Query 026422
Match_columns 238
No_of_seqs 172 out of 1394
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03023 DsbA_Com1_like DsbA fa 100.0 2.2E-27 4.8E-32 183.5 16.1 151 50-220 4-154 (154)
2 PF13462 Thioredoxin_4: Thiore 100.0 4E-27 8.7E-32 184.0 15.2 159 39-221 2-162 (162)
3 PRK10954 periplasmic protein d 99.9 3.4E-26 7.5E-31 186.3 19.5 177 36-226 22-207 (207)
4 COG2761 FrnE Predicted dithiol 99.9 4.4E-26 9.6E-31 183.5 19.1 172 51-234 3-224 (225)
5 cd03019 DsbA_DsbA DsbA family, 99.9 4.5E-26 9.7E-31 180.8 18.0 163 50-226 14-176 (178)
6 cd03024 DsbA_FrnE DsbA family, 99.9 5E-23 1.1E-27 166.6 15.2 152 56-220 1-201 (201)
7 PF01323 DSBA: DSBA-like thior 99.9 2.2E-22 4.9E-27 161.6 14.2 151 55-220 1-193 (193)
8 cd03022 DsbA_HCCA_Iso DsbA fam 99.9 3.3E-21 7.1E-26 154.7 15.6 149 56-219 1-191 (192)
9 cd03025 DsbA_FrnE_like DsbA fa 99.9 2.1E-20 4.5E-25 150.3 14.8 136 55-199 2-176 (193)
10 COG1651 DsbG Protein-disulfide 99.8 3E-19 6.5E-24 148.9 15.0 165 42-223 77-243 (244)
11 PF13743 Thioredoxin_5: Thiore 99.8 3.8E-19 8.3E-24 141.1 13.5 132 58-198 2-153 (176)
12 cd03021 DsbA_GSTK DsbA family, 99.7 9.1E-16 2E-20 125.2 14.4 143 55-205 2-197 (209)
13 PRK11657 dsbG disulfide isomer 99.7 5.2E-16 1.1E-20 129.7 12.8 137 40-220 108-249 (251)
14 PRK10877 protein disulfide iso 99.6 2.9E-15 6.4E-20 123.8 12.6 130 41-222 99-230 (232)
15 cd02972 DsbA_family DsbA famil 99.6 3.2E-15 7E-20 105.9 11.0 93 57-205 2-96 (98)
16 COG3917 NahD 2-hydroxychromene 99.6 6.2E-14 1.3E-18 107.9 17.3 145 52-206 6-190 (203)
17 COG3531 Predicted protein-disu 99.6 4.1E-14 8.9E-19 110.6 14.9 156 58-224 6-210 (212)
18 cd03020 DsbA_DsbC_DsbG DsbA fa 99.6 1.3E-14 2.9E-19 117.2 12.3 129 39-218 67-196 (197)
19 PF13098 Thioredoxin_2: Thiore 98.5 1.6E-07 3.6E-12 68.4 5.9 37 183-219 73-112 (112)
20 TIGR00411 redox_disulf_1 small 98.4 2.8E-06 6.1E-11 58.2 8.1 34 55-88 2-35 (82)
21 cd02950 TxlA TRX-like protein 98.2 1.7E-05 3.8E-10 60.6 9.2 91 51-226 20-113 (142)
22 PRK09381 trxA thioredoxin; Pro 98.0 5.4E-05 1.2E-09 54.8 9.3 35 52-87 22-56 (109)
23 KOG0910 Thioredoxin-like prote 98.0 4.1E-05 8.9E-10 58.3 8.2 87 51-224 61-149 (150)
24 COG3118 Thioredoxin domain-con 97.9 4.6E-05 1E-09 64.2 8.3 88 51-225 43-132 (304)
25 cd02963 TRX_DnaJ TRX domain, D 97.9 4.7E-05 1E-09 55.6 7.5 38 185-222 72-111 (111)
26 PTZ00443 Thioredoxin domain-co 97.9 0.00035 7.7E-09 57.5 12.7 51 185-235 99-152 (224)
27 PRK14018 trifunctional thiored 97.8 0.00046 9.9E-09 63.4 13.4 41 51-92 56-97 (521)
28 PRK10996 thioredoxin 2; Provis 97.8 0.00015 3.2E-09 55.3 8.5 39 185-223 99-139 (139)
29 cd02956 ybbN ybbN protein fami 97.8 0.00027 5.8E-09 49.8 8.9 32 52-84 13-44 (96)
30 cd03004 PDI_a_ERdj5_C PDIa fam 97.7 0.00018 3.9E-09 51.5 7.5 34 52-86 20-53 (104)
31 TIGR01068 thioredoxin thioredo 97.7 0.00058 1.3E-08 48.0 9.3 38 52-90 15-52 (101)
32 TIGR01126 pdi_dom protein disu 97.5 0.00099 2.2E-08 47.0 8.7 30 52-82 14-43 (102)
33 PRK15412 thiol:disulfide inter 97.4 0.001 2.2E-08 53.1 7.9 43 185-227 135-180 (185)
34 TIGR02187 GlrX_arch Glutaredox 97.3 0.0016 3.5E-08 53.2 8.9 41 184-224 69-112 (215)
35 cd02994 PDI_a_TMX PDIa family, 97.2 0.0015 3.3E-08 46.3 6.6 28 54-82 19-46 (101)
36 PRK03147 thiol-disulfide oxido 97.1 0.019 4.1E-07 44.8 12.9 39 51-90 61-100 (173)
37 PRK11509 hydrogenase-1 operon 97.0 0.00047 1E-08 51.8 2.8 47 181-227 80-128 (132)
38 PTZ00102 disulphide isomerase; 97.0 0.016 3.4E-07 52.8 13.0 41 184-225 98-140 (477)
39 PTZ00062 glutaredoxin; Provisi 96.9 0.025 5.4E-07 45.9 12.1 36 53-90 19-54 (204)
40 TIGR00385 dsbE periplasmic pro 96.9 0.0053 1.1E-07 48.4 8.0 41 185-225 130-173 (173)
41 cd03065 PDI_b_Calsequestrin_N 96.9 0.0014 3E-08 48.6 4.1 40 183-223 78-119 (120)
42 cd02962 TMX2 TMX2 family; comp 96.7 0.0067 1.4E-07 46.9 6.9 38 52-90 48-86 (152)
43 PF13905 Thioredoxin_8: Thiore 96.7 0.0035 7.7E-08 43.9 4.9 39 52-91 2-42 (95)
44 cd03026 AhpF_NTD_C TRX-GRX-lik 96.6 0.0049 1.1E-07 43.1 4.8 38 52-90 12-49 (89)
45 cd02954 DIM1 Dim1 family; Dim1 96.4 0.007 1.5E-07 44.4 5.1 38 52-90 15-52 (114)
46 PLN02919 haloacid dehalogenase 96.4 0.035 7.6E-07 55.7 11.5 114 51-224 420-537 (1057)
47 cd03003 PDI_a_ERdj5_N PDIa fam 96.4 0.0078 1.7E-07 42.7 5.1 38 52-90 19-56 (101)
48 PF13192 Thioredoxin_3: Thiore 96.4 0.003 6.6E-08 42.7 2.7 34 185-220 42-76 (76)
49 TIGR00412 redox_disulf_2 small 96.2 0.0074 1.6E-07 40.8 3.9 32 55-87 2-33 (76)
50 COG2143 Thioredoxin-related pr 96.2 0.0066 1.4E-07 46.6 3.9 46 183-228 106-154 (182)
51 cd02949 TRX_NTR TRX domain, no 96.1 0.015 3.2E-07 41.0 5.2 38 52-90 14-51 (97)
52 PF00085 Thioredoxin: Thioredo 96.1 0.011 2.5E-07 41.5 4.6 39 51-90 17-55 (103)
53 cd03002 PDI_a_MPD1_like PDI fa 96.1 0.015 3.3E-07 41.6 5.2 37 52-89 19-55 (109)
54 TIGR01295 PedC_BrcD bacterioci 96.0 0.012 2.7E-07 43.7 4.7 37 52-91 24-60 (122)
55 cd02952 TRP14_like Human TRX-r 96.0 0.015 3.2E-07 43.1 4.9 39 52-91 22-67 (119)
56 cd03006 PDI_a_EFP1_N PDIa fami 95.9 0.018 3.9E-07 42.2 5.1 39 51-90 29-67 (113)
57 cd02973 TRX_GRX_like Thioredox 95.9 0.016 3.5E-07 37.7 4.4 35 55-90 2-36 (67)
58 cd02965 HyaE HyaE family; HyaE 95.9 0.019 4.1E-07 41.9 5.0 39 52-90 28-67 (111)
59 cd02967 mauD Methylamine utili 95.9 0.014 3E-07 42.2 4.4 38 51-89 21-58 (114)
60 TIGR00412 redox_disulf_2 small 95.9 0.0068 1.5E-07 41.0 2.5 33 185-219 42-75 (76)
61 KOG0907 Thioredoxin [Posttrans 95.8 0.018 3.8E-07 41.7 4.7 38 51-90 21-58 (106)
62 TIGR03143 AhpF_homolog putativ 95.8 0.11 2.3E-06 48.7 11.1 38 53-91 367-404 (555)
63 COG5429 Uncharacterized secret 95.8 0.17 3.6E-06 41.5 10.4 38 52-90 41-78 (261)
64 PHA02278 thioredoxin-like prot 95.8 0.021 4.5E-07 41.1 4.8 38 52-90 15-52 (103)
65 cd03026 AhpF_NTD_C TRX-GRX-lik 95.7 0.011 2.5E-07 41.3 3.1 31 183-215 56-86 (89)
66 cd02948 TRX_NDPK TRX domain, T 95.7 0.026 5.7E-07 40.2 5.1 32 51-83 17-48 (102)
67 PLN02399 phospholipid hydroper 95.6 0.24 5.1E-06 41.2 10.9 39 51-90 99-138 (236)
68 cd02985 TRX_CDSP32 TRX family, 95.5 0.028 6E-07 40.2 4.7 37 51-89 15-51 (103)
69 cd02989 Phd_like_TxnDC9 Phosdu 95.5 0.028 6.1E-07 41.0 4.7 37 52-90 23-59 (113)
70 cd03001 PDI_a_P5 PDIa family, 95.4 0.039 8.4E-07 38.9 5.2 37 52-89 19-55 (103)
71 TIGR01130 ER_PDI_fam protein d 95.4 0.077 1.7E-06 47.9 8.2 42 184-225 67-111 (462)
72 cd02951 SoxW SoxW family; SoxW 95.3 0.028 6.2E-07 41.5 4.4 44 183-226 75-122 (125)
73 cd02999 PDI_a_ERp44_like PDIa 95.3 0.021 4.7E-07 40.6 3.6 31 51-82 18-48 (100)
74 cd02957 Phd_like Phosducin (Ph 95.2 0.037 8E-07 40.2 4.5 35 52-88 25-59 (113)
75 cd02982 PDI_b'_family Protein 95.2 0.043 9.2E-07 38.8 4.7 38 52-90 13-50 (103)
76 KOG3160 Gamma-interferon induc 95.1 0.64 1.4E-05 38.1 11.9 151 51-225 38-208 (220)
77 cd02993 PDI_a_APS_reductase PD 95.1 0.059 1.3E-06 38.8 5.3 37 51-88 21-58 (109)
78 PF00085 Thioredoxin: Thioredo 95.1 0.024 5.1E-07 39.8 3.2 40 182-221 61-102 (103)
79 cd02995 PDI_a_PDI_a'_C PDIa fa 95.0 0.065 1.4E-06 37.7 5.4 31 52-83 19-49 (104)
80 PTZ00056 glutathione peroxidas 95.0 0.23 4.9E-06 40.1 8.9 39 51-90 39-78 (199)
81 PLN00410 U5 snRNP protein, DIM 94.9 0.066 1.4E-06 40.8 5.2 39 51-90 23-61 (142)
82 PF06764 DUF1223: Protein of u 94.8 0.086 1.9E-06 42.7 6.1 35 55-90 1-35 (202)
83 cd02953 DsbDgamma DsbD gamma f 94.8 0.046 1E-06 38.9 4.1 37 52-89 12-51 (104)
84 cd02965 HyaE HyaE family; HyaE 94.7 0.032 7E-07 40.7 2.9 34 183-216 74-109 (111)
85 cd02961 PDI_a_family Protein D 94.6 0.09 1.9E-06 36.3 5.2 38 52-90 16-55 (101)
86 PRK15317 alkyl hydroperoxide r 94.6 0.53 1.2E-05 43.6 11.6 39 181-221 158-196 (517)
87 cd02998 PDI_a_ERp38 PDIa famil 94.6 0.086 1.9E-06 37.1 5.0 30 52-82 19-48 (105)
88 TIGR03140 AhpF alkyl hydropero 94.5 0.12 2.7E-06 47.8 7.2 39 182-222 160-198 (515)
89 cd03005 PDI_a_ERp46 PDIa famil 94.5 0.093 2E-06 36.8 5.0 30 53-83 18-47 (102)
90 cd02948 TRX_NDPK TRX domain, T 94.5 0.039 8.4E-07 39.3 3.0 38 184-222 63-102 (102)
91 TIGR02738 TrbB type-F conjugat 94.5 0.24 5.1E-06 38.3 7.6 30 52-82 51-80 (153)
92 cd03000 PDI_a_TMX3 PDIa family 94.3 0.13 2.8E-06 36.6 5.5 30 52-82 16-45 (104)
93 cd02951 SoxW SoxW family; SoxW 94.3 0.062 1.3E-06 39.6 3.9 37 52-89 15-54 (125)
94 cd02986 DLP Dim1 family, Dim1- 94.3 0.12 2.5E-06 37.9 5.0 39 51-90 14-52 (114)
95 cd02997 PDI_a_PDIR PDIa family 94.2 0.13 2.8E-06 36.2 5.2 30 52-82 18-47 (104)
96 PF08534 Redoxin: Redoxin; In 94.1 0.067 1.5E-06 40.4 3.9 41 51-91 28-69 (146)
97 PHA02278 thioredoxin-like prot 94.1 0.051 1.1E-06 39.1 2.9 34 184-217 64-99 (103)
98 cd02949 TRX_NTR TRX domain, no 94.1 0.048 1E-06 38.4 2.7 36 184-219 59-96 (97)
99 cd02973 TRX_GRX_like Thioredox 94.0 0.031 6.8E-07 36.3 1.6 20 184-203 44-63 (67)
100 TIGR02661 MauD methylamine deh 94.0 0.43 9.3E-06 38.1 8.4 31 51-82 74-104 (189)
101 PTZ00051 thioredoxin; Provisio 93.9 0.13 2.9E-06 35.9 4.8 35 52-88 19-53 (98)
102 PTZ00256 glutathione peroxidas 93.9 0.6 1.3E-05 37.0 9.0 38 52-89 41-79 (183)
103 cd02996 PDI_a_ERp44 PDIa famil 93.9 0.15 3.3E-06 36.4 5.1 29 52-81 19-47 (108)
104 PRK11200 grxA glutaredoxin 1; 93.8 0.07 1.5E-06 36.6 3.1 36 55-91 2-37 (85)
105 cd02975 PfPDO_like_N Pyrococcu 93.8 0.14 3E-06 37.3 4.9 35 54-90 25-59 (113)
106 TIGR02196 GlrX_YruB Glutaredox 93.8 0.08 1.7E-06 34.5 3.2 30 186-219 44-73 (74)
107 cd02987 Phd_like_Phd Phosducin 93.7 0.13 2.7E-06 40.7 4.8 36 53-90 85-120 (175)
108 cd02984 TRX_PICOT TRX domain, 93.6 0.14 3E-06 35.6 4.4 36 52-88 15-50 (97)
109 PRK11200 grxA glutaredoxin 1; 93.5 0.19 4.2E-06 34.4 4.9 32 186-223 52-83 (85)
110 cd02947 TRX_family TRX family; 93.5 0.18 3.9E-06 33.9 4.8 37 52-90 11-47 (93)
111 COG0526 TrxA Thiol-disulfide i 93.5 0.18 3.9E-06 35.1 4.9 40 52-92 33-72 (127)
112 cd02959 ERp19 Endoplasmic reti 93.5 0.11 2.5E-06 38.1 3.9 38 51-89 19-56 (117)
113 cd03012 TlpA_like_DipZ_like Tl 93.4 0.36 7.9E-06 35.5 6.6 38 52-90 24-62 (126)
114 cd02966 TlpA_like_family TlpA- 93.2 0.21 4.5E-06 35.1 4.9 38 52-90 20-58 (116)
115 cd02964 TryX_like_family Trypa 92.9 0.21 4.5E-06 37.2 4.7 38 52-90 18-58 (132)
116 KOG0190 Protein disulfide isom 92.7 0.13 2.7E-06 47.1 3.7 38 51-89 384-421 (493)
117 TIGR01295 PedC_BrcD bacterioci 92.7 0.1 2.3E-06 38.6 2.7 34 186-219 84-120 (122)
118 TIGR02187 GlrX_arch Glutaredox 92.6 0.22 4.7E-06 40.6 4.8 37 52-89 133-169 (215)
119 cd02953 DsbDgamma DsbD gamma f 92.6 0.17 3.8E-06 35.8 3.8 37 183-219 63-103 (104)
120 cd02947 TRX_family TRX family; 92.6 0.12 2.6E-06 34.8 2.8 36 184-219 55-92 (93)
121 cd03003 PDI_a_ERdj5_N PDIa fam 92.5 0.16 3.5E-06 35.8 3.5 35 183-217 63-99 (101)
122 cd02997 PDI_a_PDIR PDIa family 92.4 0.12 2.6E-06 36.3 2.7 36 183-218 66-103 (104)
123 cd03010 TlpA_like_DsbE TlpA-li 92.4 0.24 5.1E-06 36.4 4.3 37 51-90 25-61 (127)
124 cd03009 TryX_like_TryX_NRX Try 92.3 0.28 6.1E-06 36.3 4.7 39 51-90 18-59 (131)
125 cd03007 PDI_a_ERp29_N PDIa fam 92.3 0.26 5.7E-06 36.2 4.3 40 182-221 68-114 (116)
126 cd02992 PDI_a_QSOX PDIa family 92.3 0.32 7E-06 35.4 4.9 30 52-82 20-49 (114)
127 cd02988 Phd_like_VIAF Phosduci 92.2 0.18 4E-06 40.5 3.8 37 52-90 103-139 (192)
128 cd03000 PDI_a_TMX3 PDIa family 92.1 0.2 4.2E-06 35.6 3.5 40 183-222 63-103 (104)
129 cd02996 PDI_a_ERp44 PDIa famil 92.1 0.18 3.8E-06 36.1 3.2 37 183-219 69-108 (108)
130 cd03005 PDI_a_ERp46 PDIa famil 92.0 0.13 2.9E-06 36.0 2.5 36 183-218 64-101 (102)
131 cd02961 PDI_a_family Protein D 92.0 0.19 4.2E-06 34.5 3.3 37 182-218 61-100 (101)
132 KOG3425 Uncharacterized conser 92.0 0.19 4.2E-06 36.9 3.2 30 63-92 44-73 (128)
