BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026422
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GN3|A Chain A, Crystal Structure Of A Putative Protein-Disulfide
Isomerase From Pseudomonas Syringae To 2.5a Resolution.
pdb|3GN3|B Chain B, Crystal Structure Of A Putative Protein-Disulfide
Isomerase From Pseudomonas Syringae To 2.5a Resolution
Length = 182
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 130 EKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRG 189
E P + T ++ I +++ AL F++ + + K++ G
Sbjct: 100 EHHAGGPNLDATPNDIIARIERYSG--------LALAEAFANPELEHAVKWHTKYARQNG 151
Query: 190 VYATPTFFVNGFSLAGAGSPLDYNGW 215
++ +PTF +NG G S + W
Sbjct: 152 IHVSPTFMINGLVQPGMSSGDPVSKW 177
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 128 QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 171
++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 39 EEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 82
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 128 QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 171
++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 45 EEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 88
>pdb|2YGS|A Chain A, Card Domain From Apaf-1
Length = 92
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 128 QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 171
++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 39 EEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 82
>pdb|3YGS|C Chain C, Apaf-1 Card In Complex With Prodomain Of Procaspase-9
Length = 95
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 128 QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 171
++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 39 EEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 82
>pdb|2P1H|A Chain A, Rapid Folding And Unfolding Of Apaf-1 Card
Length = 94
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 128 QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 171
++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 41 EEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84
>pdb|1CY5|A Chain A, Crystal Structure Of The Apaf-1 Card
pdb|1C15|A Chain A, Solution Structure Of Apaf-1 Card
Length = 97
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 128 QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 171
++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 39 EEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 82
>pdb|1CWW|A Chain A, Solution Structure Of The Caspase Recruitment Domain
(Card) From Apaf-1
Length = 102
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 128 QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 171
++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 44 EEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,480,670
Number of Sequences: 62578
Number of extensions: 235940
Number of successful extensions: 402
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 9
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)