BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026422
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P58069|RASA2_MOUSE Ras GTPase-activating protein 2 OS=Mus musculus GN=Rasa2 PE=1 SV=1
Length = 848
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 47 HPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRA 106
PV + A I +C D +DA PL + L H+ V + + L D A +
Sbjct: 340 QPVSASAAYI---LGEICQDQKDAVLPLVRLLLHHNKLVPFITAVAELDLKDTPDANA-- 394
Query: 107 LHIVNRTNSSATFCLLEWF 125
+ R NS AT CL E
Sbjct: 395 ---IFRGNSLATQCLTEMM 410
>sp|Q63713|RASA2_RAT Ras GTPase-activating protein 2 OS=Rattus norvegicus GN=Rasa2 PE=2
SV=1
Length = 847
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 47 HPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRA 106
PV + A I +C D +DA PL + L H+ V + + L D A +
Sbjct: 339 QPVSASAAYI---LGEICRDQKDAVLPLVRLLLHHNKLVPFITAVADLDLKDTQDANA-- 393
Query: 107 LHIVNRTNSSATFCLLEWF 125
+ R NS AT CL E
Sbjct: 394 ---IFRGNSLATQCLTEMM 409
>sp|P0C6D1|IRGB_VIBCH Iron-regulated virulence regulatory protein IrgB OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=irgB PE=3 SV=1
Length = 298
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 159 NSYS-SALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLD-YNGWR 216
SYS ALES +D L + + RG+ PT+F NGF A GS + NGW+
Sbjct: 207 GSYSLPALESRLQ---SDNLAMQADAIAKGRGIGLLPTWFANGFETAHPGSLIPCVNGWQ 263
>sp|A5IYF2|LON_MYCAP Lon protease OS=Mycoplasma agalactiae (strain PG2) GN=lon PE=3 SV=1
Length = 996
Score = 32.0 bits (71), Expect = 3.9, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 110 VNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGF 169
++ +S+ T C +E EK Y+ +Q A +K I K+ + I E
Sbjct: 82 ISNLDSNMTLCQVE----SVEKVYDNGSQKWHYIATLKAIHKYILQDIYGD-----EETI 132
Query: 170 SDRSTDLLTRVSFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK 226
S S D+ ++ K+ G+ AT F NG +A A LD+NG+ +VI+ L+ ++
Sbjct: 133 SSSSIDI-EKLPLKY--IEGMVAT-RFGSENNGDEMALADPSLDFNGFEEVINTLIYDR 187
>sp|A5F9F9|IRGB_VIBC3 Iron-regulated virulence regulatory protein IrgB OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=irgB PE=4 SV=1
Length = 298
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 159 NSYS-SALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLD-YNGWR 216
SYS ALES +D L + + RG+ PT+F NGF A GS + NGW+
Sbjct: 207 GSYSLPALESRLQ---SDNLAMQADAIAKGRGIGLLPTWFANGFETAHPGSLIPCVNGWQ 263
>sp|Q80V62|FACD2_MOUSE Fanconi anemia group D2 protein homolog OS=Mus musculus GN=Fancd2
PE=1 SV=2
Length = 1450
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 57 EAFFDPVCPDSRDAWP-PLKQ--ALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRT 113
+AF C +P P+K L+ Y +V++LLPL Y + A SRA +
Sbjct: 660 DAFVVDFCAAPEGDFPFPVKALYGLEEYSTQDGIVINLLPLFYQECAKDASRATSQESSQ 719
Query: 114 NSSATFCLLEWF 125
S ++ CL F
Sbjct: 720 RSMSSLCLASHF 731
>sp|Q5P7H3|ARLY_AROAE Argininosuccinate lyase OS=Aromatoleum aromaticum (strain EbN1)
GN=argH PE=3 SV=1
Length = 465
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 25 FNSCSKSQSTPPAKYDGFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH 84
F C K + P ++P+D + + E FD VC +S DA A++
Sbjct: 191 FTDCRKRVNRLPLGAAALAGTSYPIDREFVARELGFDEVCHNSLDAVSDRDFAIEFCAAS 250
Query: 85 VSLVVHL 91
L+ HL
Sbjct: 251 ALLMTHL 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,957,519
Number of Sequences: 539616
Number of extensions: 3532343
Number of successful extensions: 6765
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6763
Number of HSP's gapped (non-prelim): 9
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)