133 cd02985 TRX_CDSP32 TRX family, 91.7 0.27 5.8E-06 35.0 3.8 36 183-219 62-99 (103)
134 PF00462 Glutaredoxin: Glutare 91.7 0.24 5.2E-06 31.4 3.3 31 56-92 1-31 (60)
135 cd02999 PDI_a_ERp44_like PDIa 91.6 0.16 3.4E-06 36.1 2.4 36 183-219 63-100 (100)
136 TIGR00424 APS_reduc 5'-adenyly 91.4 0.34 7.4E-06 44.2 4.9 38 51-89 371-409 (463)
137 PF13192 Thioredoxin_3: Thiore 91.3 0.34 7.4E-06 32.5 3.8 34 55-91 2-35 (76)
138 cd01659 TRX_superfamily Thiore 91.2 0.4 8.6E-06 29.1 3.9 33 58-91 3-35 (69)
139 cd02958 UAS UAS family; UAS is 91.2 0.35 7.7E-06 35.0 4.1 42 183-224 67-112 (114)
140 cd03002 PDI_a_MPD1_like PDI fa 91.1 0.26 5.6E-06 35.0 3.2 37 183-219 65-108 (109)
141 cd02975 PfPDO_like_N Pyrococcu 90.8 0.32 7E-06 35.3 3.5 42 183-224 66-111 (113)
142 cd03032 ArsC_Spx Arsenate Redu 90.7 4.5 9.7E-05 29.4 9.6 31 56-92 2-32 (115)
143 PF06053 DUF929: Domain of unk 90.7 1.3 2.9E-05 36.9 7.4 40 50-91 57-96 (249)
144 TIGR02183 GRXA Glutaredoxin, G 90.7 0.25 5.3E-06 34.1 2.7 34 56-90 2-35 (86)
145 cd03001 PDI_a_P5 PDIa family, 90.3 0.37 8E-06 33.7 3.4 37 183-219 63-102 (103)
146 cd03008 TryX_like_RdCVF Trypar 90.2 0.52 1.1E-05 36.1 4.3 31 51-82 25-55 (146)
147 PHA02125 thioredoxin-like prot 90.2 0.33 7E-06 32.4 2.9 35 184-219 38-73 (75)
148 PF00462 Glutaredoxin: Glutare 90.1 0.51 1.1E-05 29.8 3.6 15 189-203 46-60 (60)
149 cd02969 PRX_like1 Peroxiredoxi 89.9 0.52 1.1E-05 36.7 4.3 39 51-90 25-64 (171)
150 cd02998 PDI_a_ERp38 PDIa famil 89.9 0.33 7.2E-06 34.0 2.9 36 183-218 66-104 (105)
151 TIGR02740 TraF-like TraF-like 89.8 0.52 1.1E-05 40.0 4.5 36 52-90 167-202 (271)
152 PF00578 AhpC-TSA: AhpC/TSA fa 89.5 0.7 1.5E-05 33.5 4.5 40 51-91 25-66 (124)
153 PRK13728 conjugal transfer pro 89.3 0.61 1.3E-05 37.1 4.1 44 186-229 128-177 (181)
154 cd02982 PDI_b'_family Protein 89.2 0.76 1.7E-05 32.2 4.4 40 183-222 57-102 (103)
155 cd02968 SCO SCO (an acronym fo 88.9 0.73 1.6E-05 34.4 4.3 40 51-91 22-66 (142)
156 PTZ00102 disulphide isomerase; 88.7 0.66 1.4E-05 42.2 4.6 32 51-83 375-406 (477)
157 PRK01655 spxA transcriptional 88.6 8.4 0.00018 28.8 10.3 33 185-221 84-116 (131)
158 TIGR02180 GRX_euk Glutaredoxin 88.6 0.94 2E-05 30.3 4.3 20 186-205 48-67 (84)
159 TIGR01130 ER_PDI_fam protein d 88.6 0.8 1.7E-05 41.3 5.1 37 51-88 364-403 (462)
160 PLN02309 5'-adenylylsulfate re 88.3 0.9 1.9E-05 41.5 5.1 32 51-83 365-396 (457)
161 cd02954 DIM1 Dim1 family; Dim1 88.3 0.82 1.8E-05 33.5 4.0 22 183-204 59-82 (114)
162 cd00340 GSH_Peroxidase Glutath 87.9 0.86 1.9E-05 34.8 4.2 36 52-89 23-59 (152)
163 PLN02412 probable glutathione 87.8 0.73 1.6E-05 35.9 3.8 38 52-90 30-68 (167)
164 cd03029 GRX_hybridPRX5 Glutare 87.7 1 2.2E-05 29.5 3.9 26 188-219 46-71 (72)
165 TIGR02540 gpx7 putative glutat 87.7 0.81 1.8E-05 34.9 3.9 38 52-90 23-61 (153)
166 PF13728 TraF: F plasmid trans 87.6 0.64 1.4E-05 38.0 3.4 29 53-82 122-150 (215)
167 TIGR02200 GlrX_actino Glutared 87.5 0.26 5.6E-06 32.5 0.9 22 56-77 2-23 (77)
168 cd02984 TRX_PICOT TRX domain, 87.2 0.6 1.3E-05 32.3 2.7 36 183-219 59-96 (97)
169 TIGR02183 GRXA Glutaredoxin, G 87.0 1.6 3.5E-05 29.9 4.8 27 189-221 54-80 (86)
170 cd03027 GRX_DEP Glutaredoxin ( 86.9 0.73 1.6E-05 30.4 2.9 29 56-90 3-31 (73)
171 COG2143 Thioredoxin-related pr 86.4 2.8 6.1E-05 32.5 6.0 23 52-75 43-65 (182)
172 TIGR02190 GlrX-dom Glutaredoxi 86.3 1.4 3E-05 29.6 4.0 27 187-219 52-78 (79)
173 TIGR02180 GRX_euk Glutaredoxin 86.3 0.42 9.2E-06 32.1 1.5 21 58-78 3-23 (84)
174 cd02971 PRX_family Peroxiredox 86.2 1.2 2.6E-05 33.0 4.1 40 51-90 22-62 (140)
175 cd03011 TlpA_like_ScsD_MtbDsbE 86.2 0.89 1.9E-05 33.0 3.3 28 52-80 21-48 (123)
176 PF06110 DUF953: Eukaryotic pr 86.0 0.94 2E-05 33.4 3.2 30 62-91 36-65 (119)
177 TIGR02181 GRX_bact Glutaredoxi 85.9 1.5 3.3E-05 29.2 4.1 19 187-205 44-62 (79)
178 KOG0191 Thioredoxin/protein di 85.9 1.1 2.4E-05 39.9 4.3 37 51-88 47-83 (383)
179 PHA02125 thioredoxin-like prot 85.7 0.7 1.5E-05 30.8 2.3 20 58-77 4-23 (75)
180 PLN00410 U5 snRNP protein, DIM 85.5 1.5 3.2E-05 33.5 4.2 46 183-228 68-125 (142)
181 PHA03050 glutaredoxin; Provisi 85.2 2.1 4.4E-05 31.0 4.7 19 187-205 64-82 (108)
182 KOG2501 Thioredoxin, nucleored 85.1 1.3 2.7E-05 34.3 3.7 39 51-90 33-74 (157)
183 cd03014 PRX_Atyp2cys Peroxired 85.0 1.3 2.9E-05 33.1 3.8 39 51-90 26-64 (143)
184 KOG0908 Thioredoxin-like prote 85.0 1.4 3.1E-05 36.7 4.1 42 185-227 67-110 (288)
185 PTZ00051 thioredoxin; Provisio 85.0 0.61 1.3E-05 32.4 1.8 32 183-215 62-95 (98)
186 PF11287 DUF3088: Protein of u 84.6 0.41 8.9E-06 34.7 0.8 34 62-96 22-55 (112)
187 PF14595 Thioredoxin_9: Thiore 84.6 2 4.3E-05 32.1 4.5 37 53-90 42-78 (129)
188 TIGR02194 GlrX_NrdH Glutaredox 84.5 0.83 1.8E-05 30.1 2.2 29 57-91 2-30 (72)
189 PHA03050 glutaredoxin; Provisi 84.5 0.71 1.5E-05 33.4 2.0 22 56-77 15-36 (108)
190 cd03419 GRX_GRXh_1_2_like Glut 84.3 0.69 1.5E-05 30.9 1.8 22 56-77 2-23 (82)
191 TIGR03143 AhpF_homolog putativ 84.3 1.5 3.2E-05 41.1 4.5 38 52-90 476-513 (555)
192 PF07449 HyaE: Hydrogenase-1 e 84.2 0.91 2E-05 32.8 2.4 36 180-215 70-107 (107)
193 PRK15317 alkyl hydroperoxide r 84.1 1.5 3.3E-05 40.6 4.5 38 52-90 116-153 (517)
194 PRK13703 conjugal pilus assemb 84.0 0.86 1.9E-05 38.1 2.5 43 185-227 199-245 (248)
195 TIGR02196 GlrX_YruB Glutaredox 83.6 0.86 1.9E-05 29.4 2.0 30 56-91 2-31 (74)
196 TIGR02189 GlrX-like_plant Glut 83.5 0.79 1.7E-05 32.5 1.9 22 56-77 10-31 (99)
197 cd02066 GRX_family Glutaredoxi 83.5 0.93 2E-05 29.0 2.1 22 56-77 2-23 (72)
198 cd02970 PRX_like2 Peroxiredoxi 83.1 2.5 5.5E-05 31.5 4.7 39 52-90 24-63 (149)
199 cd03418 GRX_GRXb_1_3_like Glut 83.1 0.96 2.1E-05 29.7 2.1 21 56-76 2-22 (75)
200 cd02976 NrdH NrdH-redoxin (Nrd 83.0 2.2 4.7E-05 27.3 3.8 26 189-218 47-72 (73)
201 TIGR02181 GRX_bact Glutaredoxi 82.8 0.79 1.7E-05 30.7 1.6 29 57-91 2-30 (79)
202 cd03029 GRX_hybridPRX5 Glutare 82.6 1.1 2.4E-05 29.3 2.2 30 56-91 3-32 (72)
203 TIGR01626 ytfJ_HI0045 conserve 82.5 4.8 0.0001 32.1 6.1 28 51-79 59-86 (184)
204 TIGR02194 GlrX_NrdH Glutaredox 82.5 1.7 3.7E-05 28.5 3.1 27 187-217 43-70 (72)
205 cd02989 Phd_like_TxnDC9 Phosdu 82.4 2.5 5.5E-05 30.6 4.2 21 183-203 66-88 (113)
206 COG0695 GrxC Glutaredoxin and 82.3 2.7 5.8E-05 28.5 4.1 17 189-205 50-66 (80)
207 PRK10329 glutaredoxin-like pro 82.3 1.2 2.6E-05 30.3 2.3 21 56-76 3-23 (81)
208 TIGR02190 GlrX-dom Glutaredoxi 82.2 1.1 2.5E-05 30.1 2.2 32 54-91 8-39 (79)
209 cd03419 GRX_GRXh_1_2_like Glut 81.7 3.2 6.9E-05 27.6 4.3 21 185-205 46-66 (82)
210 cd02995 PDI_a_PDI_a'_C PDIa fa 81.6 1.2 2.7E-05 30.9 2.3 34 185-218 66-103 (104)
211 TIGR03140 AhpF alkyl hydropero 81.4 2.3 5E-05 39.4 4.6 38 52-90 117-154 (515)
212 TIGR02739 TraF type-F conjugat 81.3 1.9 4E-05 36.3 3.5 42 185-226 206-251 (256)
213 KOG4277 Uncharacterized conser 81.2 0.98 2.1E-05 38.6 1.8 28 51-79 43-70 (468)
214 PF03227 GILT: Gamma interfero 81.0 2.7 5.9E-05 30.3 3.9 38 55-92 2-42 (108)
215 KOG1731 FAD-dependent sulfhydr 80.9 1.4 2.9E-05 40.9 2.8 29 52-81 58-86 (606)
216 cd02957 Phd_like Phosducin (Ph 80.7 0.53 1.2E-05 34.0 0.1 22 183-204 67-90 (113)
217 COG3634 AhpF Alkyl hydroperoxi 80.6 1.4 3E-05 38.8 2.6 36 184-221 161-196 (520)
218 PRK10638 glutaredoxin 3; Provi 80.5 1.4 3E-05 29.9 2.1 21 56-76 4-24 (83)
219 COG0695 GrxC Glutaredoxin and 80.3 1.4 3.1E-05 29.9 2.1 31 56-92 3-33 (80)
220 cd03006 PDI_a_EFP1_N PDIa fami 80.2 1.6 3.4E-05 31.9 2.4 32 186-217 78-111 (113)
221 PRK00293 dipZ thiol:disulfide 80.1 2.6 5.7E-05 39.7 4.5 41 183-223 525-570 (571)
222 PRK10329 glutaredoxin-like pro 79.9 4.3 9.4E-05 27.5 4.5 31 187-221 45-75 (81)
223 TIGR02740 TraF-like TraF-like 79.7 2.5 5.5E-05 35.8 3.9 44 182-225 219-266 (271)
224 cd03017 PRX_BCP Peroxiredoxin 79.6 3.4 7.3E-05 30.6 4.2 40 51-90 23-63 (140)
225 cd03036 ArsC_like Arsenate Red 79.3 1.4 3.1E-05 31.9 2.0 30 57-92 2-31 (111)
226 cd03027 GRX_DEP Glutaredoxin ( 79.3 3 6.6E-05 27.3 3.5 26 186-217 45-70 (73)
227 COG5494 Predicted thioredoxin/ 79.1 2.4 5.3E-05 34.3 3.3 36 185-222 52-87 (265)
228 smart00594 UAS UAS domain. 78.9 4 8.7E-05 29.9 4.4 38 182-219 76-121 (122)
229 cd02977 ArsC_family Arsenate R 78.6 1.5 3.2E-05 31.3 1.9 30 57-92 2-31 (105)
230 cd02955 SSP411 TRX domain, SSP 78.5 4.7 0.0001 29.9 4.6 21 51-72 15-35 (124)
231 cd03065 PDI_b_Calsequestrin_N 78.3 5 0.00011 29.6 4.7 39 53-91 28-72 (120)
232 cd02976 NrdH NrdH-redoxin (Nrd 77.9 1.9 4.1E-05 27.6 2.1 21 56-76 2-22 (73)
233 KOG0191 Thioredoxin/protein di 77.9 3.4 7.4E-05 36.7 4.4 36 52-88 163-200 (383)
234 cd03011 TlpA_like_ScsD_MtbDsbE 76.9 2.5 5.4E-05 30.6 2.7 35 184-218 85-121 (123)
235 cd03028 GRX_PICOT_like Glutare 76.9 5.1 0.00011 27.7 4.2 19 187-205 58-76 (90)
236 cd02969 PRX_like1 Peroxiredoxi 76.9 5.6 0.00012 30.8 4.9 49 183-231 100-160 (171)
237 TIGR02189 GlrX-like_plant Glut 76.8 5.5 0.00012 28.1 4.4 21 185-205 54-74 (99)
238 cd03418 GRX_GRXb_1_3_like Glut 76.7 4.8 0.0001 26.2 3.9 20 186-205 44-64 (75)
239 PRK09437 bcp thioredoxin-depen 76.6 3.3 7.1E-05 31.4 3.4 40 51-90 30-70 (154)
240 cd02959 ERp19 Endoplasmic reti 76.1 1.7 3.7E-05 31.8 1.6 39 187-225 69-115 (117)
241 PF07511 DUF1525: Protein of u 76.1 5 0.00011 29.4 4.0 25 180-204 71-95 (114)
242 PF13899 Thioredoxin_7: Thiore 76.0 1.8 3.8E-05 29.3 1.6 23 51-74 17-39 (82)
243 cd02955 SSP411 TRX domain, SSP 75.8 5.3 0.00011 29.6 4.2 19 187-205 75-96 (124)
244 cd03018 PRX_AhpE_like Peroxire 75.7 4.5 9.8E-05 30.3 4.0 39 52-90 29-68 (149)
245 TIGR01617 arsC_related transcr 75.6 2.2 4.8E-05 31.1 2.1 30 57-92 2-31 (117)
246 cd02962 TMX2 TMX2 family; comp 74.0 2.8 6.1E-05 32.3 2.4 31 189-219 105-148 (152)
247 cd03010 TlpA_like_DsbE TlpA-li 73.6 2.6 5.6E-05 30.8 2.1 32 183-214 91-125 (127)
248 cd02066 GRX_family Glutaredoxi 73.6 4.5 9.7E-05 25.6 3.0 21 185-205 43-63 (72)
249 PRK00522 tpx lipid hydroperoxi 73.5 5.2 0.00011 31.1 3.9 39 51-90 44-82 (167)
250 PRK10638 glutaredoxin 3; Provi 73.0 7.1 0.00015 26.3 4.0 21 185-205 45-65 (83)
251 TIGR00365 monothiol glutaredox 72.1 7.6 0.00016 27.3 4.1 18 188-205 63-80 (97)
252 PF07293 DUF1450: Protein of u 71.8 6.9 0.00015 26.6 3.6 32 191-226 44-75 (78)
253 cd02991 UAS_ETEA UAS family, E 71.5 8.4 0.00018 28.1 4.4 44 182-225 66-115 (116)
254 TIGR02738 TrbB type-F conjugat 70.8 5.1 0.00011 30.9 3.2 35 189-223 115-153 (153)
255 cd02983 P5_C P5 family, C-term 70.7 10 0.00022 28.3 4.7 47 184-231 71-123 (130)
256 TIGR02200 GlrX_actino Glutared 70.5 5.6 0.00012 25.9 3.0 29 187-219 46-75 (77)
257 KOG0907 Thioredoxin [Posttrans 70.0 4 8.6E-05 29.4 2.3 38 183-221 65-104 (106)
258 cd02960 AGR Anterior Gradient 69.9 3.5 7.5E-05 31.0 2.0 23 51-74 23-45 (130)
259 PRK10606 btuE putative glutath 69.7 6.1 0.00013 31.4 3.5 40 52-94 26-65 (183)
260 PF04134 DUF393: Protein of un 69.5 3.6 7.7E-05 29.6 2.0 20 58-77 1-20 (114)
261 PRK13669 hypothetical protein; 68.9 9.5 0.00021 25.9 3.7 31 191-225 44-74 (78)
262 TIGR00365 monothiol glutaredox 68.6 3.8 8.2E-05 28.9 1.9 16 62-77 25-40 (97)
263 TIGR03757 conj_TIGR03757 integ 68.6 12 0.00027 27.3 4.5 25 180-204 72-96 (113)
264 KOG0190 Protein disulfide isom 68.3 5.9 0.00013 36.5 3.5 44 182-225 89-134 (493)
265 PRK00293 dipZ thiol:disulfide 67.5 8.2 0.00018 36.4 4.4 36 51-88 474-512 (571)
266 PRK13728 conjugal transfer pro 67.5 9.9 0.00021 30.2 4.2 27 55-82 73-99 (181)
267 PF07172 GRP: Glycine rich pro 67.5 4.9 0.00011 28.4 2.3 21 9-29 3-23 (95)
268 cd02987 Phd_like_Phd Phosducin 66.7 7.3 0.00016 30.7 3.4 38 183-220 126-172 (175)
