Query 026421
Match_columns 238
No_of_seqs 427 out of 3128
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:11:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 4.4E-24 1.5E-28 192.1 19.0 90 67-156 99-188 (437)
2 4fxv_A ELAV-like protein 1; RN 99.9 3.8E-24 1.3E-28 154.6 11.8 81 69-149 18-98 (99)
3 1h2v_Z 20 kDa nuclear CAP bind 99.9 8.6E-24 3E-28 164.7 13.5 89 64-152 33-121 (156)
4 2cq0_A Eukaryotic translation 99.9 4.1E-23 1.4E-27 149.8 12.9 91 66-156 11-101 (103)
5 2cpz_A CUG triplet repeat RNA- 99.9 9.1E-23 3.1E-27 150.9 13.3 94 64-157 19-112 (115)
6 2dnz_A Probable RNA-binding pr 99.9 9.4E-23 3.2E-27 145.6 12.8 87 67-153 2-88 (95)
7 3s8s_A Histone-lysine N-methyl 99.9 8E-23 2.7E-27 150.4 12.4 85 67-151 3-87 (110)
8 2dnm_A SRP46 splicing factor; 99.9 5.4E-23 1.8E-27 149.1 10.5 93 64-156 7-99 (103)
9 1whw_A Hypothetical protein ri 99.9 1.5E-22 5E-27 145.7 12.6 89 66-154 4-92 (99)
10 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.1E-22 3.6E-27 147.2 11.8 90 66-155 8-97 (102)
11 2dgs_A DAZ-associated protein 99.9 1.5E-22 5.2E-27 145.7 12.5 89 66-155 6-94 (99)
12 1x5s_A Cold-inducible RNA-bind 99.9 1.3E-22 4.5E-27 146.8 11.9 90 65-154 7-96 (102)
13 2dgo_A Cytotoxic granule-assoc 99.9 7.7E-22 2.6E-26 145.8 16.1 91 64-154 9-99 (115)
14 2d9p_A Polyadenylate-binding p 99.9 2.4E-22 8.1E-27 145.7 13.0 91 64-156 9-99 (103)
15 1u6f_A Tcubp1, RNA-binding pro 99.9 2.9E-22 9.9E-27 153.0 13.9 89 65-153 37-125 (139)
16 2dnh_A Bruno-like 5, RNA bindi 99.9 3.2E-22 1.1E-26 145.4 13.4 90 66-156 11-103 (105)
17 1x5t_A Splicing factor 3B subu 99.9 1.4E-22 4.7E-27 145.0 11.3 87 68-154 3-90 (96)
18 1x5u_A Splicing factor 3B subu 99.9 2.3E-22 8E-27 146.2 12.6 91 64-154 9-99 (105)
19 2cqd_A RNA-binding region cont 99.9 5.6E-22 1.9E-26 146.9 14.7 89 64-153 11-99 (116)
20 1x4h_A RNA-binding protein 28; 99.9 3.4E-22 1.2E-26 146.7 13.4 92 64-155 9-106 (111)
21 3bs9_A Nucleolysin TIA-1 isofo 99.9 2E-22 6.9E-27 141.4 11.3 84 67-150 3-86 (87)
22 2fy1_A RNA-binding motif prote 99.9 3.4E-22 1.2E-26 148.4 12.9 85 67-152 4-88 (116)
23 2lxi_A RNA-binding protein 10; 99.9 3.8E-23 1.3E-27 147.0 7.4 83 70-152 1-85 (91)
24 2do4_A Squamous cell carcinoma 99.9 6.6E-22 2.2E-26 142.6 14.0 88 64-152 11-98 (100)
25 2cph_A RNA binding motif prote 99.9 3.6E-22 1.2E-26 145.6 12.7 91 64-154 9-101 (107)
26 2cpf_A RNA binding motif prote 99.9 2.6E-22 9E-27 144.1 11.8 88 68-155 3-93 (98)
27 3md1_A Nuclear and cytoplasmic 99.9 3.8E-22 1.3E-26 138.8 11.9 82 70-151 1-82 (83)
28 2cqc_A Arginine/serine-rich sp 99.9 3.4E-22 1.2E-26 142.6 11.8 86 64-149 9-94 (95)
29 3ex7_B RNA-binding protein 8A; 99.9 1.1E-22 3.9E-27 152.7 9.7 90 64-153 16-105 (126)
30 2dng_A Eukaryotic translation 99.9 6.4E-22 2.2E-26 143.5 13.1 89 64-154 9-97 (103)
31 2cpe_A RNA-binding protein EWS 99.9 4.2E-22 1.4E-26 146.8 12.0 90 65-154 10-107 (113)
32 3mdf_A Peptidyl-prolyl CIS-tra 99.9 4E-22 1.4E-26 139.3 10.9 82 67-148 4-85 (85)
33 2cq3_A RNA-binding protein 9; 99.9 1.8E-21 6.1E-26 141.1 14.7 90 64-155 9-98 (103)
34 2dgp_A Bruno-like 4, RNA bindi 99.9 5.7E-22 1.9E-26 144.4 11.8 90 65-154 8-100 (106)
35 2kxn_B Transformer-2 protein h 99.9 2.3E-22 7.8E-27 152.1 9.9 90 63-152 39-128 (129)
36 1p27_B RNA-binding protein 8A; 99.9 3.7E-22 1.3E-26 145.4 10.7 86 67-152 20-105 (106)
37 1wi8_A EIF-4B, eukaryotic tran 99.9 7.6E-22 2.6E-26 143.4 12.0 86 66-153 11-97 (104)
38 2div_A TRNA selenocysteine ass 99.9 5.9E-22 2E-26 142.5 11.1 87 65-151 4-95 (99)
39 3p5t_L Cleavage and polyadenyl 99.9 9.2E-23 3.2E-27 144.5 6.7 84 71-154 2-87 (90)
40 2x1f_A MRNA 3'-END-processing 99.9 6.6E-22 2.2E-26 141.6 11.3 84 69-152 1-84 (96)
41 2e5h_A Zinc finger CCHC-type a 99.9 6.2E-22 2.1E-26 141.0 11.0 84 65-148 11-94 (94)
42 2do0_A HnRNP M, heterogeneous 99.9 4.4E-21 1.5E-25 141.5 15.8 89 64-153 9-97 (114)
43 2dhg_A TRNA selenocysteine ass 99.9 9.1E-22 3.1E-26 142.8 11.7 90 64-154 3-94 (104)
44 2cqi_A Nucleolysin TIAR; RNA r 99.9 3.7E-21 1.3E-25 139.4 14.5 89 64-154 9-97 (103)
45 1x4a_A Splicing factor, argini 99.9 4.2E-21 1.4E-25 140.6 14.8 86 65-153 17-102 (109)
46 2dgx_A KIAA0430 protein; RRM d 99.9 1.3E-21 4.4E-26 140.3 11.7 86 65-153 4-93 (96)
47 2dh8_A DAZ-associated protein 99.9 1E-21 3.5E-26 142.8 11.2 89 65-154 11-99 (105)
48 2lkz_A RNA-binding protein 5; 99.9 4E-22 1.4E-26 142.8 8.8 83 67-149 6-94 (95)
49 1oo0_B CG8781-PA, drosophila Y 99.9 8.4E-22 2.9E-26 144.5 10.7 87 66-152 22-108 (110)
50 3ulh_A THO complex subunit 4; 99.9 1.5E-21 5.1E-26 142.4 11.8 84 64-148 23-106 (107)
51 2la6_A RNA-binding protein FUS 99.9 1.3E-21 4.6E-26 140.8 11.3 85 64-148 7-99 (99)
52 4f25_A Polyadenylate-binding p 99.9 1.4E-21 4.9E-26 144.7 11.7 84 69-154 4-87 (115)
53 4a8x_A RNA-binding protein wit 99.9 1.1E-21 3.9E-26 137.7 10.4 84 69-152 3-87 (88)
54 1x4c_A Splicing factor, argini 99.9 5.2E-21 1.8E-25 140.0 14.0 81 65-152 10-95 (108)
55 2dgu_A Heterogeneous nuclear r 99.9 5.3E-21 1.8E-25 138.7 13.8 83 65-155 6-88 (103)
56 2jrs_A RNA-binding protein 39; 99.9 1.3E-21 4.4E-26 143.4 10.6 88 64-151 20-107 (108)
57 2cq4_A RNA binding motif prote 99.9 2.8E-22 9.5E-27 148.1 6.6 84 68-152 23-106 (114)
58 3q2s_C Cleavage and polyadenyl 99.9 1.6E-22 5.4E-27 167.4 5.8 82 69-150 67-150 (229)
59 2cqg_A TDP-43, TAR DNA-binding 99.9 1E-20 3.4E-25 137.1 14.6 89 64-154 9-97 (103)
60 2dgv_A HnRNP M, heterogeneous 99.9 2.7E-21 9.2E-26 137.1 11.2 85 66-152 4-88 (92)
61 3ns6_A Eukaryotic translation 99.9 3.3E-22 1.1E-26 144.5 6.4 83 68-150 4-93 (100)
62 3s7r_A Heterogeneous nuclear r 99.9 3.5E-21 1.2E-25 135.2 11.5 82 65-147 6-87 (87)
63 2cqp_A RNA-binding protein 12; 99.9 1.7E-21 6E-26 139.8 10.1 85 66-150 11-95 (98)
64 2ywk_A Putative RNA-binding pr 99.9 2.3E-21 7.7E-26 138.3 10.6 84 65-149 11-94 (95)
65 2kt5_A RNA and export factor-b 99.9 5.3E-21 1.8E-25 143.3 12.6 91 65-156 30-120 (124)
66 3ucg_A Polyadenylate-binding p 99.9 3.7E-21 1.3E-25 135.5 11.1 81 70-151 6-86 (89)
67 1rk8_A CG8781-PA, CG8781-PA pr 99.9 3.6E-21 1.2E-25 151.3 11.9 88 66-153 68-155 (165)
68 2khc_A Testis-specific RNP-typ 99.9 1.6E-21 5.4E-26 144.8 9.2 85 64-148 34-118 (118)
69 2fc8_A NCL protein; structure 99.9 8.6E-21 2.9E-25 137.1 12.8 85 65-152 10-94 (102)
70 1x4b_A Heterogeneous nuclear r 99.9 4.3E-21 1.5E-25 142.1 11.2 86 68-154 25-110 (116)
71 1sjq_A Polypyrimidine tract-bi 99.9 3.1E-21 1E-25 140.2 9.8 83 66-154 12-96 (105)
72 1wel_A RNA-binding protein 12; 99.9 1E-21 3.4E-26 147.4 7.5 85 66-151 21-105 (124)
73 2dgw_A Probable RNA-binding pr 99.9 1.2E-20 4.2E-25 133.6 12.7 83 66-151 6-88 (91)
74 2dnq_A RNA-binding protein 4B; 99.9 7.4E-21 2.5E-25 134.5 11.5 81 66-154 4-84 (90)
75 2ek1_A RNA-binding protein 12; 99.9 1.6E-21 5.6E-26 139.1 8.2 82 67-148 12-93 (95)
76 2dgt_A RNA-binding protein 30; 99.8 1.3E-20 4.5E-25 133.8 12.8 83 65-155 5-87 (92)
77 2fc9_A NCL protein; structure 99.8 9.5E-21 3.2E-25 136.7 12.2 85 64-152 9-93 (101)
78 3n9u_C Cleavage and polyadenyl 99.8 3.6E-21 1.2E-25 150.1 10.5 82 69-150 54-137 (156)
79 2cpi_A CCR4-NOT transcription 99.8 7.2E-21 2.5E-25 140.0 11.5 85 67-151 12-102 (111)
80 2cpx_A Hypothetical protein FL 99.8 1.5E-21 5.1E-26 144.2 7.6 92 65-156 20-111 (115)
81 1p1t_A Cleavage stimulation fa 99.8 3.9E-21 1.3E-25 139.4 9.5 86 68-153 6-91 (104)
82 1x4d_A Matrin 3; structural ge 99.8 5.8E-21 2E-25 138.4 10.4 82 66-153 11-95 (102)
83 3r27_A HnRNP L, heterogeneous 99.8 7.4E-21 2.5E-25 136.9 10.7 81 65-151 16-98 (100)
84 2cq1_A PTB-like protein L; RRM 99.8 2.3E-20 7.8E-25 135.1 13.1 85 64-154 9-95 (101)
85 2rs2_A Musashi-1, RNA-binding 99.8 5.9E-21 2E-25 140.1 10.2 88 65-153 20-107 (109)
86 2jwn_A Embryonic polyadenylate 99.8 1.3E-20 4.4E-25 141.0 11.6 83 69-152 35-117 (124)
87 2dnp_A RNA-binding protein 14; 99.8 2E-20 7E-25 132.2 11.9 81 65-153 4-84 (90)
88 2kn4_A Immunoglobulin G-bindin 99.8 1.1E-20 3.9E-25 147.1 11.6 89 66-154 66-154 (158)
89 2f3j_A RNA and export factor b 99.8 3.9E-20 1.3E-24 147.1 14.9 87 65-152 83-169 (177)
90 2lea_A Serine/arginine-rich sp 99.8 2.2E-21 7.5E-26 147.8 7.3 89 65-153 42-130 (135)
91 1wez_A HnRNP H', FTP-3, hetero 99.8 9E-21 3.1E-25 137.5 10.1 83 66-151 11-93 (102)
92 1x4e_A RNA binding motif, sing 99.8 1.2E-21 4.1E-26 137.0 5.2 82 67-148 2-83 (85)
93 1wex_A Hypothetical protein (r 99.8 1.3E-20 4.5E-25 137.1 10.8 84 65-154 10-95 (104)
94 2dis_A Unnamed protein product 99.8 7.4E-21 2.5E-25 139.1 9.5 86 68-153 6-95 (109)
95 2m2b_A RNA-binding protein 10; 99.8 2.6E-21 9.1E-26 146.4 7.1 88 65-153 18-111 (131)
96 2ad9_A Polypyrimidine tract-bi 99.8 1.4E-20 4.8E-25 139.9 10.5 84 65-154 26-111 (119)
97 1s79_A Lupus LA protein; RRM, 99.8 5.5E-21 1.9E-25 138.9 8.0 81 67-149 8-88 (103)
98 1wg5_A Heterogeneous nuclear r 99.8 2.2E-20 7.4E-25 135.8 10.9 87 65-153 10-97 (104)
99 1why_A Hypothetical protein ri 99.8 3.2E-20 1.1E-24 133.0 11.7 80 66-151 13-94 (97)
100 2err_A Ataxin-2-binding protei 99.8 1.8E-20 6E-25 137.5 10.5 85 64-150 23-107 (109)
101 1x5o_A RNA binding motif, sing 99.8 6.1E-20 2.1E-24 135.4 13.4 85 65-150 20-112 (114)
102 2cpd_A Apobec-1 stimulating pr 99.8 8.3E-20 2.8E-24 131.3 13.6 81 65-153 10-92 (99)
103 2cpj_A Non-POU domain-containi 99.8 3.6E-20 1.2E-24 133.3 11.7 83 65-153 10-92 (99)
104 2mss_A Protein (musashi1); RNA 99.8 5.1E-21 1.8E-25 130.6 6.8 75 72-147 1-75 (75)
105 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.5E-20 1.2E-24 141.2 12.0 84 64-147 57-140 (140)
106 2cpy_A RNA-binding protein 12; 99.8 8.2E-21 2.8E-25 140.3 8.1 84 66-151 11-95 (114)
107 1x4g_A Nucleolysin TIAR; struc 99.8 4.6E-20 1.6E-24 135.1 12.0 83 66-154 21-103 (109)
108 2lcw_A RNA-binding protein FUS 99.7 3.1E-22 1E-26 148.4 0.0 87 66-152 3-97 (116)
109 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.8E-21 1.6E-25 138.3 6.2 84 66-151 15-99 (100)
110 2ki2_A SS-DNA binding protein 99.8 2.5E-21 8.6E-26 136.8 4.5 83 71-154 2-84 (90)
111 2e5j_A Methenyltetrahydrofolat 99.8 5.2E-20 1.8E-24 132.0 11.3 81 66-151 15-95 (97)
112 2nlw_A Eukaryotic translation 99.8 2.4E-20 8.3E-25 135.8 9.5 84 66-151 11-101 (105)
113 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.9E-21 2.4E-25 130.5 6.0 76 71-147 1-76 (77)
114 2db1_A Heterogeneous nuclear r 99.8 2.8E-20 9.5E-25 138.4 9.8 84 66-151 13-99 (118)
115 2wbr_A GW182, gawky, LD47780P; 99.8 4.3E-20 1.5E-24 129.0 9.9 74 69-148 6-79 (89)
116 2ytc_A PRE-mRNA-splicing facto 99.8 5.2E-20 1.8E-24 128.5 10.4 79 64-148 6-85 (85)
117 1wf1_A RNA-binding protein RAL 99.8 8.6E-20 2.9E-24 133.8 12.0 80 66-153 23-103 (110)
118 2cqh_A IGF-II mRNA-binding pro 99.8 4E-20 1.4E-24 131.4 9.9 82 66-154 4-87 (93)
119 1fj7_A Nucleolin RBD1, protein 99.8 3.1E-21 1.1E-25 139.3 3.7 84 67-152 14-97 (101)
120 2e5g_A U6 snRNA-specific termi 99.8 9.2E-20 3.2E-24 129.9 11.3 82 68-155 6-87 (94)
121 2jvo_A Nucleolar protein 3; nu 99.8 7.2E-20 2.5E-24 134.1 10.6 81 64-152 25-105 (108)
122 2hvz_A Splicing factor, argini 99.8 4.6E-20 1.6E-24 133.1 9.4 77 71-152 1-77 (101)
123 2jvr_A Nucleolar protein 3; RN 99.8 3.8E-20 1.3E-24 136.2 9.0 80 67-150 25-105 (111)
124 2a3j_A U1 small nuclear ribonu 99.8 6.3E-20 2.1E-24 138.2 10.2 84 65-151 24-111 (127)
125 2kvi_A Nuclear polyadenylated 99.8 3.6E-20 1.2E-24 132.6 8.5 80 66-153 6-86 (96)
126 2la4_A Nuclear and cytoplasmic 99.8 5.4E-20 1.9E-24 132.7 9.5 78 67-150 24-101 (101)
127 1x4f_A Matrin 3; structural ge 99.8 3.4E-20 1.2E-24 136.4 8.3 82 67-154 22-106 (112)
128 2hgl_A HNRPF protein, heteroge 99.8 5E-20 1.7E-24 140.4 9.2 84 65-150 39-125 (136)
129 1nu4_A U1A RNA binding domain; 99.8 3.5E-20 1.2E-24 132.6 7.8 84 66-152 4-91 (97)
130 1x5p_A Negative elongation fac 99.8 4.1E-19 1.4E-23 127.3 13.2 83 65-155 10-92 (97)
131 3beg_B Splicing factor, argini 99.8 5.1E-20 1.7E-24 136.3 8.6 75 68-149 14-93 (115)
132 2xnq_A Nuclear polyadenylated 99.8 2.6E-19 9.1E-24 128.5 11.5 79 64-150 16-95 (97)
133 1iqt_A AUF1, heterogeneous nuc 99.8 2.2E-20 7.6E-25 127.3 5.3 75 72-147 1-75 (75)
134 1fjc_A Nucleolin RBD2, protein 99.8 9.1E-20 3.1E-24 130.2 8.4 81 66-151 12-92 (96)
135 4f02_A Polyadenylate-binding p 99.8 2.9E-19 1E-23 145.8 12.3 86 66-151 11-96 (213)
136 3lqv_A PRE-mRNA branch site pr 99.8 1.6E-19 5.6E-24 133.2 9.7 83 66-151 4-86 (115)
137 2krb_A Eukaryotic translation 99.8 4.7E-20 1.6E-24 127.8 6.3 73 70-144 1-80 (81)
138 2hgn_A Heterogeneous nuclear r 99.8 1.8E-20 6.2E-25 143.3 4.4 84 65-151 41-124 (139)
139 2e44_A Insulin-like growth fac 99.8 2.2E-19 7.7E-24 128.2 9.9 81 67-151 12-93 (96)
140 3egn_A RNA-binding protein 40; 99.8 4.9E-20 1.7E-24 141.3 6.7 89 65-153 40-133 (143)
141 2lmi_A GRSF-1, G-rich sequence 99.8 3.5E-20 1.2E-24 135.4 5.5 85 65-151 6-93 (107)
142 2dnn_A RNA-binding protein 12; 99.8 2.9E-19 9.8E-24 131.1 10.1 79 69-150 15-93 (109)
143 2xs2_A Deleted in azoospermia- 99.8 8.6E-20 2.9E-24 131.9 6.5 84 66-152 5-88 (102)
144 1whx_A Hypothetical protein ri 99.8 2.5E-19 8.7E-24 131.7 8.8 78 69-152 9-86 (111)
145 2qfj_A FBP-interacting repress 99.8 7.6E-19 2.6E-23 142.6 12.2 89 68-156 123-211 (216)
146 2cq2_A Hypothetical protein LO 99.8 3.8E-19 1.3E-23 131.0 9.3 85 65-155 20-111 (114)
147 1b7f_A Protein (SXL-lethal pro 99.8 7.1E-19 2.4E-23 137.2 11.3 84 69-152 2-85 (168)
148 1fxl_A Paraneoplastic encephal 99.8 1.1E-18 3.7E-23 135.8 12.3 83 70-152 2-84 (167)
149 3md3_A Nuclear and cytoplasmic 99.8 1.1E-18 3.9E-23 135.5 12.2 84 66-149 83-166 (166)
150 2i2y_A Fusion protein consists 99.8 5.7E-19 1.9E-23 136.4 9.6 83 64-151 67-149 (150)
151 2dha_A FLJ20171 protein; RRM d 99.8 1.9E-19 6.4E-24 134.8 6.5 81 68-150 21-105 (123)
152 1wg1_A KIAA1579 protein, homol 99.8 8.6E-19 3E-23 123.4 9.3 76 69-151 4-79 (88)
153 2hgm_A HNRPF protein, heteroge 99.8 1.9E-19 6.5E-24 135.2 6.1 83 65-150 37-121 (126)
154 1l3k_A Heterogeneous nuclear r 99.8 1.7E-18 6E-23 138.4 11.5 87 67-154 101-187 (196)
155 2yh0_A Splicing factor U2AF 65 99.8 2.3E-18 7.8E-23 137.9 12.0 86 67-152 111-196 (198)
156 3zzy_A Polypyrimidine tract-bi 99.8 2.4E-18 8.2E-23 129.5 11.3 79 69-152 27-108 (130)
157 1l3k_A Heterogeneous nuclear r 99.8 2.3E-18 8E-23 137.6 11.2 87 65-152 8-94 (196)
158 2bz2_A Negative elongation fac 99.8 2E-18 6.7E-23 129.0 9.8 82 65-154 34-115 (121)
159 1sjr_A Polypyrimidine tract-bi 99.8 2.5E-18 8.6E-23 134.1 10.4 78 70-151 46-125 (164)
160 2e5i_A Heterogeneous nuclear r 99.8 9.1E-18 3.1E-22 125.6 12.9 79 68-152 21-104 (124)
161 1wf0_A TDP-43, TAR DNA-binding 99.8 1E-18 3.6E-23 122.8 7.1 80 68-154 3-82 (88)
162 2diu_A KIAA0430 protein; struc 99.8 4.9E-18 1.7E-22 119.7 10.4 77 67-153 5-87 (96)
163 2dnl_A Cytoplasmic polyadenyla 99.8 1.9E-18 6.6E-23 127.5 8.7 80 67-149 5-87 (114)
164 2g4b_A Splicing factor U2AF 65 99.8 3.9E-18 1.3E-22 133.6 10.9 81 68-148 92-172 (172)
165 3d2w_A TAR DNA-binding protein 99.8 4.1E-18 1.4E-22 120.4 9.4 79 65-152 6-86 (89)
166 2j8a_A Histone-lysine N-methyl 99.8 3.1E-18 1.1E-22 127.5 9.0 79 70-148 2-94 (136)
167 2cjk_A Nuclear polyadenylated 99.8 1.6E-18 5.5E-23 135.1 7.9 81 69-150 86-166 (167)
168 4f02_A Polyadenylate-binding p 99.7 5.6E-18 1.9E-22 138.2 10.7 81 69-151 102-182 (213)
169 3tyt_A Heterogeneous nuclear r 99.7 6.1E-18 2.1E-22 137.5 10.3 79 68-151 2-81 (205)
170 2qfj_A FBP-interacting repress 99.7 6.4E-18 2.2E-22 137.1 9.9 84 68-151 26-109 (216)
171 3md3_A Nuclear and cytoplasmic 99.7 1.5E-17 5.2E-22 129.1 11.5 81 71-152 1-81 (166)
172 2hzc_A Splicing factor U2AF 65 99.7 5.9E-18 2E-22 118.4 8.1 72 68-146 4-86 (87)
173 1b7f_A Protein (SXL-lethal pro 99.7 1.6E-17 5.4E-22 129.5 11.3 80 68-147 87-168 (168)
174 2pe8_A Splicing factor 45; RRM 99.7 2.5E-17 8.4E-22 119.9 11.5 83 67-149 5-93 (105)
175 1fxl_A Paraneoplastic encephal 99.7 2.9E-17 9.8E-22 127.6 10.7 80 68-147 86-167 (167)
176 3nmr_A Cugbp ELAV-like family 99.7 2.8E-17 9.7E-22 128.7 10.2 84 69-152 2-90 (175)
177 3nmr_A Cugbp ELAV-like family 99.7 4.1E-17 1.4E-21 127.8 10.5 80 68-148 93-175 (175)
178 2dit_A HIV TAT specific factor 99.7 2.2E-16 7.4E-21 116.1 13.7 83 66-152 11-104 (112)
179 3pgw_A U1-A; protein-RNA compl 99.7 5.1E-17 1.7E-21 137.5 11.5 84 65-151 4-91 (282)
180 1fje_B Nucleolin RBD12, protei 99.7 4.1E-17 1.4E-21 128.3 9.3 79 67-150 96-174 (175)
181 3u1l_A PRE-mRNA-splicing facto 99.7 3.7E-17 1.2E-21 135.4 8.7 79 67-151 131-230 (240)
182 2cjk_A Nuclear polyadenylated 99.7 3.1E-17 1E-21 127.8 7.7 80 69-150 2-81 (167)
183 2voo_A Lupus LA protein; RNA-b 99.7 1.2E-16 4E-21 128.7 11.3 79 70-150 109-187 (193)
184 2adc_A Polypyrimidine tract-bi 99.7 7.8E-17 2.7E-21 132.8 10.2 82 66-152 30-112 (229)
185 2ghp_A U4/U6 snRNA-associated 99.7 7.3E-17 2.5E-21 137.1 9.9 84 66-150 206-291 (292)
186 3pgw_A U1-A; protein-RNA compl 99.7 2E-16 6.7E-21 133.8 11.2 78 66-148 203-281 (282)
187 3smz_A Protein raver-1, ribonu 99.7 2.6E-16 8.8E-21 133.2 11.9 86 66-152 180-266 (284)
188 3smz_A Protein raver-1, ribonu 99.7 4E-16 1.4E-20 132.0 12.4 84 69-152 94-177 (284)
189 1fje_B Nucleolin RBD12, protei 99.7 3.7E-17 1.3E-21 128.5 4.6 85 66-152 9-93 (175)
190 1qm9_A Polypyrimidine tract-bi 99.7 1.9E-16 6.5E-21 127.1 7.8 78 70-152 3-81 (198)
191 3tyt_A Heterogeneous nuclear r 99.6 3.1E-16 1.1E-20 127.4 8.7 79 67-147 120-204 (205)
192 3v4m_A Splicing factor U2AF 65 99.6 5.5E-16 1.9E-20 112.8 8.9 82 68-149 3-96 (105)
193 1qm9_A Polypyrimidine tract-bi 99.6 3.1E-16 1.1E-20 125.8 8.3 79 67-150 117-197 (198)
194 2adc_A Polypyrimidine tract-bi 99.6 5.4E-16 1.8E-20 127.7 9.5 79 67-150 148-228 (229)
195 3sde_A Paraspeckle component 1 99.6 7.7E-16 2.6E-20 129.2 9.9 78 66-149 18-95 (261)
196 3ue2_A Poly(U)-binding-splicin 99.6 1.6E-15 5.3E-20 112.6 9.9 81 69-149 19-108 (118)
197 3sde_A Paraspeckle component 1 99.6 1.8E-15 6.2E-20 127.0 10.7 84 69-153 95-182 (261)
198 2ghp_A U4/U6 snRNA-associated 99.6 1.5E-15 5.1E-20 129.0 9.9 84 69-153 116-200 (292)
199 2g4b_A Splicing factor U2AF 65 99.6 1.7E-15 5.9E-20 118.4 9.4 77 69-152 3-90 (172)
200 2d9o_A DNAJ (HSP40) homolog, s 99.6 7.1E-15 2.4E-19 105.8 11.7 79 70-155 10-95 (100)
201 1jmt_A Splicing factor U2AF 35 99.6 4.2E-16 1.4E-20 113.2 5.0 72 75-147 20-103 (104)
202 2yh0_A Splicing factor U2AF 65 99.6 2.5E-15 8.6E-20 120.1 9.6 77 69-152 3-90 (198)
203 3tht_A Alkylated DNA repair pr 99.6 7.9E-15 2.7E-19 127.4 8.9 79 64-148 12-97 (345)
204 3s6e_A RNA-binding protein 39; 99.5 7.1E-14 2.4E-18 102.9 10.0 79 67-149 4-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 4.8E-13 1.6E-17 93.4 9.1 78 67-153 4-89 (91)
206 1owx_A Lupus LA protein, SS-B, 99.4 5.8E-13 2E-17 98.6 8.8 79 65-149 13-95 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.3 4.9E-12 1.7E-16 88.7 6.0 75 65-148 10-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 2.5E-10 8.4E-15 93.2 10.7 79 70-148 124-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 6.9E-09 2.4E-13 74.2 9.8 73 68-146 19-96 (117)
210 1wey_A Calcipressin 1; structu 98.4 1.2E-06 4E-11 62.3 7.1 76 69-150 4-84 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.4 5.7E-06 2E-10 58.6 10.5 75 68-151 6-85 (104)
212 1uw4_A UPF3X; nonsense mediate 98.3 4.4E-06 1.5E-10 58.3 9.2 78 71-148 2-86 (91)
213 1wwh_A Nucleoporin 35, nucleop 98.2 6.6E-06 2.3E-10 60.0 7.9 73 67-147 21-94 (119)
214 1whv_A Poly(A)-specific ribonu 98.1 1.4E-05 4.7E-10 56.0 8.1 55 70-133 16-70 (100)
215 2l08_A Regulator of nonsense t 97.9 2.3E-05 7.7E-10 55.1 5.9 79 70-148 9-94 (97)
216 3ctr_A Poly(A)-specific ribonu 97.9 1.7E-05 5.8E-10 55.7 5.2 53 72-133 8-60 (101)
217 3p3d_A Nucleoporin 53; structu 97.6 7.4E-05 2.5E-09 55.2 5.3 78 69-148 6-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.2 0.00024 8.2E-09 63.7 4.0 55 70-130 53-107 (464)
219 2kn4_A Immunoglobulin G-bindin 97.0 0.00068 2.3E-08 51.5 4.7 35 99-135 2-36 (158)
220 2i2y_A Fusion protein consists 96.8 0.0005 1.7E-08 51.9 2.4 41 109-150 10-51 (150)
221 3d45_A Poly(A)-specific ribonu 95.0 0.065 2.2E-06 48.6 8.0 55 71-134 441-495 (507)
222 4eyt_A Telomerase associated p 95.0 0.19 6.4E-06 34.4 8.1 59 66-132 8-66 (129)
223 2g0c_A ATP-dependent RNA helic 93.8 0.14 4.7E-06 33.7 5.5 68 72-148 2-75 (76)
224 4e8u_A Putative uncharacterize 84.1 2.5 8.6E-05 32.4 6.1 57 71-130 13-81 (172)
225 3fry_A Probable copper-exporti 83.1 4.2 0.00014 25.6 6.3 55 71-132 7-61 (73)
226 2cu1_A Mitogen-activated prote 80.1 4.6 0.00016 28.0 5.6 67 75-150 21-88 (103)
227 3dxs_X Copper-transporting ATP 75.4 12 0.00039 23.2 6.5 56 71-132 4-63 (74)
228 1yg0_A COP associated protein; 66.7 17 0.00057 21.3 6.1 55 72-132 4-61 (66)
229 3lpe_A Putative transcription 66.6 11 0.00038 25.5 5.0 25 111-135 49-73 (92)
230 2lfv_A Protein DAMX; cell divi 69.4 1.3 4.3E-05 31.3 0.0 67 70-140 25-92 (106)
231 4f25_A Polyadenylate-binding p 65.3 1.4 4.9E-05 30.9 0.2 19 68-86 95-113 (115)
232 4a4j_A Pacszia, cation-transpo 65.3 11 0.00037 22.9 4.5 55 71-131 4-61 (69)
233 1vd2_A Protein kinase C, IOTA 65.2 18 0.0006 24.5 5.7 55 73-132 17-74 (89)
234 1h2v_Z 20 kDa nuclear CAP bind 64.6 1.2 4.3E-05 33.0 -0.2 7 123-129 54-60 (156)
235 2xmw_A PACS-N, cation-transpor 63.4 21 0.00071 21.2 6.3 55 72-132 6-63 (71)
236 2kt2_A Mercuric reductase; nme 61.7 23 0.00077 21.0 6.2 53 72-130 3-58 (69)
237 1q8l_A Copper-transporting ATP 61.1 28 0.00097 22.0 7.1 57 70-132 10-70 (84)
238 2l3m_A Copper-ION-binding prot 60.6 24 0.00083 21.0 6.0 56 71-132 7-66 (71)
