDPAIAKHVLRN 77 (489)
T ss_pred HHHHHHHHHHHHcCCEEEEccC---------CccEEEEcCHHHHHHHHHh
Confidence 3456778888999998766542 1346777889999888863
No 384
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=20.92 E-value=1.4e+02 Score=26.37 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=26.5
Q ss_pred EEEecCCCCCCcHHHHH---HHhhh-cCCceEEEEeecCCCCCcceEEEEEe
Q 026421 72 TLYVTGLSTRVTERDLE---KHFSK-EGKVASCFLVVEPRTRISRGFAFVTM 119 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~---~~f~~-~G~i~~v~i~~~~~tg~~~g~afV~f 119 (238)
..++.+||..+.+.++. ++|.+ +. .+|.+..+...+.+.|++++.+
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~~~--~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKALG--LQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhccC--CCeEEEEEecCCCCCCEEEEEE
Confidence 55678999888776654 44555 33 3444444444455566655433
No 385
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=20.85 E-value=4.6e+02 Score=22.25 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=21.3
Q ss_pred EecCCCCCCcHHHHHHHhhhcCCceEEEEe
Q 026421 74 YVTGLSTRVTERDLEKHFSKEGKVASCFLV 103 (238)
Q Consensus 74 ~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~ 103 (238)
.|-|++.....+.|..+...+-.+..|+|+
T Consensus 7 cvpNfSEG~~~~~ie~i~a~~~~~~~v~il 36 (302)
T COG3643 7 CVPNFSEGRDLEKIEKIVAAAKSIPTVKIL 36 (302)
T ss_pred eccCccccccHHHHHHHHHHHhcCCceEEE
Confidence 356777778888888877777666666554
No 386
>cd07055 BMC_like_2 Bacterial Micro-Compartment (BMC)-like domain 2. BMC like 2 domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view.
Probab=20.80 E-value=2.5e+02 Score=18.23 Aligned_cols=32 Identities=6% Similarity=0.140 Sum_probs=21.6
Q ss_pred EEEeecCCCCCcceEE-EEEeCCHHHHHHHHHHh
Q 026421 100 CFLVVEPRTRISRGFA-FVTMDGVEDAERCIKYL 132 (238)
Q Consensus 100 v~i~~~~~tg~~~g~a-fV~f~~~e~A~~Al~~l 132 (238)
|.+ .+..++.+..+- ++.|-+.++++.||+.+
T Consensus 25 V~i-~d~f~gCPq~~~~l~i~Gdvs~Ve~Al~~i 57 (61)
T cd07055 25 VFV-SDIFGSCPQHMITLAIFGETSAVELAMREI 57 (61)
T ss_pred eEE-EEecCCCCCceEEEEEEecHHHHHHHHHHH
Confidence 444 455566555554 44888999999998754
No 387
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.79 E-value=1.1e+02 Score=30.17 Aligned_cols=36 Identities=17% Similarity=-0.042 Sum_probs=25.6
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 111 SRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 111 ~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
..+.|||+|++...|+.|.+..+..... .+.|++|-
T Consensus 304 ~~~~aFVtf~sr~~A~~~aq~~~~~~~~--~w~~~~AP 339 (728)
T KOG1134|consen 304 PLPAAFVTFKSRYGAAVAAQTQQSLNPT--KWLTEFAP 339 (728)
T ss_pred CCceEEEEEEeeHHHHHHHHhhhcCCCC--ceEEEecC
Confidence 4679999999999999998854443333 45556653
No 388
>PRK11633 cell division protein DedD; Provisional
Probab=20.69 E-value=3.6e+02 Score=22.44 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=46.0
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHHHhCCC-eeCCeEE
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFV-TMDGVEDAERCIKYLNQS-VLEGRYI 142 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV-~f~~~e~A~~Al~~l~g~-~i~g~~l 142 (238)
..+.|-|+-|......+.|..-|..-|.-.++.-... ..|... =.|| =|.+.+.|++++..|+.. -|.|..+
T Consensus 148 ~~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~-~~G~~t-RV~VGP~~sk~~ae~~~~~Lk~~~Gl~g~Vv 221 (226)
T PRK11633 148 KAYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTP-VQGKIT-RIYVGPDASKDKLKGSLGELKQLSGLSGVVM 221 (226)
T ss_pred CcEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeec-CCCcEE-EEEeCCCCCHHHHHHHHHHHHHhcCCCceEE
Confidence 3467778877776677778887877776555543321 222111 2333 467899999999988873 6777554
No 389
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=20.49 E-value=3e+02 Score=19.74 Aligned_cols=35 Identities=14% Similarity=0.338 Sum_probs=23.1
Q ss_pred HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCH
Q 026421 85 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGV 122 (238)
Q Consensus 85 ~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~ 122 (238)
.+|.+.+...| |.+..|..+..++ .-|++++..+.