269 cd02993 PDI_a_APS_reductase PD 66.6 5.8 0.00013 28.2 2.6 32 187-218 73-108 (109)
270 PTZ00062 glutaredoxin; Provisi 66.5 7.6 0.00017 31.5 3.5 34 188-222 58-93 (204)
271 cd03035 ArsC_Yffb Arsenate Red 66.2 5 0.00011 28.8 2.1 30 57-92 2-31 (105)
272 PRK12559 transcriptional regul 64.9 6.7 0.00014 29.4 2.7 33 185-221 84-116 (131)
273 PF05605 zf-Di19: Drought indu 64.4 4.6 9.9E-05 25.1 1.5 19 61-80 2-20 (54)
274 KOG1752 Glutaredoxin and relat 64.4 13 0.00028 26.7 4.0 18 188-205 63-80 (104)
275 PLN02412 probable glutathione 63.9 9 0.0002 29.7 3.4 37 189-225 127-166 (167)
276 cd03081 TRX_Fd_NuoE_FDH_gamma 63.4 9.7 0.00021 25.7 3.1 28 191-222 53-80 (80)
277 cd03040 GST_N_mPGES2 GST_N fam 63.2 6.2 0.00013 25.9 2.1 30 56-91 2-31 (77)
278 PRK13344 spxA transcriptional 63.0 7.3 0.00016 29.2 2.6 33 185-221 84-116 (132)
279 cd03033 ArsC_15kD Arsenate Red 61.3 7.6 0.00016 28.3 2.4 31 56-92 2-32 (113)
280 TIGR01626 ytfJ_HI0045 conserve 60.1 12 0.00025 29.9 3.4 35 185-219 138-176 (184)
281 PRK12759 bifunctional gluaredo 60.1 6.2 0.00013 35.6 2.1 21 56-76 4-24 (410)
282 COG3019 Predicted metal-bindin 60.1 20 0.00043 27.2 4.4 23 53-75 25-47 (149)
283 cd02988 Phd_like_VIAF Phosduci 59.9 11 0.00023 30.3 3.2 36 185-220 145-189 (192)
284 PF02114 Phosducin: Phosducin; 58.8 15 0.00032 31.1 4.0 37 53-91 148-184 (265)
285 cd03009 TryX_like_TryX_NRX Try 58.5 10 0.00023 27.7 2.8 23 182-204 89-114 (131)
286 KOG0908 Thioredoxin-like prote 58.1 17 0.00037 30.5 4.1 34 51-85 21-54 (288)
287 PF13728 TraF: F plasmid trans 57.8 9.9 0.00022 31.0 2.8 39 181-219 172-214 (215)
288 cd03015 PRX_Typ2cys Peroxiredo 57.3 16 0.00035 28.3 3.8 38 52-90 30-69 (173)
289 PRK10824 glutaredoxin-4; Provi 55.9 6.2 0.00013 28.9 1.1 17 189-205 67-83 (115)
290 PRK13703 conjugal pilus assemb 54.9 19 0.0004 30.2 3.9 23 183-206 167-189 (248)
291 TIGR02739 TraF type-F conjugat 54.7 21 0.00045 30.0 4.2 23 183-208 174-198 (256)
292 PRK10824 glutaredoxin-4; Provi 53.4 27 0.00058 25.5 4.2 16 62-77 28-43 (115)
293 PF01216 Calsequestrin: Calseq 53.1 15 0.00032 32.3 3.1 44 181-225 101-146 (383)
294 PF09673 TrbC_Ftype: Type-F co 52.1 13 0.00029 27.0 2.3 17 184-200 63-80 (113)
295 PHA03075 glutaredoxin-like pro 51.9 23 0.0005 25.9 3.5 30 52-82 2-31 (123)
296 TIGR02661 MauD methylamine deh 51.1 30 0.00066 27.3 4.5 38 184-222 138-178 (189)
297 PF06953 ArsD: Arsenical resis 50.6 18 0.00038 26.9 2.8 38 185-223 65-102 (123)
298 COG4545 Glutaredoxin-related p 50.1 6.3 0.00014 26.5 0.3 20 58-77 6-25 (85)
299 TIGR02742 TrbC_Ftype type-F co 49.8 15 0.00033 27.5 2.4 15 184-198 63-77 (130)
300 KOG4277 Uncharacterized conser 49.0 21 0.00047 30.7 3.4 39 184-223 92-132 (468)
301 cd02964 TryX_like_family Trypa 48.5 19 0.0004 26.5 2.8 22 183-204 90-114 (132)
302 cd03082 TRX_Fd_NuoE_W_FDH_beta 48.4 27 0.00058 23.1 3.2 25 192-220 46-70 (72)
303 PF05984 Cytomega_UL20A: Cytom 47.7 20 0.00044 24.5 2.5 21 9-29 2-22 (100)
304 COG3011 Predicted thiol-disulf 47.4 18 0.00038 27.4 2.4 22 56-77 10-31 (137)
305 TIGR02395 rpoN_sigma RNA polym 46.8 55 0.0012 29.8 5.9 96 117-231 293-391 (429)
306 PRK00753 psbL photosystem II r 46.7 49 0.0011 18.9 3.5 19 9-27 15-33 (39)
307 cd03031 GRX_GRX_like Glutaredo 46.1 38 0.00083 25.9 4.2 16 190-205 58-73 (147)
308 cd03041 GST_N_2GST_N GST_N fam 45.4 16 0.00034 24.1 1.7 21 57-77 3-23 (77)
309 COG1905 NuoE NADH:ubiquinone o 45.3 25 0.00054 27.4 3.0 30 192-225 130-159 (160)
310 TIGR02540 gpx7 putative glutat 44.8 23 0.0005 26.7 2.9 33 191-223 114-153 (153)
311 cd03055 GST_N_Omega GST_N fami 42.9 30 0.00065 23.5 2.9 23 54-76 17-39 (89)
312 PF15240 Pro-rich: Proline-ric 42.2 16 0.00034 28.9 1.5 14 16-29 1-14 (179)
313 CHL00038 psbL photosystem II p 42.2 66 0.0014 18.3 3.6 19 9-27 14-32 (38)
314 PF02630 SCO1-SenC: SCO1/SenC; 41.9 76 0.0017 24.7 5.4 41 50-91 51-95 (174)
315 COG4232 Thiol:disulfide interc 41.5 42 0.0009 31.6 4.3 42 181-222 523-567 (569)
316 cd03030 GRX_SH3BGR Glutaredoxi 41.3 55 0.0012 22.8 4.1 25 188-218 56-80 (92)
317 cd03064 TRX_Fd_NuoE TRX-like [ 41.3 39 0.00084 22.5 3.2 26 192-221 54-79 (80)
318 KOG0912 Thiol-disulfide isomer 41.1 30 0.00065 29.9 3.1 44 182-225 62-108 (375)
319 COG1651 DsbG Protein-disulfide 40.9 16 0.00035 29.9 1.5 28 53-80 119-146 (244)
320 cd02958 UAS UAS family; UAS is 40.3 23 0.00049 25.3 2.0 21 51-72 17-37 (114)
321 PRK12759 bifunctional gluaredo 39.8 44 0.00095 30.1 4.2 21 186-206 54-74 (410)
322 COG3019 Predicted metal-bindin 39.7 32 0.0007 26.1 2.7 33 186-221 70-102 (149)
323 PRK13730 conjugal transfer pil 39.4 31 0.00068 27.9 2.8 32 184-215 154-186 (212)
324 PF08534 Redoxin: Redoxin; In 39.2 23 0.00049 26.3 2.0 22 183-204 96-129 (146)
325 cd03008 TryX_like_RdCVF Trypar 39.0 30 0.00065 26.4 2.6 22 183-204 103-127 (146)
326 cd03051 GST_N_GTT2_like GST_N 38.5 21 0.00046 22.7 1.5 21 57-77 2-22 (74)
327 KOG2703 C4-type Zn-finger prot 37.9 20 0.00042 32.0 1.6 34 58-91 65-98 (460)
328 PF08525 OapA_N: Opacity-assoc 37.4 60 0.0013 17.5 2.9 21 5-25 5-25 (30)
329 PF09654 DUF2396: Protein of u 36.5 16 0.00035 27.6 0.7 15 61-75 6-20 (161)
330 TIGR00424 APS_reduc 5'-adenyly 36.4 42 0.00091 30.9 3.5 37 186-222 422-462 (463)
331 TIGR02652 conserved hypothetic 36.1 16 0.00035 27.6 0.7 15 61-75 9-23 (163)
332 KOG3196 NADH:ubiquinone oxidor 35.9 41 0.00089 27.0 2.9 34 191-228 165-198 (233)
333 TIGR03137 AhpC peroxiredoxin. 35.5 36 0.00079 26.8 2.7 38 52-90 32-71 (187)
334 PF13894 zf-C2H2_4: C2H2-type 35.2 13 0.00029 17.9 0.1 18 62-79 1-18 (24)
335 PRK05932 RNA polymerase factor 34.9 1.1E+02 0.0023 28.2 5.9 98 117-231 318-415 (455)
336 PHA00616 hypothetical protein 34.7 29 0.00063 20.7 1.5 19 62-80 2-20 (44)
337 PLN02309 5'-adenylylsulfate re 34.3 57 0.0012 29.9 4.1 40 183-222 412-456 (457)
338 PF00096 zf-C2H2: Zinc finger, 34.3 11 0.00023 18.5 -0.4 18 62-79 1-18 (23)
339 cd03037 GST_N_GRX2 GST_N famil 34.1 28 0.0006 22.3 1.6 18 58-75 3-20 (71)
340 PF00837 T4_deiodinase: Iodoth 34.0 38 0.00081 28.2 2.6 40 51-91 102-141 (237)
341 cd00570 GST_N_family Glutathio 33.9 28 0.0006 21.3 1.5 19 58-76 3-21 (71)
342 PF01257 2Fe-2S_thioredx: Thio 33.8 35 0.00076 25.9 2.3 26 193-222 119-144 (145)
343 cd03017 PRX_BCP Peroxiredoxin 33.7 34 0.00074 25.0 2.2 37 183-219 91-139 (140)
344 TIGR00014 arsC arsenate reduct 32.4 35 0.00076 24.7 2.0 30 57-92 2-31 (114)
345 PHA00407 phage lambda Rz1-like 31.8 1.2E+02 0.0027 20.4 4.2 40 2-42 19-62 (84)
346 cd03045 GST_N_Delta_Epsilon GS 31.5 33 0.00071 22.0 1.6 20 57-76 2-21 (74)
347 cd03072 PDI_b'_ERp44 PDIb' fam 31.2 77 0.0017 22.7 3.6 41 184-225 63-110 (111)
348 cd03059 GST_N_SspA GST_N famil 31.0 33 0.00073 21.8 1.6 19 58-76 3-21 (73)
349 PRK07571 bidirectional hydroge 30.6 72 0.0016 25.0 3.6 27 192-222 141-167 (169)
350 cd03083 TRX_Fd_NuoE_hoxF TRX-l 30.3 70 0.0015 21.4 3.1 27 191-221 53-79 (80)
351 cd03034 ArsC_ArsC Arsenate Red 30.2 40 0.00087 24.2 2.0 30 57-92 2-31 (112)
352 cd03060 GST_N_Omega_like GST_N 29.8 38 0.00082 21.7 1.7 19 58-76 3-21 (71)
353 TIGR01616 nitro_assoc nitrogen 29.5 50 0.0011 24.5 2.4 31 56-92 3-33 (126)
354 PF03470 zf-XS: XS zinc finger 29.5 19 0.00041 21.4 0.1 6 64-69 1-6 (43)
355 PF05768 DUF836: Glutaredoxin- 29.3 41 0.0009 22.5 1.8 34 56-91 2-35 (81)
356 PF07098 DUF1360: Protein of u 29.2 20 0.00043 25.8 0.2 14 62-75 58-71 (105)
357 PF13417 GST_N_3: Glutathione 29.1 84 0.0018 20.3 3.3 29 59-93 2-30 (75)
358 PF01667 Ribosomal_S27e: Ribos 28.9 15 0.00032 23.2 -0.4 13 59-71 5-17 (55)
359 cd03007 PDI_a_ERp29_N PDIa fam 28.9 57 0.0012 23.9 2.6 27 52-81 19-45 (116)
360 PRK10026 arsenate reductase; P 28.3 55 0.0012 24.9 2.5 31 56-92 4-34 (141)
361 PRK12469 RNA polymerase factor 27.9 1.4E+02 0.003 27.7 5.4 98 117-231 344-441 (481)
362 PRK05988 formate dehydrogenase 27.9 86 0.0019 24.2 3.5 27 192-222 128-154 (156)
363 PF11238 DUF3039: Protein of u 27.8 20 0.00042 22.8 -0.0 14 61-74 44-57 (58)
364 PF14255 Cys_rich_CPXG: Cystei 26.8 25 0.00054 21.8 0.3 12 62-73 1-12 (52)
365 KOG0914 Thioredoxin-like prote 26.3 3.8E+02 0.0082 22.2 7.0 29 53-82 146-174 (265)
366 cd03053 GST_N_Phi GST_N family 25.8 53 0.0012 21.1 1.8 21 56-76 2-22 (76)
367 COG1393 ArsC Arsenate reductas 25.8 64 0.0014 23.6 2.4 31 56-92 3-33 (117)
368 TIGR03738 PRTRC_C PRTRC system 25.7 1.2E+02 0.0025 19.9 3.2 26 195-220 8-33 (66)
369 PF10555 MraY_sig1: Phospho-N- 25.6 28 0.00061 15.1 0.3 6 191-196 2-7 (13)
370 cd02974 AhpF_NTD_N Alkyl hydro 24.7 2E+02 0.0043 20.1 4.6 37 53-91 20-56 (94)
371 PRK10853 putative reductase; P 24.3 63 0.0014 23.6 2.1 31 56-92 2-32 (118)
372 PF12911 OppC_N: N-terminal TM 24.2 77 0.0017 19.3 2.3 20 10-29 15-34 (56)
373 PF07908 D-aminoacyl_C: D-amin 23.9 53 0.0011 19.8 1.4 16 190-205 17-32 (48)
374 PF14353 CpXC: CpXC protein 23.4 21 0.00045 26.4 -0.6 15 59-73 36-50 (128)
375 PF13719 zinc_ribbon_5: zinc-r 23.3 26 0.00055 19.9 -0.1 13 63-75 4-16 (37)
376 TIGR02049 gshA_ferroox glutama 23.1 4.8E+02 0.01 23.4 7.5 48 174-221 238-288 (403)
377 COG3809 Uncharacterized protei 22.8 48 0.001 22.5 1.1 18 63-80 23-43 (88)
378 TIGR02098 MJ0042_CXXC MJ0042 f 22.3 22 0.00049 20.0 -0.5 11 62-72 3-13 (38)
379 PF04475 DUF555: Protein of un 21.9 65 0.0014 22.9 1.6 20 50-70 37-56 (102)
380 cd03015 PRX_Typ2cys Peroxiredo 21.7 1.6E+02 0.0035 22.6 4.1 43 184-226 105-160 (173)
381 PF03190 Thioredox_DsbH: Prote 21.7 62 0.0013 25.3 1.7 21 51-72 37-57 (163)
382 KOG3286 Selenoprotein T [Gener 21.2 1.6E+02 0.0034 23.9 3.9 55 54-111 70-124 (226)
383 PF13848 Thioredoxin_6: Thiore 21.2 1.7E+02 0.0036 22.3 4.1 37 184-220 141-183 (184)
384 TIGR01958 nuoE_fam NADH-quinon 21.2 1.2E+02 0.0027 22.9 3.3 27 192-222 121-147 (148)
385 PRK00415 rps27e 30S ribosomal 21.2 30 0.00064 22.1 -0.1 13 59-71 9-21 (59)
386 PF00674 DUP: DUP family; Int 20.7 2.2E+02 0.0048 20.2 4.3 31 174-204 62-92 (108)
387 PRK13190 putative peroxiredoxi 20.6 1.3E+02 0.0027 24.1 3.4 38 52-89 28-66 (202)
388 cd03056 GST_N_4 GST_N family, 20.5 69 0.0015 20.2 1.5 18 58-75 3-20 (73)
389 COG1060 ThiH Thiamine biosynth 20.4 3.5E+02 0.0075 24.1 6.3 23 180-202 203-225 (370)
390 PRK12373 NADH dehydrogenase su 20.0 1.6E+02 0.0034 26.6 4.0 31 192-226 143-173 (400)
No 1
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=99.95 E-value=2.2e-27 Score=183.51 Aligned_cols=151 Identities=18% Similarity=0.342 Sum_probs=123.7
Q ss_pred CCCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCCcchHHHHHHHHHHHhcCCchhHHHHHHHHHhh
Q 026422 50 DSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQ 129 (238)
Q Consensus 50 ~a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q 129 (238)
++++++++ |+||.||||+.+++.++++..+++ +++++++++|+. ++.+..+++++.++...+++.+|+|++++|+.+
T Consensus 4 ~a~~~i~~-f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~ 80 (154)
T cd03023 4 NGDVTIVE-FFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEFPIL-GESSVLAARVALAVWKNGPGKYLEFHNALMATR 80 (154)
T ss_pred CCCEEEEE-EECCCChhHHHhhHHHHHHHHHCC-CceEEEEeCCcc-CcchHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 56666665 999999999999999999888876 799999988874 345677888888887666677999999999865
Q ss_pred HhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEEEcCEEcCCCCCC
Q 026422 130 EKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSP 209 (238)
Q Consensus 130 ~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~vnG~~~~~~~~~ 209 (238)
.. .+... +.+++. .+|++ .++|.+++++.++++.++.+.+.+.++||+|||||+|||+.+.|.