239 4bby_A Alkyldihydroxyacetoneph 58.5 6.5 0.00022 36.6 3.4 55 77-132 350-408 (658)
240 2v94_A RPS24, 30S ribosomal pr 58.2 27 0.00092 24.4 5.8 47 81-128 38-89 (107)
241 2lsl_A Telomerase associated p 62.4 2.2 7.4E-05 29.4 0.0 66 67-132 15-97 (137)
242 3cjk_B Copper-transporting ATP 57.7 29 0.00099 21.0 6.4 55 72-132 5-63 (75)
243 2npt_B Mitogen-activated prote 57.6 26 0.0009 23.9 5.4 53 75-135 33-86 (100)
244 1cpz_A Protein (COPZ); copper 57.4 26 0.0009 20.5 7.3 54 71-130 2-59 (68)
245 1ywx_A 30S ribosomal protein S 57.2 45 0.0015 23.1 7.3 47 80-127 28-79 (102)
246 1aw0_A Menkes copper-transport 57.1 22 0.00076 21.2 5.0 55 72-132 6-64 (72)
247 1osd_A MERP, hypothetical prot 57.0 28 0.00097 20.7 7.1 56 71-132 5-64 (72)
248 3ced_A Methionine import ATP-b 56.5 19 0.00066 24.5 4.8 63 72-134 22-87 (98)
249 2ofg_X Zinc-transporting ATPas 56.2 39 0.0013 23.0 6.6 55 71-131 10-68 (111)
250 1kvi_A Copper-transporting ATP 56.0 32 0.0011 21.1 7.5 56 71-132 10-69 (79)
251 2g9o_A Copper-transporting ATP 55.1 19 0.00067 23.4 4.6 56 71-132 5-64 (90)
252 1xn9_A 30S ribosomal protein S 54.8 49 0.0017 22.8 7.4 49 80-129 28-81 (101)
253 2exu_A Transcription initiatio 54.6 24 0.0008 27.7 5.5 26 111-136 148-173 (200)
254 3lo3_A Uncharacterized conserv 53.8 23 0.00078 23.9 4.8 20 111-130 52-71 (94)
255 3bgu_A Ferredoxin-like protein 53.6 36 0.0012 23.8 6.0 55 72-127 24-88 (116)
256 3u5c_Y RP50, 40S ribosomal pro 53.1 63 0.0022 23.5 7.5 47 81-128 34-85 (135)
257 2qyc_A Ferredoxin-like protein 53.0 50 0.0017 22.3 6.7 55 72-127 7-71 (103)
258 1tr0_A Stable protein 1; plant 52.3 53 0.0018 22.4 7.0 56 72-127 11-79 (108)
259 1yjr_A Copper-transporting ATP 52.3 35 0.0012 20.4 7.0 56 70-131 5-64 (75)
260 3h7h_B Transcription elongatio 51.5 32 0.0011 23.9 5.3 34 97-135 41-74 (106)
261 3bde_A MLL5499 protein; stress 50.8 51 0.0017 23.2 6.5 56 72-127 23-86 (120)
262 2xzm_P RPS24E; ribosome, trans 50.7 40 0.0014 25.0 5.9 48 80-128 31-83 (149)
263 2cfx_A HTH-type transcriptiona 50.6 66 0.0022 23.0 8.1 53 77-134 72-124 (144)
264 1mwy_A ZNTA; open-faced beta-s 50.5 39 0.0013 20.3 7.7 56 71-132 5-62 (73)
265 1fvq_A Copper-transporting ATP 50.2 35 0.0012 20.2 5.0 55 72-132 5-62 (72)
266 1y3j_A Copper-transporting ATP 49.7 25 0.00086 21.5 4.3 55 72-132 6-64 (77)
267 1p6t_A Potential copper-transp 49.7 50 0.0017 23.3 6.5 55 72-132 77-135 (151)
268 2w7a_A LINE-1 ORF1P; RNA-bindi 49.6 52 0.0018 22.6 6.1 75 71-145 4-98 (100)
269 2kpo_A Rossmann 2X2 fold prote 49.6 20 0.00067 23.7 3.6 50 81-143 32-82 (110)
270 1q4r_A Protein AT3G17210; cent 49.0 62 0.0021 22.2 8.1 56 72-127 13-79 (112)
271 2c60_A Human mitogen-activated 49.0 28 0.00097 24.1 4.5 53 75-135 44-97 (111)
272 2kyz_A Heavy metal binding pro 48.9 23 0.00078 21.1 3.9 52 72-130 4-55 (67)
273 2j5a_A 30S ribosomal protein S 48.8 64 0.0022 22.4 7.0 71 72-144 12-100 (110)
274 3bb5_A Stress responsive alpha 48.8 67 0.0023 22.5 8.2 58 71-128 22-90 (121)
275 2ew9_A Copper-transporting ATP 48.5 42 0.0014 23.5 5.9 56 71-132 82-141 (149)
276 4hhu_A OR280; engineered prote 48.3 54 0.0019 23.3 6.0 71 72-147 44-129 (170)
277 2k2p_A Uncharacterized protein 48.3 22 0.00077 23.0 4.0 57 70-132 23-80 (85)
278 1x60_A Sporulation-specific N- 48.2 27 0.00092 22.3 4.3 65 68-137 7-71 (79)
279 1opz_A Potential copper-transp 48.1 42 0.0014 20.0 7.9 56 71-132 8-67 (76)
280 3ts2_A Protein LIN-28 homolog 48.0 2.3 8E-05 31.8 -1.2 28 85-120 2-29 (148)
281 2qif_A Copper chaperone COPZ; 48.0 38 0.0013 19.5 6.3 55 72-132 5-63 (69)
282 1x8d_A Hypothetical protein YI 46.6 54 0.0018 22.6 5.9 34 85-121 27-60 (104)
283 2jrh_A Mitogen-activated prote 45.9 51 0.0018 22.2 5.3 65 75-148 17-82 (94)
284 1mli_A Muconolactone isomerase 45.6 70 0.0024 21.8 7.6 65 76-146 9-83 (96)
285 2ko1_A CTR148A, GTP pyrophosph 45.6 56 0.0019 20.7 7.8 60 73-134 8-68 (88)
286 2cs4_A Protein C12ORF2; GTP bi 44.5 14 0.00049 25.3 2.5 22 75-96 21-43 (95)
287 3uzu_A Ribosomal RNA small sub 44.3 7.1 0.00024 32.2 1.1 34 71-104 115-148 (279)
288 3fut_A Dimethyladenosine trans 44.1 13 0.00046 30.3 2.8 33 70-103 110-142 (271)
289 3swz_A Steroid 17-alpha-hydrox 43.6 34 0.0012 29.6 5.6 51 71-130 15-69 (494)
290 2ldi_A Zinc-transporting ATPas 42.9 48 0.0017 19.2 5.7 53 72-130 6-62 (71)
291 1cqm_A Ribosomal protein S6; a 42.7 45 0.0015 22.7 5.0 56 73-130 7-76 (101)
292 2okq_A Hypothetical protein YB 42.2 86 0.0029 22.9 6.4 45 87-131 50-109 (141)
293 3pm9_A Putative oxidoreductase 41.5 32 0.0011 30.5 5.0 54 78-132 194-251 (476)
294 2fiu_A Conserved hypothetical 41.3 80 0.0027 21.3 6.6 18 113-130 55-72 (99)
295 3j21_T 50S ribosomal protein L 40.7 64 0.0022 21.5 5.2 55 73-130 25-81 (86)
296 2e7g_A Putative ribosome-bindi 39.0 51 0.0018 23.6 5.0 33 94-130 43-76 (129)
297 3bn7_A Ferredoxin-like protein 38.7 99 0.0034 21.6 6.9 56 72-127 23-91 (120)
298 2ns6_A Mobilization protein A; 38.5 86 0.0029 24.0 6.4 48 72-122 72-127 (185)
299 2qrr_A Methionine import ATP-b 38.4 60 0.0021 21.9 5.1 62 72-133 25-88 (101)
300 2crl_A Copper chaperone for su 38.0 86 0.0029 20.7 7.3 53 72-131 22-75 (98)
301 2g1d_A 30S ribosomal protein S 37.9 25 0.00084 24.2 2.9 46 81-127 30-80 (98)
302 1jww_A Potential copper-transp 37.1 58 0.002 19.7 4.6 55 72-132 6-64 (80)
303 3iwl_A Copper transport protei 37.1 67 0.0023 19.2 5.4 53 71-131 4-57 (68)
304 2rop_A Copper-transporting ATP 36.7 1.2E+02 0.0041 22.7 7.2 56 71-132 124-183 (202)
305 2kkh_A Putative heavy metal tr 36.7 84 0.0029 20.2 8.0 56 71-132 18-77 (95)
306 2f06_A Conserved hypothetical 36.5 1.1E+02 0.0038 21.6 7.3 49 84-137 86-135 (144)
307 3dhx_A Methionine import ATP-b 35.8 25 0.00085 24.2 2.7 56 80-135 31-88 (106)
308 1wvf_A 4-cresol dehydrogenase 35.2 25 0.00084 31.6 3.2 43 86-129 217-261 (520)
309 2lea_A Serine/arginine-rich sp 34.9 8.1 0.00028 27.8 0.0 28 113-140 5-32 (135)
310 3hhl_A RPA0582; alpha-beta-bar 34.8 1.3E+02 0.0045 21.9 6.9 19 112-130 88-106 (143)
311 2uuu_A Alkyldihydroxyacetoneph 34.7 23 0.00079 32.4 3.0 54 79-133 282-339 (584)
312 3ftd_A Dimethyladenosine trans 34.7 31 0.0011 27.6 3.5 33 71-103 96-128 (249)
313 1qyr_A KSGA, high level kasuga 34.6 34 0.0012 27.5 3.7 31 71-101 91-121 (252)
314 3tqs_A Ribosomal RNA small sub 33.7 9.5 0.00033 30.9 0.2 32 72-103 98-129 (255)
315 2hh3_A KH-type splicing regula 33.6 39 0.0013 23.4 3.4 46 85-134 31-76 (106)
316 3fjv_A Uncharacterized novel p 32.9 74 0.0025 24.7 5.2 56 83-145 66-128 (194)
317 3pm0_A Cypib1, cytochrome P450 32.6 66 0.0023 27.7 5.6 50 72-130 17-68 (507)
318 3e6i_A CYPIIE1, P450-J, cytoch 32.5 55 0.0019 27.9 5.0 50 72-130 18-70 (476)
319 3bsu_A Ribonuclease H1, RNAse 31.8 84 0.0029 18.7 4.8 33 81-130 17-49 (53)
320 1i4w_A Mitochondrial replicati 31.5 37 0.0013 28.9 3.6 22 72-93 144-165 (353)
321 2l69_A Rossmann 2X3 fold prote 31.4 86 0.0029 21.3 4.7 34 113-148 52-85 (134)
322 2qlw_A RHAU; mutarotase, isome 31.3 21 0.00072 26.4 1.7 48 71-121 43-100 (144)
323 2rf4_B DNA-directed RNA polyme 30.8 40 0.0014 22.5 2.8 30 65-94 14-43 (87)
324 3d53_A Inorganic pyrophosphata 30.4 76 0.0026 24.1 4.8 39 83-132 131-169 (173)
325 2e5p_A Protein PHF1, PHD finge 30.0 16 0.00054 23.2 0.7 10 112-121 37-46 (68)
326 2xmm_A SSR2857 protein, ATX1; 29.9 79 0.0027 17.9 5.2 55 72-132 4-59 (64)
327 3p8b_B Transcription antitermi 29.8 79 0.0027 23.1 4.8 34 97-135 33-66 (152)
328 2d8m_A DNA-repair protein XRCC 29.6 40 0.0014 23.9 3.1 29 68-97 23-51 (129)
329 3llh_A RISC-loading complex su 29.5 1.2E+02 0.0042 19.9 5.8 26 77-102 10-35 (90)
330 2yko_A LINE-1 ORF1P; RNA-bindi 29.4 1.7E+02 0.0059 23.3 6.9 77 70-147 52-149 (233)
331 3tbg_A Cytochrome P450 2D6; mo 29.3 34 0.0012 29.3 3.1 48 74-130 20-70 (479)
332 2qsw_A Methionine import ATP-b 29.2 93 0.0032 20.8 4.8 62 72-133 25-88 (100)
333 2i9x_A Putative septation prot 28.8 75 0.0026 21.2 4.0 26 96-121 5-30 (87)
334 3fmb_A Dimeric protein of unkn 28.7 1.5E+02 0.0051 20.6 7.3 56 72-127 23-90 (118)
335 3u5e_X 60S ribosomal protein L 28.5 84 0.0029 23.1 4.6 55 73-130 81-137 (142)
336 2inr_A DNA topoisomerase 4 sub 28.0 99 0.0034 27.8 5.8 63 70-134 275-341 (514)
337 3bbn_F Ribosomal protein S6; s 27.9 29 0.001 26.3 2.1 56 72-129 67-145 (168)
338 2gu3_A YPMB protein; APC1927, 27.7 84 0.0029 22.7 4.5 47 75-121 68-127 (136)
339 3rfw_A Cell-binding factor 2; 27.6 85 0.0029 24.7 5.0 46 80-133 89-134 (252)
340 1uta_A FTSN, MSGA, cell divisi 26.9 12 0.00041 24.3 -0.2 64 70-139 9-73 (81)
341 4a17_R RPL23A, 60S ribosomal p 26.7 87 0.003 23.2 4.4 55 73-130 89-145 (150)
342 2exr_A Cytokinin dehydrogenase 26.1 1.4E+02 0.0047 26.7 6.6 49 84-133 211-263 (524)
343 1qez_A Ppase, S-ppase, protein 25.9 1E+02 0.0035 23.4 4.8 39 83-132 127-165 (173)
344 2zkr_s 60S ribosomal protein L 25.6 94 0.0032 23.2 4.4 55 73-130 95-151 (156)
345 2prd_A Pyrophosphate phosphohy 25.2 68 0.0023 24.4 3.7 41 83-132 128-168 (174)
346 3mfb_A Uncharacterized protein 24.7 1.1E+02 0.0038 22.8 4.7 37 82-118 3-42 (157)
347 4a8j_B Elongator complex prote 24.7 2.1E+02 0.0072 23.3 6.6 48 70-117 166-221 (270)
348 2cg4_A Regulatory protein ASNC 24.6 1.9E+02 0.0065 20.5 7.3 53 77-133 75-128 (152)
349 2e1c_A Putative HTH-type trans 24.4 2.1E+02 0.0073 21.0 7.3 52 77-133 94-145 (171)
350 1e8g_A Vanillyl-alcohol oxidas 24.3 27 0.00094 31.6 1.6 43 87-130 250-294 (560)
351 2nn4_A Hypothetical protein YQ 24.2 29 0.001 22.4 1.2 18 83-100 4-21 (72)
352 3nxu_A Cytochrome P450 3A4; al 24.1 64 0.0022 27.7 3.9 49 73-130 23-73 (485)
353 2ia9_A Putative septation prot 23.8 1E+02 0.0035 21.2 4.0 26 96-121 5-30 (100)
354 3n9y_A Cholesterol SIDE-chain 23.7 1.3E+02 0.0043 25.7 5.8 38 84-130 35-72 (487)
355 2m0o_A PHD finger protein 1; t 23.5 24 0.00083 23.0 0.7 10 112-121 54-63 (79)
356 1vq8_S 50S ribosomal protein L 23.4 83 0.0028 20.9 3.5 52 73-127 24-77 (85)
357 1pqs_A Cell division control p 23.3 63 0.0022 21.0 2.8 49 77-132 7-64 (77)
358 2i9z_A Putative septation prot 23.1 1.1E+02 0.0037 21.3 4.1 26 96-121 5-30 (105)
359 4ev1_A Anabena TIC22; TIC22 fo 22.9 2.3E+02 0.0078 22.8 6.6 20 115-134 44-63 (252)
360 3rgo_A Protein-tyrosine phosph 22.3 1.7E+02 0.0059 20.6 5.5 22 71-95 7-28 (157)
361 1zpv_A ACT domain protein; str 22.3 1.6E+02 0.0054 18.7 5.4 34 72-105 7-41 (91)
362 3off_A LDLR chaperone BOCA; ME 22.0 1.9E+02 0.0064 19.4 6.9 54 73-134 14-74 (90)
363 1cc8_A Protein (metallochapero 21.9 1.4E+02 0.0047 17.9 5.8 53 72-131 8-62 (73)
364 3fle_A SE_1780 protein; struct 21.8 2.9E+02 0.01 21.6 7.7 27 69-95 6-33 (249)
365 3ilw_A DNA gyrase subunit A; D 21.4 1E+02 0.0035 27.3 4.6 61 70-131 236-300 (470)
366 1q1o_A Cell division control p 21.1 1.2E+02 0.004 20.8 3.9 49 77-132 28-85 (98)
367 2nzc_A Hypothetical protein; s 21.0 1.3E+02 0.0044 20.0 4.0 63 83-148 20-83 (86)
368 4dqz_A Methyltransferase type 20.8 57 0.0019 25.8 2.5 59 71-130 118-180 (230)
369 1rlh_A Conserved hypothetical 20.5 2.7E+02 0.0093 20.8 7.8 36 67-102 23-58 (173)
370 1sxv_A Inorganic pyrophosphata 20.1 98 0.0034 23.5 3.7 39 83-132 125-163 (172)
371 1ik9_C DNA ligase IV; DNA END 20.1 67 0.0023 17.7 2.1 15 80-94 20-34 (37)
372 1x49_A Interferon-induced, dou 20.0 2.1E+02 0.007 19.2 5.3 20 83-102 16-35 (97)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.92 E-value=4.4e-24 Score=192.06 Aligned_cols=90 Identities=23% Similarity=0.393 Sum_probs=83.6
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||+|||+.||+++|+++|.+||+|+.|.|+.++.+++++|||||+|.+.++|++||+.||++.|+|++|.|+|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 026421 147 SRRKRPRTPT 156 (238)
Q Consensus 147 a~~~~~~~~~ 156 (238)
|+++......
T Consensus 179 a~~~~~~~~~ 188 (437)
T 3pgw_S 179 ERGRTVKGWR 188 (437)
T ss_pred eCCCCCCCCC
Confidence 9977655443
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=154.59 Aligned_cols=81 Identities=33% Similarity=0.434 Sum_probs=78.5
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
.+++|||+|||.++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|++|.|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 026421 149 R 149 (238)
Q Consensus 149 ~ 149 (238)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.91 E-value=8.6e-24 Score=164.72 Aligned_cols=89 Identities=27% Similarity=0.407 Sum_probs=83.2
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+|+++|+++|++||+|+.|.|+.++.++.+++||||+|.+.++|++||+.||++.|+|+.|+
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 026421 144 VERSRRKRP 152 (238)
Q Consensus 144 V~~a~~~~~ 152 (238)
|+||++...
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999987654
No 4
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=4.1e-23 Score=149.80 Aligned_cols=91 Identities=27% Similarity=0.407 Sum_probs=84.7
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||..+++++|+++|.+||+|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCC
Q 026421 146 RSRRKRPRTPT 156 (238)
Q Consensus 146 ~a~~~~~~~~~ 156 (238)
+++++....+.
T Consensus 91 ~a~~~~~~~~~ 101 (103)
T 2cq0_A 91 WAKPSTNSGPS 101 (103)
T ss_dssp ESSCCCCSCCC
T ss_pred ECCCCCCCCCC
Confidence 99987665443
No 5
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=9.1e-23 Score=150.91 Aligned_cols=94 Identities=24% Similarity=0.405 Sum_probs=86.2
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||.++++++|+++|.+||.|+.|.|+.++.++.+++||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCC
Q 026421 144 VERSRRKRPRTPTP 157 (238)
Q Consensus 144 V~~a~~~~~~~~~~ 157 (238)
|++++++....+.+
T Consensus 99 V~~a~~~~~~~~~~ 112 (115)
T 2cpz_A 99 VQLKRSKNDSKSGP 112 (115)
T ss_dssp EECCCCSCCCCCCC
T ss_pred EEEcCCCCcCCCCC
Confidence 99999887665543
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=9.4e-23 Score=145.56 Aligned_cols=87 Identities=29% Similarity=0.398 Sum_probs=81.9
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++++++||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 026421 147 SRRKRPR 153 (238)
Q Consensus 147 a~~~~~~ 153 (238)
++++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876543
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=8e-23 Score=150.42 Aligned_cols=85 Identities=24% Similarity=0.298 Sum_probs=80.7
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||+|||+.+++++|+++|++||+|+.|.|+.+..|++++|||||+|++.++|++||+.||+..|+|+.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 026421 147 SRRKR 151 (238)
Q Consensus 147 a~~~~ 151 (238)
|....
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 97543
No 8
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=5.4e-23 Score=149.14 Aligned_cols=93 Identities=29% Similarity=0.424 Sum_probs=85.4
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCC
Q 026421 144 VERSRRKRPRTPT 156 (238)
Q Consensus 144 V~~a~~~~~~~~~ 156 (238)
|++|+++......
T Consensus 87 V~~a~~~~~~~~~ 99 (103)
T 2dnm_A 87 VQVARYGRRDLSG 99 (103)
T ss_dssp EEECSSCCSCCCC
T ss_pred EEECCcCCCCCCC
Confidence 9999977655443
No 9
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.5e-22 Score=145.71 Aligned_cols=89 Identities=30% Similarity=0.413 Sum_probs=83.2
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||..+++++|+++|.+||+|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 026421 146 RSRRKRPRT 154 (238)
Q Consensus 146 ~a~~~~~~~ 154 (238)
+++++....
T Consensus 84 ~a~~~~~~~ 92 (99)
T 1whw_A 84 PSTIKKEAS 92 (99)
T ss_dssp ECCCCSTTC
T ss_pred EcCCCcccc
Confidence 999876543
No 10
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=147.24 Aligned_cols=90 Identities=31% Similarity=0.452 Sum_probs=84.2
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||..+++++|+++|.+||+|+.|.|+.++.++.+++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 026421 146 RSRRKRPRTP 155 (238)
Q Consensus 146 ~a~~~~~~~~ 155 (238)
+++++....+
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2cqb_A 88 LAKPMRIKES 97 (102)
T ss_dssp ECCCCCCCCC
T ss_pred eCCCCCCCCC
Confidence 9998776554
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=145.69 Aligned_cols=89 Identities=20% Similarity=0.510 Sum_probs=83.2
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||..+++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred eccCCCCCCC
Q 026421 146 RSRRKRPRTP 155 (238)
Q Consensus 146 ~a~~~~~~~~ 155 (238)
+++++.....
T Consensus 85 ~a~~~~~~~~ 94 (99)
T 2dgs_A 85 RAEPRDSKSS 94 (99)
T ss_dssp ECCCCCCCCC
T ss_pred ECCCCcccCC
Confidence 9998766544
No 12
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=146.77 Aligned_cols=90 Identities=31% Similarity=0.547 Sum_probs=83.7
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||.++++++|+++|.+||+|+.|.|+.+..++.+++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 026421 145 ERSRRKRPRT 154 (238)
Q Consensus 145 ~~a~~~~~~~ 154 (238)
++++++....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x5s_A 87 DQAGKSSDNR 96 (102)
T ss_dssp EEEECCCCCC
T ss_pred EECCCCCCCC
Confidence 9998776543
No 13
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=7.7e-22 Score=145.82 Aligned_cols=91 Identities=26% Similarity=0.400 Sum_probs=84.5
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
..+..+.++|||+|||..+++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 026421 144 VERSRRKRPRT 154 (238)
Q Consensus 144 V~~a~~~~~~~ 154 (238)
|++++++....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99998776543
No 14
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=2.4e-22 Score=145.72 Aligned_cols=91 Identities=26% Similarity=0.403 Sum_probs=83.3
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++.+++||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344557899999999999999999999999999999999988 788999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCC
Q 026421 144 VERSRRKRPRTPT 156 (238)
Q Consensus 144 V~~a~~~~~~~~~ 156 (238)
|.+++++......
T Consensus 87 V~~a~~~~~~~~~ 99 (103)
T 2d9p_A 87 VALAQRKEERQSG 99 (103)
T ss_dssp EEECSSCCCCCCC
T ss_pred EEEecccccCCCC
Confidence 9999988765543
No 15
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.89 E-value=2.9e-22 Score=152.99 Aligned_cols=89 Identities=26% Similarity=0.337 Sum_probs=83.4
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|..||+|+.|.|+.++.+++++|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
++|+++...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999877554
No 16
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.89 E-value=3.2e-22 Score=145.44 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=83.0
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC---eEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG---RYI 142 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g---~~l 142 (238)
...+.++|||+|||..+++++|+++|.+||.|+.|.|+.+. ++.+++||||+|.+.++|++||+.||+..|.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999987 78899999999999999999999999999998 999
Q ss_pred EEEeccCCCCCCCC
Q 026421 143 TVERSRRKRPRTPT 156 (238)
Q Consensus 143 ~V~~a~~~~~~~~~ 156 (238)
.|++|+++..+.+.
T Consensus 90 ~V~~a~~~~~~~~~ 103 (105)
T 2dnh_A 90 VVKFADTDKESGPS 103 (105)
T ss_dssp EEEESCSSCCCSCS
T ss_pred EEEECccCcccCCC
Confidence 99999988776554
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.4e-22 Score=144.96 Aligned_cols=87 Identities=23% Similarity=0.395 Sum_probs=81.8
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASC-FLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v-~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
.+.++|||+|||..+++++|+++|.+||.|..| .|+.++.++.+++||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 026421 147 SRRKRPRT 154 (238)
Q Consensus 147 a~~~~~~~ 154 (238)
++++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98776543
No 18
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.3e-22 Score=146.20 Aligned_cols=91 Identities=27% Similarity=0.384 Sum_probs=84.3
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||+|+.|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34456789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 026421 144 VERSRRKRPRT 154 (238)
Q Consensus 144 V~~a~~~~~~~ 154 (238)
|++++++....
T Consensus 89 v~~a~~~~~~~ 99 (105)
T 1x5u_A 89 VNKASAHNKNL 99 (105)
T ss_dssp EEETTTTSCCC
T ss_pred EEECCCCCcCC
Confidence 99998776543
No 19
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.6e-22 Score=146.88 Aligned_cols=89 Identities=27% Similarity=0.412 Sum_probs=81.8
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||+|+.|.|+.++.++++++||||+|.+.++|++||+.|++ .|+|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred EEeccCCCCC
Q 026421 144 VERSRRKRPR 153 (238)
Q Consensus 144 V~~a~~~~~~ 153 (238)
|++|+++...
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999866443
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=3.4e-22 Score=146.70 Aligned_cols=92 Identities=23% Similarity=0.369 Sum_probs=85.3
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CCee
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN------QSVL 137 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~------g~~i 137 (238)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|| +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 4456678999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCeEEEEEeccCCCCCCC
Q 026421 138 EGRYITVERSRRKRPRTP 155 (238)
Q Consensus 138 ~g~~l~V~~a~~~~~~~~ 155 (238)
+|+.|.|.++.++.....