T Consensus 25 PEv~~~L~~~G-i~~ysIfl~~~~~--~LF~~~E~~d~ 59 (102)
T TIGR02625 25 PELKEVLKSHG-AHNYSIFLDKQRN--LLFAYVEIEDE 59 (102)
T ss_pred HHHHHHHHHCC-CeEEEEEEECCCC--eEEEEEEECch
Confidence 56777788877 5566666664433 55888887653
No 390
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.44 E-value=2.7e+02 Score=24.90 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=35.8
Q ss_pred CEEEecCCCCCCc--HHHHHHHh----hh-cC--------CceEEEEeecC---CCCCcceEEEEEeCC---HHHHHHHH
Q 026421 71 NTLYVTGLSTRVT--ERDLEKHF----SK-EG--------KVASCFLVVEP---RTRISRGFAFVTMDG---VEDAERCI 129 (238)
Q Consensus 71 ~~l~V~nLp~~~t--~~~L~~~f----~~-~G--------~i~~v~i~~~~---~tg~~~g~afV~f~~---~e~A~~Al 129 (238)
+.|.|-+||.... ...+..|| .. |. .|..++-...+ ....++ ..+|.|.. .+....|.
T Consensus 191 nNiRIiGiPEg~e~~~k~~~~~l~~ii~e~~p~L~~e~~i~IerahR~~~~~~~~~~~PR-~iIvKfl~f~~KE~IL~aA 269 (370)
T PF02994_consen 191 NNIRIIGIPEGEEEEGKGPENFLEEIIPENFPNLPKETDIEIERAHRSPRPKPPKGQRPR-PIIVKFLRFQDKEKILKAA 269 (370)
T ss_dssp TEEEEES----TT--HHHHHHHHHHHHHHH-CHHHHHT---EEEEEEESSSS-TTSSS---EEEEEESSHHHHHHHHHHH
T ss_pred CceeEEecCCCccccccCHHHHHHHHHHHhCcCcccccchhhhhhhcccCCCCCccCCcC-eEEEEecCcccHHHHHHHH
Confidence 5799999999753 22333333 22 32 23343332222 112233 34455554 45555555
Q ss_pred HHhCCCeeCCeEEEEEecc
Q 026421 130 KYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 130 ~~l~g~~i~g~~l~V~~a~ 148 (238)
..+....+.|..|.|...-
T Consensus 270 R~~~~~~~~g~~I~if~Dl 288 (370)
T PF02994_consen 270 REKGQLTYKGKRIRIFPDL 288 (370)
T ss_dssp HHHS-EEETTEEEEEECTS
T ss_pred HhcCceeeCCCceEEeCCC
Confidence 5456678899999887543
No 391
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=20.17 E-value=2.7e+02 Score=24.20 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=44.2
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRI-SRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~-~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
..|-|+-+......+.|..-|...|.-..|. .. .+. ..-+-+--|.+.++|..++..|...-|.+..|.
T Consensus 228 ~~lQvGAF~~~~~Ae~l~akL~~~G~~~~i~--~~--~g~~~yRV~vGPf~sr~~A~~~~~~Lk~~Gi~~~iv~ 297 (298)
T TIGR02223 228 AALQCGAYANKEQAESVRAKLAFLGISSKIT--TT--DGGKWYRVVSGPYKNKDDAEKDLNKLKVAGVAGCIIN 297 (298)
T ss_pred EEEEEeecCCHHHHHHHHHHHHhcCCceEEE--ec--CCceEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEee
Confidence 5666777777777778888888777433332 11 111 111222357789999999999988777776653
No 392
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=20.12 E-value=2.6e+02 Score=23.03 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=30.4
Q ss_pred CcHHHHHHHhhhcCCceEEEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHHhC
Q 026421 82 VTERDLEKHFSKEGKVASCFLVVEPRTRIS-RGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 82 ~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~-~g~afV~f~~~e~A~~Al~~l~ 133 (238)
.+.+++.+++..+|--.-+++....-..|+ -|-..+...+.+++..|++.|.
T Consensus 33 ~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~ 85 (222)
T PF13549_consen 33 TSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLR 85 (222)
T ss_dssp SSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHH
Confidence 356777777777776566666644333332 2556777889998888887663
No 393
>PLN02655 ent-kaurene oxidase
Probab=20.07 E-value=2.1e+02 Score=25.95 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=33.4
Q ss_pred EecCCCCCC---cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 74 YVTGLSTRV---TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 74 ~V~nLp~~~---t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
+|+||..-. ....|.+++.+||.|..+.+. +.-+|...+++.|+.+|.
T Consensus 9 ~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~pe~~k~il~ 59 (466)
T PLN02655 9 VIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTG---------ASSVVVLNSTEVAKEAMV 59 (466)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEEC---------CEeEEEeCCHHHHHHHHH
Confidence 467764321 346788888999998776653 245677788999988876
No 394
>PRK10162 acetyl esterase; Provisional
Probab=20.03 E-value=3.4e+02 Score=23.33 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=34.6
Q ss_pred CCCEEEecCCCCCCcH-HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHHh
Q 026421 69 PGNTLYVTGLSTRVTE-RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD-GVEDAERCIKYL 132 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~-~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~-~~e~A~~Al~~l 132 (238)
+.+.|+++....-..+ ..+.+.+.+.|.-+.+.+... ...+|+.|. ..++|+.|++.+
T Consensus 249 Pp~~i~~g~~D~L~de~~~~~~~L~~aGv~v~~~~~~g------~~H~f~~~~~~~~~a~~~~~~~ 308 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPG------TLHAFLHYSRMMDTADDALRDG 308 (318)
T ss_pred CCeEEEecCCCcCcChHHHHHHHHHHcCCCEEEEEECC------CceehhhccCchHHHHHHHHHH
Confidence 4556666766665543 456677788886555544432 346777774 356677776643
Done!