T Consensus 81 ~~--------~~~~~----l~~~a~-~~gl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~--- 143 (154)
T cd03023 81 GR--------LNEES----LLRIAK-KAGLD-EAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGA--- 143 (154)
T ss_pred CC--------CCHHH----HHHHHH-HcCCC-HHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCC---
Confidence 31 12222 334443 68999 899999999999999999999999999999999999999988764
Q ss_pred CCHhhHHHHHH
Q 026422 210 LDYNGWRKVID 220 (238)
Q Consensus 210 ~~~e~~~~~i~ 220 (238)
.+++.+.+.|+
T Consensus 144 ~~~~~l~~~i~ 154 (154)
T cd03023 144 VPADTLKEAID 154 (154)
T ss_pred CCHHHHHHHhC
Confidence 88999888764
No 2
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=99.95 E-value=4e-27 Score=184.03 Aligned_cols=159 Identities=27% Similarity=0.426 Sum_probs=127.9
Q ss_pred CCCeeecCCCCCCCceEEEEeeCCCCchhhhhchhHHHHHHHh--CCcEEEEEEeccccCCcchHHHHHHHHHHHhcCCc
Q 026422 39 YDGFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHY--GPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSS 116 (238)
Q Consensus 39 ~~~~~~g~~~~~a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~--~~~v~~~~~~~pl~~~~~s~~aa~a~~~a~~~~~~ 116 (238)
..++++|++ ++++++++ |+||.||||+++++.+.++++++ +++|+|+++++|+..+. +..++.++.++...+ .
T Consensus 2 ~~~~~~G~~--~a~~~v~~-f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~-~~~a~~~~~~~~~~~-~ 76 (162)
T PF13462_consen 2 EYDPTIGNP--DAPITVTE-FFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHS-SLRAAMAAECVADQG-K 76 (162)
T ss_dssp TTSEEES-T--TTSEEEEE-EE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHH-HHHHHHHHHHHHHHT-H
T ss_pred CCCCeecCC--CCCeEEEE-EECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchh-HHHHHHHHHHHHHHh-H
Confidence 467888987 46565555 99999999999999999999999 78999999998876544 678889999998887 6
Q ss_pred hhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceE
Q 026422 117 ATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTF 196 (238)
Q Consensus 117 ~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~ 196 (238)
.++.+++.+|+.+..+.. . ..| ++ ..+.+ .++|.+++++..+...++.+.+.+++.||+|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~-------~----~~i---~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~ 140 (162)
T PF13462_consen 77 YFWFFHELLFSQQENFEN-------K----KDI---AA-NAGGS-NEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTF 140 (162)
T ss_dssp HHHHHHHHHHHHCHSTSS-------H----HHH---HH-HTTSH-HHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEE
T ss_pred HHHHHHHHHHHhhhccch-------h----HHH---HH-HcCCC-HHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEE
Confidence 688888888888766432 1 222 22 24555 68899999999999999999999999999999999
Q ss_pred EEcCEEcCCCCCCCCHhhHHHHHHH
Q 026422 197 FVNGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 197 ~vnG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
+|||+++.+ .++.++|.++|++
T Consensus 141 ~inG~~~~~---~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 141 FINGKYVVG---PYTIEELKELIDK 162 (162)
T ss_dssp EETTCEEET---TTSHHHHHHHHHH
T ss_pred EECCEEeCC---CCCHHHHHHHHcC
Confidence 999999865 4899999999975
No 3
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=99.95 E-value=3.4e-26 Score=186.29 Aligned_cols=177 Identities=14% Similarity=0.160 Sum_probs=125.7
Q ss_pred CCCCCCeeecCCCCCCCceEEEEeeCCCCchhhhhchhH---HHHHHHhCCcEEEEEEeccccCCcchHHHHHHHHHHHh
Q 026422 36 PAKYDGFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPL---KQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNR 112 (238)
Q Consensus 36 ~~~~~~~~~g~~~~~a~~~~ve~f~D~~Cp~C~~~~~~l---~~~~~~~~~~v~~~~~~~pl~~~~~s~~aa~a~~~a~~ 112 (238)
+..+.+|+.-+.+.+.++.+|| |+||.||||+.+++.+ +.+.+.++++++++.+++++. .+.+..+++++.++..
T Consensus 22 ~~~G~~Y~~~~~p~~~~~~VvE-ffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~f~-~~~~~~~~~a~~~a~~ 99 (207)
T PRK10954 22 FTDGKQYTTLDKPVAGEPQVLE-FFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVEFL-GPLGKELTQAWAVAMA 99 (207)
T ss_pred ccCCceeEEecCcCCCCCeEEE-EeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccccc-chhhHHHHHHHHHHHH
Confidence 4455566554433345788999 9999999999999976 788888998999998877663 1333344555544444
Q ss_pred cCCchhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccc
Q 026422 113 TNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYA 192 (238)
Q Consensus 113 ~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~g 192 (238)
.+. ..++++.+|+... .+. +....+ .|.+++. ..|+| .++|.+++++..+...++++.+.++++||+|
T Consensus 100 ~~~--~~k~~~~lf~~i~---~~~--~~~~~~---~L~~~a~-~~Gld-~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~g 167 (207)
T PRK10954 100 LGV--EDKVTPPLFEGVQ---KTQ--TIQSAA---DIRDVFI-KAGVK-GEDYDAAWNSFVVKSLVAQQEKAAADLQLRG 167 (207)
T ss_pred hCc--HHHHHHHHHHHHH---ccC--CCCCHH---HHHHHHH-HcCCC-HHHHHHHHhChHHHHHHHHHHHHHHHcCCCC
Confidence 443 1234444554321 111 122222 2344554 58999 8999999999999999999999999999999
Q ss_pred cceEEEcCEEcCCCCC------CCCHhhHHHHHHHhhhhc
Q 026422 193 TPTFFVNGFSLAGAGS------PLDYNGWRKVIDPLLSEK 226 (238)
Q Consensus 193 tPt~~vnG~~~~~~~~------~~~~e~~~~~i~~ll~~~ 226 (238)
||||+|||+++.+.++ ..+.+++.++|++|++|+
T Consensus 168 tPtfiInGky~v~~~~~~~~~~~~~~~~~~~~i~~L~~k~ 207 (207)
T PRK10954 168 VPAMFVNGKYMVNNQGMDTSSMDVYVQQYADVVKFLLEKK 207 (207)
T ss_pred CCEEEECCEEEEccccccccchhhhHHHHHHHHHHHHcCC
Confidence 9999999999876544 226799999999998874
No 4
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=4.4e-26 Score=183.48 Aligned_cols=172 Identities=22% Similarity=0.330 Sum_probs=145.0
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcE--EEEEEeccc-----c----------------------------
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHV--SLVVHLLPL-----P---------------------------- 95 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v--~~~~~~~pl-----~---------------------------- 95 (238)
..++.|++|+|+.||||+..++.|++++.++++.+ +++++++-+ +
T Consensus 3 ~~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~~~~ 82 (225)
T COG2761 3 PMKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHARLEE 82 (225)
T ss_pred CceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHHHHH
Confidence 35788999999999999999999999999998654 455554421 0
Q ss_pred ---------------CCcchHHHHHHHHHHHhcCCchhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 026422 96 ---------------YHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNS 160 (238)
Q Consensus 96 ---------------~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d 160 (238)
+.+++..|++++.+|+.+|+ ..+.|.+++|+. ++.++ +|+++.+++.+ +|. ..|+|
T Consensus 83 ~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~-~~~~~~~~lf~A---yF~eg-~nI~D~dVL~d---iA~-~~GLD 153 (225)
T COG2761 83 LAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGK-AQDRFLEALFEA---YFEEG-RNIGDEDVLAD---IAE-EVGLD 153 (225)
T ss_pred hhHhcCcccchhhccCCCchHHHHHHHHHHHHhCc-hHHHHHHHHHHH---HhccC-CCCCcHHHHHH---HHH-HhCCC
Confidence 34788999999999999997 789999999976 55544 58999877655 453 68999
Q ss_pred chHHHhcccCChhHHHHHHHHHHHHhcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHHhhhhcCCCCCCCC
Q 026422 161 YSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPL 234 (238)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ll~~~~~~~~~~~ 234 (238)
.++|.+.+.+....+.++++.+.++++||+|+|||+++|++.. .|.++++.+..+|..++++.....++|+
T Consensus 154 -~~~~~~~L~s~~~~~avr~d~~~A~e~gI~gVP~fv~d~~~~V--~Gaq~~~v~~~al~~~~~~~~~~~~~~~ 224 (225)
T COG2761 154 -REEFKADLASDAAKDAVRQDEAAAQEMGIRGVPTFVFDGKYAV--SGAQPYDVLEDALRQLLAEKAEEHKPPL 224 (225)
T ss_pred -HHHHHHHHhChHHHHHHHHHHHHHHHCCCccCceEEEcCcEee--cCCCCHHHHHHHHHHHHhcccccCCCCC
Confidence 8999999999999999999999999999999999999777754 5679999999999999999888777665
No 5
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=99.95 E-value=4.5e-26 Score=180.84 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=129.2
Q ss_pred CCCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCCcchHHHHHHHHHHHhcCCchhHHHHHHHHHhh
Q 026422 50 DSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQ 129 (238)
Q Consensus 50 ~a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q 129 (238)
++++++++ |+||.||||+.+++.+.+++++++++++|+++++++. +..+..+++++.++...+. +++|++.+|+.+
T Consensus 14 ~~~~~i~~-f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~aa~a~~aa~~~~~--~~~~~~~lf~~~ 89 (178)
T cd03019 14 SGKPEVIE-FFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFG-GGEGEPLARAFYAAEALGL--EDKLHAALFEAI 89 (178)
T ss_pred CCCcEEEE-EECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCccc-cccchHHHHHHHHHHHcCc--HhhhhHHHHHHH
Confidence 56778887 9999999999999999999999988888887765542 2335678888888776654 889999999986
Q ss_pred HhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEEEcCEEcCCCCCC
Q 026422 130 EKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSP 209 (238)
Q Consensus 130 ~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~vnG~~~~~~~~~ 209 (238)
.... .+.+..+.+ .+++. ..|++ .++|.+++++.+++..++++.+.+.++||+|||||+|||+++.+..+.
T Consensus 90 ~~~~----~~~~~~~~l---~~~a~-~~Gl~-~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~~~~ 160 (178)
T cd03019 90 HEKR----KRLLDPDDI---RKIFL-SQGVD-KKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPSAI 160 (178)
T ss_pred HHhC----CCCCCHHHH---HHHHH-HhCCC-HHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEChhhc
Confidence 4422 123333333 44553 68999 899999999999999999999999999999999999999998876555
Q ss_pred CCHhhHHHHHHHhhhhc
Q 026422 210 LDYNGWRKVIDPLLSEK 226 (238)
Q Consensus 210 ~~~e~~~~~i~~ll~~~ 226 (238)
.+.+ +.+.|+.++.+.
T Consensus 161 ~~~~-~~~~~~~~~~~~ 176 (178)
T cd03019 161 GGDD-TLQVLDELIEKV 176 (178)
T ss_pred cchh-HHHHHHHHHHHh
Confidence 5555 788888888764
No 6
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=99.90 E-value=5e-23 Score=166.62 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=124.0
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhC--CcEEEEEEeccccC-------------------------------------
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYG--PHVSLVVHLLPLPY------------------------------------- 96 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~--~~v~~~~~~~pl~~------------------------------------- 96 (238)
|++|+|+.|||||..++.+.++.++++ +++++++++++|..
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~ 80 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAAAE 80 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence 578999999999999999999999996 36999998875420
Q ss_pred ----------CcchHHHHHHHHHHHhcCCchhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHh
Q 026422 97 ----------HDNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALE 166 (238)
Q Consensus 97 ----------~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~ 166 (238)
.+++..+++++.+|..++ .+++|++++|+.+ |.++ .++++.+.+.+ ++. .+|+| .++|.