T Consensus 89 ~g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp SSCEEEEECCCCCCCCCC
T ss_pred cCEEEEEEECCCCccCCC
Confidence 999999999998765543
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=141.42 Aligned_cols=84 Identities=26% Similarity=0.365 Sum_probs=77.4
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCC
Q 026421 147 SRRK 150 (238)
Q Consensus 147 a~~~ 150 (238)
|+++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9865
No 22
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=148.38 Aligned_cols=85 Identities=31% Similarity=0.544 Sum_probs=80.0
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
.++.++|||+|||.++++++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026421 147 SRRKRP 152 (238)
Q Consensus 147 a~~~~~ 152 (238)
++++..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 986654
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=3.8e-23 Score=147.01 Aligned_cols=83 Identities=24% Similarity=0.352 Sum_probs=77.2
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CCeeCCeEEEEEec
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN-QSVLEGRYITVERS 147 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~-g~~i~g~~l~V~~a 147 (238)
+++|||+|||..+|+++|+++|++|| +|..|.|+.++.|+.++|||||+|.+.++|++||+.|+ +..|+|++|.|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999999999999999999999999999999999774 56899999999999
Q ss_pred cCCCC
Q 026421 148 RRKRP 152 (238)
Q Consensus 148 ~~~~~ 152 (238)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 24
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=6.6e-22 Score=142.62 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=81.6
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||+|..|.|+.+. ++++++||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445667899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 026421 144 VERSRRKRP 152 (238)
Q Consensus 144 V~~a~~~~~ 152 (238)
|++++++..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999987654
No 25
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=3.6e-22 Score=145.59 Aligned_cols=91 Identities=21% Similarity=0.337 Sum_probs=84.0
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVE-PRTRISRGFAFVTMDGVEDAERCIKYL-NQSVLEGRY 141 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~-~~tg~~~g~afV~f~~~e~A~~Al~~l-~g~~i~g~~ 141 (238)
.....+.++|||+|||..+++++|+++|.+||.|+.|.|+.+ ..++.+++||||+|.+.++|++||+.| |+..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344567899999999999999999999999999999999998 789999999999999999999999999 999999999
Q ss_pred EEEEeccCCCCCC
Q 026421 142 ITVERSRRKRPRT 154 (238)
Q Consensus 142 l~V~~a~~~~~~~ 154 (238)
|.|++++++....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876554
No 26
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.6e-22 Score=144.11 Aligned_cols=88 Identities=27% Similarity=0.446 Sum_probs=81.3
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPR---TRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~---tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
.+.++|||+|||..+++++|+++|++||+|..|.|+.+.. |+.+++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 6688999999999999999999999999999999999
Q ss_pred EeccCCCCCCC
Q 026421 145 ERSRRKRPRTP 155 (238)
Q Consensus 145 ~~a~~~~~~~~ 155 (238)
++++++.....
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99988765543
No 27
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=3.8e-22 Score=138.79 Aligned_cols=82 Identities=22% Similarity=0.369 Sum_probs=78.7
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
+++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|++|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 026421 150 KR 151 (238)
Q Consensus 150 ~~ 151 (238)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 28
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.4e-22 Score=142.58 Aligned_cols=86 Identities=40% Similarity=0.536 Sum_probs=81.2
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.+++||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccC
Q 026421 144 VERSRR 149 (238)
Q Consensus 144 V~~a~~ 149 (238)
|++|+.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999874
No 29
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.88 E-value=1.1e-22 Score=152.73 Aligned_cols=90 Identities=26% Similarity=0.442 Sum_probs=83.2
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+|+++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 33455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 026421 144 VERSRRKRPR 153 (238)
Q Consensus 144 V~~a~~~~~~ 153 (238)
|++|+++...
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876543
No 30
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=6.4e-22 Score=143.50 Aligned_cols=89 Identities=21% Similarity=0.363 Sum_probs=81.9
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
..+..+.++|||+|||..+++++|+++|.+|| |+.|.|+.+..+++++|||||+|.+.++|++|| .||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 44556789999999999999999999999997 999999999999999999999999999999999 7999999999999
Q ss_pred EEeccCCCCCC
Q 026421 144 VERSRRKRPRT 154 (238)
Q Consensus 144 V~~a~~~~~~~ 154 (238)
|++++++....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dng_A 87 VDIAEGRKQDK 97 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEecCCCCCC
Confidence 99998775543
No 31
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.2e-22 Score=146.79 Aligned_cols=90 Identities=23% Similarity=0.411 Sum_probs=83.3
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCce--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVA--------SCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 136 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~--------~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~ 136 (238)
....+.++|||+|||..+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.||++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeccCCCCCC
Q 026421 137 LEGRYITVERSRRKRPRT 154 (238)
Q Consensus 137 i~g~~l~V~~a~~~~~~~ 154 (238)
|.|+.|.|++++++....
T Consensus 90 ~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp ETTEECEEECSSCCCCST
T ss_pred cCCCEEEEEECCCCCCCC
Confidence 999999999998776543
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=4e-22 Score=139.30 Aligned_cols=82 Identities=33% Similarity=0.487 Sum_probs=78.6
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 026421 147 SR 148 (238)
Q Consensus 147 a~ 148 (238)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 33
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.8e-21 Score=141.07 Aligned_cols=90 Identities=29% Similarity=0.488 Sum_probs=81.6
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||.|+.|.|+.+... +++||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 445567899999999999999999999999999999999988643 789999999999999999999999999999999
Q ss_pred EEeccCCCCCCC
Q 026421 144 VERSRRKRPRTP 155 (238)
Q Consensus 144 V~~a~~~~~~~~ 155 (238)
|++++++.....
T Consensus 87 v~~a~~~~~~~~ 98 (103)
T 2cq3_A 87 VNNATARVMTNS 98 (103)
T ss_dssp EEECCSSCCCCC
T ss_pred EEEcccCCCCCC
Confidence 999998766544
No 34
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=5.7e-22 Score=144.38 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=83.1
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee---CCeE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL---EGRY 141 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i---~g~~ 141 (238)
....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.+++++|||||+|.+.++|++||+.||+..| .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456678999999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred EEEEeccCCCCCC
Q 026421 142 ITVERSRRKRPRT 154 (238)
Q Consensus 142 l~V~~a~~~~~~~ 154 (238)
|.|.+++++....
T Consensus 88 l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 88 IQVKPADSESRGG 100 (106)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEECCcccccC
Confidence 9999998776543
No 35
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=2.3e-22 Score=152.10 Aligned_cols=90 Identities=42% Similarity=0.570 Sum_probs=84.2
Q ss_pred CCCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 63 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 63 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
.....++.++|||+|||..+++++|+++|.+||+|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 026421 143 TVERSRRKRP 152 (238)
Q Consensus 143 ~V~~a~~~~~ 152 (238)
.|++++++.+
T Consensus 119 ~V~~a~~~~p 128 (129)
T 2kxn_B 119 RVDFSITKRP 128 (129)
T ss_dssp EESCCSSSSC
T ss_pred EEEEecCCCC
Confidence 9999987754
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.7e-22 Score=145.37 Aligned_cols=86 Identities=27% Similarity=0.460 Sum_probs=81.3
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..++++|||+|||..+++++|+++|.+||+|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026421 147 SRRKRP 152 (238)
Q Consensus 147 a~~~~~ 152 (238)
|+++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987643
No 37
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.6e-22 Score=143.36 Aligned_cols=86 Identities=20% Similarity=0.380 Sum_probs=80.1
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRT-RISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~t-g~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
+..+.++|||+|||..+++++|+++|.+|| |+.|.|+.+..+ +.++|||||+|.+.++|++|| .||+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445678999999999999999999999999 999999999887 899999999999999999999 79999999999999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
++++++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999877554
No 38
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=5.9e-22 Score=142.54 Aligned_cols=87 Identities=20% Similarity=0.372 Sum_probs=81.6
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCce-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE--
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVA-SCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY-- 141 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~-~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~-- 141 (238)
....+.++|||+|||..+++++|+++|.+||+|. .|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3456789999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred --EEEEeccCCC
Q 026421 142 --ITVERSRRKR 151 (238)
Q Consensus 142 --l~V~~a~~~~ 151 (238)
|+|+||++..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999997653
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=9.2e-23 Score=144.50 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=73.0
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcC--CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEG--KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G--~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
.+|||+|||.++++++|+++|.+|| .|..|.|+.++.+++++|||||+|.+.++|++||+.||+..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 026421 149 RKRPRT 154 (238)
Q Consensus 149 ~~~~~~ 154 (238)
++....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876544
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=6.6e-22 Score=141.63 Aligned_cols=84 Identities=23% Similarity=0.412 Sum_probs=80.3
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
++++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 026421 149 RKRP 152 (238)
Q Consensus 149 ~~~~ 152 (238)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 41
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=6.2e-22 Score=141.00 Aligned_cols=84 Identities=31% Similarity=0.455 Sum_probs=79.5
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.+++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eecc
Q 026421 145 ERSR 148 (238)
Q Consensus 145 ~~a~ 148 (238)
++|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 42
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4.4e-21 Score=141.46 Aligned_cols=89 Identities=27% Similarity=0.398 Sum_probs=81.4
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||.|+.|.|+.+. ++++++||||+|.+.++|++||+.||++.|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3445678999999999999999999999999999999999987 588999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 026421 144 VERSRRKRPR 153 (238)
Q Consensus 144 V~~a~~~~~~ 153 (238)
|++++.....
T Consensus 88 v~~a~~~~~~ 97 (114)
T 2do0_A 88 VKMDERALPK 97 (114)
T ss_dssp EEECSCCCCC
T ss_pred EEEcccCCCC
Confidence 9999865443
No 43
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=9.1e-22 Score=142.80 Aligned_cols=90 Identities=21% Similarity=0.345 Sum_probs=83.0
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhh-cCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-eCCeE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSK-EGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV-LEGRY 141 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~-~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~-i~g~~ 141 (238)
+.+..+.++|||+|||.++++++|+++|.+ ||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+.. |+|+.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 345567899999999999999999999999 9999999999998 89999999999999999999999999999 99999
Q ss_pred EEEEeccCCCCCC
Q 026421 142 ITVERSRRKRPRT 154 (238)
Q Consensus 142 l~V~~a~~~~~~~ 154 (238)
|.|+++.++....
T Consensus 82 l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 82 VRLSVAIPKASRV 94 (104)
T ss_dssp CCCCBCCCCCSCC
T ss_pred EEEEEccCCCcCC
Confidence 9999998765543
No 44
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.7e-21 Score=139.37 Aligned_cols=89 Identities=26% Similarity=0.369 Sum_probs=80.4
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||.|+.|.|+.+..+ .++||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 345567899999999999999999999999999999999988654 589999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 026421 144 VERSRRKRPRT 154 (238)
Q Consensus 144 V~~a~~~~~~~ 154 (238)
|++++++....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2cqi_A 87 VNWATTPSSQK 97 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEECCCCcccc
Confidence 99998865543
No 45
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.2e-21 Score=140.57 Aligned_cols=86 Identities=28% Similarity=0.357 Sum_probs=77.5
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|.+||.|+.|.|+.+ +.+++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 44556789999999999999999999999999999999654 457899999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
++++++...
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999876544
No 46
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=140.27 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=78.6
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHH----HHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLE----KHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
.+....++|||+|||+.+++++|+ ++|.+||+|+.|.|+.+..+ ++||||+|.+.++|++||+.||+..|+|+
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 345567899999999999999999 99999999999999988766 78999999999999999999999999999
Q ss_pred EEEEEeccCCCCC
Q 026421 141 YITVERSRRKRPR 153 (238)
Q Consensus 141 ~l~V~~a~~~~~~ 153 (238)
.|.|++|++....
T Consensus 81 ~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 81 KILVSLATGASGP 93 (96)
T ss_dssp EEEEEECCCSSCC
T ss_pred EEEEEEcCCCCCC
Confidence 9999999876543
No 47
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=142.84 Aligned_cols=89 Identities=25% Similarity=0.406 Sum_probs=82.7
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||+.+++++|+++|.+||+|+.|.|+.++.++.++|||||+|.+.++|++||+. |++.|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456679999999999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred EeccCCCCCC
Q 026421 145 ERSRRKRPRT 154 (238)
Q Consensus 145 ~~a~~~~~~~ 154 (238)
++++++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998776544
No 48
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=4e-22 Score=142.85 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=76.7
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCC--ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eeCCe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGK--VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS----VLEGR 140 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~--i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~----~i~g~ 140 (238)
...-.||||+|||+.+|+++|+++|++||. |..|.|+.++.|++++|||||+|.+.++|++||+.||+. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 344579999999999999999999999994 678999999999999999999999999999999999996 58999
Q ss_pred EEEEEeccC
Q 026421 141 YITVERSRR 149 (238)
Q Consensus 141 ~l~V~~a~~ 149 (238)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999974
No 49
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=8.4e-22 Score=144.49 Aligned_cols=87 Identities=25% Similarity=0.410 Sum_probs=81.7
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 026421 146 RSRRKRP 152 (238)
Q Consensus 146 ~a~~~~~ 152 (238)
+++++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987653
No 50
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.87 E-value=1.5e-21 Score=142.35 Aligned_cols=84 Identities=23% Similarity=0.307 Sum_probs=79.1
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||.|+.|.|+.+. ++++++||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455678999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEecc
Q 026421 144 VERSR 148 (238)
Q Consensus 144 V~~a~ 148 (238)
|++|+
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 51
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=140.77 Aligned_cols=85 Identities=24% Similarity=0.341 Sum_probs=80.3
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS--------CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~--------v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
..+..+.++|||+|||.++++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|++||+.||+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345667899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeCCeEEEEEecc
Q 026421 136 VLEGRYITVERSR 148 (238)
Q Consensus 136 ~i~g~~l~V~~a~ 148 (238)
.|.|+.|.|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999984
No 52
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1.4e-21 Score=144.71 Aligned_cols=84 Identities=27% Similarity=0.512 Sum_probs=75.8
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
..++|||+|||+.+++++|+++|.+||.|+.|.|+.+.. .++|||||+|.+.++|++||+.||++.|+|+.|.|.+++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 357899999999999999999999999999999998863 468999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 026421 149 RKRPRT 154 (238)
Q Consensus 149 ~~~~~~ 154 (238)
++....
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 765543
No 53
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=137.74 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=78.4
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRI-SRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~-~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
..++|||+|||.++++++|+++|.+||.|..|.|+.+..++. ++|||||+|.+.++|++||+.||+..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999887765 8999999999999999999999999999999999999
Q ss_pred cCCCC
Q 026421 148 RRKRP 152 (238)
Q Consensus 148 ~~~~~ 152 (238)
.++.+
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 54
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5.2e-21 Score=140.01 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=74.4
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-----
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG----- 139 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g----- 139 (238)
......++|||+|||+++++++|+++|.+||+|+.|.|+.+ +||||+|++.++|++||+.||++.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34456899999999999999999999999999999999865 799999999999999999999999999
Q ss_pred eEEEEEeccCCCC
Q 026421 140 RYITVERSRRKRP 152 (238)
Q Consensus 140 ~~l~V~~a~~~~~ 152 (238)
+.|.|++|+++..
T Consensus 83 ~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 83 AYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEESSCCSC
T ss_pred eEEEEEeCCCCCC
Confidence 9999999987543
No 55
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.86 E-value=5.3e-21 Score=138.68 Aligned_cols=83 Identities=27% Similarity=0.378 Sum_probs=75.3
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|.+||.|+.|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 344567999999999999999999999999999999987 459999999999999999999999999999999
Q ss_pred EeccCCCCCCC
Q 026421 145 ERSRRKRPRTP 155 (238)
Q Consensus 145 ~~a~~~~~~~~ 155 (238)
++++++.....
T Consensus 78 ~~a~~~~~~~~ 88 (103)
T 2dgu_A 78 VFAKPPDQKRK 88 (103)
T ss_dssp EECCCCCCCCC
T ss_pred EEcCCCcccch
Confidence 99988765543
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=143.41 Aligned_cols=88 Identities=27% Similarity=0.394 Sum_probs=82.4
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
+....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 026421 144 VERSRRKR 151 (238)
Q Consensus 144 V~~a~~~~ 151 (238)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 57
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.8e-22 Score=148.06 Aligned_cols=84 Identities=29% Similarity=0.432 Sum_probs=79.3
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
...++|||+|||.++++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++|| .||++.|+|+.|.|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred cCCCC
Q 026421 148 RRKRP 152 (238)
Q Consensus 148 ~~~~~ 152 (238)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87654
No 58
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.86 E-value=1.6e-22 Score=167.37 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=77.4
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcC--CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEG--KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G--~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..++|||+||+++||+++|+++|.+|| .|+.|.|+.++.|++++|||||+|.+.++|++||+.||++.|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 026421 147 SRRK 150 (238)
Q Consensus 147 a~~~ 150 (238)
|+++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 59
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-20 Score=137.10 Aligned_cols=89 Identities=25% Similarity=0.403 Sum_probs=81.6
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||+|+.|.|+.++.++.++|||||+|.+.++|++||+ +++.|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 4455678999999999999999999999999999999999999999999999999999999999999 57899999999
Q ss_pred EEeccCCCCCC
Q 026421 144 VERSRRKRPRT 154 (238)
Q Consensus 144 V~~a~~~~~~~ 154 (238)
|+++.++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cqg_A 87 CKLPNSKQSQD 97 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EEecCCCCcCC
Confidence 99998876543
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=2.7e-21 Score=137.13 Aligned_cols=85 Identities=26% Similarity=0.328 Sum_probs=78.7
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ++.+++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999999874 78889999999999999999999999999999999999
Q ss_pred eccCCCC
Q 026421 146 RSRRKRP 152 (238)
Q Consensus 146 ~a~~~~~ 152 (238)
++++...
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9987654
No 61
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=3.3e-22 Score=144.53 Aligned_cols=83 Identities=24% Similarity=0.357 Sum_probs=79.0
Q ss_pred CCCCEEEecCCCC------CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-e
Q 026421 68 NPGNTLYVTGLST------RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG-R 140 (238)
Q Consensus 68 ~~~~~l~V~nLp~------~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g-~ 140 (238)
...++|||+|||. .+++++|+++|++||.|..|.|+.+..|++++|||||+|.+.++|++||+.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEeccCC
Q 026421 141 YITVERSRRK 150 (238)
Q Consensus 141 ~l~V~~a~~~ 150 (238)
.|.|.+|.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999754
No 62
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=3.5e-21 Score=135.20 Aligned_cols=82 Identities=28% Similarity=0.575 Sum_probs=76.8
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999997 6888999999999
Q ss_pred Eec
Q 026421 145 ERS 147 (238)
Q Consensus 145 ~~a 147 (238)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 63
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.7e-21 Score=139.79 Aligned_cols=85 Identities=12% Similarity=0.136 Sum_probs=79.4
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
.....++|||+|||..+++++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556899999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 026421 146 RSRRK 150 (238)
Q Consensus 146 ~a~~~ 150 (238)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 64
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=138.34 Aligned_cols=84 Identities=25% Similarity=0.340 Sum_probs=78.0
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|.+||+|..|.|+.+.. +.+++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3455678999999999999999999999999999999999875 889999999999999999999999999999999999
Q ss_pred EeccC
Q 026421 145 ERSRR 149 (238)
Q Consensus 145 ~~a~~ 149 (238)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99863
No 65
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=5.3e-21 Score=143.27 Aligned_cols=91 Identities=21% Similarity=0.259 Sum_probs=84.3
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|.+||+|+.|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 355678999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCC
Q 026421 145 ERSRRKRPRTPT 156 (238)
Q Consensus 145 ~~a~~~~~~~~~ 156 (238)
++|.+.....+.
T Consensus 109 ~~a~~~~~~~~~ 120 (124)
T 2kt5_A 109 QLVASQIDLEHH 120 (124)
T ss_dssp EEECCTTCCCCC
T ss_pred EEeCCCCCCCCC
Confidence 999987766554
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=3.7e-21 Score=135.49 Aligned_cols=81 Identities=26% Similarity=0.480 Sum_probs=77.3
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|| .||+..|+|+.|.|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999999999999999999999999999 7999999999999999976
Q ss_pred CC
Q 026421 150 KR 151 (238)
Q Consensus 150 ~~ 151 (238)
+.
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 67
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=3.6e-21 Score=151.31 Aligned_cols=88 Identities=25% Similarity=0.416 Sum_probs=80.9
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||+.+++++|+++|.+||+|+.|.|+.++.++.++|||||+|.+.++|++||+.||++.|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 026421 146 RSRRKRPR 153 (238)
Q Consensus 146 ~a~~~~~~ 153 (238)
|+.++...
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99877544
No 68
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=1.6e-21 Score=144.77 Aligned_cols=85 Identities=26% Similarity=0.421 Sum_probs=79.6
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||.++++++|+++|.+||+|+.|.|+.++.+++++|||||+|.+.++|++||+.||+..|+|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecc
Q 026421 144 VERSR 148 (238)
Q Consensus 144 V~~a~ 148 (238)
|++++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99984
No 69
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.6e-21 Score=137.13 Aligned_cols=85 Identities=28% Similarity=0.506 Sum_probs=77.5
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|..| ..|.|+.+..++.+++||||+|.+.++|++||+.||++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999999999999999977 46888888889999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 026421 145 ERSRRKRP 152 (238)
Q Consensus 145 ~~a~~~~~ 152 (238)
++|+++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987654
No 70
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.3e-21 Score=142.09 Aligned_cols=86 Identities=24% Similarity=0.514 Sum_probs=80.4
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
.+.++|||+|||.++++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+. +++.|+|+.|.|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4468999999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred cCCCCCC
Q 026421 148 RRKRPRT 154 (238)
Q Consensus 148 ~~~~~~~ 154 (238)
+++....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8876543
No 71
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.1e-21 Score=140.23 Aligned_cols=83 Identities=27% Similarity=0.382 Sum_probs=75.1
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ--SVLEGRYIT 143 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g--~~i~g~~l~ 143 (238)
...+.++|||+|||+.+|+++|+++|++||+|+.|.|+.+ +|||||+|++.++|++||+.|++ ..|.|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999999999999999999999999999865 68999999999999999998864 789999999
Q ss_pred EEeccCCCCCC
Q 026421 144 VERSRRKRPRT 154 (238)
Q Consensus 144 V~~a~~~~~~~ 154 (238)
|++|+++....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998776544
No 72
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-21 Score=147.37 Aligned_cols=85 Identities=18% Similarity=0.285 Sum_probs=78.2
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+..+.++|||+|||+.+|+++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|++||+ ||++.|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999999987777777899999999999999999999999 99999999999999
Q ss_pred eccCCC
Q 026421 146 RSRRKR 151 (238)
Q Consensus 146 ~a~~~~ 151 (238)
+|+++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997643
No 73
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=133.58 Aligned_cols=83 Identities=24% Similarity=0.401 Sum_probs=78.0
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
.....++|||+|||..+++++|+++|.+| .|..|.|+.+ .+++++|||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 789999999999999999999999 99999999999999
Q ss_pred eccCCC
Q 026421 146 RSRRKR 151 (238)
Q Consensus 146 ~a~~~~ 151 (238)
+++++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 74
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.4e-21 Score=134.50 Aligned_cols=81 Identities=27% Similarity=0.475 Sum_probs=74.8
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||.++++++|+++|.+||+|+.|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34568899999999999999999999999999999997 5799999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 026421 146 RSRRKRPRT 154 (238)
Q Consensus 146 ~a~~~~~~~ 154 (238)
+++++....
T Consensus 76 ~a~~~~~~~ 84 (90)
T 2dnq_A 76 ASKNKSKAS 84 (90)
T ss_dssp CSSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998876544
No 75
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.85 E-value=1.6e-21 Score=139.07 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=76.4
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||+|||+++++++|+++|.+||.|..|.|+.+..++++++||||+|.+.++|++||+.||++.|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 026421 147 SR 148 (238)
Q Consensus 147 a~ 148 (238)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 76
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=133.77 Aligned_cols=83 Identities=28% Similarity=0.497 Sum_probs=75.2
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 345678899999999999999999999999999999997 349999999999999999999999999999999
Q ss_pred EeccCCCCCCC
Q 026421 145 ERSRRKRPRTP 155 (238)
Q Consensus 145 ~~a~~~~~~~~ 155 (238)
++++++....+
T Consensus 77 ~~a~~~~~~~~ 87 (92)
T 2dgt_A 77 QLSTSRLRTAS 87 (92)
T ss_dssp EESSCCCSCCC
T ss_pred EEccCCCCCCC
Confidence 99987765443
No 77
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.5e-21 Score=136.73 Aligned_cols=85 Identities=26% Similarity=0.386 Sum_probs=76.1
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.+...+.++|||+|||..+++++|+++|.+||.| .|+.+ .++++++||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3455678999999999999999999999999977 45555 6788999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 026421 144 VERSRRKRP 152 (238)
Q Consensus 144 V~~a~~~~~ 152 (238)
|++++++..
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999987754
No 78
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=150.14 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=77.6
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcC--CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEG--KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G--~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..++|||+|||+++++++|+++|.+|| .|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 026421 147 SRRK 150 (238)
Q Consensus 147 a~~~ 150 (238)
|.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 79
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.2e-21 Score=139.97 Aligned_cols=85 Identities=27% Similarity=0.344 Sum_probs=78.1
Q ss_pred CCCCCEEEecCCCCCCcHHHHH---HHhhhcCCceEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLE---KHFSKEGKVASCFLVVEPRTR---ISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~---~~f~~~G~i~~v~i~~~~~tg---~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
..+.++|||+|||+.+++++|+ ++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.||+..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4457899999999999999999 999999999999999887654 4569999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 026421 141 YITVERSRRKR 151 (238)
Q Consensus 141 ~l~V~~a~~~~ 151 (238)
.|.|++|+++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998775
No 80
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-21 Score=144.18 Aligned_cols=92 Identities=30% Similarity=0.414 Sum_probs=78.3
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+|+++|+++|.+||.|..|.+..+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567899999999999999999999999999844333222237888999999999999999999999999999999999
Q ss_pred EeccCCCCCCCC
Q 026421 145 ERSRRKRPRTPT 156 (238)
Q Consensus 145 ~~a~~~~~~~~~ 156 (238)
++|+++....+.
T Consensus 100 ~~a~~~~~~~~~ 111 (115)
T 2cpx_A 100 EFGKNKKQRSSG 111 (115)
T ss_dssp EECCCCSCCCCC
T ss_pred EEccCCCCCCCC
Confidence 999988765543
No 81
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-21 Score=139.37 Aligned_cols=86 Identities=24% Similarity=0.405 Sum_probs=81.0
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 026421 148 RRKRPR 153 (238)
Q Consensus 148 ~~~~~~ 153 (238)
.++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 876543
No 82
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5.8e-21 Score=138.38 Aligned_cols=82 Identities=15% Similarity=0.245 Sum_probs=73.4
Q ss_pred CCCCCCEEEecCCCC-CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--eeCCeEE
Q 026421 66 TGNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS--VLEGRYI 142 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~--~i~g~~l 142 (238)
..+++++|||+|||+ .+|+++|+++|.+||.|+.|.|+.+ ++||||+|++.++|++||+.||+. .|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345789999999999 9999999999999999999999865 579999999999999999998864 5999999
Q ss_pred EEEeccCCCCC
Q 026421 143 TVERSRRKRPR 153 (238)
Q Consensus 143 ~V~~a~~~~~~ 153 (238)
.|++|+....-
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 1x4d_A 85 RVHLSQKYKRI 95 (102)
T ss_dssp EEEEECCCTTS
T ss_pred EEEECCCCCCC
Confidence 99999865543
No 83
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=7.4e-21 Score=136.93 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe--eCCeEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV--LEGRYI 142 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~--i~g~~l 142 (238)
....|+++|||+|||..+|+++|.++|++||.|+.|.|+.. +|||||+|++.++|++||+.|++.. |.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 44568899999999999999999999999999999998753 6899999999999999999999875 789999
Q ss_pred EEEeccCCC
Q 026421 143 TVERSRRKR 151 (238)
Q Consensus 143 ~V~~a~~~~ 151 (238)
.|++++.++
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998764
No 84
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=135.13 Aligned_cols=85 Identities=24% Similarity=0.290 Sum_probs=75.6
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCeeCCeE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL--NQSVLEGRY 141 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l--~g~~i~g~~ 141 (238)
.....++++|||+|||+.+++++|+++|++||.|+.|.|+.+ +|||||+|++.++|++||+.| ++..|.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344567899999999999999999999999999999988764 789999999999999999977 467899999
Q ss_pred EEEEeccCCCCCC
Q 026421 142 ITVERSRRKRPRT 154 (238)
Q Consensus 142 l~V~~a~~~~~~~ 154 (238)
|.|+||+.+....
T Consensus 83 l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 83 IYIQYSNHKELKT 95 (101)
T ss_dssp CEEEECSCSSCCC
T ss_pred EEEEEcCcccCcC
Confidence 9999999776554
No 85
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.84 E-value=5.9e-21 Score=140.09 Aligned_cols=88 Identities=26% Similarity=0.506 Sum_probs=77.5
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
+...+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.+ +..|+|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999965 59999999999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
+++.++..+
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999877554
No 86
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.84 E-value=1.3e-20 Score=141.01 Aligned_cols=83 Identities=23% Similarity=0.459 Sum_probs=78.3
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
+.++|||+|||.++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3689999999999999999999999999999999999999999999999999999999999 699999999999999998
Q ss_pred CCCC
Q 026421 149 RKRP 152 (238)
Q Consensus 149 ~~~~ 152 (238)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 87
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=132.22 Aligned_cols=81 Identities=28% Similarity=0.500 Sum_probs=74.1
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345678899999999999999999999999999999997 349999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
++++++...
T Consensus 76 ~~a~~~~~~ 84 (90)
T 2dnp_A 76 ELSTKGQKK 84 (90)
T ss_dssp EESCCCCCC
T ss_pred EECCCCCCC
Confidence 999877543
No 88
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=1.1e-20 Score=147.07 Aligned_cols=89 Identities=31% Similarity=0.495 Sum_probs=83.0
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 026421 146 RSRRKRPRT 154 (238)
Q Consensus 146 ~a~~~~~~~ 154 (238)
+|+++....
T Consensus 146 ~a~~~~~~~ 154 (158)
T 2kn4_A 146 MARYGRPPD 154 (158)
T ss_dssp EECCSSCCC
T ss_pred ECCCCCCCC
Confidence 998775543
No 89
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.84 E-value=3.9e-20 Score=147.15 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=81.2
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....++++|||+|||..+++++|+++|.+||+|+.|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|+|
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 026421 145 ERSRRKRP 152 (238)
Q Consensus 145 ~~a~~~~~ 152 (238)
++|.....
T Consensus 162 ~~a~~~~~ 169 (177)
T 2f3j_A 162 QLVASQID 169 (177)
T ss_dssp EEESSGGG
T ss_pred EEecCCCC
Confidence 99986544
No 90
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=2.2e-21 Score=147.79 Aligned_cols=89 Identities=31% Similarity=0.493 Sum_probs=82.8
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|++||+|+.|.|+.++.+++++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
++++++...
T Consensus 122 ~~a~~~~~~ 130 (135)
T 2lea_A 122 QMARYGRPP 130 (135)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999876544
No 91
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9e-21 Score=137.53 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=75.7
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||+++|+++|+++|.+||. +.|.|+.++ +++++|||||+|++.++|++||+ ||++.|+++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 4456789999999999999999999999995 499999997 89999999999999999999996 89999999999999
Q ss_pred eccCCC
Q 026421 146 RSRRKR 151 (238)
Q Consensus 146 ~a~~~~ 151 (238)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987543
No 92
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-21 Score=136.99 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=77.0
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred cc
Q 026421 147 SR 148 (238)
Q Consensus 147 a~ 148 (238)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 93
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=137.12 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=74.7
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--eeCCeEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS--VLEGRYI 142 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~--~i~g~~l 142 (238)
....++++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|++.++|++||+.|++. .|.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 44567899999999999999999999999999999998754 689999999999999999988654 5999999
Q ss_pred EEEeccCCCCCC
Q 026421 143 TVERSRRKRPRT 154 (238)
Q Consensus 143 ~V~~a~~~~~~~ 154 (238)
.|+|++.+....
T Consensus 84 ~V~~a~~~~~~~ 95 (104)
T 1wex_A 84 FFNYSTSKRITR 95 (104)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCccccC
Confidence 999998876544
No 94
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-21 Score=139.11 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=79.6
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCC-ceEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCeEEE
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGK-VASCFLV-VEPRTRISRGFAFVTMDGVEDAERCIKYLN--QSVLEGRYIT 143 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-i~~v~i~-~~~~tg~~~g~afV~f~~~e~A~~Al~~l~--g~~i~g~~l~ 143 (238)
.+.++|||+|||..+++++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|++||+.|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred EEeccCCCCC
Q 026421 144 VERSRRKRPR 153 (238)
Q Consensus 144 V~~a~~~~~~ 153 (238)
|+||+++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999987653
No 95
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-21 Score=146.44 Aligned_cols=88 Identities=19% Similarity=0.400 Sum_probs=81.4
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eeC
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS--CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS----VLE 138 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~--v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~----~i~ 138 (238)
....+.++|||+|||+++|+++|+++|.+||.|.. |.|+.++.|++++|||||+|.+. +|++||+.||+. .|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34466789999999999999999999999999966 99999999999999999999999 999999999999 999
Q ss_pred CeEEEEEeccCCCCC
Q 026421 139 GRYITVERSRRKRPR 153 (238)
Q Consensus 139 g~~l~V~~a~~~~~~ 153 (238)
|+.|.|++++++...
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999876544
No 96
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=139.91 Aligned_cols=84 Identities=26% Similarity=0.375 Sum_probs=75.7
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ--SVLEGRYI 142 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g--~~i~g~~l 142 (238)
....++++|||+|||+.+|+++|+++|++||.|+.|.|+.+ +|||||+|++.++|++||+.|++ ..|.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34567899999999999999999999999999999999875 78999999999999999998874 68999999
Q ss_pred EEEeccCCCCCC
Q 026421 143 TVERSRRKRPRT 154 (238)
Q Consensus 143 ~V~~a~~~~~~~ 154 (238)
.|++|+++....
T Consensus 100 ~V~~a~~k~~~~ 111 (119)
T 2ad9_A 100 YIQFSNHKELKT 111 (119)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCCCCCc
Confidence 999998876554
No 97
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.5e-21 Score=138.92 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=76.1
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||+|||+++|+++|+++|++||+|..|.|+.+.. +.++|||||+|.+.++|++||+ ++++.|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999987 9999999999999999999999 999999999999998
Q ss_pred ccC
Q 026421 147 SRR 149 (238)
Q Consensus 147 a~~ 149 (238)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 98
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=135.81 Aligned_cols=87 Identities=25% Similarity=0.303 Sum_probs=78.5
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS-CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~-v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.+....++|||+|||+.+|+++|+++|.+||.|.. |.|+.+ .+++++|||||+|.+.++|++||+. |+..|+++.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34456789999999999999999999999999988 888887 7899999999999999999999995 99999999999
Q ss_pred EEeccCCCCC
Q 026421 144 VERSRRKRPR 153 (238)
Q Consensus 144 V~~a~~~~~~ 153 (238)
|.++.++...
T Consensus 88 v~~~~~~~~~ 97 (104)
T 1wg5_A 88 IFKSSRAEVR 97 (104)
T ss_dssp EEEECTTTSC
T ss_pred EEECCHHHHH
Confidence 9999866543
No 99
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=133.00 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=73.9
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC--CeEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE--GRYIT 143 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~--g~~l~ 143 (238)
...+.++|||+|||..+++++|+++|.+||+|+.|.|+.+ ++||||+|.+.++|++||+.||+..|. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4456789999999999999999999999999999998754 679999999999999999999999999 99999
Q ss_pred EEeccCCC
Q 026421 144 VERSRRKR 151 (238)
Q Consensus 144 V~~a~~~~ 151 (238)
|++++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 100
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=137.49 Aligned_cols=85 Identities=32% Similarity=0.516 Sum_probs=78.1
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|++||+|..|.|+.+.. .++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44556789999999999999999999999999999999998853 4789999999999999999999999999999999
Q ss_pred EEeccCC
Q 026421 144 VERSRRK 150 (238)
Q Consensus 144 V~~a~~~ 150 (238)
|++++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999865
No 101
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.1e-20 Score=135.35 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=78.5
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-------
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL------- 137 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i------- 137 (238)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567899999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred -CCeEEEEEeccCC
Q 026421 138 -EGRYITVERSRRK 150 (238)
Q Consensus 138 -~g~~l~V~~a~~~ 150 (238)
.+++|.|.||.++
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999854
No 102
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.3e-20 Score=131.33 Aligned_cols=81 Identities=32% Similarity=0.427 Sum_probs=73.6
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhc--CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKE--GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~--G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
....+.++|||+|||..+++++|+++|.+| |.|..|.++ ++||||+|.+.++|++||+.||+..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345668999999999999999999999999 899988875 5799999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 026421 143 TVERSRRKRPR 153 (238)
Q Consensus 143 ~V~~a~~~~~~ 153 (238)
.|++++++...
T Consensus 82 ~v~~a~~~~~~ 92 (99)
T 2cpd_A 82 EVTLAKPVDKD 92 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 103
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=133.26 Aligned_cols=83 Identities=25% Similarity=0.391 Sum_probs=75.7
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||..+++++|+++|.+||+|..|.|+.+ ++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34456789999999999999999999999999999999854 689999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
++++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpj_A 84 RFACHSASL 92 (99)
T ss_dssp EESSCCSCC
T ss_pred EEcCCCCCC
Confidence 999876544
No 104
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=5.1e-21 Score=130.60 Aligned_cols=75 Identities=25% Similarity=0.500 Sum_probs=72.5
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
+|||+|||+++++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999999 9999999999999986
No 105
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=141.17 Aligned_cols=84 Identities=32% Similarity=0.464 Sum_probs=78.5
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 026421 144 VERS 147 (238)
Q Consensus 144 V~~a 147 (238)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 106
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.2e-21 Score=140.34 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=78.3
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCc-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKV-ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i-~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
...+.++|||+|||+.+|+++|+++|.+||.| ..|.|+.+. ++.++|||||+|.+.++|++||+. |++.|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 45567899999999999999999999999999 889999998 899999999999999999999995 999999999999
Q ss_pred EeccCCC
Q 026421 145 ERSRRKR 151 (238)
Q Consensus 145 ~~a~~~~ 151 (238)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998665
No 107
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=135.08 Aligned_cols=83 Identities=22% Similarity=0.394 Sum_probs=76.1
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999876 6899999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 026421 146 RSRRKRPRT 154 (238)
Q Consensus 146 ~a~~~~~~~ 154 (238)
|++++....
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4g_A 95 WGKESPDMT 103 (109)
T ss_dssp CCCCCCSSC
T ss_pred ecCCCCCCC
Confidence 998876543
No 108
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-22 Score=148.36 Aligned_cols=87 Identities=24% Similarity=0.357 Sum_probs=81.2
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS--------CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~--------v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
...+.++|||+|||..+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|++||+.||+..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999998 89999988999999999999999999999999999999
Q ss_pred CCeEEEEEeccCCCC
Q 026421 138 EGRYITVERSRRKRP 152 (238)
Q Consensus 138 ~g~~l~V~~a~~~~~ 152 (238)
.|+.|.|++|+++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987654
No 109
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=4.8e-21 Score=138.28 Aligned_cols=84 Identities=21% Similarity=0.389 Sum_probs=75.4
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEP-RTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~-~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
.....++|||+|||.++++++|+++|.+|| |..|.|+.+. .+++++|||||+|.+.++|++|| .||+..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 445689999999999999999999999999 9999999988 68999999999999999999999 79999999999999
Q ss_pred EeccCCC
Q 026421 145 ERSRRKR 151 (238)
Q Consensus 145 ~~a~~~~ 151 (238)
++++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998653
No 110
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=2.5e-21 Score=136.79 Aligned_cols=83 Identities=28% Similarity=0.434 Sum_probs=74.2
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
++|||+|||..+++++|+++|++||+|..|.|+.+..++.++|||||+|.+.+ |++||+.||+..|+|+.|.|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999877
Q ss_pred CCCC
Q 026421 151 RPRT 154 (238)
Q Consensus 151 ~~~~ 154 (238)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 5543
No 111
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=131.97 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=73.1
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
.....++|||+|||..+++++|+++|.+||.|. +.|+.+ .+++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445678999999999999999999999999997 666654 458899999999999999999999999999999999
Q ss_pred eccCCC
Q 026421 146 RSRRKR 151 (238)
Q Consensus 146 ~a~~~~ 151 (238)
+++++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
No 112
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=135.79 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=76.5
Q ss_pred CCCCCCEEEecCCCCCC------cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 026421 66 TGNPGNTLYVTGLSTRV------TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 139 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~------t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g 139 (238)
.....++|||+|||..+ |+++|+++|++||.|..|.|+ ..++.++|||||+|.+.++|++||+.|||..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 889999999999999999988 4678999999999999999999999999999999
Q ss_pred e-EEEEEeccCCC
Q 026421 140 R-YITVERSRRKR 151 (238)
Q Consensus 140 ~-~l~V~~a~~~~ 151 (238)
+ .|.|++|....
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 8 99999997543
No 113
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-21 Score=130.48 Aligned_cols=76 Identities=26% Similarity=0.496 Sum_probs=73.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|+ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999999999999999999999999999999988 9999999999987
No 114
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=2.8e-20 Score=138.40 Aligned_cols=84 Identities=24% Similarity=0.372 Sum_probs=77.8
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCC---ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGK---VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
.....++|||+|||+++|+++|+++|..||. |..|.|+.+.. ++++|||||+|.+.++|++||+ ||++.|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999999 89999999876 8999999999999999999999 99999999999
Q ss_pred EEEeccCCC
Q 026421 143 TVERSRRKR 151 (238)
Q Consensus 143 ~V~~a~~~~ 151 (238)
.|.+++.++
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999987543
No 115
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=4.3e-20 Score=128.95 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=70.2
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
.+..|||+||++.+|+++|+++|.+||+|+.|.|+. ++|||||+|.+.++|++||+.||+..|.|++|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999975 48999999999999999999999999999999999984
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=128.50 Aligned_cols=79 Identities=29% Similarity=0.455 Sum_probs=72.7
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL-NQSVLEGRYI 142 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l-~g~~i~g~~l 142 (238)
.....+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|++||+.| ++..|+|+.|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 344566789999999999999999999999999999999864 689999999999999999988 9999999999
Q ss_pred EEEecc
Q 026421 143 TVERSR 148 (238)
Q Consensus 143 ~V~~a~ 148 (238)
.|+||+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999985
No 117
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=8.6e-20 Score=133.82 Aligned_cols=80 Identities=28% Similarity=0.490 Sum_probs=72.8
Q ss_pred CCCCCCEEEecCCCCC-CcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 66 TGNPGNTLYVTGLSTR-VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
+..+.++|||+|||+. +++++|+++|.+||+|+.|.| +++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3455689999999999 999999999999999999998 3789999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
++++++...
T Consensus 95 ~~a~~~~~~ 103 (110)
T 1wf1_A 95 NMAGEPKPD 103 (110)
T ss_dssp EESCCCCSC
T ss_pred EECCCCCCC
Confidence 999865443
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4e-20 Score=131.41 Aligned_cols=82 Identities=32% Similarity=0.419 Sum_probs=72.2
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCC-ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CeeCCeEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGK-VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ-SVLEGRYIT 143 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g-~~i~g~~l~ 143 (238)
...+.++|||+|||.++++++|+++|.+||. |..+.|. +++||||+|.+.++|++||+.||+ ..|+|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 5555553 368999999999999999999999 999999999
Q ss_pred EEeccCCCCCC
Q 026421 144 VERSRRKRPRT 154 (238)
Q Consensus 144 V~~a~~~~~~~ 154 (238)
|++++++..+.
T Consensus 77 v~~a~~~~~~~ 87 (93)
T 2cqh_A 77 VDYSVSKKLRS 87 (93)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCccccC
Confidence 99998775543
No 119
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-21 Score=139.31 Aligned_cols=84 Identities=21% Similarity=0.339 Sum_probs=76.6
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||+|||..+++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999999888 666777788899999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 026421 147 SRRKRP 152 (238)
Q Consensus 147 a~~~~~ 152 (238)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987654
No 120
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.2e-20 Score=129.91 Aligned_cols=82 Identities=27% Similarity=0.407 Sum_probs=72.9
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
...++|||+|||.++++++|+++|.+||.|..| +.+..++. ||||+|.+.++|++||+ ||++.|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456799999999999999999999999999987 56666664 99999999999999999 9999999999999999
Q ss_pred cCCCCCCC
Q 026421 148 RRKRPRTP 155 (238)
Q Consensus 148 ~~~~~~~~ 155 (238)
.++....+
T Consensus 80 ~~~~~~~~ 87 (94)
T 2e5g_A 80 EQKEFQSP 87 (94)
T ss_dssp CCSCCCCC
T ss_pred CcCCCCCC
Confidence 87665443
No 121
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=7.2e-20 Score=134.08 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=73.0
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4455678999999999999999999999999999999997 67999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 026421 144 VERSRRKRP 152 (238)
Q Consensus 144 V~~a~~~~~ 152 (238)
|++++++..
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999987654
No 122
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=133.11 Aligned_cols=77 Identities=30% Similarity=0.460 Sum_probs=72.7
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
++|||+|||.++++++|+++|++||+|..|.|+.+ +++||||+|.+.++|++||+.||+..|+|+.|.|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999877 5789999999999999999999999999999999999877
Q ss_pred CC
Q 026421 151 RP 152 (238)
Q Consensus 151 ~~ 152 (238)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 123
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=3.8e-20 Score=136.18 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
....++|||+|||+.+++++|+++|.+|| +|..|.|+.. .++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 8999988643 368999999999999999999999999999999999
Q ss_pred eccCC
Q 026421 146 RSRRK 150 (238)
Q Consensus 146 ~a~~~ 150 (238)
+++..
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 99754
No 124
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=6.3e-20 Score=138.22 Aligned_cols=84 Identities=14% Similarity=0.282 Sum_probs=75.1
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHH----HHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLE----KHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
.+..+.++|||+|||+.+++++|+ ++|++||.|+.|.|.. ++.++|||||+|.+.++|++||+.|||..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345668899999999999999876 6999999999987753 577899999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 026421 141 YITVERSRRKR 151 (238)
Q Consensus 141 ~l~V~~a~~~~ 151 (238)
+|.|+||+.+.
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999998764
No 125
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.6e-20 Score=132.61 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=71.8
Q ss_pred CCCCCCEEEecCCCC-CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 66 TGNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
...+.++|||+|||+ .+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456789999999998 99999999999999999999985 679999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
++++++...
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999876543
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.4e-20 Score=132.72 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=72.0
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
....++|||+|||.++++++|+++|.+||.|..|.|+. .++||||+|.+.++|++||+.||+..|+|+.|.|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34578999999999999999999999999999999983 378999999999999999999999999999999999
Q ss_pred ccCC
Q 026421 147 SRRK 150 (238)
Q Consensus 147 a~~~ 150 (238)
|+++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9763
No 127
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.4e-20 Score=136.37 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=73.4
Q ss_pred CCCCCEEEecCCCCC-CcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCeEEE
Q 026421 67 GNPGNTLYVTGLSTR-VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN--QSVLEGRYIT 143 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~--g~~i~g~~l~ 143 (238)
..++++|||+|||++ +++++|+++|.+||+|..|.|+.. +|||||+|++.++|++||+.|| +..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 567899999999998 999999999999999999999743 7899999999999999999886 4569999999
Q ss_pred EEeccCCCCCC
Q 026421 144 VERSRRKRPRT 154 (238)
Q Consensus 144 V~~a~~~~~~~ 154 (238)
|++|+.+....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998776544
No 128
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=5e-20 Score=140.35 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=77.9
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCC---ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGK---VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 141 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~ 141 (238)
.+....++|||+|||+++|+++|+++|.+||. |..|.|+.++. ++++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999999999999999999999 89999999987 9999999999999999999999 9999999999
Q ss_pred EEEEeccCC
Q 026421 142 ITVERSRRK 150 (238)
Q Consensus 142 l~V~~a~~~ 150 (238)
|.|.++.++
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998654
No 129
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=3.5e-20 Score=132.63 Aligned_cols=84 Identities=18% Similarity=0.377 Sum_probs=75.6
Q ss_pred CCCCCCEEEecCCCCCCcHHHHH----HHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLE----KHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 141 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~ 141 (238)
+..++++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|++||+.||+..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45678999999999999999999 9999999999998873 4667899999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 026421 142 ITVERSRRKRP 152 (238)
Q Consensus 142 l~V~~a~~~~~ 152 (238)
|.|++++++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987643
No 130
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.1e-19 Score=127.27 Aligned_cols=83 Identities=29% Similarity=0.368 Sum_probs=73.7
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|| .+++++|+++|.+||+|..|.|. ..++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 89999999999999999999985 34789999999999999999999999999999999
Q ss_pred EeccCCCCCCC
Q 026421 145 ERSRRKRPRTP 155 (238)
Q Consensus 145 ~~a~~~~~~~~ 155 (238)
++++++....+
T Consensus 82 ~~a~~~~~~~~ 92 (97)
T 1x5p_A 82 NIARKQPMLDS 92 (97)
T ss_dssp ECCSSCCCCCS
T ss_pred EECCCCCCCCC
Confidence 99988765443
No 131
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.81 E-value=5.1e-20 Score=136.31 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=66.4
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE-----E
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY-----I 142 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~-----l 142 (238)
...++|||+|||+++++++|+++|.+||+|+.|.|+.+ +||||+|++.++|++||+.||++.|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999765 79999999999999999999999999988 6
Q ss_pred EEEeccC
Q 026421 143 TVERSRR 149 (238)
Q Consensus 143 ~V~~a~~ 149 (238)
+|+.+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 7776654
No 132
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=2.6e-19 Score=128.48 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=71.5
Q ss_pred CCCCCCCCEEEecCCCC-CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 64 TETGNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
.....+.++|||+|||. .+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456789999999998 99999999999999999999884 6899999999999999999999999999999
Q ss_pred EEEeccCC
Q 026421 143 TVERSRRK 150 (238)
Q Consensus 143 ~V~~a~~~ 150 (238)
.|++++++
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99999764
No 133
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=2.2e-20 Score=127.33 Aligned_cols=75 Identities=23% Similarity=0.360 Sum_probs=72.1
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
+|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999 6899999999999886
No 134
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=9.1e-20 Score=130.25 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=73.2
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||..+++++|+++|.+||.|..| ..++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 3467789999999999999999999999999999999999
Q ss_pred eccCCC
Q 026421 146 RSRRKR 151 (238)
Q Consensus 146 ~a~~~~ 151 (238)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 998664
No 135
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=2.9e-19 Score=145.78 Aligned_cols=86 Identities=33% Similarity=0.453 Sum_probs=78.8
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.+++++|||||+|.+.++|++||+.||+..+.|+.|.|.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 026421 146 RSRRKR 151 (238)
Q Consensus 146 ~a~~~~ 151 (238)
++....
T Consensus 91 ~~~~~~ 96 (213)
T 4f02_A 91 WSQRDP 96 (213)
T ss_dssp ECCCCT
T ss_pred cccccc
Confidence 987543
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=1.6e-19 Score=133.24 Aligned_cols=83 Identities=22% Similarity=0.333 Sum_probs=76.0
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+..++++|||+|||..+++++|+++|.+||.|..|.|+.+ +.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4567889999999999999999999999999999999865 3448999999999999999999999999999999999
Q ss_pred eccCCC
Q 026421 146 RSRRKR 151 (238)
Q Consensus 146 ~a~~~~ 151 (238)
+++++.
T Consensus 81 ~a~~~~ 86 (115)
T 3lqv_A 81 YYNANR 86 (115)
T ss_dssp ECCHHH
T ss_pred EecCCh
Confidence 998644
No 137
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-20 Score=127.82 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=68.0
Q ss_pred CCEEEecCCCCCC------cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-EE
Q 026421 70 GNTLYVTGLSTRV------TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR-YI 142 (238)
Q Consensus 70 ~~~l~V~nLp~~~------t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~-~l 142 (238)
+++|||+|||..+ ++++|+++|++||+|..|.|+ ..+++++|||||+|.+.++|++||+.|||..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 46788999999999999999999999999999999 88
Q ss_pred EE
Q 026421 143 TV 144 (238)
Q Consensus 143 ~V 144 (238)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 138
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=1.8e-20 Score=143.27 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=74.5
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
......++|||+|||+++|+++|+++|++|| |+.|.|+.++. ++++|||||+|++.++|++|| .||+..|+++.|.|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3445678999999999999999999999999 77999999876 999999999999999999999 59999999999999
Q ss_pred EeccCCC
Q 026421 145 ERSRRKR 151 (238)
Q Consensus 145 ~~a~~~~ 151 (238)
.++.++.
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 9987654
No 139
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=128.20 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=73.7
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASC-FLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v-~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
....++|||+|||+.+++++|+++|.+||.|..| .|+.+..++ .|||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 588776654 49999999999999999999999999999999
Q ss_pred eccCCC
Q 026421 146 RSRRKR 151 (238)
Q Consensus 146 ~a~~~~ 151 (238)
+|+++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998874
No 140
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=4.9e-20 Score=141.33 Aligned_cols=89 Identities=28% Similarity=0.430 Sum_probs=75.7
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCF--L---VVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 139 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~--i---~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g 139 (238)
.+..++++|||+|||+.+|+++|+++|.+||.|..|. + +....++.++|||||+|.+.++|++||+.||+..|.|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3456789999999999999999999999999987641 1 1112467889999999999999999999999999999
Q ss_pred eEEEEEeccCCCCC
Q 026421 140 RYITVERSRRKRPR 153 (238)
Q Consensus 140 ~~l~V~~a~~~~~~ 153 (238)
+.|.|++|++...+
T Consensus 120 ~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 120 KPMVVQFARSARPK 133 (143)
T ss_dssp EECEEEECCCSCC-
T ss_pred cEEEEEECCCCCCc
Confidence 99999999876544
No 141
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-20 Score=135.39 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=78.3
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCC---ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGK---VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 141 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~ 141 (238)
.+....++|||+|||+++|+++|+++|..||. |..|.|+.+.. +.++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567889999999999999999999999998 89999999887 9999999999999999999999 9999999999
Q ss_pred EEEEeccCCC
Q 026421 142 ITVERSRRKR 151 (238)
Q Consensus 142 l~V~~a~~~~ 151 (238)
|.|.++.++.
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999987643
No 142
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=131.09 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=73.4
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
...+|||+|||+.+|+++|+++|.+| .|..|.|+.+.. ++++|||||+|.+.++|++||+ ||+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 35799999999999999999999999 899999999875 8899999999999999999995 99999999999999986
Q ss_pred CC
Q 026421 149 RK 150 (238)
Q Consensus 149 ~~ 150 (238)
++
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 143
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=8.6e-20 Score=131.90 Aligned_cols=84 Identities=23% Similarity=0.454 Sum_probs=77.5
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+ ++..|+|+.|.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 34456899999999999999999999999999999999998 89999999999999999999999 9999999999999
Q ss_pred eccCCCC
Q 026421 146 RSRRKRP 152 (238)
Q Consensus 146 ~a~~~~~ 152 (238)
++.++..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9986654
No 144
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=131.74 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=71.6
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
..++|||+|||..+++++|+++|.+||.|..|.|+. .++||||+|.+.++|++||+.||+..|.|+.|.|+||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 367999999999999999999999999999998874 36899999999999999999999999999999999998
Q ss_pred CCCC
Q 026421 149 RKRP 152 (238)
Q Consensus 149 ~~~~ 152 (238)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6543
No 145
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=7.6e-19 Score=142.59 Aligned_cols=89 Identities=21% Similarity=0.403 Sum_probs=83.0
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
...++|||.|||..+++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 026421 148 RRKRPRTPT 156 (238)
Q Consensus 148 ~~~~~~~~~ 156 (238)
.++....+.
T Consensus 203 ~~~~~~~~~ 211 (216)
T 2qfj_A 203 VTPPMPLLT 211 (216)
T ss_dssp SSCSSTTSC
T ss_pred cCCCCCCCC
Confidence 987655443
No 146
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=131.00 Aligned_cols=85 Identities=18% Similarity=0.243 Sum_probs=74.1
Q ss_pred CCCCCCCEEEe--cCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-----
Q 026421 65 ETGNPGNTLYV--TGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL----- 137 (238)
Q Consensus 65 ~~~~~~~~l~V--~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i----- 137 (238)
....++.+||| +||++.+++++|+++|++||+|..|.|+.+ +|||||+|++.++|++||+.|||..|
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34467889999 779999999999999999999999988642 78999999999999999999999988
Q ss_pred CCeEEEEEeccCCCCCCC
Q 026421 138 EGRYITVERSRRKRPRTP 155 (238)
Q Consensus 138 ~g~~l~V~~a~~~~~~~~ 155 (238)
.+.+|.|.+++......|
T Consensus 94 ~g~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 94 QKITLYLNFVEKVQWSGP 111 (114)
T ss_dssp CEEECEEEEESCCCCSSC
T ss_pred CCcEEEEEecccCcccCC
Confidence 689999999986654444
No 147
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=7.1e-19 Score=137.18 Aligned_cols=84 Identities=27% Similarity=0.427 Sum_probs=80.1
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 026421 149 RKRP 152 (238)
Q Consensus 149 ~~~~ 152 (238)
++..
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 148
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=1.1e-18 Score=135.76 Aligned_cols=83 Identities=30% Similarity=0.413 Sum_probs=79.2
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998999999999999999999999999999999999999999986
Q ss_pred CCC
Q 026421 150 KRP 152 (238)
Q Consensus 150 ~~~ 152 (238)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 643
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.1e-18 Score=135.47 Aligned_cols=84 Identities=21% Similarity=0.381 Sum_probs=79.7
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q 026421 146 RSRR 149 (238)
Q Consensus 146 ~a~~ 149 (238)
||++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9863
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=5.7e-19 Score=136.43 Aligned_cols=83 Identities=25% Similarity=0.412 Sum_probs=76.1
Q ss_pred CCCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 64 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 64 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
.....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344567899999999999999999999999999999999876 478999999999999999999999999999999
Q ss_pred EEeccCCC
Q 026421 144 VERSRRKR 151 (238)
Q Consensus 144 V~~a~~~~ 151 (238)
|++++++.
T Consensus 142 v~~a~~~~ 149 (150)
T 2i2y_A 142 VELSNGEK 149 (150)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998653
No 151
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=134.83 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=74.1
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCc----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKV----ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i----~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
...++|||+|||+++|+++|+++|++||+| ..|.|+.+ .+++++|||||+|.+.++|++||+ +|++.|.++.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEE
Confidence 457899999999999999999999999975 68999988 589999999999999999999999 599999999999
Q ss_pred EEeccCC
Q 026421 144 VERSRRK 150 (238)
Q Consensus 144 V~~a~~~ 150 (238)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=8.6e-19 Score=123.37 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=70.5
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
..++|||+|||+.+++++|+++|.+| .|..|.|. +++|||||+|.+.++|++||+.||+..|+|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999885 458999999999999999999999999999999999997
Q ss_pred CCC
Q 026421 149 RKR 151 (238)
Q Consensus 149 ~~~ 151 (238)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 153
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=1.9e-19 Score=135.23 Aligned_cols=83 Identities=24% Similarity=0.334 Sum_probs=74.7
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCce--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVA--SCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~--~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
......++|||+|||+++|+++|+++|++| .|+ .|.|+.++. ++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 344567899999999999999999999999 677 899998877 9999999999999999999999 57899999999
Q ss_pred EEEeccCC
Q 026421 143 TVERSRRK 150 (238)
Q Consensus 143 ~V~~a~~~ 150 (238)
.|.++.++
T Consensus 114 ~V~~a~~~ 121 (126)
T 2hgm_A 114 EVFKSSQE 121 (126)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99998654
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=1.7e-18 Score=138.38 Aligned_cols=87 Identities=21% Similarity=0.369 Sum_probs=76.2
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||.|||..+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+ +++..|+|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~-~~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-CSCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH-hCCcEECCEEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999 489999999999999
Q ss_pred ccCCCCCC
Q 026421 147 SRRKRPRT 154 (238)
Q Consensus 147 a~~~~~~~ 154 (238)
|.++....
T Consensus 180 a~~k~~~~ 187 (196)
T 1l3k_A 180 ALSKQEMA 187 (196)
T ss_dssp CC------
T ss_pred cCChhHhc
Confidence 99887654
No 155
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=2.3e-18 Score=137.92 Aligned_cols=86 Identities=20% Similarity=0.361 Sum_probs=81.6
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026421 147 SRRKRP 152 (238)
Q Consensus 147 a~~~~~ 152 (238)
++++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987654
No 156
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=2.4e-18 Score=129.49 Aligned_cols=79 Identities=20% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEE
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGF-AFVTMDGVEDAERCIKYLNQSVLEG--RYITVE 145 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~-afV~f~~~e~A~~Al~~l~g~~i~g--~~l~V~ 145 (238)
.-..|||+||++.+|+++|.++|++||+|..|.|+.+. ++| |||+|.+.++|++||+.|||..|.+ +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34567799999999999999999999999999887642 577 9999999999999999999999988 899999
Q ss_pred eccCCCC
Q 026421 146 RSRRKRP 152 (238)
Q Consensus 146 ~a~~~~~ 152 (238)
|++++.-
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9987643
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=2.3e-18 Score=137.64 Aligned_cols=87 Identities=28% Similarity=0.550 Sum_probs=79.1
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|||+++|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeee
Confidence 345568899999999999999999999999999999999999999999999999999999999998 5999999999999
Q ss_pred EeccCCCC
Q 026421 145 ERSRRKRP 152 (238)
Q Consensus 145 ~~a~~~~~ 152 (238)
.++.....