T Consensus 81 gi~~~~~~~~~~~s~~a~~~~~~a~~~~--~~~~~~~~lf~a~--~~~~--~~i~~~~~l~~---~a~-~~Gld-~~~~~ 149 (201)
T cd03024 81 GLEFDFDRVRPPNTFDAHRLIHLAKEQG--KQDALVEALFRAY--FTEG--KDIGDRDVLVD---LAE-EAGLD-AAEAR 149 (201)
T ss_pred CCcccCCCCccCCcHHHHHHHHHHhccC--cHHHHHHHHHHHH--HccC--CCCCCHHHHHH---HHH-HcCCC-HHHHH
Confidence 126778889888887765 4899999999874 3332 36666665544 443 68999 89999
Q ss_pred cccCChhHHHHHHHHHHHHhcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHH
Q 026422 167 SGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID 220 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~ 220 (238)
+++++.+++..++++.+.+.+.||+|||||+|||++.. .|..+++.|.++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~--~G~~~~~~~~~~i~ 201 (201)
T cd03024 150 AVLASDEYADEVRADEARARQLGISGVPFFVFNGKYAV--SGAQPPEVFLQALR 201 (201)
T ss_pred HHhcCcccchHHHHHHHHHHHCCCCcCCEEEECCeEee--cCCCCHHHHHHHhC
Confidence 99999999999999999999999999999999998763 56799999988774
No 7
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=99.89 E-value=2.2e-22 Score=161.57 Aligned_cols=151 Identities=21% Similarity=0.341 Sum_probs=119.4
Q ss_pred EEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCC-------------------------------------
Q 026422 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYH------------------------------------- 97 (238)
Q Consensus 55 ~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~------------------------------------- 97 (238)
+|++|+|+.|||||.+++.+.++.++++ +++++++++++...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~-~~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~~~ 79 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYP-DVEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFNFP 79 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHT-TCEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TBTS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCcccCC
Confidence 4677999999999999999999999995 49999998876211
Q ss_pred ----cchHHHHHHHHHHHhcCCchhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChh
Q 026422 98 ----DNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRS 173 (238)
Q Consensus 98 ----~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~ 173 (238)
.++..+++++.++..++ ...++++++|+. ++.++ .|+++.+++.+ ++ ++.|+| .+++.+.+++++
T Consensus 80 ~~~~~~s~~a~~~~~~a~~~~--~~~~~~~al~~a---~~~~~-~~i~~~~vl~~---~~-~~~Gld-~~~~~~~~~~~~ 148 (193)
T PF01323_consen 80 PPFPGNSRPAHRAAYAAQEQG--KADAFADALFRA---YFVEG-RDISDPDVLAE---IA-EEAGLD-PDEFDAALDSPE 148 (193)
T ss_dssp STHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHTSS-T-TSSHHHHHH---HH-HHTT---HHHHHHHHTSHH
T ss_pred chhhhhhHHHHHHHHHHHHhh--hhhHHHHHHHHH---HHhcc-cCCCCHHHHHH---HH-HHcCCc-HHHHHHHhcchH
Confidence 15677888888888777 478899999875 33322 57887665544 44 368999 899999999999
Q ss_pred HHHHHHHHHHHHhcCCccccceEEEcCE-EcCCCCCCCCHhhHHHHHH
Q 026422 174 TDLLTRVSFKFSATRGVYATPTFFVNGF-SLAGAGSPLDYNGWRKVID 220 (238)
Q Consensus 174 ~~~~~~~~~~~a~~~gV~gtPt~~vnG~-~~~~~~~~~~~e~~~~~i~ 220 (238)
++..++++.+.+.++||+|||||+|||+ .+.| ..+.+.+.+.|+
T Consensus 149 ~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G---~~~~~~l~~~l~ 193 (193)
T PF01323_consen 149 VKAALEEDTAEARQLGVFGVPTFVVNGKYRFFG---ADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHHHHHHHHTTCSSSSEEEETTTEEEES---CSSHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCcccCEEEECCEEEEEC---CCCHHHHHHHhC
Confidence 9999999999999999999999999999 6665 478888887764
No 8
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=99.87 E-value=3.3e-21 Score=154.74 Aligned_cols=149 Identities=21% Similarity=0.276 Sum_probs=117.3
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccc-----------c-----------------------------
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPL-----------P----------------------------- 95 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl-----------~----------------------------- 95 (238)
|++|+|+.|||||...+.+.++..+++ +.+++|++.+ +
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~--~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 78 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHG--ATVRYRPILLGGVFKATGNVPPANRPPAKGRYRLRDLERWARRYGIPLRFP 78 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhC--CeeEEeeeeHHHHHHHhCCCCCcccccHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 568999999999999999999998886 6666665522 0
Q ss_pred --CCcchHHHHHHHHHHHhcCCchhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChh
Q 026422 96 --YHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRS 173 (238)
Q Consensus 96 --~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~ 173 (238)
+..++..+++++.++..++ +.+++|+++||+. .|.++ .++++.+++. +++. ..|+| .+++.+++++.+
T Consensus 79 ~~~~~~s~~a~~~~~~a~~~~-~~~~~~~~~lf~a--~~~~~--~~i~~~~~l~---~~a~-~~Gld-~~~~~~~~~~~~ 148 (192)
T cd03022 79 PRFPPNTLRAMRAALAAQAEG-DAAEAFARAVFRA--LWGEG--LDIADPAVLA---AVAA-AAGLD-ADELLAAADDPA 148 (192)
T ss_pred CCCCCChHHHHHHHHHHHhCc-hhHHHHHHHHHHH--HhCCC--CCCCCHHHHH---HHHH-HcCCC-HHHHHHHcCCHH
Confidence 0125777888888888777 4589999999986 23332 3566655544 4443 68999 899999999999
Q ss_pred HHHHHHHHHHHHhcCCccccceEEEcCEEcCCCCCCCCHhhHHHHH
Q 026422 174 TDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 174 ~~~~~~~~~~~a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i 219 (238)
++..++++.+.+.++||+|||||+|||+.++|. ..++.+.+.|
T Consensus 149 ~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~---~~l~~~~~~l 191 (192)
T cd03022 149 VKAALRANTEEAIARGVFGVPTFVVDGEMFWGQ---DRLDMLEEAL 191 (192)
T ss_pred HHHHHHHHHHHHHHcCCCcCCeEEECCeeeccc---ccHHHHHHHh
Confidence 999999999999999999999999999999874 5666665554
No 9
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=99.85 E-value=2.1e-20 Score=150.30 Aligned_cols=136 Identities=18% Similarity=0.299 Sum_probs=111.7
Q ss_pred EEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCCc------------------------------------
Q 026422 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHD------------------------------------ 98 (238)
Q Consensus 55 ~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~~------------------------------------ 98 (238)
.|++|+|+.||||+..++.+.++.++|+++++++++++++..+.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 81 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLELLL 81 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHhccc
Confidence 46789999999999999999999999976798998887652111
Q ss_pred ---chHHHHHHHHHHHhcCCchhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHH
Q 026422 99 ---NAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTD 175 (238)
Q Consensus 99 ---~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~ 175 (238)
+|..+++++.+++.++++.+++|++++|+.. |.++ .++++.+++.+ ++ ++.|+| .++|.+++++.+++
T Consensus 82 ~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~--~~~~--~~i~~~~~l~~---ia-~~~Gld-~~~~~~~~~s~~~~ 152 (193)
T cd03025 82 FDLDSAPASRAIKAARLQGPERLLEMLKAIQRAH--YVEG--RDLADTEVLRE---LA-IELGLD-VEEFLEDFQSDEAK 152 (193)
T ss_pred CCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHH--HHcC--CCCCCHHHHHH---HH-HHcCCC-HHHHHHHHcChHHH
Confidence 2677888888888888777899999998763 4332 46777655544 44 368999 89999999999999
Q ss_pred HHHHHHHHHHhcCCccccceEEEc
Q 026422 176 LLTRVSFKFSATRGVYATPTFFVN 199 (238)
Q Consensus 176 ~~~~~~~~~a~~~gV~gtPt~~vn 199 (238)
..++++.+.+.++||+|||||+|+
T Consensus 153 ~~l~~~~~~a~~~gv~g~Ptfvv~ 176 (193)
T cd03025 153 QAIQEDQKLARELGINGFPTLVLE 176 (193)
T ss_pred HHHHHHHHHHHHcCCCccCEEEEE
Confidence 999999999999999999999994
No 10
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3e-19 Score=148.91 Aligned_cols=165 Identities=24% Similarity=0.396 Sum_probs=115.3
Q ss_pred eeecCCCCCCCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCC--cchHHHHHHHHHHHhcCCchhH
Q 026422 42 FFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYH--DNAYATSRALHIVNRTNSSATF 119 (238)
Q Consensus 42 ~~~g~~~~~a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~--~~s~~aa~a~~~a~~~~~~~~~ 119 (238)
...|+. ++++++++ |+||.||||+..++.+.+.+..++ +++++++++|+..+ +....+++++.|+..++...||
T Consensus 77 ~~~G~~--~~~v~v~~-f~d~~Cp~C~~~~~~l~~~~i~~~-~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~~~~y~ 152 (244)
T COG1651 77 VVLGNP--YAPVTVVE-FFDYTCPYCKEAFPELKKKYIDDG-KVRLVLREFPFLDPACPYCRRAAQAARCAADQGIVRYW 152 (244)
T ss_pred ccccCC--CCCceEEE-EecCcCccHHHHHHHHHHHhhhcC-CCceEEEEeecCCCCcHHHHHHHHHHHHhccccchhHH
Confidence 345554 46777787 999999999999999998777766 67999998877322 2234577777777766545699
Q ss_pred HHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEEEc
Q 026422 120 CLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVN 199 (238)
Q Consensus 120 ~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~vn 199 (238)
.|++.+|..|..+..... ....+... + .....+ ..+..+++.......+..+.+.+.++||.|||||+||
T Consensus 153 ~~~~~l~~~~~~~~~~~~------~~~~~~~~-~-~~~~~~--~~~~~~~~~~~~~~~i~~~~~~a~~~gv~gTPt~~v~ 222 (244)
T COG1651 153 AFHDALFGSQAEAWAASI------LCAKDLAK-A-DLAALD--EGKKAKLNQKACDALIAKNYKLAQQLGVNGTPTFIVN 222 (244)
T ss_pred HHHHHHhhccccchhhhh------hhhhhhhh-h-hHHHHH--hhhhhccChHHHHHHHHHHHHHHHhcCCCcCCeEEEC
Confidence 999999998754332211 00011000 0 011111 3445555555678889999999999999999999999
Q ss_pred CEEcCCCCCCCCHhhHHHHHHHhh
Q 026422 200 GFSLAGAGSPLDYNGWRKVIDPLL 223 (238)
Q Consensus 200 G~~~~~~~~~~~~e~~~~~i~~ll 223 (238)
|+.+.| ..+.+++.++|+...
T Consensus 223 ~~~~~g---~~~~~~l~~~i~~~~ 243 (244)
T COG1651 223 GKLVPG---LPDLDELKAIIDEAL 243 (244)
T ss_pred CeeecC---CCCHHHHHHHHHHhh
Confidence 997765 477899988887764
No 11
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=99.81 E-value=3.8e-19 Score=141.12 Aligned_cols=132 Identities=17% Similarity=0.287 Sum_probs=98.4
Q ss_pred EeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccc--------c------------CCcchHHHHHHHHHHHhcCCch
Q 026422 58 AFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPL--------P------------YHDNAYATSRALHIVNRTNSSA 117 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl--------~------------~~~~s~~aa~a~~~a~~~~~~~ 117 (238)
+|.||.|+||+.++|.+.++..+|+++|++++++..+ + ....++.+++++.+|..+|+.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg~k~ 81 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQGKKK 81 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT-H-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhChhh
Confidence 5999999999999999999999999999999886433 0 2366889999999999999887
Q ss_pred hHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEE
Q 026422 118 TFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFF 197 (238)
Q Consensus 118 ~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~ 197 (238)
..+|+.+| |...+..+ .+.++.+++.+ +| +++|+| .+.|.+.++|..++..+..+.+.|+++||+++||++
T Consensus 82 ~~~fL~~l---Q~a~~~~~-~~~s~~~~l~~---iA-~~~gLD-~~~F~~d~~S~~~~~~~~~D~~la~~m~I~~~Ptlv 152 (176)
T PF13743_consen 82 ARRFLRAL---QEALFLEG-KNYSDEELLLE---IA-EELGLD-VEMFKEDLHSDEAKQAFQEDQQLAREMGITGFPTLV 152 (176)
T ss_dssp -HHHHHHH---HHHHHTS----TTSHHHHHH---HH-HHTT---HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEE
T ss_pred HHHHHHHH---HHHHHhcC-CCCCHHHHHHH---HH-HHhCCC-HHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 88888877 55555443 46777566544 44 378999 899999999999999999999999999999999998
Q ss_pred E
Q 026422 198 V 198 (238)
Q Consensus 198 v 198 (238)
|
T Consensus 153 i 153 (176)
T PF13743_consen 153 I 153 (176)
T ss_dssp E
T ss_pred E
Confidence 7
No 12
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=99.68 E-value=9.1e-16 Score=125.16 Aligned_cols=143 Identities=20% Similarity=0.262 Sum_probs=98.3
Q ss_pred EEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccc----------------------------------------
Q 026422 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPL---------------------------------------- 94 (238)
Q Consensus 55 ~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl---------------------------------------- 94 (238)
.|++|+|+.|||||-..+.+.++.++++ +.+++|+|.|
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~--v~i~~~P~~L~~~~~~~g~~~~~~~~~k~~~~~~~~~~~a~~~Gl~~~~~ 79 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWN--VDITYVPVFLGGIMKDSGNKPPIMLPNKAKYMAKDRKRSAEFFGVPIRQP 79 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhC--CeEEEEeeehhHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCC
Confidence 4788999999999999999999887654 6777776522
Q ss_pred c-CC---cchHHHHHHHHHHHhcCCchhHHHHHHHHHhhHhhhcCCCCCCCHHHHH-HHHHHHHHhhcCCCchHHHh---
Q 026422 95 P-YH---DNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVV-KEIVKFAAEGIGNSYSSALE--- 166 (238)
Q Consensus 95 ~-~~---~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~-~~l~~~a~~~~G~d~~~~~~--- 166 (238)
+ ++ .++..+++++.++...+.....++.+++|... | ..+ .+++++.++ +.|.+++. .+|+| .+...
T Consensus 80 ~~~~~~~~nt~~a~rl~~~a~~~~~~~~~~~~~~l~~a~--f-~~g-~~i~~~~~l~~vL~~~a~-~~Gld-~~~~~~~l 153 (209)
T cd03021 80 KDFFFMKKGTLTAQRFLTAISEQHPESTLTALEALFREF--W-VRP-WSLTEPITESQSISVAAD-KLGGS-AEQAEKLL 153 (209)
T ss_pred CCCcccCcccHHHHHHHHHHHhhCcchHHHHHHHHHHHH--H-HHh-ccCCCchhhHHHHHHHHH-HcCCC-cccHHHHH
Confidence 0 11 57778999998887666431134666666541 1 111 233322222 22344553 68997 44444
Q ss_pred cccCChhHHHHHHHHHHHHhcCCccccceEEEc---C--EEcCC
Q 026422 167 SGFSDRSTDLLTRVSFKFSATRGVYATPTFFVN---G--FSLAG 205 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~vn---G--~~~~~ 205 (238)
+...+++.++.++++.+.|.++||+|+|+|+|| | +.++|
T Consensus 154 ~~~~~~~~~~~l~~~~~~A~~~Gv~GVP~fvv~~~~~~~e~fwG 197 (209)
T cd03021 154 KAASTPEVKNRLKENTDEALKYGAFGLPWIVVTNDKGKTEMFFG 197 (209)
T ss_pred HHccCHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCCccceec
Confidence 444688889999999999999999999999995 4 67776
No 13
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=99.68 E-value=5.2e-16 Score=129.73 Aligned_cols=137 Identities=16% Similarity=0.221 Sum_probs=93.1
Q ss_pred CCeeecCCCCCCCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCCcchHHHHHHHHHHHhcCCchhH
Q 026422 40 DGFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSSATF 119 (238)
Q Consensus 40 ~~~~~g~~~~~a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~~~s~~aa~a~~~a~~~~~~~~~ 119 (238)
..+.+|++ +++.+++ +|+|+.||||+++|+.+.++.+. ++|++++.++|+ .|+.|...+++++|+.+ ++++|
T Consensus 108 ~~i~~g~~--~ak~~I~-vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~-l~~~S~~~a~ailca~d--~~~a~ 179 (251)
T PRK11657 108 HWILDGKA--DAPRIVY-VFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGI-IKPDSPGKAAAILAAKD--PAKAL 179 (251)
T ss_pred CCccccCC--CCCeEEE-EEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccc-cCcchHHHHHHHHhccC--HHHHH
Confidence 45677776 3555555 59999999999999999887764 467777665554 46778777777877754 33456
Q ss_pred HHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEEE-
Q 026422 120 CLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFV- 198 (238)
Q Consensus 120 ~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~v- 198 (238)
..++..|.. .|+. .. ...+.+..+.++++.+++.++||+|||||++
T Consensus 180 ~~~~~~~~~----------------------------~~~~-~~----~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~ 226 (251)
T PRK11657 180 QEYEASGGK----------------------------LGLK-PP----ASIPAAVRKQLADNQKLMDDLGANATPAIYYM 226 (251)
T ss_pred HHHHHhhhc----------------------------cCCC-cc----ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 555543321 1111 10 0113355678889999999999999999988
Q ss_pred c--CE--EcCCCCCCCCHhhHHHHHH
Q 026422 199 N--GF--SLAGAGSPLDYNGWRKVID 220 (238)
Q Consensus 199 n--G~--~~~~~~~~~~~e~~~~~i~ 220 (238)
| |+ .+.| ..+.+++.++|.
T Consensus 227 d~~G~~~~v~G---~~~~~~L~~~l~ 249 (251)
T PRK11657 227 DKDGTLQQVVG---LPDPAQLAEIMG 249 (251)
T ss_pred CCCCCEEEecC---CCCHHHHHHHhC
Confidence 5 55 3444 578888877764
No 14
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=99.64 E-value=2.9e-15 Score=123.79 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=87.7
Q ss_pred CeeecCCCCCCCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEecccc-CCcchHHHHHHHHHHHhcCCchhH
Q 026422 41 GFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLP-YHDNAYATSRALHIVNRTNSSATF 119 (238)
Q Consensus 41 ~~~~g~~~~~a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~-~~~~s~~aa~a~~~a~~~~~~~~~ 119 (238)
.+.+|++ +++.++++ |+||.||||+++++.+.++.+ ..|++++..+|+. .|+.+...+..++|+.+ + ..
T Consensus 99 ~i~~g~~--~~k~~I~v-FtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d--~--~~ 168 (232)
T PRK10877 99 MIVYKAP--QEKHVITV-FTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAAD--R--NK 168 (232)
T ss_pred cEEecCC--CCCEEEEE-EECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCC--H--HH
Confidence 4566766 35566665 999999999999999988754 2488888777773 45556666666666532 2 22
Q ss_pred HHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEEE-
Q 026422 120 CLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFV- 198 (238)
Q Consensus 120 ~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~v- 198 (238)
.+++++ .++ .++ .. .| +..++.+.++++++||+|||||++
T Consensus 169 a~~~~~--------~~~---------------------~~~-~~---~c------~~~v~~~~~la~~lgi~gTPtiv~~ 209 (232)
T PRK10877 169 AFDDAM--------KGK---------------------DVS-PA---SC------DVDIADHYALGVQFGVQGTPAIVLS 209 (232)
T ss_pred HHHHHH--------cCC---------------------CCC-cc---cc------cchHHHhHHHHHHcCCccccEEEEc
Confidence 332221 000 111 11 12 124667889999999999999998
Q ss_pred cCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 199 NGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 199 nG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
||+.+.| ..+.+++.++|+..