T Consensus 87 ~~~~~~~~ 94 (196)
T 1l3k_A 87 KRAVSRED 94 (196)
T ss_dssp EECCC---
T ss_pred ecccCccc
Confidence 99976543
No 158
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=2e-18 Score=128.96 Aligned_cols=82 Identities=29% Similarity=0.371 Sum_probs=72.0
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
....+.++|||+|| ++++++|+++|++||+|..|.|+ .++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34467899999996 69999999999999999999986 34789999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 026421 145 ERSRRKRPRT 154 (238)
Q Consensus 145 ~~a~~~~~~~ 154 (238)
.+++++....
T Consensus 106 ~~a~~~~~~~ 115 (121)
T 2bz2_A 106 NIARKQPMLD 115 (121)
T ss_dssp EECCSSCC--
T ss_pred EEeCCCCCCC
Confidence 9998775544
No 159
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=2.5e-18 Score=134.14 Aligned_cols=78 Identities=18% Similarity=0.094 Sum_probs=70.6
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEEec
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG--RYITVERS 147 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g--~~l~V~~a 147 (238)
-.+|||+||++.+|+++|+++|++||+|+.|.|+.+. .++||||+|++.++|++||+.|||..|.+ +.|+|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 3568899999999999999999999999999987542 47899999999999999999999999965 99999999
Q ss_pred cCCC
Q 026421 148 RRKR 151 (238)
Q Consensus 148 ~~~~ 151 (238)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8764
No 160
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=9.1e-18 Score=125.62 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=69.5
Q ss_pred CCCCE--EEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeCC--eEE
Q 026421 68 NPGNT--LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGF-AFVTMDGVEDAERCIKYLNQSVLEG--RYI 142 (238)
Q Consensus 68 ~~~~~--l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~-afV~f~~~e~A~~Al~~l~g~~i~g--~~l 142 (238)
.++.+ |||+||++.+++++|+++|++||.|+.|.|+.. .|| |||+|.+.++|++||+.|||..|.| ..|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 34544 578999999999999999999999999998652 276 9999999999999999999999987 699
Q ss_pred EEEeccCCCC
Q 026421 143 TVERSRRKRP 152 (238)
Q Consensus 143 ~V~~a~~~~~ 152 (238)
.|++|+++..
T Consensus 95 ~V~~Ak~~~l 104 (124)
T 2e5i_A 95 KIEYARPTRL 104 (124)
T ss_dssp EEECCSCSCC
T ss_pred EEEEecCCcc
Confidence 9999987753
No 161
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=122.84 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=68.4
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
.+.++|||+|||.++++++|+++|.+||+|..|.|+.+ ++|||||+|.+.++|++|+. ....+.+..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 45789999999999999999999999999999999865 58999999999999986543 134568999999999
Q ss_pred cCCCCCC
Q 026421 148 RRKRPRT 154 (238)
Q Consensus 148 ~~~~~~~ 154 (238)
+++....
T Consensus 76 ~~~~~~~ 82 (88)
T 1wf0_A 76 EPKHNSN 82 (88)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8776543
No 162
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=119.70 Aligned_cols=77 Identities=26% Similarity=0.269 Sum_probs=67.7
Q ss_pred CCCCCE-EEecCCCCCCcHHH----HHHHhhhc-CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 67 GNPGNT-LYVTGLSTRVTERD----LEKHFSKE-GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 67 ~~~~~~-l~V~nLp~~~t~~~----L~~~f~~~-G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
.+|+.| |||.|||+.+++++ |.++|.+| |+|..| ++ |+|||+|.+.++|++||+.|||..|.|+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 345666 99999999999988 55899999 599988 23 8999999999999999999999999999
Q ss_pred EEEEEeccCCCCC
Q 026421 141 YITVERSRRKRPR 153 (238)
Q Consensus 141 ~l~V~~a~~~~~~ 153 (238)
+|+|++|+.+..-
T Consensus 75 ~i~v~~A~~~sd~ 87 (96)
T 2diu_A 75 RIIVSFTPKNREL 87 (96)
T ss_dssp CCEEESSCCSCCC
T ss_pred eEEEEecCCCcce
Confidence 9999999877543
No 163
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=127.49 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=69.0
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRT---RISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~t---g~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
....++|||+|||+++++++|+++|.+||+|. +.++.+..+ ++++|||||+|++.++|++||+.|+ .|+|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34578999999999999999999999999999 888888777 7899999999999999999999883 36677666
Q ss_pred EEeccC
Q 026421 144 VERSRR 149 (238)
Q Consensus 144 V~~a~~ 149 (238)
|..+.+
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 665543
No 164
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=3.9e-18 Score=133.60 Aligned_cols=81 Identities=21% Similarity=0.387 Sum_probs=77.5
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999989999999999999999999999999999999999999997
Q ss_pred c
Q 026421 148 R 148 (238)
Q Consensus 148 ~ 148 (238)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 165
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=4.1e-18 Score=120.37 Aligned_cols=79 Identities=23% Similarity=0.390 Sum_probs=63.2
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe--eCCeEE
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV--LEGRYI 142 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~--i~g~~l 142 (238)
....+.++|||+|||+++|+++|+++|++||+|+.|.|+.+ ++|||||+|++.++|++ |++.. +.++.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 45667899999999999999999999999999999999875 58999999999999983 45554 569999
Q ss_pred EEEeccCCCC
Q 026421 143 TVERSRRKRP 152 (238)
Q Consensus 143 ~V~~a~~~~~ 152 (238)
.|.+|.++..
T Consensus 77 ~v~~a~~k~~ 86 (89)
T 3d2w_A 77 HISNAEPKHN 86 (89)
T ss_dssp EEEECC----
T ss_pred EEEEcCCCCc
Confidence 9999987654
No 166
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.1e-18 Score=127.46 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=71.8
Q ss_pred CCEEEecCC----CCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCC
Q 026421 70 GNTLYVTGL----STRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VED----AERCIK--YLNQS 135 (238)
Q Consensus 70 ~~~l~V~nL----p~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~----A~~Al~--~l~g~ 135 (238)
.++|||+|| |+.|++++|+++|++||+|..|.++.|+.|+.++|||||+|.+ +++ |.+||+ .||+.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 9999999999999999999999999999999999999999996 433 788888 78999
Q ss_pred eeCCeEEEEEecc
Q 026421 136 VLEGRYITVERSR 148 (238)
Q Consensus 136 ~i~g~~l~V~~a~ 148 (238)
.|+|..|.|++..
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999999864
No 167
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=1.6e-18 Score=135.14 Aligned_cols=81 Identities=26% Similarity=0.486 Sum_probs=77.5
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
+..+|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+ |++..|+|+.|.|.+|+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35799999999999999999999999999999999998899999999999999999999999 99999999999999998
Q ss_pred CC
Q 026421 149 RK 150 (238)
Q Consensus 149 ~~ 150 (238)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=5.6e-18 Score=138.15 Aligned_cols=81 Identities=27% Similarity=0.499 Sum_probs=75.2
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
...+|||+|||..+++++|+++|.+||.|+.|.|+.+.. .++|||||+|.+.++|++||+.|||..|+|+.|.|.+|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 357899999999999999999999999999999998853 468999999999999999999999999999999999998
Q ss_pred CCC
Q 026421 149 RKR 151 (238)
Q Consensus 149 ~~~ 151 (238)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 754
No 169
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=6.1e-18 Score=137.49 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=73.2
Q ss_pred CCCCEEEecCCC-CCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 68 NPGNTLYVTGLS-TRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 68 ~~~~~l~V~nLp-~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
.++++|||+||| ..+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 899999999999999999999998653 78999999999999999999999999999999999
Q ss_pred ccCCC
Q 026421 147 SRRKR 151 (238)
Q Consensus 147 a~~~~ 151 (238)
++.+.
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97654
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=6.4e-18 Score=137.10 Aligned_cols=84 Identities=25% Similarity=0.340 Sum_probs=76.1
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
.+.++|||+|||.++|+++|+++|.+||+|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred cCCC
Q 026421 148 RRKR 151 (238)
Q Consensus 148 ~~~~ 151 (238)
....
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 6553
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.5e-17 Score=129.08 Aligned_cols=81 Identities=22% Similarity=0.378 Sum_probs=74.9
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
++|||+|||.++|+++|+++|++||+|..|.|+.++. ++++|||||+|.+.++|++||+.||+..|.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4899999999999999999999999999999998864 668999999999999999999999999999999999999766
Q ss_pred CC
Q 026421 151 RP 152 (238)
Q Consensus 151 ~~ 152 (238)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=5.9e-18 Score=118.42 Aligned_cols=72 Identities=19% Similarity=0.483 Sum_probs=66.7
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhc----C-------CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKE----G-------KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 136 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~ 136 (238)
.+.++|||+|||.++++++|+++|.+| | .|..|.++.+ +|||||+|.+.++|++|| .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999988754 789999999999999999 899999
Q ss_pred eCCeEEEEEe
Q 026421 137 LEGRYITVER 146 (238)
Q Consensus 137 i~g~~l~V~~ 146 (238)
|+|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=1.6e-17 Score=129.48 Aligned_cols=80 Identities=30% Similarity=0.449 Sum_probs=76.4
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEE
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG--RYITVE 145 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g--~~l~V~ 145 (238)
.+.++|||.|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 457899999999999999999999999999999999998899999999999999999999999999999988 999999
Q ss_pred ec
Q 026421 146 RS 147 (238)
Q Consensus 146 ~a 147 (238)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 174
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=2.5e-17 Score=119.94 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=73.8
Q ss_pred CCCCCEEEecCCCC-----CCcHHHHHHHhhhcCCceEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 67 GNPGNTLYVTGLST-----RVTERDLEKHFSKEGKVASCFLVVEPRT-RISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 67 ~~~~~~l~V~nLp~-----~~t~~~L~~~f~~~G~i~~v~i~~~~~t-g~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
..++++|+|.||.. +.++++|+++|++||+|..|.|+.++.+ +.++|||||+|.+.++|++|++.|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35788999999963 2378999999999999999999988654 67899999999999999999999999999999
Q ss_pred EEEEEeccC
Q 026421 141 YITVERSRR 149 (238)
Q Consensus 141 ~l~V~~a~~ 149 (238)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=2.9e-17 Score=127.62 Aligned_cols=80 Identities=35% Similarity=0.526 Sum_probs=75.2
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe--EEEEE
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR--YITVE 145 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~--~l~V~ 145 (238)
...++|||.|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|. +|.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 3568999999999999999999999999999999999998999999999999999999999999999999996 48888
Q ss_pred ec
Q 026421 146 RS 147 (238)
Q Consensus 146 ~a 147 (238)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=2.8e-17 Score=128.73 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=76.5
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCeeC---CeEEE
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTR--ISRGFAFVTMDGVEDAERCIKYLNQSVLE---GRYIT 143 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg--~~~g~afV~f~~~e~A~~Al~~l~g~~i~---g~~l~ 143 (238)
+.++|||+|||+.+|+++|+++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.||+..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998887 88999999999999999999999998776 67888
Q ss_pred EEeccCCCC
Q 026421 144 VERSRRKRP 152 (238)
Q Consensus 144 V~~a~~~~~ 152 (238)
|.++..+..
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888876544
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=4.1e-17 Score=127.84 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=73.8
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---CeEEEE
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE---GRYITV 144 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~---g~~l~V 144 (238)
.+.++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..|. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 457899999999999999999999999999999999885 5889999999999999999999999998776 489999
Q ss_pred Eecc
Q 026421 145 ERSR 148 (238)
Q Consensus 145 ~~a~ 148 (238)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9983
No 178
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-16 Score=116.08 Aligned_cols=83 Identities=22% Similarity=0.315 Sum_probs=71.1
Q ss_pred CCCCCCEEEecCCCCCCc-----------HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 66 TGNPGNTLYVTGLSTRVT-----------ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t-----------~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
...++++|+|.||..... +++|+++|.+||+|..|.| .+.. ++|||||+|.+.++|++||+.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCC
Confidence 445789999999954332 6899999999999999965 4432 689999999999999999999999
Q ss_pred CeeCCeEEEEEeccCCCC
Q 026421 135 SVLEGRYITVERSRRKRP 152 (238)
Q Consensus 135 ~~i~g~~l~V~~a~~~~~ 152 (238)
..|+|++|.|.++.++..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999987654
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.71 E-value=5.1e-17 Score=137.48 Aligned_cols=84 Identities=18% Similarity=0.373 Sum_probs=76.6
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHH----HHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLE----KHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
.+..+.++|||+|||..+++++|+ ++|.+||.|+.|.|+. +++++|||||+|.+.++|++||+.||+..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345678999999999999999966 8999999999998875 677899999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 026421 141 YITVERSRRKR 151 (238)
Q Consensus 141 ~l~V~~a~~~~ 151 (238)
.|.|.+++.+.
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999997654
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=4.1e-17 Score=128.28 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=72.4
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 146 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~ 146 (238)
..+.++|||+|||..+++++|+++|.+||.|..| ..++.++|||||+|.+.++|++||+.|||..|.|+.|.|.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3457899999999999999999999999987665 56788899999999999999999999999999999999999
Q ss_pred ccCC
Q 026421 147 SRRK 150 (238)
Q Consensus 147 a~~~ 150 (238)
|+++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9865
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.69 E-value=3.7e-17 Score=135.37 Aligned_cols=79 Identities=23% Similarity=0.324 Sum_probs=71.1
Q ss_pred CCCCCEEEecCCCCCC---------cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 67 GNPGNTLYVTGLSTRV---------TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~---------t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
....++|||+||+..+ ++++|.++|++||+|+.|.|+.. +|||||+|.+.++|+.||+.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568899999999988 79999999999999999999854 78999999999999999999999999
Q ss_pred ------------CCeEEEEEeccCCC
Q 026421 138 ------------EGRYITVERSRRKR 151 (238)
Q Consensus 138 ------------~g~~l~V~~a~~~~ 151 (238)
.|..|.|.||+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.1e-17 Score=127.82 Aligned_cols=80 Identities=28% Similarity=0.524 Sum_probs=74.6
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
++++|||+|||.++|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+ ++..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999 4678999999999986
Q ss_pred CC
Q 026421 149 RK 150 (238)
Q Consensus 149 ~~ 150 (238)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.69 E-value=1.2e-16 Score=128.68 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=72.4
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 149 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 149 (238)
.++|||+|||..+|+++|+++|.+||+|..|.|+.+. ++.++|||||+|++.++|++||+.+ +..|+|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 5799999999999999999999999999999999875 4889999999999999999999854 5699999999999875
Q ss_pred C
Q 026421 150 K 150 (238)
Q Consensus 150 ~ 150 (238)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.69 E-value=7.8e-17 Score=132.76 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=75.7
Q ss_pred CCCCCCEEEecCCCC-CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 66 TGNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
+..++++|||+|||. .+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 346789999999999 99999999999999999999999875 689999999999999999999999999999999
Q ss_pred EeccCCCC
Q 026421 145 ERSRRKRP 152 (238)
Q Consensus 145 ~~a~~~~~ 152 (238)
.+++.+..
T Consensus 105 ~~a~~~~~ 112 (229)
T 2adc_A 105 TLSKHQNV 112 (229)
T ss_dssp ECCSCCCC
T ss_pred EEecCccc
Confidence 99987643
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=7.3e-17 Score=137.14 Aligned_cols=84 Identities=24% Similarity=0.379 Sum_probs=76.9
Q ss_pred CCCCCCEEEecCCCCC-CcHHHHHHHhhhcCCceEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 66 TGNPGNTLYVTGLSTR-VTERDLEKHFSKEGKVASCFLVVEPR-TRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~i~~v~i~~~~~-tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
...+.++|||.|||.. +++++|+++|.+||.|..|.|+.+.. |+.++|||||+|.+.++|++|| .|||..|.|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 4566899999999999 99999999999999999999998876 6889999999999999999999 8999999999999
Q ss_pred EEeccCC
Q 026421 144 VERSRRK 150 (238)
Q Consensus 144 V~~a~~~ 150 (238)
|.||+++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999876
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=2e-16 Score=133.83 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=72.3
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRYITV 144 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~-g~~l~V 144 (238)
...+.++|||+|||..+++++|+++|.+||.|+.|.|+.+. +|||||+|.+.++|++||+.|||..|. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34567899999999999999999999999999999998654 589999999999999999999999999 999999
Q ss_pred Eecc
Q 026421 145 ERSR 148 (238)
Q Consensus 145 ~~a~ 148 (238)
.||+
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9986
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=2.6e-16 Score=133.25 Aligned_cols=86 Identities=20% Similarity=0.175 Sum_probs=79.4
Q ss_pred CCCCCCEEEecCCCCCC-cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 026421 66 TGNPGNTLYVTGLSTRV-TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 144 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~-t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V 144 (238)
...+.++|||.|||..+ ++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 34567899999999995 999999999999999999999886 7889999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 026421 145 ERSRRKRP 152 (238)
Q Consensus 145 ~~a~~~~~ 152 (238)
.+++++..
T Consensus 259 ~~a~~~~~ 266 (284)
T 3smz_A 259 SFCAPGPP 266 (284)
T ss_dssp EECCSSSC
T ss_pred EEecCCCc
Confidence 99987754
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=4e-16 Score=132.03 Aligned_cols=84 Identities=25% Similarity=0.339 Sum_probs=79.8
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
..++|||+|||..+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 026421 149 RKRP 152 (238)
Q Consensus 149 ~~~~ 152 (238)
++..
T Consensus 174 ~~~~ 177 (284)
T 3smz_A 174 AGQL 177 (284)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 7653
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=3.7e-17 Score=128.55 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=74.1
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||.++++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4566889999999999999999999999997766 334444667789999999999999999996 99999999999999
Q ss_pred eccCCCC
Q 026421 146 RSRRKRP 152 (238)
Q Consensus 146 ~a~~~~~ 152 (238)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987644
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=1.9e-16 Score=127.06 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=73.0
Q ss_pred CCEEEecCCCC-CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 70 GNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 70 ~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
+++|||+|||. .+++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|++||+.||+..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998764 6899999999999999999999999999999999998
Q ss_pred CCCC
Q 026421 149 RKRP 152 (238)
Q Consensus 149 ~~~~ 152 (238)
.+..
T Consensus 78 ~~~~ 81 (198)
T 1qm9_A 78 HQNV 81 (198)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 7653
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=3.1e-16 Score=127.35 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=70.0
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCc--eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe----
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKV--ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR---- 140 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i--~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~---- 140 (238)
..++++|||.|||+.+|+++|+++|++||.| +.|.|+.+. +..+|||||+|.+.++|.+||+.||+..|.+.
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 3567899999999999999999999999999 888888764 44569999999999999999999999999876
Q ss_pred EEEEEec
Q 026421 141 YITVERS 147 (238)
Q Consensus 141 ~l~V~~a 147 (238)
+|.|++|
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 5777765
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.64 E-value=5.5e-16 Score=112.75 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=71.3
Q ss_pred CCCCEEEecCC--CCCC--------cHHHHHHHhhhcCCceEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 68 NPGNTLYVTGL--STRV--------TERDLEKHFSKEGKVASCFLVVEPRT--RISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 68 ~~~~~l~V~nL--p~~~--------t~~~L~~~f~~~G~i~~v~i~~~~~t--g~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
.|+++|.|.|+ +.++ .+++|+++|++||+|+.|.|+.+..+ +.++|||||+|.+.++|++||+.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57889999998 3333 34789999999999999999988754 367899999999999999999999999
Q ss_pred eeCCeEEEEEeccC
Q 026421 136 VLEGRYITVERSRR 149 (238)
Q Consensus 136 ~i~g~~l~V~~a~~ 149 (238)
.|+|++|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=125.84 Aligned_cols=79 Identities=27% Similarity=0.354 Sum_probs=72.9
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRYITV 144 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~-g~~l~V 144 (238)
..++++|||.|||..+++++|+++|.+|| .|..|.|+.+. +|||||+|.+.++|++||+.|||..|. |+.|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 35689999999999999999999999999 99999987542 689999999999999999999999999 999999
Q ss_pred EeccCC
Q 026421 145 ERSRRK 150 (238)
Q Consensus 145 ~~a~~~ 150 (238)
.|++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999864
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=5.4e-16 Score=127.72 Aligned_cols=79 Identities=27% Similarity=0.359 Sum_probs=72.6
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRYITV 144 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~-g~~l~V 144 (238)
..+.++|||.|||..+++++|+++|.+|| .|..|.|+.+ .++||||+|.+.++|++||+.|||..|. |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 35679999999999999999999999999 9999998653 2689999999999999999999999999 999999
Q ss_pred EeccCC
Q 026421 145 ERSRRK 150 (238)
Q Consensus 145 ~~a~~~ 150 (238)
.|++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999864
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=7.7e-16 Score=129.23 Aligned_cols=78 Identities=26% Similarity=0.446 Sum_probs=72.0
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
...+.++|||+|||.++|+++|.++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3455689999999999999999999999999999999654 6899999999999999999999999999999999
Q ss_pred eccC
Q 026421 146 RSRR 149 (238)
Q Consensus 146 ~a~~ 149 (238)
++.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9875
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.63 E-value=1.6e-15 Score=112.59 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=71.5
Q ss_pred CCCEEEecCCCC-----CCcHHHHHHHhhhcCCceEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 026421 69 PGNTLYVTGLST-----RVTERDLEKHFSKEGKVASCFLVVEPR----TRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 139 (238)
Q Consensus 69 ~~~~l~V~nLp~-----~~t~~~L~~~f~~~G~i~~v~i~~~~~----tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g 139 (238)
++++|+|.||-. +-.+++|+++|++||+|..|.|+.+.. ++.++|||||+|.+.++|++||+.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 688999999843 224789999999999999999998864 45678999999999999999999999999999
Q ss_pred eEEEEEeccC
Q 026421 140 RYITVERSRR 149 (238)
Q Consensus 140 ~~l~V~~a~~ 149 (238)
++|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=1.8e-15 Score=126.96 Aligned_cols=84 Identities=26% Similarity=0.313 Sum_probs=75.4
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CCeeC---CeEEEE
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN-QSVLE---GRYITV 144 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~-g~~i~---g~~l~V 144 (238)
+.++|||+|||..+|+++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||+.|| +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 589999999999999999999999995 44544 999999
Q ss_pred EeccCCCCC
Q 026421 145 ERSRRKRPR 153 (238)
Q Consensus 145 ~~a~~~~~~ 153 (238)
.++.+....
T Consensus 174 ~~~~~~~~~ 182 (261)
T 3sde_A 174 EPMEQFDDE 182 (261)
T ss_dssp EECCCEESS
T ss_pred eeccccCcc
Confidence 999876443
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.61 E-value=1.5e-15 Score=129.02 Aligned_cols=84 Identities=24% Similarity=0.305 Sum_probs=71.4
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 147 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a 147 (238)
..++|||+|||..+++++|.++|.+|| .|..|.|+.+.. +.++|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999988765 778999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 026421 148 RRKRPR 153 (238)
Q Consensus 148 ~~~~~~ 153 (238)
.++...
T Consensus 195 ~~~~~~ 200 (292)
T 2ghp_A 195 NPLEKS 200 (292)
T ss_dssp CCC---
T ss_pred CCCccc
Confidence 876543
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=1.7e-15 Score=118.36 Aligned_cols=77 Identities=19% Similarity=0.483 Sum_probs=68.0
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhc----C-------CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKE----G-------KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
+.++|||+|||.++|+++|+++|.+| | .|..+.+..+ +|||||+|.+.++|++|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 6666766533 789999999999999999 6999999
Q ss_pred CCeEEEEEeccCCCC
Q 026421 138 EGRYITVERSRRKRP 152 (238)
Q Consensus 138 ~g~~l~V~~a~~~~~ 152 (238)
.|+.|.|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP 90 (172)
T ss_dssp TTEECEEECCSSCCC
T ss_pred cCceeeecCCcccCC
Confidence 999999999876543
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.1e-15 Score=105.83 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=65.3
Q ss_pred CCEEEecCCC-------CCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 70 GNTLYVTGLS-------TRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 70 ~~~l~V~nLp-------~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
...|.|.-.. ..+++++|+++|.+||+|+.|.|+ +.++|||||+|++.++|++||+.++ .+.+++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4567665443 458999999999999999999998 3568999999999999999999754 4679999
Q ss_pred EEEeccCCCCCCC
Q 026421 143 TVERSRRKRPRTP 155 (238)
Q Consensus 143 ~V~~a~~~~~~~~ 155 (238)
.|+|++++.....
T Consensus 83 ~V~~a~~~~~~~~ 95 (100)
T 2d9o_A 83 KISWLEGQPQDAS 95 (100)
T ss_dssp EEECSSCCCCCCS
T ss_pred EEEEccCCCCCCC
Confidence 9999987765444
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.61 E-value=4.2e-16 Score=113.19 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=62.5
Q ss_pred ecCCCCCCcHHHHHHHh------------hhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 75 VTGLSTRVTERDLEKHF------------SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 75 V~nLp~~~t~~~L~~~f------------~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
+.||+..+++++|+++| ++||+|..|.|+.+.. +.++|||||+|.+.++|++|++.|||..|+|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666777776666 9999999999998754 6889999999999999999999999999999999
Q ss_pred EEEec
Q 026421 143 TVERS 147 (238)
Q Consensus 143 ~V~~a 147 (238)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=2.5e-15 Score=120.06 Aligned_cols=77 Identities=19% Similarity=0.460 Sum_probs=66.8
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhc----C-------CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKE----G-------KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
..++|||+|||+.+++++|+++|.+| | .|..+.+. ..+|||||+|.+.++|++|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 55555553 34789999999999999999 6999999
Q ss_pred CCeEEEEEeccCCCC
Q 026421 138 EGRYITVERSRRKRP 152 (238)
Q Consensus 138 ~g~~l~V~~a~~~~~ 152 (238)
.|+.|.|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQP 90 (198)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred cCceEEEeCCCCCCC
Confidence 999999999876643
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.55 E-value=7.9e-15 Score=127.41 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=67.6
Q ss_pred CCCCCCCCEEEecC--CCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---
Q 026421 64 TETGNPGNTLYVTG--LSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE--- 138 (238)
Q Consensus 64 ~~~~~~~~~l~V~n--Lp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~--- 138 (238)
.-...++.+|||+| |+..+|+++|+++|++||+|+.|.|+. .+|||||+|++.++|++||+.|||..+.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 44567889999999 578999999999999999999987753 3789999999999999999999999873
Q ss_pred Ce--EEEEEecc
Q 026421 139 GR--YITVERSR 148 (238)
Q Consensus 139 g~--~l~V~~a~ 148 (238)
|+ .|.|.+++
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 34 67777774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.52 E-value=7.1e-14 Score=102.94 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=66.8
Q ss_pred CCCCCEEEecCCCCCC----------cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 026421 67 GNPGNTLYVTGLSTRV----------TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 136 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~----------t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~ 136 (238)
..++++|.|.|+=... .+++|+++|++||.|+.|.|..+. .+|||||+|.+.++|++||+.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567889999884321 235789999999999999886553 48999999999999999999999999
Q ss_pred eCCeEEEEEeccC
Q 026421 137 LEGRYITVERSRR 149 (238)
Q Consensus 137 i~g~~l~V~~a~~ 149 (238)
|+|+.|.|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999853
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=4.8e-13 Score=93.36 Aligned_cols=78 Identities=26% Similarity=0.291 Sum_probs=66.4
Q ss_pred CCCCCEEEecCCCC----CCcH----HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 026421 67 GNPGNTLYVTGLST----RVTE----RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 138 (238)
Q Consensus 67 ~~~~~~l~V~nLp~----~~t~----~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~ 138 (238)
.+|..||+|.-++. .+.. .+|.+.|.+||+|..|+|+.+ .+||+|.+.++|.+||+ |||..|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 46778888887662 2323 678999999999999999876 38999999999999999 9999999
Q ss_pred CeEEEEEeccCCCCC
Q 026421 139 GRYITVERSRRKRPR 153 (238)
Q Consensus 139 g~~l~V~~a~~~~~~ 153 (238)
|+.|+|+++++.+..
T Consensus 75 Gr~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 75 NRTITIALKSPSGPS 89 (91)
T ss_dssp TEEEEEEECCCSSCS
T ss_pred CeEEEEEeCCCCccc
Confidence 999999999987653
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.8e-13 Score=98.60 Aligned_cols=79 Identities=19% Similarity=0.134 Sum_probs=70.2
Q ss_pred CCCCCCCEEEecCCCCC-CcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CCeeCCe
Q 026421 65 ETGNPGNTLYVTGLSTR-VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG-VEDAERCIKYLN--QSVLEGR 140 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~-~e~A~~Al~~l~--g~~i~g~ 140 (238)
-...+++.|||+||+.. +++++|+++|++||+|..|.|+.+.. .|||.|.+ .++|++||+.|| +..|.+.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34578999999999999 99999999999999999999988754 69999999 899999999994 6789999
Q ss_pred EEEEEeccC
Q 026421 141 YITVERSRR 149 (238)
Q Consensus 141 ~l~V~~a~~ 149 (238)
.|+|+....
T Consensus 87 ~~~~evL~G 95 (121)
T 1owx_A 87 EVTWEVLEG 95 (121)
T ss_dssp SEEEEECCH
T ss_pred EEEEEECCC
Confidence 999887653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=4.9e-12 Score=88.67 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=63.8
Q ss_pred CCCCCCCEEEecCCCCC------Cc---HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 65 ETGNPGNTLYVTGLSTR------VT---ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~------~t---~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
.-.+|..||+|.-++.. .. -.+|.+.|.+||+|..|+|+.+ -+||+|.+.++|.+||+ |||.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCe
Confidence 34577889999888642 22 1568999999999999999977 39999999999999999 9999
Q ss_pred eeCCeEEEEEecc
Q 026421 136 VLEGRYITVERSR 148 (238)
Q Consensus 136 ~i~g~~l~V~~a~ 148 (238)
.|+|+.|+|++..
T Consensus 81 ~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 81 KVKGRAVKISGPS 93 (95)
T ss_dssp EETTEEEEEECCC
T ss_pred eeCCeEEEEeccC
Confidence 9999999999864
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.14 E-value=2.5e-10 Score=93.21 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=66.1
Q ss_pred CCEEEecCCCC-----CCcHHHHHHHhhhcCCceEEEEeecC----CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 70 GNTLYVTGLST-----RVTERDLEKHFSKEGKVASCFLVVEP----RTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 70 ~~~l~V~nLp~-----~~t~~~L~~~f~~~G~i~~v~i~~~~----~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
...|.+.|+-. .-.+++|.+.|.+||.|..|.|+.+. .++.++|++||+|.+.++|++||+.|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44555555432 34568899999999999999998554 3458899999999999999999999999999999
Q ss_pred EEEEEecc
Q 026421 141 YITVERSR 148 (238)
Q Consensus 141 ~l~V~~a~ 148 (238)
+|.|.++.
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999975
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=6.9e-09 Score=74.21 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=66.4
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhc-----CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKE-----GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~-----G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
+...+|-|-|||..|+.+.|..+++++ |.|+.|.+..+. +-|+|+|.+...|-+|.-.|+|.+|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346789999999999999999999999 999999998874 479999999999999998899999999999
Q ss_pred EEEe
Q 026421 143 TVER 146 (238)
Q Consensus 143 ~V~~ 146 (238)
.|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.36 E-value=1.2e-06 Score=62.34 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=63.7
Q ss_pred CCCEEEecCCCCCC-c----HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 69 PGNTLYVTGLSTRV-T----ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 69 ~~~~l~V~nLp~~~-t----~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
..++|+|.||+.+| + .+.|+++|..|+++....++..- .=..|.|.++++|.+|-..|++..|+|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998855 2 25788999999999887776542 2478999999999999999999999999999
Q ss_pred EEeccCC
Q 026421 144 VERSRRK 150 (238)
Q Consensus 144 V~~a~~~ 150 (238)
|-++++.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9999844
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=5.7e-06 Score=58.58 Aligned_cols=75 Identities=23% Similarity=0.258 Sum_probs=62.5
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhc-----CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKE-----GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 142 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~-----G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l 142 (238)
....+|.|.|||..+.++.|+-+|+.- |+|..|+... +-|+|+|.+.+.|+..|+ ...+.|++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 356899999999999999999999872 5888888753 479999999999999998 44789999999
Q ss_pred EEEeccCCC
Q 026421 143 TVERSRRKR 151 (238)
Q Consensus 143 ~V~~a~~~~ 151 (238)
.|....+..
T Consensus 77 sV~P~~~~~ 85 (104)
T 2dhx_A 77 SLRPAPPRA 85 (104)
T ss_dssp EEEECCCCC
T ss_pred EEEcCCCCC
Confidence 997755443
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.32 E-value=4.4e-06 Score=58.29 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=62.1
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCeeCCe-----EEE
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRI--SRGFAFVTMDGVEDAERCIKYLNQSVLEGR-----YIT 143 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~--~~g~afV~f~~~e~A~~Al~~l~g~~i~g~-----~l~ 143 (238)
++|.|.+||+.+||+++.+.+..+.++....++..+.+.. ...-|||.|.+.+++....+.++|+.|.+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5899999999999999999999998877777766554332 235699999999999999999999977432 345
Q ss_pred EEecc
Q 026421 144 VERSR 148 (238)
Q Consensus 144 V~~a~ 148 (238)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 67764
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.18 E-value=6.6e-06 Score=60.04 Aligned_cols=73 Identities=10% Similarity=0.143 Sum_probs=59.6
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-eEEEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG-RYITVE 145 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g-~~l~V~ 145 (238)
....+.|.|.++|+.. ...|...|++||+|++..... ...+..|.|.+..+|++||. .||..|++ ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3446789999999885 566788999999999887621 24699999999999999999 79999984 677777
Q ss_pred ec
Q 026421 146 RS 147 (238)
Q Consensus 146 ~a 147 (238)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 74
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.12 E-value=1.4e-05 Score=55.99 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=45.8
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
...++| ++|+++...||.++|..||.| .|.++.|. .|||.|.+++.|..||..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 345556 999999999999999999944 56666653 89999999999999999764
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.89 E-value=2.3e-05 Score=55.09 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=56.4
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCc--ceEEEEEeCCHHHHHHHHHHhCCCeeCCe-----EE
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRIS--RGFAFVTMDGVEDAERCIKYLNQSVLEGR-----YI 142 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~--~g~afV~f~~~e~A~~Al~~l~g~~i~g~-----~l 142 (238)
+-+|.|..||+.+||+++.+.+..+=++....++..+.+.+. -.-|||.|.+.+++....+.++|..|.+. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 568999999999999998888876644433333322222211 24589999999999999999999877432 45
Q ss_pred EEEecc
Q 026421 143 TVERSR 148 (238)
Q Consensus 143 ~V~~a~ 148 (238)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 567763
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.89 E-value=1.7e-05 Score=55.70 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=45.1
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
.++| ++|+++...||.++|..|| -..|.++.|. .|||.|.+++.|..||..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4556 9999999999999999999 4456666653 89999999999999999774
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.63 E-value=7.4e-05 Score=55.24 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=56.5
Q ss_pred CCCEEEecCCCCCCcHHHHHHHhhhcCCceEE-EEee------------cCCCC-CcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 69 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASC-FLVV------------EPRTR-ISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 69 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v-~i~~------------~~~tg-~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
..+.|.|.++|+.++. .|.+.|++||.|++- .+.. .+... ...+|..|+|.+..+|++||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3467889999877654 466789999998762 2111 00000 125689999999999999999 899
Q ss_pred CeeCCeEEEEEecc
Q 026421 135 SVLEGRYITVERSR 148 (238)
Q Consensus 135 ~~i~g~~l~V~~a~ 148 (238)
..|+|..|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988888764
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.17 E-value=0.00024 Score=63.69 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=42.4
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
..+|+|. +|..+++++|.+.|++||+|..+.+-.++ ..||+|||.+.++|++++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4689997 79999999999999999999999887653 3699999999999998765
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.01 E-value=0.00068 Score=51.48 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=29.0
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 99 SCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 99 ~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
.+.|+++.. .++|||||+|.+.++|++||+.+++.
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhccc
Confidence 466777654 57999999999999999999988764
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.81 E-value=0.0005 Score=51.91 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=37.1
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEEEEeccCC
Q 026421 109 RISRGFAFVTMDGVEDAERCIKYL-NQSVLEGRYITVERSRRK 150 (238)
Q Consensus 109 g~~~g~afV~f~~~e~A~~Al~~l-~g~~i~g~~l~V~~a~~~ 150 (238)
...+|+++|+|.+.++|++||+.| |+..|+| .|.|.++...
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 456899999999999999999999 9999999 9999988753
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.05 E-value=0.065 Score=48.64 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=44.7
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
..++|+ +|..+...+|.++|+.||. ..|.++.+ ..|||.|.+.+.|..+|..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 456665 8999999999999999995 45555544 3799999999999999998853
No 222
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=94.96 E-value=0.19 Score=34.42 Aligned_cols=59 Identities=10% Similarity=0.170 Sum_probs=48.8
Q ss_pred CCCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 66 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 66 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
....++-|.|-|||..+-..++.-.....|---.|..+ -|.|.|.|.+.++...||..|
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 34567889999999999999988888888877777766 357999999999999999876
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.76 E-value=0.14 Score=33.70 Aligned_cols=68 Identities=13% Similarity=0.321 Sum_probs=43.4
Q ss_pred EEEec-CCCCCCcHHHHHHHhhhcCC-----ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 72 TLYVT-GLSTRVTERDLEKHFSKEGK-----VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 72 ~l~V~-nLp~~~t~~~L~~~f~~~G~-----i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
+|||. +--..+...+|..++..-+. |-.|.|.. .|.||+... +.|+.+++.|++..+.|+.|.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 56663 22336777888888775543 45566642 389999875 56778888899999999999998
Q ss_pred ecc
Q 026421 146 RSR 148 (238)
Q Consensus 146 ~a~ 148 (238)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 875
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=84.09 E-value=2.5 Score=32.43 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=38.2
Q ss_pred CEEEecCCCC-C--------CcHHHHHHHh--hhcCCceEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHH
Q 026421 71 NTLYVTGLST-R--------VTERDLEKHF--SKEGKVASCFLVVEPRTRISRGFAFVTMDG-VEDAERCIK 130 (238)
Q Consensus 71 ~~l~V~nLp~-~--------~t~~~L~~~f--~~~G~i~~v~i~~~~~tg~~~g~afV~f~~-~e~A~~Al~ 130 (238)
.+++|.|+|. . ...++|++.| ..|.++.-. .+.... -..|+|+|+|.. ......|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-ecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 4677889887 2 3457899977 999887644 444332 247899999975 444455554
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=83.11 E-value=4.2 Score=25.57 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=42.1
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.+|.|.++.-..-...|+..|.. ..|..+.+... .+-+.|+|.+.++..++|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 46889999887788899999999 88888777543 457888888666667777743
No 226
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=80.14 E-value=4.6 Score=27.98 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=45.0
Q ss_pred ecCCCCCCcHHHHHHHh-hhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEeccCC
Q 026421 75 VTGLSTRVTERDLEKHF-SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 150 (238)
Q Consensus 75 V~nLp~~~t~~~L~~~f-~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~~ 150 (238)
|-.++..+.-+||+... ..||.-.++.+..+ -+.|-..+.++..+||+.|+-.. .-+.|+|-+..++
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVING 88 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEECC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCC-cccceEEEEecCC
Confidence 33566778888886554 67898888777622 36789999999999999876542 2223344444433
No 227
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=75.39 E-value=12 Score=23.21 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=41.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD----GVEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~----~~e~A~~Al~~l 132 (238)
.+|.|.++.-..-...|+..+.....|..+.+... .+-+.|+|. +.++..++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 36778888876667889999999888888777654 347889885 456777777754
No 228
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=66.69 E-value=17 Score=21.27 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=37.3
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC---CHHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD---GVEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~---~~e~A~~Al~~l 132 (238)
++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.+...++|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4667777766666788899988877877776543 346778886 345555666643
No 229
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=66.61 E-value=11 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=20.9
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 111 SRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 111 ~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
..||.||++...+++..+|..+.+.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 5889999999998888888766664
No 230
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=69.36 E-value=1.3 Score=31.32 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=39.3
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcc-eEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISR-GFAFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~-g~afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
..||-|..+ ..+++|..|+.+.+ +..+.+......|+.- -.-|=.|.+.++|.+|++.|....-...
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~~ 92 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKN 92 (106)
Confidence 445555433 45667777777776 3445554433333221 1224478999999999998865443333
No 231
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=65.31 E-value=1.4 Score=30.89 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCCEEEecCCCCCCcHHH
Q 026421 68 NPGNTLYVTGLSTRVTERD 86 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~ 86 (238)
...++|||.|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999999864
No 232
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=65.29 E-value=11 Score=22.94 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=39.2
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC---CHHHHHHHHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD---GVEDAERCIKY 131 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~---~~e~A~~Al~~ 131 (238)
.++.|.++.-..-...|+..+.....|..+.+... .+-+.|+|. +.++..++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 36778888877677889999999888888777554 346788874 34555566663
No 233
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=65.22 E-value=18 Score=24.50 Aligned_cols=55 Identities=7% Similarity=0.029 Sum_probs=34.6
Q ss_pred EEecCCCCCCcHHHHHHHhhh-cC--CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 73 LYVTGLSTRVTERDLEKHFSK-EG--KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~-~G--~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
|.+-.+|..++-++|.+.+.. |. .-..+.|....+.| -+|++.+-++.+.||..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCC-----CcccccCHHHHHHHHHHH
Confidence 556678889999888765543 22 11223333222223 468999999999999854
No 234
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=64.64 E-value=1.2 Score=32.95 Aligned_cols=7 Identities=14% Similarity=0.045 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 026421 123 EDAERCI 129 (238)
Q Consensus 123 e~A~~Al 129 (238)
++...++
T Consensus 54 ~~l~~~F 60 (156)
T 1h2v_Z 54 EQIYELF 60 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 235
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=63.44 E-value=21 Score=21.20 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=37.0
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC---HHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG---VEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~---~e~A~~Al~~l 132 (238)
++.|.++....-...|+..+.....|..+.+... .+.+.|+|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 5778888765556778899988877888777544 3467888864 34445555543
No 236
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=61.66 E-value=23 Score=21.03 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=37.5
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC---HHHHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG---VEDAERCIK 130 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~---~e~A~~Al~ 130 (238)
++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~ 58 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVA 58 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHH
Confidence 5778888776667888999988877888777544 3467788864 344555555
No 237
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=61.08 E-value=28 Score=21.95 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=40.6
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD----GVEDAERCIKYL 132 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~----~~e~A~~Al~~l 132 (238)
..+|.|.++....-...|+..+.....|..+.+... .+.+.|+|. +.+....+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346788888877667789999998888888777543 347888885 345566666644
No 238
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=60.55 E-value=24 Score=20.99 Aligned_cols=56 Identities=23% Similarity=0.223 Sum_probs=37.7
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~l 132 (238)
.+|.|.++.-..-...|+..+...-.|..+.+-.. .+.+.|+|.. .+....+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778888765556778888888877877776543 3467788753 45556666643
No 239
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=58.53 E-value=6.5 Score=36.60 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=39.7
Q ss_pred CCCCCCcHHHHHHHhh----hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 77 GLSTRVTERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 77 nLp~~~t~~~L~~~f~----~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.++...+--||..+|. .+|.|+++.|...+... ...+++|.|.+.++|.+|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~-~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPE-YQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCS-EEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCc-cccccccccCCchhhhhhHHHH
Confidence 3445555567888883 67889998876654322 3457899999999999988765
No 240
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=58.19 E-value=27 Score=24.43 Aligned_cols=47 Identities=9% Similarity=0.039 Sum_probs=28.1
Q ss_pred CCcHHHHHHHhhh-cCC---ceEE-EEeecCCCCCcceEEEEEeCCHHHHHHH
Q 026421 81 RVTERDLEKHFSK-EGK---VASC-FLVVEPRTRISRGFAFVTMDGVEDAERC 128 (238)
Q Consensus 81 ~~t~~~L~~~f~~-~G~---i~~v-~i~~~~~tg~~~g~afV~f~~~e~A~~A 128 (238)
.++..+|++.+++ |+. ++.| .|......+++.|||.| |.+.+.|.+.
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 6678888776653 342 2222 33333345667788865 7888877654
No 241
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=62.36 E-value=2.2 Score=29.42 Aligned_cols=66 Identities=9% Similarity=0.151 Sum_probs=38.5
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEE-------------EeecCC----CCCcceEEEEEeCCHHHHHHHH
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCF-------------LVVEPR----TRISRGFAFVTMDGVEDAERCI 129 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~-------------i~~~~~----tg~~~g~afV~f~~~e~A~~Al 129 (238)
...++-|.|-|||..+-..++.-.....|---.|. |..+.. .-...|.|+|.|.+.++...||
T Consensus 15 ikqnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrlai 94 (137)
T 2lsl_A 15 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRLAI 94 (137)
Confidence 34567788889999877766543333222211111 111110 0112478999999998888888
Q ss_pred HHh
Q 026421 130 KYL 132 (238)
Q Consensus 130 ~~l 132 (238)
.+|
T Consensus 95 qkl 97 (137)
T 2lsl_A 95 QKL 97 (137)
Confidence 765
No 242
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=57.68 E-value=29 Score=20.99 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=37.8
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~l 132 (238)
+|.|.++....-...|+..+...-.|..+.+... .+.+.|+|.. .+....+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5677787765556778888888877877776543 3478888853 45556666644
No 243
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=57.56 E-value=26 Score=23.92 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=40.2
Q ss_pred ecCCCCCCcHHHHHHHh-hhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 75 VTGLSTRVTERDLEKHF-SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 75 V~nLp~~~t~~~L~~~f-~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
|-.++.-+.-++|+... ..||...++..+.+ --.|-..+.++..+||+.|+-.
T Consensus 33 Ii~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 33 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHC
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccC
Confidence 33566778888887655 57898888877743 3678899999999999987543
No 244
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=57.43 E-value=26 Score=20.47 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=38.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIK 130 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~ 130 (238)
.++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .+....+|+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~ 59 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAIN 59 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHH
Confidence 36788888877777889999998877877776543 3467888863 344555555
No 245
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=57.21 E-value=45 Score=23.06 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHhhhc-C---CceEE-EEeecCCCCCcceEEEEEeCCHHHHHH
Q 026421 80 TRVTERDLEKHFSKE-G---KVASC-FLVVEPRTRISRGFAFVTMDGVEDAER 127 (238)
Q Consensus 80 ~~~t~~~L~~~f~~~-G---~i~~v-~i~~~~~tg~~~g~afV~f~~~e~A~~ 127 (238)
..++..+|++.+++. + .++.| .|......+++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 467888887776543 3 23333 34444445677788865 778877765
No 246
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=57.07 E-value=22 Score=21.18 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=37.1
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~l 132 (238)
+|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 5677777665555678888888877777776543 3478888863 45556666654
No 247
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=57.03 E-value=28 Score=20.67 Aligned_cols=56 Identities=25% Similarity=0.241 Sum_probs=39.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD----GVEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~----~~e~A~~Al~~l 132 (238)
.+|.|.++....-...|+..+.....|..+.+... .+.+.|+|. +.+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35778888777777889999998887887776543 346788885 345556666644
No 248
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=56.54 E-value=19 Score=24.47 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=38.4
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEe-ecCCCCCcceEEEEEeC--CHHHHHHHHHHhCC
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLV-VEPRTRISRGFAFVTMD--GVEDAERCIKYLNQ 134 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~-~~~~tg~~~g~afV~f~--~~e~A~~Al~~l~g 134 (238)
.|.|.=....+.+..|.++..+|+.-.+|..- .+...+..-|.-+|++. +.++.++|++.|..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 44444333466777788888889854443221 12223445678888887 46777888887743
No 249
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=56.20 E-value=39 Score=22.97 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=39.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKY 131 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~ 131 (238)
.+|.|.++....-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~ 68 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAA 68 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 45778888877777889999998877887777543 3478888873 3455566663
No 250
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=56.04 E-value=32 Score=21.05 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=40.7
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~l 132 (238)
.+|.|.++....-...|+..+.....|..+.+... .+.+.|+|.. .+....+|+.+
T Consensus 10 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 10 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46788898887778889999998877777776544 3478888863 45556667654
No 251
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=55.10 E-value=19 Score=23.39 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=38.7
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~l 132 (238)
.+|.|.++....-...|+..+...-.|..+.+... .+.+.|+|.. .++..++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 36778887765556778899988888888777544 3478888853 45556666644
No 252
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=54.78 E-value=49 Score=22.79 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=29.1
Q ss_pred CCCcHHHHHHHhhhc-C---CceEE-EEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 026421 80 TRVTERDLEKHFSKE-G---KVASC-FLVVEPRTRISRGFAFVTMDGVEDAERCI 129 (238)
Q Consensus 80 ~~~t~~~L~~~f~~~-G---~i~~v-~i~~~~~tg~~~g~afV~f~~~e~A~~Al 129 (238)
..++..+|++.+++. + .++.| .|......+++.|||.| |.+.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 467788887776543 3 23333 33344445667777765 77777766553
No 253
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=54.56 E-value=24 Score=27.67 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=22.2
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCCe
Q 026421 111 SRGFAFVTMDGVEDAERCIKYLNQSV 136 (238)
Q Consensus 111 ~~g~afV~f~~~e~A~~Al~~l~g~~ 136 (238)
.+||.|||=....++..||+.+.+..
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 47899999999999999998776653
No 254
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=53.83 E-value=23 Score=23.91 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=16.8
Q ss_pred cceEEEEEeCCHHHHHHHHH
Q 026421 111 SRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 111 ~~g~afV~f~~~e~A~~Al~ 130 (238)
.....+|+|.+.++|.++..
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 35678999999999998865
No 255
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=53.56 E-value=36 Score=23.80 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=32.7
Q ss_pred EEEecCCCCCCcHHHHHHHhhhc-------CCceEEEEeecCCCCCcc--eEE-EEEeCCHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKE-------GKVASCFLVVEPRTRISR--GFA-FVTMDGVEDAER 127 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~-------G~i~~v~i~~~~~tg~~~--g~a-fV~f~~~e~A~~ 127 (238)
.|.+..|...++++++.++...+ -.|..+.+-.+.. +... .+| +++|++.++.++
T Consensus 24 HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 24 HIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 45556788888888776665543 3455666555432 2222 344 568888777654
No 256
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=53.10 E-value=63 Score=23.53 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=28.9
Q ss_pred CCcHHHHHHHhh-hcCC---ceEE-EEeecCCCCCcceEEEEEeCCHHHHHHH
Q 026421 81 RVTERDLEKHFS-KEGK---VASC-FLVVEPRTRISRGFAFVTMDGVEDAERC 128 (238)
Q Consensus 81 ~~t~~~L~~~f~-~~G~---i~~v-~i~~~~~tg~~~g~afV~f~~~e~A~~A 128 (238)
.++..+|.+.+. .|+. ++.| .|......+++.|||.| |++.+.|.+.
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 678899988775 4442 2223 23334445666777775 7788777653
No 257
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=52.98 E-value=50 Score=22.28 Aligned_cols=55 Identities=4% Similarity=-0.109 Sum_probs=33.4
Q ss_pred EEEecCCCCCCcHHHHHHHhhh-------cCCceEEEEeecCCCCCcc--eEE-EEEeCCHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSK-------EGKVASCFLVVEPRTRISR--GFA-FVTMDGVEDAER 127 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~-------~G~i~~v~i~~~~~tg~~~--g~a-fV~f~~~e~A~~ 127 (238)
.|.+-.|...++++++.++... .-.|..+.+-.+.. +..+ .++ +++|++.++.+.
T Consensus 7 HiVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 7 HVVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 3445578888887776655543 34567777665543 2222 334 578999887654
No 258
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=52.32 E-value=53 Score=22.37 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=34.5
Q ss_pred EEEecCCCCCCcHHHHHHHhhh-------cCCceEEEEeecCCC---CCcc--eEE-EEEeCCHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSK-------EGKVASCFLVVEPRT---RISR--GFA-FVTMDGVEDAER 127 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~-------~G~i~~v~i~~~~~t---g~~~--g~a-fV~f~~~e~A~~ 127 (238)
.|.+..|...++++++.++... .-.|..+.+-.+... +... .++ +++|++.++.+.
T Consensus 11 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (108)
T 1tr0_A 11 HTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQE 79 (108)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHH
Confidence 4556678888888876655443 345677776655432 2222 244 578999887654
No 259
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=52.32 E-value=35 Score=20.39 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=39.3
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHH
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKY 131 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~ 131 (238)
..+|.|.++....-...|+..+.....|..+.+... .+.+.|+|.. .+....+|+.
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346888899887777889999998877887777543 3478888864 2334455553
No 260
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=51.51 E-value=32 Score=23.93 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=25.2
Q ss_pred ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 97 VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 97 i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
|..|..... .+||-|||=....++..||+.+.+.
T Consensus 41 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 555544422 4899999999999999998866544
No 261
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=50.85 E-value=51 Score=23.23 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=33.5
Q ss_pred EEEecCCCCCCcHHHHHHHhhh-------cCCceEEEEeecCCCCCcceEE-EEEeCCHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSK-------EGKVASCFLVVEPRTRISRGFA-FVTMDGVEDAER 127 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~-------~G~i~~v~i~~~~~tg~~~g~a-fV~f~~~e~A~~ 127 (238)
.|.+..|...++++++.+++.. .-.|..+.+-.+......-.+| +++|++.++.+.
T Consensus 23 HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 23 HTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 4455678888777776555533 3457777766554321113345 568998877544
No 262
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=50.73 E-value=40 Score=24.99 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHhhh-cCC---ceEE-EEeecCCCCCcceEEEEEeCCHHHHHHH
Q 026421 80 TRVTERDLEKHFSK-EGK---VASC-FLVVEPRTRISRGFAFVTMDGVEDAERC 128 (238)
Q Consensus 80 ~~~t~~~L~~~f~~-~G~---i~~v-~i~~~~~tg~~~g~afV~f~~~e~A~~A 128 (238)
..++..||.+.+++ |+. ++.| .|......+++.|||+| |++.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 36778888887765 443 2222 22233334566777775 7787777653
No 263
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=50.62 E-value=66 Score=22.98 Aligned_cols=53 Identities=8% Similarity=0.116 Sum_probs=40.4
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 77 GLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 77 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
.++... .+++.+.+..+-.|..|..+.. ...-++.|.+.+.++....+..+.+
T Consensus 72 ~~~~~~-~~~~~~~l~~~p~V~~~~~~tG----~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 72 TVKNAD-YERFKSYIQTLPNIEFCYRIAG----AACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp EEGGGC-HHHHHHHHHTCTTEEEEEEEES----SSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EECccc-HHHHHHHHhcChhhheeeeeeC----CCCEEEEEEECCHHHHHHHHHHhcC
Confidence 344432 5678888889999999987753 3345788999999999999988865
No 264
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=50.48 E-value=39 Score=20.31 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=39.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC--HHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG--VEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~--~e~A~~Al~~l 132 (238)
.+|.|.++.-..-...|...+.....|..+.+... .+.+.|+|.. .+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~------~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA------TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT------TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCHHHHHHHHHHc
Confidence 36778888877777889999988877887777543 3467888875 34445556544
No 265
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=50.22 E-value=35 Score=20.23 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=35.8
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC---CHHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD---GVEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~---~~e~A~~Al~~l 132 (238)
+|.|.++....-...|+..+.....|..+.+... .+.+.|+|. +.+....+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHC
Confidence 5677777665556778888888877776655332 346778875 345556666644
No 266
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=49.73 E-value=25 Score=21.52 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=37.5
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD----GVEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~----~~e~A~~Al~~l 132 (238)
+|.|.++....-...|+..+.....|..+.+... .+.+.|+|. +.+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778888777677889999988877766655332 346778885 345556666654
No 267
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=49.69 E-value=50 Score=23.27 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=33.1
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD----GVEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~----~~e~A~~Al~~l 132 (238)
+|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++..++|+.+
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4566666666666667777776666665555432 236777775 345556666644
No 268
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=49.61 E-value=52 Score=22.64 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=39.6
Q ss_pred CEEEecCCCCCCcHHH--HHHHh----hh----cC-----CceEEEEeecCCCC--CcceEEEEEeCCHHHHH---HHHH
Q 026421 71 NTLYVTGLSTRVTERD--LEKHF----SK----EG-----KVASCFLVVEPRTR--ISRGFAFVTMDGVEDAE---RCIK 130 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~--L~~~f----~~----~G-----~i~~v~i~~~~~tg--~~~g~afV~f~~~e~A~---~Al~ 130 (238)
+.|.|-+||....+.. +..+| .. .+ .|..+.-.....+- ...-..+|.|....+-+ +|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 5789999998633221 33333 22 22 23333332222111 11236777887765544 4444
Q ss_pred HhCCCeeCCeEEEEE
Q 026421 131 YLNQSVLEGRYITVE 145 (238)
Q Consensus 131 ~l~g~~i~g~~l~V~ 145 (238)
......+.|.+|.+.
T Consensus 84 ~k~~vtykg~pirls 98 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHCCEEETTEEEEEE
T ss_pred HhCceeeCCcceeec
Confidence 455677899998875
No 269
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=49.59 E-value=20 Score=23.70 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=30.1
Q ss_pred CCcHHHHHHHhhhcCC-ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 026421 81 RVTERDLEKHFSKEGK-VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 143 (238)
Q Consensus 81 ~~t~~~L~~~f~~~G~-i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~ 143 (238)
--|+++|+.++..|-+ ..+|+ .+|...+-++..+|.+..+...|+-+.-+
T Consensus 32 vktedelkkyleefrkesqnik-------------vlilvsndeeldkakelaqkmeidvrtrk 82 (110)
T 2kpo_A 32 VKTEDELKKYLEEFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEIDVRTRK 82 (110)
T ss_dssp CCSHHHHHHHHHHHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eccHHHHHHHHHHHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhceeeeeee
Confidence 3588999999888853 22222 23445566777777765555565544433
No 270
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=49.01 E-value=62 Score=22.22 Aligned_cols=56 Identities=7% Similarity=0.091 Sum_probs=34.6
Q ss_pred EEEecCCCCCCcHHHHHHHhhhc-------CCceEEEEeecCCC-CCcc--eEE-EEEeCCHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKE-------GKVASCFLVVEPRT-RISR--GFA-FVTMDGVEDAER 127 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~-------G~i~~v~i~~~~~t-g~~~--g~a-fV~f~~~e~A~~ 127 (238)
.|.+..|...++++++.++...+ -.|..+.+-.+... +... .++ +++|++.++.+.
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAE 79 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHH
Confidence 45566788888888776655433 45667766655432 2222 234 579999887654
No 271
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=48.96 E-value=28 Score=24.08 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=39.3
Q ss_pred ecCCCCCCcHHHHHHHh-hhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 75 VTGLSTRVTERDLEKHF-SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 75 V~nLp~~~t~~~L~~~f-~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
|-.++.-+.-++|++.. ..||...++..+.+ --.|-..+.++..+||+.|+-.
T Consensus 44 Iiqf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 44 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHC
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccC
Confidence 33466678888886655 57898888877633 3568889999999999987543
No 272
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=48.89 E-value=23 Score=21.11 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=34.5
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
++.|.++.-..-...|+..+... .|..+.+-.. .+.+.|+|...+....+|+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLE 55 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHH
Confidence 46677776655567788888888 7877776543 3477888876533444554
No 273
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=48.78 E-value=64 Score=22.35 Aligned_cols=71 Identities=13% Similarity=0.277 Sum_probs=35.4
Q ss_pred EEEecCCCCCCcHHHHHHHhhhc--------CCceEEEEeec-----CCCCCcc-eEEEEEeCC-HHHHHHHHHH---hC
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKE--------GKVASCFLVVE-----PRTRISR-GFAFVTMDG-VEDAERCIKY---LN 133 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~--------G~i~~v~i~~~-----~~tg~~~-g~afV~f~~-~e~A~~Al~~---l~ 133 (238)
++|| |.++++++++..++..| |.|..+...-. +-..... .|.++.|.. ..++.+-|+. +|
T Consensus 12 ~~~I--l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~eler~lr~~ 89 (110)
T 2j5a_A 12 TVFA--VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQLKID 89 (110)
T ss_dssp EEEE--ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHHHHHHHC
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHHHHhCCC
Confidence 3445 45677777776665554 35665543211 1112223 477888876 4444443331 45
Q ss_pred CCeeCCeEEEE
Q 026421 134 QSVLEGRYITV 144 (238)
Q Consensus 134 g~~i~g~~l~V 144 (238)
...|--..|++
T Consensus 90 e~VlR~livk~ 100 (110)
T 2j5a_A 90 EDVIRWLNIQI 100 (110)
T ss_dssp TTEEEEEEEEE
T ss_pred cCeEEEEEEEc
Confidence 54554444443
No 274
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=48.75 E-value=67 Score=22.55 Aligned_cols=58 Identities=5% Similarity=-0.063 Sum_probs=35.3
Q ss_pred CEEEecCCCCCCcHHHHHHHhhh-------cCCceEEEEeecCCC-CCcc--eEE-EEEeCCHHHHHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSK-------EGKVASCFLVVEPRT-RISR--GFA-FVTMDGVEDAERC 128 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~-------~G~i~~v~i~~~~~t-g~~~--g~a-fV~f~~~e~A~~A 128 (238)
..|.+..|...++++++.+++.. .-.|..+.+-.+... +... -++ +++|++.++.+..