T Consensus 210 ~G~~~~G---~~~~~~L~~~l~~~ 230 (232)
T PRK10877 210 NGTLVPG---YQGPKEMKAFLDEH 230 (232)
T ss_pred CCeEeeC---CCCHHHHHHHHHHc
Confidence 9999866 48999998888753
No 15
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=99.64 E-value=3.2e-15 Score=105.93 Aligned_cols=93 Identities=31% Similarity=0.368 Sum_probs=70.8
Q ss_pred EEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCCc--chHHHHHHHHHHHhcCCchhHHHHHHHHHhhHhhhc
Q 026422 57 EAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHD--NAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYN 134 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~~--~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~~~~~ 134 (238)
++|+|+.||||+.+++.++++....+++++++++++++..+. .+..+++++.++...+. ++++++++
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l--------- 70 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGK--FEALHEAL--------- 70 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCc--HHHHHHHH---------
Confidence 359999999999999999999877788999999988886543 57777777777654322 33333222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEEEcCEEcCC
Q 026422 135 APTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAG 205 (238)
Q Consensus 135 ~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~vnG~~~~~ 205 (238)
.+.+.+.++|++||||+++||+...+
T Consensus 71 ---------------------------------------------~~~~~~~~~g~~g~Pt~v~~~~~~~~ 96 (98)
T cd02972 71 ---------------------------------------------ADTALARALGVTGTPTFVVNGEKYSG 96 (98)
T ss_pred ---------------------------------------------HHHHHHHHcCCCCCCEEEECCEEcCC
Confidence 55667899999999999999955443
No 16
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.62 E-value=6.2e-14 Score=107.89 Aligned_cols=145 Identities=27% Similarity=0.376 Sum_probs=113.4
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe-----------ccc--------------------------
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL-----------LPL-------------------------- 94 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~-----------~pl-------------------------- 94 (238)
.+..||+||||..||.|.++|.++.+.++|+-.+.++-.. .|+
T Consensus 6 ~~ktIef~fdf~SP~ayL~~~~~~~laq~~ga~v~~rP~llg~vfk~tG~~~Pl~~~~~~~dY~~~d~~R~akr~Glp~~ 85 (203)
T COG3917 6 MNKTIEFYFDFSSPYAYLAWPRLPALAQAYGAAVALRPILLGGVFKATGNGVPLIKTPQPGDYITLDLKREAKRHGLPLR 85 (203)
T ss_pred CCceeEEEEecCCchHHhhhhhhHHHHHHcCCceEEEeeeeceeEeecCCCCcccccCCCCceehHHHHHHHHHcCCccc
Confidence 4567999999999999999999999999998655444211 121
Q ss_pred -c--CCcchHHHHHHHHHHHhcCCchhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCC
Q 026422 95 -P--YHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 171 (238)
Q Consensus 95 -~--~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~ 171 (238)
+ +.+++.-++|+..++...+ ..+.+|.+++|+. -|.++ .|+++++++-. ++ ..+|+| ..++.+...|
T Consensus 86 f~~~fp~nt~~~~R~~~~~~~~g-~~a~~~~~a~lrA--lw~d~--~~l~epev~~~---vA-~~aGlD-g~al~A~~gd 155 (203)
T COG3917 86 FPRHFPPNTLGAARAMIALAMGG-GLAEQFAEAVLRA--LWADG--QNLGEPEVVYA---VA-NAAGLD-GAALLALLGD 155 (203)
T ss_pred cCCCCCCchHHHHHHHHHHHhcc-chHHHHHHHHHHH--Hhhcc--cccCChHHHHH---HH-HHcCCC-HHHHHhhcCC
Confidence 0 2256677888887764443 3478888888876 46554 36778777644 34 368999 8999999999
Q ss_pred hhHHHHHHHHHHHHhcCCccccceEEEcCEEcCCC
Q 026422 172 RSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGA 206 (238)
Q Consensus 172 ~~~~~~~~~~~~~a~~~gV~gtPt~~vnG~~~~~~ 206 (238)
++++.+++.+...+.+.||.|+||||++++.++|-
T Consensus 156 ~eik~~l~a~~~~a~srGvfGaPtfivg~q~fwGq 190 (203)
T COG3917 156 DEIKARLKANTAEAVSRGVFGAPTFIVGDQLFWGQ 190 (203)
T ss_pred HHHHHHHHhhHHHHHhcCccCCCeEEECCeeeech
Confidence 99999999999999999999999999999999873
No 17
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4.1e-14 Score=110.64 Aligned_cols=156 Identities=22% Similarity=0.329 Sum_probs=115.4
Q ss_pred EeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe---c-----cc---------------------c-------------
Q 026422 58 AFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL---L-----PL---------------------P------------- 95 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~---~-----pl---------------------~------------- 95 (238)
..+|++|+|||.+.|.++++....+ +.|+++. + |+ |
T Consensus 6 YifDPmCgWCyGa~Pll~~l~~~~g--l~~~L~~GGl~aG~r~pl~~~~r~~i~~hd~rIa~lTGqpFg~~y~~~lL~~~ 83 (212)
T COG3531 6 YIFDPMCGWCYGAAPLLEALSAQPG--LEVVLHGGGLRAGNRRPLDPAFRAYILPHDQRIAQLTGQPFGQAYFDGLLRDT 83 (212)
T ss_pred EecCcchhhhhCccHHHHHHHhcCC--ceEEEecCCccCCCCCCCChHHHHHhhhhHHHHHHHhCCccchhHHhhhhccc
Confidence 4999999999999999999987654 5566542 1 11 1
Q ss_pred -CCcchHHHHHHHHHHHhcCCchhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccC-Chh
Q 026422 96 -YHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFS-DRS 173 (238)
Q Consensus 96 -~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~-~~~ 173 (238)
+..+|..+++++.+|+..+...-++|+.+| |+.+|.++ +|+++.+++.+| ++ .+|++ .+.|.+.++ +.+
T Consensus 84 ~~v~DSepa~~ai~aA~~l~~r~~l~ml~aI---QrA~YvEG-rdi~~t~vl~~l---aa-~~GL~-~~~f~~~f~~s~~ 154 (212)
T COG3531 84 GFVYDSEPACRAILAARLLDGRGRLTMLHAI---QRAHYVEG-RDITQTEVLAEL---AA-AIGLA-AEEFDNAFDQSGA 154 (212)
T ss_pred CccccccHHHHHHHHHHHhCcccchHHHHHH---HHHHHhcc-ccchhhHHHHHH---HH-HcCCC-HHHHHHhcchhHH
Confidence 225688899999999887765557888877 66677665 688887777654 43 68999 899998888 554
Q ss_pred HHHHHHH-HHHHHhcCCccccceEEE--cCEEcCCCCC--CCCHhhHHHHHHHhhh
Q 026422 174 TDLLTRV-SFKFSATRGVYATPTFFV--NGFSLAGAGS--PLDYNGWRKVIDPLLS 224 (238)
Q Consensus 174 ~~~~~~~-~~~~a~~~gV~gtPt~~v--nG~~~~~~~~--~~~~e~~~~~i~~ll~ 224 (238)
....... ...+.++.|+.|+||+.+ ||+......| ..+.++|...|...+.
T Consensus 155 ~~~~~~a~~r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 155 ARQAHIADSRRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 4444434 488899999999999998 8887554344 4567888888876653
No 18
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=99.60 E-value=1.3e-14 Score=117.19 Aligned_cols=129 Identities=19% Similarity=0.237 Sum_probs=88.1
Q ss_pred CCCeeecCCCCCCCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCCcchHHHHHHHHHHHhcCCchh
Q 026422 39 YDGFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSSAT 118 (238)
Q Consensus 39 ~~~~~~g~~~~~a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~~~s~~aa~a~~~a~~~~~~~~ 118 (238)
.+.+.+|+++ +++.++. |+|+.||||+++++.+.+ ..++++++++++|+..|+.|...+++++|+.+ + .
T Consensus 67 ~~~i~~g~~~--~~~~i~~-f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d--~--~ 135 (197)
T cd03020 67 DDAIVYGKGN--GKRVVYV-FTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKD--R--A 135 (197)
T ss_pred ccCeEEcCCC--CCEEEEE-EECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccC--H--H
Confidence 4577888873 5566665 999999999999999887 34579999999988777888888888888743 1 2
Q ss_pred HHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEEE
Q 026422 119 FCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFV 198 (238)
Q Consensus 119 ~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~v 198 (238)
..+++. +.. . .. ......| ...+..+.++++++||+|||||++
T Consensus 136 ~a~~~~-~~~-------~---------------------~~--~~~~~~~------~~~i~~~~~l~~~~gi~gtPtii~ 178 (197)
T cd03020 136 KAWTDA-MSG-------G---------------------KV--PPPAASC------DNPVAANLALGRQLGVNGTPTIVL 178 (197)
T ss_pred HHHHHH-HhC-------C---------------------CC--CCCcccc------CchHHHHHHHHHHcCCCcccEEEE
Confidence 222221 111 0 00 0000112 123456788899999999999999
Q ss_pred -cCEEcCCCCCCCCHhhHHHH
Q 026422 199 -NGFSLAGAGSPLDYNGWRKV 218 (238)
Q Consensus 199 -nG~~~~~~~~~~~~e~~~~~ 218 (238)
||+.+.|. .+.+++.++
T Consensus 179 ~~G~~~~G~---~~~~~l~~~ 196 (197)
T cd03020 179 ADGRVVPGA---PPAAQLEAL 196 (197)
T ss_pred CCCeEecCC---CCHHHHHhh
Confidence 68887654 677777654
No 19
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.55 E-value=1.6e-07 Score=68.42 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=24.9
Q ss_pred HHHhcCCccccceEEE-c--CEEcCCCCCCCCHhhHHHHH
Q 026422 183 KFSATRGVYATPTFFV-N--GFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v-n--G~~~~~~~~~~~~e~~~~~i 219 (238)
+.+..+||+||||+++ | |+.+....|..+.+++.+.|
T Consensus 73 ~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 73 ELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 4689999999999987 4 88554345678999987764
No 20
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.37 E-value=2.8e-06 Score=58.15 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=28.4
Q ss_pred EEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEE
Q 026422 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLV 88 (238)
Q Consensus 55 ~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~ 88 (238)
.|++|+...||+|..+.+.+.++.+++++++.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~ 35 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVE 35 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEE
Confidence 4678999999999999999999998887555444
No 21
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.17 E-value=1.7e-05 Score=60.63 Aligned_cols=91 Identities=18% Similarity=0.269 Sum_probs=66.9
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCCcchHHHHHHHHHHHhcCCchhHHHHHHHHHhhH
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQE 130 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~ 130 (238)
.++++|. |+...|++|+.+.|.+.++.++|+++++|+..... .+
T Consensus 20 gk~vvV~-F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd---------------------~~-------------- 63 (142)
T cd02950 20 GKPTLVE-FYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVD---------------------NP-------------- 63 (142)
T ss_pred CCEEEEE-EECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcC---------------------Cc--------------
Confidence 3578887 99999999999999999999988766666554210 00
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEEE---cCEEcCCCC
Q 026422 131 KFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFV---NGFSLAGAG 207 (238)
Q Consensus 131 ~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~v---nG~~~~~~~ 207 (238)
.| . ..+.++||.|+||+++ ||+.+....
T Consensus 64 ~~-----------------------------~--------------------~~~~~~~V~~iPt~v~~~~~G~~v~~~~ 94 (142)
T cd02950 64 KW-----------------------------L--------------------PEIDRYRVDGIPHFVFLDREGNEEGQSI 94 (142)
T ss_pred cc-----------------------------H--------------------HHHHHcCCCCCCEEEEECCCCCEEEEEe
Confidence 00 0 0124568999999975 588775556
Q ss_pred CCCCHhhHHHHHHHhhhhc
Q 026422 208 SPLDYNGWRKVIDPLLSEK 226 (238)
Q Consensus 208 ~~~~~e~~~~~i~~ll~~~ 226 (238)
|..+.+++.+.|+.++.+.
T Consensus 95 G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 95 GLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCCCHHHHHHHHHHHHcCC
Confidence 7788999999999998764
No 22
>PRK09381 trxA thioredoxin; Provisional
Probab=98.03 E-value=5.4e-05 Score=54.81 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=29.8
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSL 87 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~ 87 (238)
.+.+|. |+...||+|..+.|.++++.+++++++.+
T Consensus 22 ~~vvv~-f~~~~C~~C~~~~p~~~~l~~~~~~~~~~ 56 (109)
T PRK09381 22 GAILVD-FWAEWCGPCKMIAPILDEIADEYQGKLTV 56 (109)
T ss_pred CeEEEE-EECCCCHHHHHHhHHHHHHHHHhCCCcEE
Confidence 467787 99999999999999999999998765544
No 23
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.1e-05 Score=58.30 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=69.8
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCCcchHHHHHHHHHHHhcCCchhHHHHHHHHHhhH
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQE 130 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~ 130 (238)
..|++|+ |+-..|.-|+.+.|.+.++..+|.|++++.-...
T Consensus 61 ~~PVlVd-F~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdt-------------------------------------- 101 (150)
T KOG0910|consen 61 DVPVLVD-FHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDT-------------------------------------- 101 (150)
T ss_pred CCCEEEE-EecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcc--------------------------------------
Confidence 4688898 9999999999999999999999988877654310
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEEE--cCEEcCCCCC
Q 026422 131 KFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFV--NGFSLAGAGS 208 (238)
Q Consensus 131 ~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~v--nG~~~~~~~~ 208 (238)
| .+..++.+++|..+||+++ ||+......|
T Consensus 102 -----------------------------D-------------------~~~ela~~Y~I~avPtvlvfknGe~~d~~vG 133 (150)
T KOG0910|consen 102 -----------------------------D-------------------EHPELAEDYEISAVPTVLVFKNGEKVDRFVG 133 (150)
T ss_pred -----------------------------c-------------------cccchHhhcceeeeeEEEEEECCEEeeeecc
Confidence 0 0001246678999999986 9999987888
Q ss_pred CCCHhhHHHHHHHhhh
Q 026422 209 PLDYNGWRKVIDPLLS 224 (238)
Q Consensus 209 ~~~~e~~~~~i~~ll~ 224 (238)
..+.+.+.+.|++.+.
T Consensus 134 ~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 134 AVPKEQLRSLIKKFLK 149 (150)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999998875
No 24
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=4.6e-05 Score=64.19 Aligned_cols=88 Identities=19% Similarity=0.348 Sum_probs=71.5
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCCcchHHHHHHHHHHHhcCCchhHHHHHHHHHhhH
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQE 130 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q~ 130 (238)
..|++|+ |+.+.|+.|+.+.|.|+++..+|.|++.+...+
T Consensus 43 ~~PVlV~-fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN--------------------------------------- 82 (304)
T COG3118 43 EVPVLVD-FWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVN--------------------------------------- 82 (304)
T ss_pred CCCeEEE-ecCCCCchHHHHHHHHHHHHHHhCCceEEEEec---------------------------------------
Confidence 3588898 999999999999999999999999876655431
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEE--EcCEEcCCCCC
Q 026422 131 KFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFF--VNGFSLAGAGS 208 (238)
Q Consensus 131 ~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~--vnG~~~~~~~~ 208 (238)
+| .+ -..+..+||++.||++ ++|+.+.|+.|
T Consensus 83 ----------------------------~D-~~------------------p~vAaqfgiqsIPtV~af~dGqpVdgF~G 115 (304)
T COG3118 83 ----------------------------CD-AE------------------PMVAAQFGVQSIPTVYAFKDGQPVDGFQG 115 (304)
T ss_pred ----------------------------CC-cc------------------hhHHHHhCcCcCCeEEEeeCCcCccccCC
Confidence 11 00 0014567899999996 59999999999
Q ss_pred CCCHhhHHHHHHHhhhh
Q 026422 209 PLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 209 ~~~~e~~~~~i~~ll~~ 225 (238)
.++.+.++++|++++.+
T Consensus 116 ~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 116 AQPESQLRQFLDKVLPA 132 (304)
T ss_pred CCcHHHHHHHHHHhcCh
Confidence 99999999999998877
No 25
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.94 E-value=4.7e-05 Score=55.60 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=30.2
Q ss_pred HhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 185 SATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 185 a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
+.++||.++||+++ +|+.+....|..+.+++.++|+++
T Consensus 72 ~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 72 ARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred HHHcCCccCCEEEEEECCEEEEEecCCCCHHHHHHHHhcC
Confidence 56678999999985 888775556778899998888764
No 26
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.90 E-value=0.00035 Score=57.46 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=37.7
Q ss_pred HhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHhhhhcCC-CCCCCCC
Q 026422 185 SATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK-KREVPLH 235 (238)
Q Consensus 185 a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~ll~~~~~-~~~~~~~ 235 (238)
+.++||.|+||+++ +|+.+....|..+.+++.+.+...+.+..+ +-|.|+.
T Consensus 99 ~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~~~~~~p~p~~ 152 (224)
T PTZ00443 99 AKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKALGAPVPAPLS 152 (224)
T ss_pred HHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhhcCCCCCCchH
Confidence 45678999999976 888776556778999999999888865532 2335543
No 27
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.83 E-value=0.00046 Score=63.40 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=33.8
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhC-CcEEEEEEec
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYG-PHVSLVVHLL 92 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~-~~v~~~~~~~ 92 (238)
.++++|. |+-..||.|....|.+.++.+++. +++.|+....
T Consensus 56 GKpVvV~-FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~ 97 (521)
T PRK14018 56 DKPTLIK-FWASWCPLCLSELGETEKWAQDAKFSSANLITVAS 97 (521)
T ss_pred CCEEEEE-EEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEec
Confidence 4678888 999999999999999999999886 4577665543
No 28
>PRK10996 thioredoxin 2; Provisional
Probab=97.81 E-value=0.00015 Score=55.25 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=31.6
Q ss_pred HhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHhh
Q 026422 185 SATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL 223 (238)
Q Consensus 185 a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~ll 223 (238)
+.++||.|+||+++ ||+.+....|..+.+++.++|++++
T Consensus 99 ~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 99 SARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred HHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 45678999999987 8998765567788999999988753
No 29
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.77 E-value=0.00027 Score=49.80 Aligned_cols=32 Identities=22% Similarity=0.585 Sum_probs=27.8
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCc
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH 84 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~ 84 (238)
++.+|. |+...|++|+.+.|.+.++.+.++++
T Consensus 13 ~~vlv~-f~a~wC~~C~~~~~~~~~~~~~~~~~ 44 (96)
T cd02956 13 VPVVVD-FWAPRSPPSKELLPLLERLAEEYQGQ 44 (96)
T ss_pred CeEEEE-EECCCChHHHHHHHHHHHHHHHhCCc
Confidence 577887 99999999999999999998877654
No 30
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.73 E-value=0.00018 Score=51.53 Aligned_cols=34 Identities=21% Similarity=0.528 Sum_probs=28.2
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVS 86 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~ 86 (238)
++.+|. |+...|++|+.+.|.+.++.+++.++++
T Consensus 20 ~~v~v~-f~a~wC~~C~~~~p~~~~~~~~~~~~~~ 53 (104)
T cd03004 20 EPWLVD-FYAPWCGPCQALLPELRKAARALKGKVK 53 (104)
T ss_pred CeEEEE-EECCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 477887 9999999999999999999887754443
No 31
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.67 E-value=0.00058 Score=48.04 Aligned_cols=38 Identities=21% Similarity=0.484 Sum_probs=30.9
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
++.+|. |+...|++|..+.+.+.++.+++++++.|...
T Consensus 15 ~~vvi~-f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v 52 (101)
T TIGR01068 15 KPVLVD-FWAPWCGPCKMIAPILEELAKEYEGKVKFVKL 52 (101)
T ss_pred CcEEEE-EECCCCHHHHHhCHHHHHHHHHhcCCeEEEEE
Confidence 466776 99999999999999999998888766665544
No 32
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.51 E-value=0.00099 Score=47.03 Aligned_cols=30 Identities=17% Similarity=0.537 Sum_probs=24.9
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
++.+|. |++..|++|+.+.+.+.++.+.+.