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y 90 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAY 90 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHH
Confidence 34556688889888876665543 345667766555432 2222 344 5689998876543
No 275
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=48.48 E-value=42 Score=23.53 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=36.2
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD----GVEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~----~~e~A~~Al~~l 132 (238)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|. +.++..++|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 35667777665556677788877777777766543 346777775 345556666654
No 276
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=48.30 E-value=54 Score=23.31 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=42.1
Q ss_pred EEEecCCCCCCcHHHH---HHHhhhcCCceEEEEeecCCCCCcceEEEEEe--CCHHHHHHHHHHh-------CCC---e
Q 026421 72 TLYVTGLSTRVTERDL---EKHFSKEGKVASCFLVVEPRTRISRGFAFVTM--DGVEDAERCIKYL-------NQS---V 136 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L---~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f--~~~e~A~~Al~~l-------~g~---~ 136 (238)
.|.|.++|..+..+-. +.+-..|..-+...|+ |...|.-.|.| .+.++.++||+.| .|+ .
T Consensus 44 ~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtyt 118 (170)
T 4hhu_A 44 VIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYT 118 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEE
Confidence 4667889887655432 2334455544444444 22255777777 4788888888755 333 4
Q ss_pred eCCeEEEEEec
Q 026421 137 LEGRYITVERS 147 (238)
Q Consensus 137 i~g~~l~V~~a 147 (238)
+.|..|.|.+.
T Consensus 119 l~gn~l~i~it 129 (170)
T 4hhu_A 119 LSGNRLVIVIT 129 (170)
T ss_dssp ECSSEEEEEEE
T ss_pred EeCCEEEEEEe
Confidence 56776666553
No 277
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=48.28 E-value=22 Score=23.01 Aligned_cols=57 Identities=11% Similarity=-0.033 Sum_probs=37.6
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHHh
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD-GVEDAERCIKYL 132 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~-~~e~A~~Al~~l 132 (238)
..+|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++..++|+.+
T Consensus 23 ~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~------~~~~~V~~~~~~~~i~~~i~~~ 80 (85)
T 2k2p_A 23 GLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPA------SRTVVVGGVSDAAHIAEIITAA 80 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETT------TTEEEEESCCCHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECC------CCEEEEEecCCHHHHHHHHHHc
Confidence 346777777665556778888888877877776544 336777764 455566666643
No 278
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=48.16 E-value=27 Score=22.30 Aligned_cols=65 Identities=5% Similarity=0.028 Sum_probs=40.4
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
.....|.|+-+......+.|...+...|.-..| ... +...-.-+--|.+.++|++++..|...-+
T Consensus 7 ~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i--~~~---~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 7 SGLYKVQIGAFKVKANADSLASNAEAKGFDSIV--LLK---DGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEE--EEE---TTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEE--ecC---CcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 345677778777666666777777666643333 221 11122344578999999999998865444
No 279
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=48.10 E-value=42 Score=19.99 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=39.3
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~l 132 (238)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46788888877777789999988877877776543 3467888853 45556666644
No 280
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=47.98 E-value=2.3 Score=31.77 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=16.0
Q ss_pred HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC
Q 026421 85 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD 120 (238)
Q Consensus 85 ~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~ 120 (238)
+||.++|...|.|+.+. . .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---V-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---T-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---C-----CCCeeEEeeC
Confidence 45667777777665432 2 2789999875
No 281
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=47.97 E-value=38 Score=19.49 Aligned_cols=55 Identities=25% Similarity=0.316 Sum_probs=36.4
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~l 132 (238)
+|.|.++.-..-...|...+...-.|..+.+... .+.+.|+|.. .+....+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLE------AGKVDVSFDADKVSVKDIADAIEDQ 63 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778887765555678888888877777766433 3467888863 44555666643
No 282
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=46.57 E-value=54 Score=22.60 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=23.9
Q ss_pred HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC
Q 026421 85 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG 121 (238)
Q Consensus 85 ~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~ 121 (238)
.+|.+.+...| |.+..|..+..++ .-|++++..+
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~~--~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKARN--LLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTTT--EEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECCCC--eEEEEEEEcC
Confidence 46777888887 5666666664432 4689999988
No 283
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=45.86 E-value=51 Score=22.17 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=44.0
Q ss_pred ecCCCCCCcHHHHHHHh-hhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 75 VTGLSTRVTERDLEKHF-SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 75 V~nLp~~~t~~~L~~~f-~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
|-.++.-+.-++|+... ..||...++..+.+ --.|-..+.++..+||+.|+-.. .-+.|+|-...
T Consensus 17 Ii~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~ 82 (94)
T 2jrh_A 17 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLS 82 (94)
T ss_dssp EEEECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEE
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCc-cccceEEEEEc
Confidence 33456677888876655 67898888877633 35788899999999999775432 23344544443
No 284
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=45.60 E-value=70 Score=21.84 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=44.7
Q ss_pred cCCCCCCcHHHHHHH----------hhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 026421 76 TGLSTRVTERDLEKH----------FSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 145 (238)
Q Consensus 76 ~nLp~~~t~~~L~~~----------f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~ 145 (238)
-+||.+++.+++.++ +..-|++..+.-+ .|.-..++++.-++.++..+.|..|.=+.+. .|.|.
T Consensus 9 V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv----~G~y~nisIfdv~s~~eLh~iL~~LPLfpym--~i~Vt 82 (96)
T 1mli_A 9 VKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRI----AGHYANYSVFDVPSVEALHDTLMQLPLFPYM--DIEVD 82 (96)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEe----cCCccEEEEEEcCCHHHHHHHHHhCCCCceE--EEEEE
Confidence 478988888776554 3455888888665 3545668888888998888887766554443 45554
Q ss_pred e
Q 026421 146 R 146 (238)
Q Consensus 146 ~ 146 (238)
.
T Consensus 83 p 83 (96)
T 1mli_A 83 G 83 (96)
T ss_pred E
Confidence 3
No 285
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=45.58 E-value=56 Score=20.74 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=35.0
Q ss_pred EEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 73 LYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
|.|......-.-.+|..+|.+.| .|..+.+.... +...-...|+..+.+..+++++.|..
T Consensus 8 l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 8 IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRK 68 (88)
T ss_dssp EEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 43443344445688899998887 57676665432 11111112345677777888887754
No 286
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.50 E-value=14 Score=25.28 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=16.1
Q ss_pred ecCCCCCCcHHHHHHHhhh-cCC
Q 026421 75 VTGLSTRVTERDLEKHFSK-EGK 96 (238)
Q Consensus 75 V~nLp~~~t~~~L~~~f~~-~G~ 96 (238)
|.+|...+|-+||-.+|.+ .|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 4578889999998886544 454
No 287
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=44.31 E-value=7.1 Score=32.16 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=25.9
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEee
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVV 104 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~ 104 (238)
..+.|+|||+.++..-|.+++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4678999999999999999997655555554443
No 288
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=44.07 E-value=13 Score=30.34 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=25.5
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEe
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLV 103 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~ 103 (238)
...+.|+|||..++...|.+++.. ..+..+.++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 356789999999999999999987 555544433
No 289
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=43.62 E-value=34 Score=29.60 Aligned_cols=51 Identities=16% Similarity=0.008 Sum_probs=36.9
Q ss_pred CEEEecCCCCCC----cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 71 NTLYVTGLSTRV----TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 71 ~~l~V~nLp~~~----t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
.--+|+||..-. ....+.++..+||.|..+.+. +.-+|...+++.|+.+|.
T Consensus 15 ~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~ 69 (494)
T 3swz_A 15 SLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLI 69 (494)
T ss_dssp CCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHH
Confidence 345688887532 246678888899999888763 245677789999998886
No 290
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=42.86 E-value=48 Score=19.23 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=36.4
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIK 130 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~ 130 (238)
++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .+....+|+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~ 62 (71)
T 2ldi_A 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIA 62 (71)
T ss_dssp EEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETT------TTEEEEEECTTTCCTHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHH
Confidence 5778888776666778888888877777766433 3467788863 344455555
No 291
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=42.73 E-value=45 Score=22.73 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=29.3
Q ss_pred EEecCCCCCCcHHHHHHHhhhc--------CCceEEEEeec-----CCCCCcc-eEEEEEeCCHHHHHHHHH
Q 026421 73 LYVTGLSTRVTERDLEKHFSKE--------GKVASCFLVVE-----PRTRISR-GFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~--------G~i~~v~i~~~-----~~tg~~~-g~afV~f~~~e~A~~Al~ 130 (238)
+|| |.++++++++..++..| |.|..+...-. +-..... .|.++.|....++.+-|+
T Consensus 7 ~~I--l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 7 NIV--LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp EEE--ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred EEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHH
Confidence 444 35677777776665555 45655532110 0011122 477888876555554444
No 292
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=42.16 E-value=86 Score=22.95 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=31.3
Q ss_pred HHHHhhhcCCceEEEEeecCC---------------CCCcceEEEEEeCCHHHHHHHHHH
Q 026421 87 LEKHFSKEGKVASCFLVVEPR---------------TRISRGFAFVTMDGVEDAERCIKY 131 (238)
Q Consensus 87 L~~~f~~~G~i~~v~i~~~~~---------------tg~~~g~afV~f~~~e~A~~Al~~ 131 (238)
..++|..||.+..|...-+.. .+..--|.+|+|.+.+...+++++
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 456899999887776554321 122345899999999988887754
No 293
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=41.47 E-value=32 Score=30.52 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=35.9
Q ss_pred CCCCCcHHHHHHHhh----hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 78 LSTRVTERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 78 Lp~~~t~~~L~~~f~----~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
+..+.+.-+|..+|. .||.|+.+.|...+.. .....+++.|.+.++|.+|+..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKP-RAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECC-SEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecC-ceeEEEEEEcCCHHHHHHHHHHH
Confidence 333444445666653 4577888877665432 23457889999999998888765
No 294
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=41.29 E-value=80 Score=21.31 Aligned_cols=18 Identities=17% Similarity=0.315 Sum_probs=15.2
Q ss_pred eEEEEEeCCHHHHHHHHH
Q 026421 113 GFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 113 g~afV~f~~~e~A~~Al~ 130 (238)
...+|+|.+.++|+++..
T Consensus 55 ~~viieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 55 RNVVIEFPSVQHAIDCYN 72 (99)
T ss_dssp EEEEEEESSHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHc
Confidence 578899999999988764
No 295
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.73 E-value=64 Score=21.52 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=37.1
Q ss_pred EEecCCCCCCcHHHHHHHhhhc-C-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 73 LYVTGLSTRVTERDLEKHFSKE-G-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~-G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
.|+..+....+..+|++.++++ + .|..|..+.-+. + ..-|||++..-.+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHH
Confidence 3445577889999999998764 4 566665554331 1 3359999987777666544
No 296
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=39.02 E-value=51 Score=23.61 Aligned_cols=33 Identities=9% Similarity=-0.040 Sum_probs=17.8
Q ss_pred cCCceEEEEeecCCCCCcceEEEEE-eCCHHHHHHHHH
Q 026421 94 EGKVASCFLVVEPRTRISRGFAFVT-MDGVEDAERCIK 130 (238)
Q Consensus 94 ~G~i~~v~i~~~~~tg~~~g~afV~-f~~~e~A~~Al~ 130 (238)
+-.|..|.|-.|.. ...+||. |-+.++.+.+++
T Consensus 43 ~vtVt~V~vS~Dl~----~AkVyvs~~~~~~~~~~~~~ 76 (129)
T 2e7g_A 43 NVELSKVSLTPDFS----ACRAYWKTTLSAEQNAHMEA 76 (129)
T ss_dssp TCCEEEEEECTTSC----CEEEEECCCSCHHHHHHHHH
T ss_pred eeEEEEEEECCCCc----EEEEEEEecCChhhHHHHHH
Confidence 34677888866632 2345666 545444343433
No 297
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=38.66 E-value=99 Score=21.61 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=33.3
Q ss_pred EEEecCCCCCCcHHHHHHHhhh------cCCceEEEEeecCCC----CCcc--eEE-EEEeCCHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSK------EGKVASCFLVVEPRT----RISR--GFA-FVTMDGVEDAER 127 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~------~G~i~~v~i~~~~~t----g~~~--g~a-fV~f~~~e~A~~ 127 (238)
.|.+..|...++++++.++... .-.|..+.+-.+..+ +..+ .+| +++|++.++.+.
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~ 91 (120)
T 3bn7_A 23 HQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKR 91 (120)
T ss_dssp EEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHH
Confidence 4555678888888876655443 335666666555432 1222 344 568888877543
No 298
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=38.52 E-value=86 Score=23.99 Aligned_cols=48 Identities=6% Similarity=-0.078 Sum_probs=31.2
Q ss_pred EEEecCCCCCCcHHHH--------HHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCH
Q 026421 72 TLYVTGLSTRVTERDL--------EKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGV 122 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L--------~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~ 122 (238)
.=||-.||.+++.++- +++|..+|.|..+-|..+.. ..-.|.|.|.+.
T Consensus 72 re~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~---~NpHaHim~t~R 127 (185)
T 2ns6_A 72 KEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGG---ENPHCHLMISER 127 (185)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETT---TEEEEEEEECCB
T ss_pred EEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCC---CCceEEEEEeec
Confidence 3345579999987663 33455668888887776432 245777777653
No 299
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=38.40 E-value=60 Score=21.88 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=37.7
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEe-ecCCCCCcceEEEEEeCC-HHHHHHHHHHhC
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLV-VEPRTRISRGFAFVTMDG-VEDAERCIKYLN 133 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~-~~~~tg~~~g~afV~f~~-~e~A~~Al~~l~ 133 (238)
.|.|.-....+.+..|.++..+|+.-.+|..- .+...+..-|.-+|++.- .++.++|++.|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLR 88 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHH
Confidence 45555444567777888899999854443221 122234445777888763 556677777664
No 300
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.02 E-value=86 Score=20.70 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=35.2
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD-GVEDAERCIKY 131 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~-~~e~A~~Al~~ 131 (238)
+|.|. +.-..-...|+..|...-.|..+.+-.. .+.+.|+|. +.++..++|+.
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~------~~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE------DQMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT------TTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHH
Confidence 45565 5554445778999998888888877654 346777775 45556666663
No 301
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=37.91 E-value=25 Score=24.23 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=23.6
Q ss_pred CCcHHHHHHHhhh-cCCceEEEEeecC----CCCCcceEEEEEeCCHHHHHH
Q 026421 81 RVTERDLEKHFSK-EGKVASCFLVVEP----RTRISRGFAFVTMDGVEDAER 127 (238)
Q Consensus 81 ~~t~~~L~~~f~~-~G~i~~v~i~~~~----~tg~~~g~afV~f~~~e~A~~ 127 (238)
.++..+|++.+++ |+.-.++.++..- ..+++.|||.| |.+.+.|.+
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 6677888776653 3322222233222 23555667755 555555444
No 302
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=37.10 E-value=58 Score=19.67 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=35.1
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~l 132 (238)
+|.|.++.-..-...|...+...-.|..+.+... .+.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (80)
T 1jww_A 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 64 (80)
T ss_dssp EEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSS------SSEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778887765556678888888766666554322 3477888853 44555666643
No 303
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=37.10 E-value=67 Score=19.23 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=35.6
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD-GVEDAERCIKY 131 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~-~~e~A~~Al~~ 131 (238)
.+|.| ++.-..-...|+..+.....| .+.+.... +-+.|++. +.++..++|+.
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~------~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPN------KKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTT------TEEEEEESSCHHHHHHHHHT
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCC------CEEEEEecCCHHHHHHHHHH
Confidence 35677 777665667888888888777 77765542 35667764 55666666663
No 304
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=36.68 E-value=1.2e+02 Score=22.74 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=41.1
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC----CHHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD----GVEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~----~~e~A~~Al~~l 132 (238)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLA------EGTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46788888777677889999999888888877544 347888885 345566677654
No 305
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=36.67 E-value=84 Score=20.19 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=39.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHh
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 132 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~----~e~A~~Al~~l 132 (238)
.+|.|.++....-...|...+.....|..+.+... .+.+.|+|.. .+....+|+.+
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVP------SRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46778888877777889999988877877776543 3467888863 45556666644
No 306
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=36.54 E-value=1.1e+02 Score=21.63 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=29.4
Q ss_pred HHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 026421 84 ERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 137 (238)
Q Consensus 84 ~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~~i 137 (238)
-.+|.++|.+.| .|..+..... ..+..+.|.+++.+.|.++|+. .|..+
T Consensus 86 la~i~~~L~~~~InI~~~~~~~~----~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 86 LAKVLGFLSAEGVFIEYMYSFAN----NNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEcc----CCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 345555665555 3434333211 1256777899999999999885 56554
No 307
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=35.79 E-value=25 Score=24.24 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHhhhcCCceEEEEe-ecCCCCCcceEEEEEeC-CHHHHHHHHHHhCCC
Q 026421 80 TRVTERDLEKHFSKEGKVASCFLV-VEPRTRISRGFAFVTMD-GVEDAERCIKYLNQS 135 (238)
Q Consensus 80 ~~~t~~~L~~~f~~~G~i~~v~i~-~~~~tg~~~g~afV~f~-~~e~A~~Al~~l~g~ 135 (238)
..+.+..|.++..+|+.-.+|..- .+...+..-|.-+|++. +.++.++|++.|...
T Consensus 31 ~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 31 QSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp ECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred CccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 355666788888999854443221 12223445677788886 456677777776543
No 308
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=35.17 E-value=25 Score=31.55 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=28.9
Q ss_pred HHHHHh--hhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 026421 86 DLEKHF--SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 129 (238)
Q Consensus 86 ~L~~~f--~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al 129 (238)
+|..+| ..+|.|+.+.|...+.. .....+++.|.+.++|.+|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p-~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKP-PVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECC-SEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecC-CeEEEEEEEeCCHHHHHHHH
Confidence 355666 36899999888766532 22346788999987776644
No 309
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=34.86 E-value=8.1 Score=27.82 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 026421 113 GFAFVTMDGVEDAERCIKYLNQSVLEGR 140 (238)
Q Consensus 113 g~afV~f~~~e~A~~Al~~l~g~~i~g~ 140 (238)
.++|++|++...|..||+.|++....+.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ----------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCCC
Confidence 3788889999999999998888765543
No 310
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=34.83 E-value=1.3e+02 Score=21.87 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=16.0
Q ss_pred ceEEEEEeCCHHHHHHHHH
Q 026421 112 RGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 112 ~g~afV~f~~~e~A~~Al~ 130 (238)
...++|+|.+.++|.+++.
T Consensus 88 ~~~viieFPS~~aa~a~y~ 106 (143)
T 3hhl_A 88 DHVFIAEYPSVAAFVEMIR 106 (143)
T ss_dssp SEEEEEEESCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHc
Confidence 4589999999999988754
No 311
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=34.75 E-value=23 Score=32.40 Aligned_cols=54 Identities=6% Similarity=0.053 Sum_probs=33.8
Q ss_pred CCCCcHHHHHHHhh----hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 79 STRVTERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 79 p~~~t~~~L~~~f~----~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
+...+..+|..+|. .||.|+.+.|...+... ...++++.|.+.++|.+|+..+.
T Consensus 282 ~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~-~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 282 ARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQ-AVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp -----CCCTHHHHTTCTTSSCEEEEEEEECEECCS-EEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCcchhhhhccCCCCcEEEEEEEEEEEeccc-ceEEEEEEcCCHHHHHHHHHHHH
Confidence 33333445666653 55788888876654322 24577899999999988887553
No 312
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=34.74 E-value=31 Score=27.58 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=24.7
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEEEe
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLV 103 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~ 103 (238)
..+.|.|||..++...|.+++.....+..+.++
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 457899999999999999998765444444333
No 313
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=34.57 E-value=34 Score=27.47 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=22.9
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCceEEE
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKVASCF 101 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~ 101 (238)
..+.|+|||+.++...|.+++.....+..+.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~ 121 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMH 121 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEE
Confidence 3688999999999998888887543344333
No 314
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=33.73 E-value=9.5 Score=30.91 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=24.8
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEe
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLV 103 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~ 103 (238)
...|+|||+.++...|..++.....+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 44799999999999999999876555555444
No 315
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=33.64 E-value=39 Score=23.36 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=24.7
Q ss_pred HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 85 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 85 ~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
+.|+++-++.|. .|.|..+.. ......++| +-+.+.+++|++.++.
T Consensus 31 ~~Ik~I~~~TGa--kI~I~~~~~-~~~er~V~I-~G~~e~v~~A~~~I~~ 76 (106)
T 2hh3_A 31 EMIKKIQNDAGV--RIQFKQDDG-TGPEKIAHI-MGPPDRCEHAARIIND 76 (106)
T ss_dssp HHHHHHHHHHTC--EEEECSSCS-SSSEEEEEE-ESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc--EEEEecCCC-CCceeEEEE-EeCHHHHHHHHHHHHH
Confidence 456666666663 455543321 111123333 4678888888886654
No 316
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=32.86 E-value=74 Score=24.67 Aligned_cols=56 Identities=4% Similarity=-0.010 Sum_probs=37.2
Q ss_pred cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC------eeCCe-EEEEE
Q 026421 83 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS------VLEGR-YITVE 145 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~------~i~g~-~l~V~ 145 (238)
.+++|.+.+..|.++.- ..+.-+-.-||+|.+.++...+|..|.|. .|+|+ .|...
T Consensus 66 ~~~~I~~Ei~aYnpLiP-------~~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~v~l~v~~~~~V~ai 128 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLVP-------DGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYAI 128 (194)
T ss_dssp SHHHHHHHHHHHGGGCC-------CSSEEEEEEEECCSSHHHHHHHHHHTTTGGGSEEEEETTSCCEECE
T ss_pred CHHHHHHHHHHhcccCC-------CCCcEEEEEEEEcCCHHHHHHHHHHhcCccceEEEEECCcceeeee
Confidence 55666666777765421 12222446799999999999999999885 45565 45543
No 317
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=32.57 E-value=66 Score=27.71 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=29.6
Q ss_pred EEEecCCCCC--CcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 72 TLYVTGLSTR--VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 72 ~l~V~nLp~~--~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
.-+|+||..- -....|.++..+||.|..+.+. +.-+|...+++.++.++.
T Consensus 17 ~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 17 WPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp -----------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CCeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 3457777542 2345678888999998877662 245677789999888875
No 318
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=32.53 E-value=55 Score=27.94 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=36.3
Q ss_pred EEEecCCCCC---CcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 72 TLYVTGLSTR---VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 72 ~l~V~nLp~~---~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
.-+|+||..- -....+.++..+||.|..+.+. +.-+|.+.+++.++.++.
T Consensus 18 ~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~ 70 (476)
T 3e6i_A 18 LPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALL 70 (476)
T ss_dssp BTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHH
T ss_pred cccccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHh
Confidence 4457777542 2346678888999999777652 246788889999999887
No 319
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=31.76 E-value=84 Score=18.72 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=23.5
Q ss_pred CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 81 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 81 ~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
-.++++.+.....| .+-.|-.|.+.++|+++|.
T Consensus 17 y~sW~ec~~qV~g~-----------------~ga~yK~F~t~~eA~~~l~ 49 (53)
T 3bsu_A 17 FLTWNECRAQVDRF-----------------PAARFKKFATEDEAWAFVR 49 (53)
T ss_dssp ESSHHHHHHHHTTC-----------------TTCEEEEESSHHHHHHHHH
T ss_pred ECCHHHHHHHhcCC-----------------CCCccCCCCCHHHHHHHHH
Confidence 34667666655443 3456788999999999987
No 320
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=31.53 E-value=37 Score=28.93 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.0
Q ss_pred EEEecCCCCCCcHHHHHHHhhh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSK 93 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~ 93 (238)
.++|+|||..++..-|.++|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888864
No 321
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.39 E-value=86 Score=21.31 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=24.3
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 026421 113 GFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 148 (238)
Q Consensus 113 g~afV~f~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 148 (238)
....|...+.+.|++||... ..++.+.|.|-+.+
T Consensus 52 tivvvvvddkewaekairfv--kslgaqvliiiydq 85 (134)
T 2l69_A 52 TIVVVVVDDKEWAEKAIRFV--KSLGAQVLIIIYDQ 85 (134)
T ss_dssp EEEEEECSSHHHHHHHHHHH--HHHCCCCEEEEECS
T ss_pred eEEEEEEccHHHHHHHHHHH--HhcCCeEEEEEEeC
Confidence 46677889999999999854 24555666666654
No 322
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=31.29 E-value=21 Score=26.43 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=31.1
Q ss_pred CEEEecCCCCCCcH----------HHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCC
Q 026421 71 NTLYVTGLSTRVTE----------RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG 121 (238)
Q Consensus 71 ~~l~V~nLp~~~t~----------~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~ 121 (238)
+..|+-.|.+..-+ .+|.+.+...| |.+..|..+..++ .-|+++++.+
T Consensus 43 R~af~m~Lkp~~~eEYk~~Ha~VWPEv~~~Lk~aG-I~nYSIfl~~~~~--~LF~~~E~~d 100 (144)
T 2qlw_A 43 KHAFKMQLNPGMEAEYRKRHDEIWPELVDLLHQSG-ASDYSIHLDRETN--TLFGVLTRPK 100 (144)
T ss_dssp EEEEEEEBCTTCHHHHHHHHHTCCHHHHHHHHHHT-CEEEEEEEETTTT--EEEEEEEEET
T ss_pred EEEEEEEcCchHHHHHHHHHHhCCHHHHHHHHHcC-CeEEEEEEECCCC--eEEEEEEEcC
Confidence 45666667665433 45677777777 5566666664333 5689999877
No 323
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=30.80 E-value=40 Score=22.52 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=24.9
Q ss_pred CCCCCCCEEEecCCCCCCcHHHHHHHhhhc
Q 026421 65 ETGNPGNTLYVTGLSTRVTERDLEKHFSKE 94 (238)
Q Consensus 65 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~ 94 (238)
...+....|.|.+.+..++.++.++|+..|
T Consensus 14 s~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 14 TTLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp --CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred cccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 455667889999999999999999999888
No 324
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=30.44 E-value=76 Score=24.13 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=28.1
Q ss_pred cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 83 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.-++|++||..|-.++ .| +.+.+..|.+.+.|.+.|+..
T Consensus 131 ~l~~i~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLE---------KG--KWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc---------CC--CcEEEccCcCHHHHHHHHHHH
Confidence 3467889999995443 12 346778899999999888753
No 325
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.97 E-value=16 Score=23.22 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=8.2
Q ss_pred ceEEEEEeCC
Q 026421 112 RGFAFVTMDG 121 (238)
Q Consensus 112 ~g~afV~f~~ 121 (238)
+..|||.|++
T Consensus 37 ~~~ClV~FeD 46 (68)
T 2e5p_A 37 REVCLVQFED 46 (68)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 5689999976
No 326
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=29.93 E-value=79 Score=17.85 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=34.6
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHHh
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD-GVEDAERCIKYL 132 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~-~~e~A~~Al~~l 132 (238)
++.|.++.-..-...|+..+.....|..+.+... .+.+.|++. +.+...++|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~i~~~i~~~ 59 (64)
T 2xmm_A 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDLT------SKKVTITSALGEEQLRTAIASA 59 (64)
T ss_dssp EEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTT------TCEEEEECSSCHHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEec------CCEEEEEecCCHHHHHHHHHHc
Confidence 5667777665556778888888877777776433 235666643 445556666643
No 327
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=29.80 E-value=79 Score=23.08 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=25.5
Q ss_pred ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 026421 97 VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 135 (238)
Q Consensus 97 i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g~ 135 (238)
|..|.++.. ..||.||++...+++..+|..+.|.
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 556655432 4789999999988888888877664
No 328
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.63 E-value=40 Score=23.93 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=23.3
Q ss_pred CCCCEEEecCCCCCCcHHHHHHHhhhcCCc
Q 026421 68 NPGNTLYVTGLSTRVTERDLEKHFSKEGKV 97 (238)
Q Consensus 68 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i 97 (238)
-.+.+|+|.++. ..+.++|++++..+|-.
T Consensus 23 f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~ 51 (129)
T 2d8m_A 23 LQGVVVVLSGFQ-NPFRSELRDKALELGAK 51 (129)
T ss_dssp STTEEEEEESCC-TTHHHHHHHHHHHTTEE
T ss_pred CCCeEEEEeCCC-cHHHHHHHHHHHHcCCE
Confidence 457788898886 56788999999999854
No 329
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=29.52 E-value=1.2e+02 Score=19.93 Aligned_cols=26 Identities=15% Similarity=0.025 Sum_probs=13.6
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEE
Q 026421 77 GLSTRVTERDLEKHFSKEGKVASCFL 102 (238)
Q Consensus 77 nLp~~~t~~~L~~~f~~~G~i~~v~i 102 (238)
+.+..--...|.+++.+.+......+
T Consensus 10 ~~~~kd~Ks~LqE~~q~~~~~p~Y~~ 35 (90)
T 3llh_A 10 ANPGKTPISLLQEYGTRIGKTPVYDL 35 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTCCCEEEE
T ss_pred cccCCCHHHHHHHHHHhcCCCCEEEE
Confidence 33334456678888877664433333
No 330
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=29.37 E-value=1.7e+02 Score=23.27 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=42.0
Q ss_pred CCEEEecCCCCCCc--HHHHHHHhhh-----cCC--------ceEEEEeec---CCCCCcceEEEEEeCCHHHHHHHHHH
Q 026421 70 GNTLYVTGLSTRVT--ERDLEKHFSK-----EGK--------VASCFLVVE---PRTRISRGFAFVTMDGVEDAERCIKY 131 (238)
Q Consensus 70 ~~~l~V~nLp~~~t--~~~L~~~f~~-----~G~--------i~~v~i~~~---~~tg~~~g~afV~f~~~e~A~~Al~~ 131 (238)
-+.|.|-+||.... +..+..+|.. |.. |..+.=... .....++ ..+|.|....+-++.|.+
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR-~IIvK~~~~~~KErILka 130 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPR-HIIVRFTKVEMKEKMLRA 130 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCC-CEEEEESSHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCC-eEEEEecccccHHHHHHH
Confidence 46899999999765 4434444432 322 222221111 1111223 567788776665554443
Q ss_pred ---hCCCeeCCeEEEEEec
Q 026421 132 ---LNQSVLEGRYITVERS 147 (238)
Q Consensus 132 ---l~g~~i~g~~l~V~~a 147 (238)
.....+.|.+|.+...
T Consensus 131 aR~k~~vtykG~pIrlsaD 149 (233)
T 2yko_A 131 AREKGRVTLKGKPIRLTVD 149 (233)
T ss_dssp HHTTSCEEETTEEEEEEEC
T ss_pred HHHhcccccCCCceEEeCC
Confidence 3566789999887654
No 331
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=29.25 E-value=34 Score=29.32 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=32.1
Q ss_pred EecCCCC---CCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 74 YVTGLST---RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 74 ~V~nLp~---~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
+|+||.. .-....+.++..+||+|..+.+.. .-+|...+++.++.++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW---------TPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT---------EEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC---------eeEEEECCHHHHHHHHH
Confidence 5777654 233456778889999998877631 23455667888777765
No 332
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=29.18 E-value=93 Score=20.81 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=36.5
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcCCceEEEEe-ecCCCCCcceEEEEEeCC-HHHHHHHHHHhC
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLV-VEPRTRISRGFAFVTMDG-VEDAERCIKYLN 133 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~-~~~~tg~~~g~afV~f~~-~e~A~~Al~~l~ 133 (238)
.|.|.-....+.+..|.++..+|+.-.+|..- .+...+..-|+-+|++.- .++.++|++.|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLR 88 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHH
Confidence 44444334466677788888888854443221 122234446777888763 556777777664
No 333
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.80 E-value=75 Score=21.22 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=20.4
Q ss_pred CceEEEEeecCCCCCcceEEEEEeCC
Q 026421 96 KVASCFLVVEPRTRISRGFAFVTMDG 121 (238)
Q Consensus 96 ~i~~v~i~~~~~tg~~~g~afV~f~~ 121 (238)
+|++|.|..-...++-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57778777666667889999999975
No 334
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=28.71 E-value=1.5e+02 Score=20.62 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=32.2
Q ss_pred EEEecCCCCCCcHHHHH-------HHhhh----cCCceEEEEeecCCCCCcceEE-EEEeCCHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLE-------KHFSK----EGKVASCFLVVEPRTRISRGFA-FVTMDGVEDAER 127 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~-------~~f~~----~G~i~~v~i~~~~~tg~~~g~a-fV~f~~~e~A~~ 127 (238)
.|.+..|...++++++. +.|.. .-.|..+.+-.+......-.+| +++|++.++.++
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~~~~yd~~l~~~F~s~e~l~~ 90 (118)
T 3fmb_A 23 HIVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNPGETWNIALYSEFDNLDDVKF 90 (118)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCTTCCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCCCCCceEEEEEEECCHHHHHH
Confidence 45556787888776532 33432 3356677776654322223344 568999887654
No 335
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=28.49 E-value=84 Score=23.08 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=35.8
Q ss_pred EEecCCCCCCcHHHHHHHhhhc-C-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 73 LYVTGLSTRVTERDLEKHFSKE-G-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~-G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
.||.-+....+..+|++.++++ + .|..|..+.-+. + .--|||.+..-.+|.....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHHHH
Confidence 3444567788999999888764 4 566665554432 1 3359999987666655443
No 336
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=28.00 E-value=99 Score=27.79 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=33.4
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhc---CCceEEEEeecCCCCCcceEEE-EEeCCHHHHHHHHHHhCC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKE---GKVASCFLVVEPRTRISRGFAF-VTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~---G~i~~v~i~~~~~tg~~~g~af-V~f~~~e~A~~Al~~l~g 134 (238)
.++|.|.-||..++.+.|.+.+... ++|..|.=+.|..+. .|+-| |+++....++..++.|-.
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~--~gvrivIelk~~~~~e~vl~~L~k 341 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDR--TGLRIAIELKKDVNSESIKNYLYK 341 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBT--TBCCEEEEC------CHHHHHHTT
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCC--CceEEEEEECCCcCHHHHHHHHHH
Confidence 3689999999999998877655433 454444434443222 23444 466665566666665544
No 337
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.94 E-value=29 Score=26.35 Aligned_cols=56 Identities=16% Similarity=0.010 Sum_probs=29.1
Q ss_pred EEEecCCCCCCcHHHHHHHhhhc--------CCceEEEEeecC-----CCCCc----------ceEEEEEeCCHHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKE--------GKVASCFLVVEP-----RTRIS----------RGFAFVTMDGVEDAERC 128 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~--------G~i~~v~i~~~~-----~tg~~----------~g~afV~f~~~e~A~~A 128 (238)
++|| |.++++++++.+++.+| |.|..+...-.. ..... -.|.++.|....++.+.
T Consensus 67 ~m~I--lrPdl~eeev~alver~~~iI~~~GG~I~~ve~WG~RrLAY~IkK~~kgg~~~~h~eG~Yvlm~F~a~p~~I~E 144 (168)
T 3bbn_F 67 TMAV--LRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISP 144 (168)
T ss_dssp EEEE--ECTTSCHHHHHSTTHHHHHHHTTTSCEEEEEEEEEECCCSSCTTSCSSSCSSCCCCCCEEEEEEEEECTTSSHH
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEecccccccceeccCcccccccccceEEEEEEEEEeCHHHHHH
Confidence 3445 45677777776555444 466666543111 11111 25788889654444333
Q ss_pred H
Q 026421 129 I 129 (238)
Q Consensus 129 l 129 (238)
|
T Consensus 145 L 145 (168)
T 3bbn_F 145 L 145 (168)
T ss_dssp H
T ss_pred H
Confidence 3
No 338
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=27.67 E-value=84 Score=22.69 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=29.1
Q ss_pred ecCCCCCCcHHHHHHHhh-hcC--CceEEEEeecC----------CCCCcceEEEEEeCC
Q 026421 75 VTGLSTRVTERDLEKHFS-KEG--KVASCFLVVEP----------RTRISRGFAFVTMDG 121 (238)
Q Consensus 75 V~nLp~~~t~~~L~~~f~-~~G--~i~~v~i~~~~----------~tg~~~g~afV~f~~ 121 (238)
|-.+...++++++.+++. .+. .|..|.|-... ......+|.||.|++
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 566777899999999995 343 45555432211 112235788888875
No 339
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=27.62 E-value=85 Score=24.74 Aligned_cols=46 Identities=7% Similarity=0.093 Sum_probs=31.3
Q ss_pred CCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 80 TRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 80 ~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
..+|+++|+.+|...-.--. .. ....+..|.|.+.+.|+.+++.|.
T Consensus 89 ~~vtd~ei~~~Y~~~~~~f~--~~------~~~~~~~I~~~~~~~A~~~~~~l~ 134 (252)
T 3rfw_A 89 IKIDAAKVKAFYDQNKDKYV--KP------ARVQAKHILVATEKEAKDIINELK 134 (252)
T ss_dssp CCCCHHHHHHHHHHHGGGSE--EC------CEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhHHhcc--cc------ceEEEEEEEeCCHHHHHHHHHHHH
Confidence 36899999999976421100 00 012367788889999999998887
No 340
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=26.88 E-value=12 Score=24.34 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=38.1
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHHHhCCCeeCC
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFV-TMDGVEDAERCIKYLNQSVLEG 139 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV-~f~~~e~A~~Al~~l~g~~i~g 139 (238)
...|.|+-+......+.|..-+...|.-..|. .. +. .--.+| -|.+.++|++++..|...-|.+
T Consensus 9 ~~~vQvGaF~~~~~A~~l~~~L~~~G~~a~i~--~~---~~-~yRV~vGpf~s~~~A~~~~~~L~~~g~~~ 73 (81)
T 1uta_A 9 RWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT--TN---NG-WNRVVIGPVKGKENADSTLNRLKMAGHTN 73 (81)
T ss_dssp BCCCBCCEESCHHHHHHHHHHHHHHTCCEEEE--EC---SS-SEEEEESSCBTTTHHHHHHHHHHHHCCSC
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEE--eC---Cc-EEEEEECCcCCHHHHHHHHHHHHHcCCCc
Confidence 45677777766666677777777767543332 11 11 111333 6788899999888776543433
No 341
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=26.69 E-value=87 Score=23.21 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=35.7
Q ss_pred EEecCCCCCCcHHHHHHHhhhc-C-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 73 LYVTGLSTRVTERDLEKHFSKE-G-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~-G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
.||.-+....+..+|++.++.+ + .|..|..+..+. + .--|||.+..-.+|.....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g--~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-G--NKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--CEEEEEEECSSSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--cEEEEEEcCCCCcHHHHHH
Confidence 3444567788999999888764 4 566665554432 2 3359999987666655443
No 342
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=26.07 E-value=1.4e+02 Score=26.70 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=34.0
Q ss_pred HHHHHHHhh----hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 84 ERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 84 ~~~L~~~f~----~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
..||..+|. .+|.|+.+.|...+... ...++.+.|.+.++|.+|+..|-
T Consensus 211 ~~dL~~~~~Gs~GtlGiIt~~tl~l~p~p~-~~~~~~~~f~~~~~~~~~~~~l~ 263 (524)
T 2exr_A 211 NSELFFSVLGGLGQFGIITRARVLLQPAPD-MVRWIRVVYTEFDEFTQDAEWLV 263 (524)
T ss_dssp SHHHHHHHTTCTTSSEEEEEEEEEEEECCS-EEEEEEEEESCHHHHHHHHHHHH
T ss_pred ChhHHhHhhcCCCccEEEEEEEEEEEEcCC-eeEEEEEEeCCHHHHHHHHHHHH
Confidence 457777763 46778887776654322 24467789999999888887653
No 343
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=25.89 E-value=1e+02 Score=23.40 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=27.5
Q ss_pred cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 83 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.-++|++||..|-.+. .| +.+.+..|.+.+.|.+.|+..
T Consensus 127 ~l~~i~~fF~~YK~le---------~g--K~v~~~gw~~~~~A~~~I~~~ 165 (173)
T 1qez_A 127 TKNKIVHFFEHYKELE---------PG--KYVKISGWGSATEAKNRIQLA 165 (173)
T ss_dssp HHHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc---------CC--CceEEccccCHHHHHHHHHHH
Confidence 3467888999995442 12 346677889999999888754
No 344
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.59 E-value=94 Score=23.21 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=35.4
Q ss_pred EEecCCCCCCcHHHHHHHhhhc-C-CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 73 LYVTGLSTRVTERDLEKHFSKE-G-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~-G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
.|+..+...++..+|++.++.+ + .|..|..+.-.. + .--|||++..-.+|.....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-~--~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD-G--EKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS-S--CEEEEEEECTTSCHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC-C--ceEEEEEECCCCcHHHHHH
Confidence 3455567889999999888754 5 566665554332 1 3359999987665544433
No 345
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=25.20 E-value=68 Score=24.39 Aligned_cols=41 Identities=5% Similarity=0.090 Sum_probs=27.5
Q ss_pred cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 83 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.-++|++||..|-.+. .. ..+.+.+..|.+.+.|.+.|+..
T Consensus 128 ~l~~i~~fF~~YK~le-------~k--~gK~v~~~gw~~~~~A~~~I~~~ 168 (174)
T 2prd_A 128 VKQEIQHFFETYKALE-------AK--KGKWVKVTGWRDRKAALEEVRAC 168 (174)
T ss_dssp HHHHHHHHHHHTTGGG-------GG--GTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-------cc--CCCceEECcccCHHHHHHHHHHH
Confidence 3467888999995442 00 01446777899999999888743
No 346
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=24.72 E-value=1.1e+02 Score=22.85 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=27.7
Q ss_pred CcHHHHHHHhhhcCCc---eEEEEeecCCCCCcceEEEEE
Q 026421 82 VTERDLEKHFSKEGKV---ASCFLVVEPRTRISRGFAFVT 118 (238)
Q Consensus 82 ~t~~~L~~~f~~~G~i---~~v~i~~~~~tg~~~g~afV~ 118 (238)
.++++|.++-.+.|++ +.+.|..+..+|..+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 6899999999999976 345666664478878777753
No 347
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=24.67 E-value=2.1e+02 Score=23.31 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=36.6
Q ss_pred CCEEEecCCCC-CCcHHHHHHHhhhc-------CCceEEEEeecCCCCCcceEEEE
Q 026421 70 GNTLYVTGLST-RVTERDLEKHFSKE-------GKVASCFLVVEPRTRISRGFAFV 117 (238)
Q Consensus 70 ~~~l~V~nLp~-~~t~~~L~~~f~~~-------G~i~~v~i~~~~~tg~~~g~afV 117 (238)
++.|-|..+.. .+++++|...+.+| .++-.+.+....++|.+--|.|+
T Consensus 166 TTIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~ 221 (270)
T 4a8j_B 166 TTIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFI 221 (270)
T ss_dssp SEEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEE
T ss_pred hheEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEE
Confidence 35566777776 67899999999988 35666777777788888778775
No 348
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=24.64 E-value=1.9e+02 Score=20.52 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=39.4
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HhC
Q 026421 77 GLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK-YLN 133 (238)
Q Consensus 77 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~-~l~ 133 (238)
.++.....+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....+. .+.
T Consensus 75 ~~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 75 ILKSAKDYPSALAKLESLDEVTEAYYT----TGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp EESSGGGHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred EECCCCCHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 444433467888899999999999887 34445578899999999998884 443
No 349
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.42 E-value=2.1e+02 Score=21.03 Aligned_cols=52 Identities=4% Similarity=0.070 Sum_probs=38.9
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026421 77 GLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 133 (238)
Q Consensus 77 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~ 133 (238)
.++. ...+++.+.+..+-+|..|..+. |...-++.|.+.+.++.+..++.|.
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~vt----G~~d~l~~v~~~d~~~l~~~l~~l~ 145 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYETT----GDYDMVVKIRTKNSEELNNFLDLIG 145 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEECS----SSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEee----CCCCEEEEEEECCHHHHHHHHHHHh
Confidence 4553 34577888899999999998763 4445578899999999888876553
No 350
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=24.30 E-value=27 Score=31.62 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=28.4
Q ss_pred HHHHhh--hcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 87 LEKHFS--KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 87 L~~~f~--~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
|..+|. .+|.|+.+.|...+... ....+++.|.+.++|.+|+.
T Consensus 250 l~~L~~~GtlGiIt~~tl~l~p~p~-~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 250 IDGLFSQSNMGIVTKIGIWLMPNPG-GYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp CGGGGSSSSSEEEEEEEEECEECCS-CEEEEEEEECSTTHHHHHHH
T ss_pred hhcccccCcEEEEEEEEEEEEeCCC-ceEEEEEEcCCHHHHHHHHH
Confidence 344553 47888888876654322 24578889999888766654
No 351
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=24.17 E-value=29 Score=22.41 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.9
Q ss_pred cHHHHHHHhhhcCCceEE
Q 026421 83 TERDLEKHFSKEGKVASC 100 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v 100 (238)
|--||++++.+||.|+.+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 567899999999987654
No 352
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=24.14 E-value=64 Score=27.65 Aligned_cols=49 Identities=8% Similarity=-0.043 Sum_probs=33.7
Q ss_pred EEecCCCCCC--cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 73 LYVTGLSTRV--TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 73 l~V~nLp~~~--t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
-+|+||..-. ....+.++..+||.|..+.+. +.-+|...+++.++.++.
T Consensus 23 PliGn~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 73 (485)
T 3nxu_A 23 PFLGNILSYHKGFCMFDMECHKKYGKVWGFYDG---------QQPVLAITDPDMIKTVLV 73 (485)
T ss_dssp TTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECCHHHHHHHHT
T ss_pred CeecCcHHhhcChHHHHHHHHHHcCCeEEEEeC---------CCCEEEECCHHHHHHHHh
Confidence 3467775422 234567788999998877652 245677889999988876
No 353
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=23.79 E-value=1e+02 Score=21.18 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=19.9
Q ss_pred CceEEEEeecCCCCCcceEEEEEeCC
Q 026421 96 KVASCFLVVEPRTRISRGFAFVTMDG 121 (238)
Q Consensus 96 ~i~~v~i~~~~~tg~~~g~afV~f~~ 121 (238)
+|++|.|..-...++-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 56777776665567888999999975
No 354
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=23.71 E-value=1.3e+02 Score=25.74 Aligned_cols=38 Identities=21% Similarity=0.094 Sum_probs=29.3
Q ss_pred HHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 026421 84 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 84 ~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
...|.++..+||+|..+.+. +.-+|.+.+++.++.++.
T Consensus 35 ~~~~~~l~~kYG~i~~~~~g---------~~~~vvv~dp~~~~~il~ 72 (487)
T 3n9y_A 35 HLHHVQNFQKYGPIYREKLG---------NVESVYVIDPEDVALLFK 72 (487)
T ss_dssp HHHHHHHHHHHCSEEEEEET---------TEEEEEECCHHHHHHHHH
T ss_pred hHHHHHHHHHcCceeeccCC---------CCCEEEEcCHHHHHHHHH
Confidence 35577888999999887763 234688889999998876
No 355
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=23.54 E-value=24 Score=23.02 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=8.1
Q ss_pred ceEEEEEeCC
Q 026421 112 RGFAFVTMDG 121 (238)
Q Consensus 112 ~g~afV~f~~ 121 (238)
+..|||.|++
T Consensus 54 ~e~ClV~F~D 63 (79)
T 2m0o_A 54 REVCLVQFED 63 (79)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEEEcC
Confidence 4589999976
No 356
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.40 E-value=83 Score=20.87 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=34.8
Q ss_pred EEecCCCCCCcHHHHHHHhhh-cC-CceEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 026421 73 LYVTGLSTRVTERDLEKHFSK-EG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAER 127 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~ 127 (238)
.|+..++..++..+|++.+++ |+ .|..|..+..+. ...-|||++..-++|..
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~---~~KKA~VtL~~g~~aid 77 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD---GEKKAVVRLSEDDDAQE 77 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SSEEEEEEECTTSCHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC---CceEEEEEECCCCcHHH
Confidence 345567789999999998876 45 566666554431 13469999977665433
No 357
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=23.27 E-value=63 Score=21.01 Aligned_cols=49 Identities=18% Similarity=0.070 Sum_probs=30.6
Q ss_pred CCCCCCcHHHHHHHh-hhcCC--------ceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 77 GLSTRVTERDLEKHF-SKEGK--------VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 77 nLp~~~t~~~L~~~f-~~~G~--------i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
-+|.+++-.+|.+.. .+|+. ...+++.- +.| -||++.+-++.+.|++.+
T Consensus 7 ~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD--EdG-----D~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 7 LVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD--EDG-----DFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp ECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE--TTT-----EEEECCSTTHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc--CCC-----CEEEEcCHHHHHHHHHHH
Confidence 367777777665432 44442 23333332 233 799999999999999865
No 358
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.12 E-value=1.1e+02 Score=21.25 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=18.5
Q ss_pred CceEEEEeecCCCCCcceEEEEEeCC
Q 026421 96 KVASCFLVVEPRTRISRGFAFVTMDG 121 (238)
Q Consensus 96 ~i~~v~i~~~~~tg~~~g~afV~f~~ 121 (238)
+|++|.|..-...++-++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46667666555567778888888864
No 359
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=22.89 E-value=2.3e+02 Score=22.84 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=15.2
Q ss_pred EEEEeCCHHHHHHHHHHhCC
Q 026421 115 AFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 115 afV~f~~~e~A~~Al~~l~g 134 (238)
.+..|-+.++|+++|+.|..
T Consensus 44 V~~~F~s~~dA~~~L~~lk~ 63 (252)
T 4ev1_A 44 ITGAYMSRQEAQAFINELRN 63 (252)
T ss_dssp EEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEecHHHHHHHHHHHHh
Confidence 45556689999999987755
No 360
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=22.35 E-value=1.7e+02 Score=20.58 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=14.9
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcC
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEG 95 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G 95 (238)
..|||+++|.. .++.+++...|
T Consensus 7 ~~l~~g~~~~~---~~~~~ll~~~g 28 (157)
T 3rgo_A 7 HTVLLGALPLK---NMTRRLVLDEN 28 (157)
T ss_dssp SSEEEESCCCG---GGHHHHHHHSC
T ss_pred CCeEEecCcCc---cchHHHHHHcC
Confidence 36999998865 34555566666
No 361
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=22.34 E-value=1.6e+02 Score=18.73 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=23.8
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeec
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVE 105 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~ 105 (238)
.|.|......-.-.+|..+|...| .|..+.....
T Consensus 7 ~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~ 41 (91)
T 1zpv_A 7 IITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL 41 (91)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEE
Confidence 455665555556688888888886 6777766554
No 362
>3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A*
Probab=22.04 E-value=1.9e+02 Score=19.45 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=33.5
Q ss_pred EEecCCCCCCcHHHHHHHhhhc-------CCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026421 73 LYVTGLSTRVTERDLEKHFSKE-------GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 134 (238)
Q Consensus 73 l~V~nLp~~~t~~~L~~~f~~~-------G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l~g 134 (238)
+|| ++..+.++++..++..-+ .......++.+. -+++.|.+-..|-.|.+.|-.
T Consensus 14 mFV-~v~~~~t~~e~d~lt~lWqtsL~Nnhi~~~ry~Id~d-------r~ifmf~DGs~a~e~kdfL~~ 74 (90)
T 3off_A 14 TFV-SVTGNPTREESDTITKLWQTSLWNNHIQAERYMVDDN-------RAIFLFKDGTQAWDAKDFLIE 74 (90)
T ss_dssp EEE-EESSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEETT-------EEEEEESSGGGHHHHHHHHTT
T ss_pred EEE-EecCCCCHHHHHHHHHHHHHHHHhCCeeEEEEEecCC-------EEEEEEcChHHHHHHHHHHhc
Confidence 344 455566776665554322 333444455442 688999999999888887643
No 363
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=21.89 E-value=1.4e+02 Score=17.86 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=34.9
Q ss_pred EEEecCCCCCCcHHHHHHHhhhcC-CceEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHH
Q 026421 72 TLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMD-GVEDAERCIKY 131 (238)
Q Consensus 72 ~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~-~~e~A~~Al~~ 131 (238)
++.|. +.-..-...|+..+.+.. .|..+.+... .+.+.|++. +.++..++|+.
T Consensus 8 ~~~v~-m~C~~C~~~ie~~l~~~~~GV~~~~v~~~------~~~~~v~~~~~~~~i~~~i~~ 62 (73)
T 1cc8_A 8 QFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDISLE------KQLVDVYTTLPYDFILEKIKK 62 (73)
T ss_dssp EEEEC-CCSHHHHHHHHHHHHTTTTSEEEEEEETT------TTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEe-eECHHHHHHHHHHHHhCCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHH
Confidence 45565 555444577899999887 7888877544 235667664 45666667663
No 364
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis}
Probab=21.78 E-value=2.9e+02 Score=21.62 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=20.0
Q ss_pred CCCEEEecCCCC-CCcHHHHHHHhhhcC
Q 026421 69 PGNTLYVTGLST-RVTERDLEKHFSKEG 95 (238)
Q Consensus 69 ~~~~l~V~nLp~-~~t~~~L~~~f~~~G 95 (238)
...+|||-++.- ...+..|.+.|.+.|
T Consensus 6 ~~pvvliHG~~~~~~~~~~l~~~L~~~g 33 (249)
T 3fle_A 6 TTATLFLHGYGGSERSETFMVKQALNKN 33 (249)
T ss_dssp CEEEEEECCTTCCGGGTHHHHHHHHTTT
T ss_pred CCcEEEECCCCCChhHHHHHHHHHHHcC
Confidence 346899988866 345677888888877
No 365
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=21.40 E-value=1e+02 Score=27.34 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=35.0
Q ss_pred CCEEEecCCCCCCcHHHHHHHhhhc---CCceEEEEeecCCCCCcceEE-EEEeCCHHHHHHHHHH
Q 026421 70 GNTLYVTGLSTRVTERDLEKHFSKE---GKVASCFLVVEPRTRISRGFA-FVTMDGVEDAERCIKY 131 (238)
Q Consensus 70 ~~~l~V~nLp~~~t~~~L~~~f~~~---G~i~~v~i~~~~~tg~~~g~a-fV~f~~~e~A~~Al~~ 131 (238)
.++|.|.-||..++.+.|.+.+... ++|..|.=+.|..+.. .++- .|+++....++..++.
T Consensus 236 ~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~-~gvrivI~lk~~~~~~~~l~~ 300 (470)
T 3ilw_A 236 RTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR-VGLRIVIEIKRDAVAKVVINN 300 (470)
T ss_dssp CEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTT-TBCCEEEEECTTSCHHHHHHH
T ss_pred CCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCC-CceEEEEEECCCCCHHHHHHH
Confidence 4579999999999988877665443 4444444444431221 2343 3566554444444443
No 366
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=21.14 E-value=1.2e+02 Score=20.79 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=31.4
Q ss_pred CCCCCCcHHHHHHHh-hhcC--------CceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 77 GLSTRVTERDLEKHF-SKEG--------KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 77 nLp~~~t~~~L~~~f-~~~G--------~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
-+|..++-++|.+.. .+++ .+..+++. .+.| -||++.+-++.+.|++.+
T Consensus 28 ~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk--DEdG-----D~Vtl~sddDl~~A~e~~ 85 (98)
T 1q1o_A 28 LVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DEDG-----DFVVLGSDEDWNVAKEML 85 (98)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE--CSSS-----CEEEECSHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE--cCCC-----CEEEEcCHHHHHHHHHHH
Confidence 367888887775433 3332 12334433 2333 699999999999999966
No 367
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=21.00 E-value=1.3e+02 Score=20.05 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=36.9
Q ss_pred cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HhCCCeeCCeEEEEEecc
Q 026421 83 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK-YLNQSVLEGRYITVERSR 148 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~-~l~g~~i~g~~l~V~~a~ 148 (238)
...+|.++|.+||.+....|-.... .+..+.-.|.+.-.++.-.||. +|. .|.|-+++..+++
T Consensus 20 ~a~kvn~iL~~yg~~I~gRmGiP~~-~~~~~iIsl~v~~~~d~I~aL~gkLg--~i~GV~vKt~~~~ 83 (86)
T 2nzc_A 20 AYRQVNELLHNFSEDILLRVGYPVR-EENMAIIFLVLKTDNDTIGALSGKLG--QISGVRVKTVPLK 83 (86)
T ss_dssp HHHHHHHHHHHTGGGEEEEEEEEEG-GGTEEEEEEEEEECHHHHHHHHHHHH--TSTTEEEEEEECC
T ss_pred hHHHHHHHHHhccCEEEEEcCCCcC-cCCceEEEEEEECCHHHHHHHHHHhC--CCCCEEEEEEEee
Confidence 3447999999999887766543321 1224455556654444445544 332 5667766666553
No 368
>4dqz_A Methyltransferase type 12; ligase-activating, bacterial PNKP; 2.30A {Clostridium thermocellum} PDB: 4drf_B 4e6n_B*
Probab=20.79 E-value=57 Score=25.76 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=32.5
Q ss_pred CEEEecCCCCCCcHHHHHHHhhhcCCc-eEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHH
Q 026421 71 NTLYVTGLSTRVTERDLEKHFSKEGKV-ASCFLVVEP---RTRISRGFAFVTMDGVEDAERCIK 130 (238)
Q Consensus 71 ~~l~V~nLp~~~t~~~L~~~f~~~G~i-~~v~i~~~~---~tg~~~g~afV~f~~~e~A~~Al~ 130 (238)
-+|.|.-||..-.++-++.+|+..|-- ....+..+. +.|.+. |.-|+..-..-...||.
T Consensus 118 L~~~~p~lp~rgg~~l~~rLFePLGw~V~a~~~~ld~~fp~WG~Sr-y~~l~L~g~~rladaL~ 180 (230)
T 4dqz_A 118 LKAKIMMLPCKGGEEIIYRLFEPLGYKVDVEGYMLDEKFPEWGKSR-YYTVSLEGEVRVRDLLN 180 (230)
T ss_dssp EEEEEEEEECTTHHHHHHHHHGGGTCEEEEEEC------------C-EEEEEEEEEECHHHHHH
T ss_pred eEEEeeeeecCCcHHHHHHhhccccceEeeeecccCccCcccCCcc-ceEEEEeeeEEHHHHhh
Confidence 467788888888888999999999943 333344443 224333 55555544333334443
No 369
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=20.53 E-value=2.7e+02 Score=20.80 Aligned_cols=36 Identities=11% Similarity=-0.107 Sum_probs=26.2
Q ss_pred CCCCCEEEecCCCCCCcHHHHHHHhhhcCCceEEEE
Q 026421 67 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFL 102 (238)
Q Consensus 67 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i 102 (238)
.+..+.|.|+.-.+--|.+||.+.+..-.+-..+-|
T Consensus 23 ~Pe~~NvIlGqsHFIKTVEDl~Ealv~svP~ikFGi 58 (173)
T 1rlh_A 23 IPAEANIIVGYSHFIKTVEDLNEIIRTHVPGSKYGI 58 (173)
T ss_dssp CCTTCEEEEEEESSCCCTHHHHHHTGGGSTTSEEEE
T ss_pred CCCCceEEEeeccccccHHHHHHHHhhcCCCCeEEE
Confidence 456788999988888899999998876554333333
No 370
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=20.12 E-value=98 Score=23.48 Aligned_cols=39 Identities=8% Similarity=0.004 Sum_probs=25.9
Q ss_pred cHHHHHHHhhhcCCceEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026421 83 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 132 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~e~A~~Al~~l 132 (238)
.-++|+.||..|-.++ .| +..-...|.+.+.|.+.|+..
T Consensus 125 ~l~~I~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~~ 163 (172)
T 1sxv_A 125 ELDAIKHFFVHYKDLE---------PG--KFVKAADWVDRAEAEAEVQRS 163 (172)
T ss_dssp HHHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcC---------CC--CeEEeCCCCCHHHHHHHHHHH
Confidence 4477889999995442 12 223345688999998887643
No 371
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.11 E-value=67 Score=17.67 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHhhhc
Q 026421 80 TRVTERDLEKHFSKE 94 (238)
Q Consensus 80 ~~~t~~~L~~~f~~~ 94 (238)
..++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 478999999999875
No 372
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=20.04 E-value=2.1e+02 Score=19.18 Aligned_cols=20 Identities=15% Similarity=-0.042 Sum_probs=11.0
Q ss_pred cHHHHHHHhhhcCCceEEEE
Q 026421 83 TERDLEKHFSKEGKVASCFL 102 (238)
Q Consensus 83 t~~~L~~~f~~~G~i~~v~i 102 (238)
-...|.+++.+.+......+
T Consensus 16 ~Kt~LqE~~Q~~~~~p~Y~~ 35 (97)
T 1x49_A 16 YMDKLNKYRQMHGVAITYKE 35 (97)
T ss_dssp HHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHcCCCCeEEE
Confidence 34567777776654333333
Done!