T Consensus 14 ~~~~i~-f~~~~C~~c~~~~~~~~~~~~~~~ 43 (102)
T TIGR01126 14 KDVLVE-FYAPWCGHCKNLAPEYEKLAKELK 43 (102)
T ss_pred CcEEEE-EECCCCHHHHhhChHHHHHHHHhc
Confidence 466776 999999999999999988876544
No 33
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.35 E-value=0.001 Score=53.09 Aligned_cols=43 Identities=30% Similarity=0.541 Sum_probs=33.1
Q ss_pred HhcCCccccc-eEEE--cCEEcCCCCCCCCHhhHHHHHHHhhhhcC
Q 026422 185 SATRGVYATP-TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKG 227 (238)
Q Consensus 185 a~~~gV~gtP-t~~v--nG~~~~~~~~~~~~e~~~~~i~~ll~~~~ 227 (238)
+..+||.|+| ||+| +|+......|..+.+++.+.|+.++.+..
T Consensus 135 ~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 135 GLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYS 180 (185)
T ss_pred HHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 5678999999 5566 57766555677899999999999987643
No 34
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.32 E-value=0.0016 Score=53.23 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=30.8
Q ss_pred HHhcCCccccceEEE--cCEEcC-CCCCCCCHhhHHHHHHHhhh
Q 026422 184 FSATRGVYATPTFFV--NGFSLA-GAGSPLDYNGWRKVIDPLLS 224 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v--nG~~~~-~~~~~~~~e~~~~~i~~ll~ 224 (238)
.+.++||.++||+++ ||+.+. ...|..+.+++.++|+.++.
T Consensus 69 l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 69 EAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred HHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHH
Confidence 367789999999987 676642 34566778888888888864
No 35
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.19 E-value=0.0015 Score=46.35 Aligned_cols=28 Identities=25% Similarity=0.555 Sum_probs=24.2
Q ss_pred eEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 54 IIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 54 ~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
.+|. |+...||+|+.+.|.+.++.+++.
T Consensus 19 ~lv~-f~a~wC~~C~~~~p~~~~l~~~~~ 46 (101)
T cd02994 19 WMIE-FYAPWCPACQQLQPEWEEFADWSD 46 (101)
T ss_pred EEEE-EECCCCHHHHHHhHHHHHHHHhhc
Confidence 5687 999999999999999999877654
No 36
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.13 E-value=0.019 Score=44.76 Aligned_cols=39 Identities=13% Similarity=0.437 Sum_probs=31.5
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCc-EEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH-VSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~-v~~~~~ 90 (238)
+++++|. |+...||+|....+.+.++.++++++ +++...
T Consensus 61 ~k~~~l~-f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i 100 (173)
T PRK03147 61 GKGVFLN-FWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAV 100 (173)
T ss_pred CCEEEEE-EECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 4577787 88999999999999999999998743 665554
No 37
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.05 E-value=0.00047 Score=51.81 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=40.4
Q ss_pred HHHHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHhhhhcC
Q 026422 181 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKG 227 (238)
Q Consensus 181 ~~~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~ll~~~~ 227 (238)
+..++.++||.|+||+++ ||+++....|..+++++.+.|+++++...
T Consensus 80 ~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 80 SEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred CHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 456789999999999987 99998766788999999999999987653
No 38
>PTZ00102 disulphide isomerase; Provisional
Probab=97.00 E-value=0.016 Score=52.82 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=32.6
Q ss_pred HHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHhhhh
Q 026422 184 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
.+.++||.|+||+++ ||+.+ ...|..+.+++.+++++.+..
T Consensus 98 l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 98 LAQEFGVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGP 140 (477)
T ss_pred HHHhcCCCcccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCC
Confidence 456789999999976 67665 456789999999999888754
No 39
>PTZ00062 glutaredoxin; Provisional
Probab=96.94 E-value=0.025 Score=45.87 Aligned_cols=36 Identities=6% Similarity=0.122 Sum_probs=30.0
Q ss_pred ceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 53 ~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
..++. |....||.|+.+.+.+.++.++|+ +++|...
T Consensus 19 ~~vl~-f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V 54 (204)
T PTZ00062 19 KLVLY-VKSSKEPEYEQLMDVCNALVEDFP-SLEFYVV 54 (204)
T ss_pred cEEEE-EeCCCCcchHHHHHHHHHHHHHCC-CcEEEEE
Confidence 45565 889999999999999999999998 5666654
No 40
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=96.92 E-value=0.0053 Score=48.36 Aligned_cols=41 Identities=34% Similarity=0.631 Sum_probs=31.8
Q ss_pred HhcCCccccc-eEEE--cCEEcCCCCCCCCHhhHHHHHHHhhhh
Q 026422 185 SATRGVYATP-TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 185 a~~~gV~gtP-t~~v--nG~~~~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
++.+|+.|+| +|+| ||+.+....|..+.+++.+.|+++++|
T Consensus 130 ~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~~ 173 (173)
T TIGR00385 130 GLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAMEK 173 (173)
T ss_pred HHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhhC
Confidence 5678999999 5667 588765445678899999999988854
No 41
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.89 E-value=0.0014 Score=48.64 Aligned_cols=40 Identities=10% Similarity=0.167 Sum_probs=34.8
Q ss_pred HHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHhh
Q 026422 183 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL 223 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~ll 223 (238)
.++.++||.|.||+++ ||+.+. ..|..+.+.+.++|++++
T Consensus 78 ~La~~~~I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 78 KVAKKLGLDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHHHcCCccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 3478999999999976 999876 788999999999998875
No 42
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.72 E-value=0.0067 Score=46.90 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=31.0
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCC-cEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~ 90 (238)
++.+|+ |+...||+|+.+.|.+.++.+++.+ +++|...
T Consensus 48 ~~vvV~-Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~V 86 (152)
T cd02962 48 VTWLVE-FFTTWSPECVNFAPVFAELSLKYNNNNLKFGKI 86 (152)
T ss_pred CEEEEE-EECCCCHHHHHHHHHHHHHHHHcccCCeEEEEE
Confidence 467787 8999999999999999999998874 4655544
No 43
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.71 E-value=0.0035 Score=43.86 Aligned_cols=39 Identities=23% Similarity=0.549 Sum_probs=33.6
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhC--CcEEEEEEe
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG--PHVSLVVHL 91 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~--~~v~~~~~~ 91 (238)
++++|. |++..|+.|....|.+.++.++|+ +++++++..
T Consensus 2 K~~ll~-fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs 42 (95)
T PF13905_consen 2 KPVLLY-FWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVS 42 (95)
T ss_dssp SEEEEE-EE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred CEEEEE-EECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 567787 999999999999999999999999 778888774
No 44
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.56 E-value=0.0049 Score=43.12 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=32.3
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.++.|.+|.+..||+|....+.++++...++ ++++..+
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~v 49 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMI 49 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEE
Confidence 4666888999999999999999999998876 6777665
No 45
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.44 E-value=0.007 Score=44.39 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=33.3
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
++++|+ |+...||.|+.+.|.++++..++++.++|...
T Consensus 15 ~~vVV~-F~A~WCgpCk~m~P~le~la~~~~~~v~f~kV 52 (114)
T cd02954 15 KVVVIR-FGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLV 52 (114)
T ss_pred CEEEEE-EECCCChhHHHHHHHHHHHHHHccCceEEEEE
Confidence 578888 99999999999999999999999977766554
No 46
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.43 E-value=0.035 Score=55.73 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=70.1
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCc-EEEEEEeccccCCcchHHHHHHHHHHHhcCCchhHHHHHHHHHhh
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH-VSLVVHLLPLPYHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQ 129 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~-v~~~~~~~pl~~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~q 129 (238)
.++++|. |+-..||.|+...|.++++.++|+++ +.++-...+- +.... .
T Consensus 420 GK~vll~-FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~-~D~~~--------------~-------------- 469 (1057)
T PLN02919 420 GKVVILD-FWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAK-FDNEK--------------D-------------- 469 (1057)
T ss_pred CCEEEEE-EECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccc-ccccc--------------c--------------
Confidence 4678888 88889999999999999999999754 4444332110 10000 0
Q ss_pred HhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceEEE---cCEEcCCC
Q 026422 130 EKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFV---NGFSLAGA 206 (238)
Q Consensus 130 ~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~~v---nG~~~~~~ 206 (238)
..++. ++. ++.|+. ... +.+. +.+.+..+||.|+|+++| ||+.+...
T Consensus 470 ------------~~~~~----~~~-~~~~i~-~pv----v~D~--------~~~~~~~~~V~~iPt~ilid~~G~iv~~~ 519 (1057)
T PLN02919 470 ------------LEAIR----NAV-LRYNIS-HPV----VNDG--------DMYLWRELGVSSWPTFAVVSPNGKLIAQL 519 (1057)
T ss_pred ------------HHHHH----HHH-HHhCCC-ccE----EECC--------chHHHHhcCCCccceEEEECCCCeEEEEE
Confidence 00000 111 123443 110 1111 112456789999999975 68876555
Q ss_pred CCCCCHhhHHHHHHHhhh
Q 026422 207 GSPLDYNGWRKVIDPLLS 224 (238)
Q Consensus 207 ~~~~~~e~~~~~i~~ll~ 224 (238)
.|....+++.++|+.++.
T Consensus 520 ~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 520 SGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred ecccCHHHHHHHHHHHHH
Confidence 667888999999988876
No 47
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=96.40 E-value=0.0078 Score=42.72 Aligned_cols=38 Identities=13% Similarity=0.377 Sum_probs=31.8
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
++.+|. |+...|++|+.+.|.+.++.++++++++|...
T Consensus 19 ~~~~v~-f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~v 56 (101)
T cd03003 19 EIWFVN-FYSPRCSHCHDLAPTWREFAKEMDGVIRIGAV 56 (101)
T ss_pred CeEEEE-EECCCChHHHHhHHHHHHHHHHhcCceEEEEE
Confidence 567777 99999999999999999999999876655433
No 48
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.36 E-value=0.003 Score=42.71 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=23.8
Q ss_pred HhcCCccccceEEEcCEEcCCCCC-CCCHhhHHHHHH
Q 026422 185 SATRGVYATPTFFVNGFSLAGAGS-PLDYNGWRKVID 220 (238)
Q Consensus 185 a~~~gV~gtPt~~vnG~~~~~~~~-~~~~e~~~~~i~ 220 (238)
..++||.++|+++|||+... .| ..+.+++..+|+
T Consensus 42 ~~~ygv~~vPalvIng~~~~--~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 42 IEKYGVMSVPALVINGKVVF--VGRVPSKEELKELLE 76 (76)
T ss_dssp HHHTT-SSSSEEEETTEEEE--ESS--HHHHHHHHHH
T ss_pred HHHcCCCCCCEEEECCEEEE--EecCCCHHHHHHHhC
Confidence 37899999999999999753 23 466777777663
No 49
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.21 E-value=0.0074 Score=40.79 Aligned_cols=32 Identities=16% Similarity=0.350 Sum_probs=27.0
Q ss_pred EEEEeeCCCCchhhhhchhHHHHHHHhCCcEEE
Q 026422 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSL 87 (238)
Q Consensus 55 ~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~ 87 (238)
.|+ |+...||+|..+.|.++++.++++.++++
T Consensus 2 ~i~-~~a~~C~~C~~~~~~~~~~~~e~~~~~~~ 33 (76)
T TIGR00412 2 KIQ-IYGTGCANCQMTEKNVKKAVEELGIDAEF 33 (76)
T ss_pred EEE-EECCCCcCHHHHHHHHHHHHHHcCCCeEE
Confidence 477 55599999999999999999999866554
No 50
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0066 Score=46.56 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=36.8
Q ss_pred HHHhcCCccccceEEE---cCEEcCCCCCCCCHhhHHHHHHHhhhhcCC
Q 026422 183 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK 228 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v---nG~~~~~~~~~~~~e~~~~~i~~ll~~~~~ 228 (238)
.+|+.++|+|||||+. +|+.+.-..|+.+.+++..++.+...+.-+
T Consensus 106 ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~yk 154 (182)
T COG2143 106 ELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYK 154 (182)
T ss_pred HHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 4588999999999987 567665567889999999998887665443
No 51
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.09 E-value=0.015 Score=41.02 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=30.9
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
+++++. |+...|++|+.+.+.+.++.+++++++.+...
T Consensus 14 ~~vlv~-f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~i 51 (97)
T cd02949 14 RLILVL-YTSPTCGPCRTLKPILNKVIDEFDGAVHFVEI 51 (97)
T ss_pred CeEEEE-EECCCChhHHHHHHHHHHHHHHhCCceEEEEE
Confidence 456665 99999999999999999999988866655443
No 52
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=96.09 E-value=0.011 Score=41.51 Aligned_cols=39 Identities=21% Similarity=0.514 Sum_probs=32.1
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.++.+|. |+...|++|..+.|.+.++.+++++++.|...
T Consensus 17 ~~~vvv~-f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~v 55 (103)
T PF00085_consen 17 DKPVVVY-FYAPWCPPCKAFKPILEKLAKEYKDNVKFAKV 55 (103)
T ss_dssp SSEEEEE-EESTTSHHHHHHHHHHHHHHHHTTTTSEEEEE
T ss_pred CCCEEEE-EeCCCCCccccccceecccccccccccccchh
Confidence 3578887 88899999999999999999999875555443
No 53
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=96.06 E-value=0.015 Score=41.60 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=30.5
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVV 89 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~ 89 (238)
.+.+|. |+...|++|+.+.|.+.++.+++.+++.+..
T Consensus 19 ~~~lv~-f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~ 55 (109)
T cd03002 19 YTTLVE-FYAPWCGHCKNLKPEYAKAAKELDGLVQVAA 55 (109)
T ss_pred CeEEEE-EECCCCHHHHhhChHHHHHHHHhcCCceEEE
Confidence 467787 9999999999999999999988876554443
No 54
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.05 E-value=0.012 Score=43.65 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=29.4
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
+..+|. |+-..||+|+.+.|.++++.++. ++.+.+..
T Consensus 24 ~~~iv~-f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vd 60 (122)
T TIGR01295 24 ETATFF-IGRKTCPYCRKFSGTLSGVVAQT--KAPIYYID 60 (122)
T ss_pred CcEEEE-EECCCChhHHHHhHHHHHHHHhc--CCcEEEEE
Confidence 456776 99999999999999999999873 45555543
No 55
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.00 E-value=0.015 Score=43.08 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=32.7
Q ss_pred CceEEEEeeC-------CCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 52 DAIIIEAFFD-------PVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 52 ~~~~ve~f~D-------~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
++++|. |+- ..||.|+.+.|.++++.++++++++|+...
T Consensus 22 ~~vvV~-F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vd 67 (119)
T cd02952 22 KPIFIL-FYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCD 67 (119)
T ss_pred CeEEEE-EEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEE
Confidence 578888 666 999999999999999999998777776553
No 56
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=95.92 E-value=0.018 Score=42.16 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=32.2
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.+..+|+ |+-..|++|+.+.|.++++.+++.+++.|.-.
T Consensus 29 ~~~vlV~-FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~V 67 (113)
T cd03006 29 AEVSLVM-YYAPWDAQSQAARQEFEQVAQKLSDQVLFVAI 67 (113)
T ss_pred CCEEEEE-EECCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3577787 99999999999999999999998876554433
No 57
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.91 E-value=0.016 Score=37.73 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=27.7
Q ss_pred EEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 55 ~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.|.+|+...||+|..+.+.++++...++ ++.+...
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~i 36 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMI 36 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEE
Confidence 3567999999999999999999877654 5666554
No 58
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=95.90 E-value=0.019 Score=41.87 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=32.1
Q ss_pred CceEEEEeeCC-CCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDP-VCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~-~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.+.+|.++.++ .||.|..+.|.++++.++|++++.|...
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kV 67 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVV 67 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEE
Confidence 36777756666 8999999999999999999988776554
No 59
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.90 E-value=0.014 Score=42.20 Aligned_cols=38 Identities=16% Similarity=0.457 Sum_probs=31.5
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVV 89 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~ 89 (238)
+++++|. |+...||+|....|.+.++.+++.+++.+..
T Consensus 21 gk~vvl~-F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~ 58 (114)
T cd02967 21 GRPTLLF-FLSPTCPVCKKLLPVIRSIARAEADWLDVVL 58 (114)
T ss_pred CCeEEEE-EECCCCcchHhHhHHHHHHHHHhcCCcEEEE
Confidence 4678887 8899999999999999998888876666653
No 60
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.88 E-value=0.0068 Score=40.98 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=24.0
Q ss_pred HhcCCccccceEEEcCEEcCCCCCC-CCHhhHHHHH
Q 026422 185 SATRGVYATPTFFVNGFSLAGAGSP-LDYNGWRKVI 219 (238)
Q Consensus 185 a~~~gV~gtPt~~vnG~~~~~~~~~-~~~e~~~~~i 219 (238)
+.++|+.++||+++||+.+. .|. .+.+++.++|
T Consensus 42 a~~~~v~~vPti~i~G~~~~--~G~~~~~~~l~~~l 75 (76)
T TIGR00412 42 ILEAGVTATPGVAVDGELVI--MGKIPSKEEIKEIL 75 (76)
T ss_pred HHHcCCCcCCEEEECCEEEE--EeccCCHHHHHHHh
Confidence 57799999999999998873 333 3446666554
No 61
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.018 Score=41.74 Aligned_cols=38 Identities=13% Similarity=0.422 Sum_probs=33.4
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
++.++|+ |+...||-|+.+.|.+.++..+|++ +.|.-.
T Consensus 21 ~kliVvd-F~a~wCgPCk~i~P~~~~La~~y~~-v~Flkv 58 (106)
T KOG0907|consen 21 DKLVVVD-FYATWCGPCKAIAPKFEKLAEKYPD-VVFLKV 58 (106)
T ss_pred CCeEEEE-EECCCCcchhhhhhHHHHHHHHCCC-CEEEEE
Confidence 3678898 9999999999999999999999996 666654
No 62
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.84 E-value=0.11 Score=48.71 Aligned_cols=38 Identities=11% Similarity=0.033 Sum_probs=29.7
Q ss_pred ceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 53 ~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
++.+.+|.|..|++|......++++.. ..++|++..+.
T Consensus 367 ~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~ 404 (555)
T TIGR03143 367 PVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVN 404 (555)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEec
Confidence 555667999999999999888888774 45688887654
No 63
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=95.79 E-value=0.17 Score=41.51 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=30.3
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
++-+||.|++=.|..|=-....+.++.++ ++-+.+.||
T Consensus 41 ~~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyh 78 (261)
T COG5429 41 PLGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYH 78 (261)
T ss_pred CceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEe
Confidence 57789999999999999999999888775 434555554
No 64
>PHA02278 thioredoxin-like protein
Probab=95.77 E-value=0.021 Score=41.08 Aligned_cols=38 Identities=5% Similarity=0.007 Sum_probs=31.2
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.+++|+ |+-..|+.|+.+.|.++++.+++.++++|...
T Consensus 15 ~~vvV~-F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~v 52 (103)
T PHA02278 15 KDVIVM-ITQDNCGKCEILKSVIPMFQESGDIKKPILTL 52 (103)
T ss_pred CcEEEE-EECCCCHHHHhHHHHHHHHHhhhcCCceEEEE
Confidence 578888 99999999999999999998876555555443
No 65
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.71 E-value=0.011 Score=41.28 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=24.2
Q ss_pred HHHhcCCccccceEEEcCEEcCCCCCCCCHhhH
Q 026422 183 KFSATRGVYATPTFFVNGFSLAGAGSPLDYNGW 215 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~ 215 (238)
..+.++||.++|||++||+.+. .|..+.+++
T Consensus 56 e~a~~~~V~~vPt~vidG~~~~--~G~~~~~e~ 86 (89)
T cd03026 56 DEVEERGIMSVPAIFLNGELFG--FGRMTLEEI 86 (89)
T ss_pred HHHHHcCCccCCEEEECCEEEE--eCCCCHHHH
Confidence 4578999999999999999875 345566654
No 66
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.70 E-value=0.026 Score=40.23 Aligned_cols=32 Identities=9% Similarity=0.297 Sum_probs=28.1
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCC
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP 83 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~ 83 (238)
+++.+|. |+...||+|+.+.|.+.++.+++++
T Consensus 17 ~~~vvv~-F~a~wC~~Ck~~~p~l~~~~~~~~~ 48 (102)
T cd02948 17 KGLTVVD-VYQEWCGPCKAVVSLFKKIKNELGD 48 (102)
T ss_pred CCeEEEE-EECCcCHhHHHHhHHHHHHHHHcCC
Confidence 3577787 9999999999999999999988874
No 67
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.56 E-value=0.24 Score=41.15 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=31.0
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCc-EEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH-VSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~-v~~~~~ 90 (238)
+++.+|. |+...||.|....|.+.++.++|.++ +.++-.
T Consensus 99 GK~vvl~-FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV 138 (236)
T PLN02399 99 GKVLLIV-NVASKCGLTSSNYSELSHLYEKYKTQGFEILAF 138 (236)
T ss_pred CCeEEEE-EEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3567776 88999999999999999999999743 555443
No 68
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=95.51 E-value=0.028 Score=40.19 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=30.7
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVV 89 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~ 89 (238)
.++++|+ |+...|+.|+.+.|.+.++.++++ ++.|..
T Consensus 15 ~k~vvv~-F~a~wC~~C~~~~p~l~~la~~~~-~v~~~~ 51 (103)
T cd02985 15 GRLVVLE-FALKHSGPSVKIYPTMVKLSRTCN-DVVFLL 51 (103)
T ss_pred CCEEEEE-EECCCCHhHHHHhHHHHHHHHHCC-CCEEEE
Confidence 3578888 999999999999999999999984 555443
No 69
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.51 E-value=0.028 Score=41.04 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=30.7
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.+.+|. |+...|+.|+.+.|.++++.++++ +++|...
T Consensus 23 ~~vvV~-f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~V 59 (113)
T cd02989 23 ERVVCH-FYHPEFFRCKIMDKHLEILAKKHL-ETKFIKV 59 (113)
T ss_pred CcEEEE-EECCCCccHHHHHHHHHHHHHHcC-CCEEEEE
Confidence 467787 999999999999999999999987 4655433
No 70
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=95.43 E-value=0.039 Score=38.91 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=30.1
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVV 89 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~ 89 (238)
++.+|. |+...|++|..+.|.+.++.+++.+++.+..
T Consensus 19 ~~vlv~-f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~ 55 (103)
T cd03001 19 DVWLVE-FYAPWCGHCKNLAPEWKKAAKALKGIVKVGA 55 (103)
T ss_pred CcEEEE-EECCCCHHHHHHhHHHHHHHHHhcCCceEEE
Confidence 456776 8899999999999999999988876655544
No 71
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.38 E-value=0.077 Score=47.87 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=31.7
Q ss_pred HHhcCCccccceEEE--cCEE-cCCCCCCCCHhhHHHHHHHhhhh
Q 026422 184 FSATRGVYATPTFFV--NGFS-LAGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v--nG~~-~~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
.+.++||.|+||+++ +|+. +....|..+.+++.++|++.+..
T Consensus 67 l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 67 LAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGP 111 (462)
T ss_pred HHHhCCCccccEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCC
Confidence 356788999999975 6776 44456778899998888887653
No 72
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.34 E-value=0.028 Score=41.47 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHhcCCccccceEEE---c-CEEcCCCCCCCCHhhHHHHHHHhhhhc
Q 026422 183 KFSATRGVYATPTFFV---N-GFSLAGAGSPLDYNGWRKVIDPLLSEK 226 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v---n-G~~~~~~~~~~~~e~~~~~i~~ll~~~ 226 (238)
..+.++||.++||+++ + |+.+....|..+.+++.+.|+.++.+.
T Consensus 75 ~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 75 ELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred HHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence 3467889999999875 3 566655566788999999999988764
No 73
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=95.33 E-value=0.021 Score=40.65 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=27.9
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
+++.+|. |+...||+|+.+.|.+.++.++++
T Consensus 18 g~~vlV~-F~a~WC~~C~~~~p~l~~la~~~~ 48 (100)
T cd02999 18 EDYTAVL-FYASWCPFSASFRPHFNALSSMFP 48 (100)
T ss_pred CCEEEEE-EECCCCHHHHhHhHHHHHHHHHhc
Confidence 3678888 999999999999999999998886
No 74
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.18 E-value=0.037 Score=40.23 Aligned_cols=35 Identities=17% Similarity=0.416 Sum_probs=29.7
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLV 88 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~ 88 (238)
.+.+|. |+...|+.|+.+.|.++++.++|+ +++|.
T Consensus 25 ~~vvv~-F~a~~c~~C~~l~~~l~~la~~~~-~v~f~ 59 (113)
T cd02957 25 TRVVVH-FYEPGFPRCKILDSHLEELAAKYP-ETKFV 59 (113)
T ss_pred CEEEEE-EeCCCCCcHHHHHHHHHHHHHHCC-CcEEE
Confidence 467777 999999999999999999999987 45444
No 75
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.17 E-value=0.043 Score=38.77 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=33.3
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.+.++. |.+..|+.|..+.+.++++.++|.++++|.+.
T Consensus 13 ~~~~~~-f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~v 50 (103)
T cd02982 13 KPLLVL-FYNKDDSESEELRERFKEVAKKFKGKLLFVVV 50 (103)
T ss_pred CCEEEE-EEcCChhhHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 456665 99999999999999999999999888888876
No 76
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.64 Score=38.10 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=86.0
Q ss_pred CCceEEEEeeCCCCchhhhhc-hhHHHHHHH-hCCcEEEEEEeccccCC---cc----------h-HHHHHHHHHHHhc-
Q 026422 51 SDAIIIEAFFDPVCPDSRDAW-PPLKQALQH-YGPHVSLVVHLLPLPYH---DN----------A-YATSRALHIVNRT- 113 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~-~~l~~~~~~-~~~~v~~~~~~~pl~~~---~~----------s-~~aa~a~~~a~~~- 113 (238)
++++.|++|.-=.||+|.+|. ..+.++... ..+.+++.++ |+.-. .+ . -..-+.=.|+-+.
T Consensus 38 ~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lv--PfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~l 115 (220)
T KOG3160|consen 38 APKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLV--PFGNAQCRNDGGTFTCQHGEEECKLNKLQACVIDTL 115 (220)
T ss_pred CCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEE--ccCCceeecCceEEEecCCHHHHhhhHHHHHHHHhh
Confidence 457889999999999999885 455565555 3567778777 44210 11 0 0111111222211
Q ss_pred -CCchhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHh--cCCc
Q 026422 114 -NSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSA--TRGV 190 (238)
Q Consensus 114 -~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~--~~gV 190 (238)
+...+..|..=+ |. ..+ +++..+-+ +.+|.+ ...+.+|.++....+.+...-+... .-++
T Consensus 116 ~~~~~~l~~i~C~---~~------~~~------~~~~~~C~-~~~~~~-~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~ 178 (220)
T KOG3160|consen 116 PDQSDQLPFIRCI---QG------KQK------LSEAEDCL-EKYGLN-EKKIRECANSRLGAKLLLKYAQETAALAPPH 178 (220)
T ss_pred hchHhhhceehhh---hc------ccc------hhHHHHHH-hhcCCC-HHHHHHHhcCchHHHHHHHHHHhhcccCCCC
Confidence 111222332221 11 001 12223333 468887 7889999999887777665554443 5579
Q ss_pred cccceEEEcCEEcCCCCCCCCHhhHHHHHHHhhhh
Q 026422 191 YATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 191 ~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
.-+|.+.|||+.... ...++...|-.....
T Consensus 179 ~~VPwi~vNg~~~~~-----~~~~l~~~~C~~~~~ 208 (220)
T KOG3160|consen 179 PWVPWILVNGQPLQD-----AEQDLVTLLCEAYKG 208 (220)
T ss_pred CCcCeEEECCcchHH-----HHHHHHHHHHHHHhh
Confidence 999999999999864 244455555444433
No 77
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=95.10 E-value=0.059 Score=38.85 Aligned_cols=37 Identities=11% Similarity=0.331 Sum_probs=29.9
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCc-EEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH-VSLV 88 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~-v~~~ 88 (238)
.++.+|. |+...||+|..+.|.+.++.+++.++ +.+.
T Consensus 21 ~k~vlv~-f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~ 58 (109)
T cd02993 21 NQSTLVV-LYAPWCPFCQAMEASYEELAEKLAGSNVKVA 58 (109)
T ss_pred CCCEEEE-EECCCCHHHHHHhHHHHHHHHHhccCCeEEE
Confidence 3577787 99999999999999999999888753 4443
No 78
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.10 E-value=0.024 Score=39.82 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=33.0
Q ss_pred HHHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHH
Q 026422 182 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 182 ~~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
..++.+++|.++||+++ ||+......|..+.+++.++|++
T Consensus 61 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 61 KELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp HHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred chhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 34679999999999986 88887666677899999988875
No 79
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=95.04 E-value=0.065 Score=37.69 Aligned_cols=31 Identities=16% Similarity=0.460 Sum_probs=27.4
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCC
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP 83 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~ 83 (238)
++.+|. |+...|++|..+.|.+.++.+.+.+
T Consensus 19 ~~~~v~-f~~~~C~~C~~~~~~~~~~~~~~~~ 49 (104)
T cd02995 19 KDVLVE-FYAPWCGHCKALAPIYEELAEKLKG 49 (104)
T ss_pred CcEEEE-EECCCCHHHHHHhhHHHHHHHHhcC
Confidence 467776 9999999999999999999998875
No 80
>PTZ00056 glutathione peroxidase; Provisional
Probab=94.98 E-value=0.23 Score=40.12 Aligned_cols=39 Identities=8% Similarity=0.241 Sum_probs=30.8
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCC-cEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~ 90 (238)
+++.+|. |+.-.||.|..-.|.+.++.++|.+ .+.++-.
T Consensus 39 Gkvvlv~-fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv 78 (199)
T PTZ00056 39 NKVLMIT-NSASKCGLTKKHVDQMNRLHSVFNPLGLEILAF 78 (199)
T ss_pred CCEEEEE-EECCCCCChHHHHHHHHHHHHHHhcCceEEEEe
Confidence 3577776 7788999999999999999999874 3555443
No 81
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=94.88 E-value=0.066 Score=40.83 Aligned_cols=39 Identities=8% Similarity=-0.019 Sum_probs=33.6
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.++++|+ |+.-.||.|+.+.|.++++.+++++.+.|...
T Consensus 23 ~~lVVvd-F~A~WCgpCk~m~p~l~~la~~~~~~~~~~kV 61 (142)
T PLN00410 23 ERLVVIR-FGHDWDETCMQMDEVLASVAETIKNFAVIYLV 61 (142)
T ss_pred CCEEEEE-EECCCChhHHHHHHHHHHHHHHcCCceEEEEE
Confidence 3578898 99999999999999999999999876666554
No 82
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=94.84 E-value=0.086 Score=42.67 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=25.2
Q ss_pred EEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 55 ~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
+||.|++=.|+.|=-....|.++..+ ++-|-+.||
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafH 35 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR-PDVIALAFH 35 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEec
Confidence 58999999999999999999999888 333444443
No 83
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=94.82 E-value=0.046 Score=38.86 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=27.7
Q ss_pred CceEEEEeeCCCCchhhhhchhH---HHHHHHhCCcEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPL---KQALQHYGPHVSLVV 89 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l---~~~~~~~~~~v~~~~ 89 (238)
++++|. |+...|++|+.+.+.+ .++.+.+.+++.+..
T Consensus 12 k~vlv~-f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (104)
T cd02953 12 KPVFVD-FTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLR 51 (104)
T ss_pred CeEEEE-EEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEE
Confidence 577787 9999999999999877 467766765444433
No 84
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=94.67 E-value=0.032 Score=40.68 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=28.1
Q ss_pred HHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHH
Q 026422 183 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWR 216 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~ 216 (238)
..+.++||.|+||+++ ||+.+....|..+.+++.
T Consensus 74 ~la~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 74 ALAARFGVLRTPALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred HHHHHcCCCcCCEEEEEECCEEEEEEeCccCHHHHh
Confidence 5689999999999986 999987666777777764
No 85
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=94.64 E-value=0.09 Score=36.29 Aligned_cols=38 Identities=16% Similarity=0.410 Sum_probs=29.4
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHh--CCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHY--GPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~--~~~v~~~~~ 90 (238)
++.+|. |++..|++|..+.+.+.++.+.+ .+++.+...
T Consensus 16 ~~~~v~-f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v 55 (101)
T cd02961 16 KDVLVE-FYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKV 55 (101)
T ss_pred CcEEEE-EECCCCHHHHhhhHHHHHHHHHhccCCceEEEEe
Confidence 366776 89999999999999999998887 445554433
No 86
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.62 E-value=0.53 Score=43.60 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=30.2
Q ss_pred HHHHHhcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHH
Q 026422 181 SFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 181 ~~~~a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
.-+++.+++|.++|++++||+.+. .|..+.+++.+.+..
T Consensus 158 ~~~~~~~~~v~~VP~~~i~~~~~~--~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 158 FQDEVEARNIMAVPTVFLNGEEFG--QGRMTLEEILAKLDT 196 (517)
T ss_pred CHhHHHhcCCcccCEEEECCcEEE--ecCCCHHHHHHHHhc
Confidence 345678999999999999998774 456778877766654
No 87
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=94.55 E-value=0.086 Score=37.07 Aligned_cols=30 Identities=17% Similarity=0.566 Sum_probs=26.4
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
++.+|. |+...||+|..+.|.+.++.+.+.
T Consensus 19 ~~~~v~-f~a~~C~~C~~~~~~~~~~~~~~~ 48 (105)
T cd02998 19 KDVLVE-FYAPWCGHCKNLAPEYEKLAAVFA 48 (105)
T ss_pred CcEEEE-EECCCCHHHHhhChHHHHHHHHhC
Confidence 467777 889999999999999999998876
No 88
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.54 E-value=0.12 Score=47.80 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=31.0
Q ss_pred HHHHhcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 182 FKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 182 ~~~a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
-+++.+++|.++|+++|||+.+. .|..+.+++.+.+...
T Consensus 160 ~~~~~~~~v~~VP~~~i~~~~~~--~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 160 QDEVEALGIQGVPAVFLNGEEFH--NGRMDLAELLEKLEET 198 (515)
T ss_pred HHHHHhcCCcccCEEEECCcEEE--ecCCCHHHHHHHHhhc
Confidence 45679999999999999998774 4567888887766554
No 89
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=94.51 E-value=0.093 Score=36.83 Aligned_cols=30 Identities=20% Similarity=0.497 Sum_probs=26.7
Q ss_pred ceEEEEeeCCCCchhhhhchhHHHHHHHhCC
Q 026422 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGP 83 (238)
Q Consensus 53 ~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~ 83 (238)
+.+|. |+...|++|..+.|.+.++.+++.+
T Consensus 18 ~~lv~-f~a~wC~~C~~~~p~~~~~~~~~~~ 47 (102)
T cd03005 18 NHFVK-FFAPWCGHCKRLAPTWEQLAKKFNN 47 (102)
T ss_pred CEEEE-EECCCCHHHHHhCHHHHHHHHHHhc
Confidence 47777 9999999999999999999998865
No 90
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=94.50 E-value=0.039 Score=39.32 Aligned_cols=38 Identities=24% Similarity=0.127 Sum_probs=28.7
Q ss_pred HHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 184 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
.+++++|.++|||++ ||+.+....| .+.+.+.+.|+.+
T Consensus 63 ~~~~~~v~~~Pt~~~~~~g~~~~~~~G-~~~~~~~~~i~~~ 102 (102)
T cd02948 63 TLKRYRGKCEPTFLFYKNGELVAVIRG-ANAPLLNKTITEL 102 (102)
T ss_pred HHHHcCCCcCcEEEEEECCEEEEEEec-CChHHHHHHHhhC
Confidence 468999999999987 8887654444 4778888887753
No 91
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=94.49 E-value=0.24 Score=38.31 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=26.4
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
+..+|. |+...||+|+...|.+.++.++|+
T Consensus 51 ~~~lvn-FWAsWCppCr~e~P~L~~l~~~~~ 80 (153)
T TIGR02738 51 DYALVF-FYQSTCPYCHQFAPVLKRFSQQFG 80 (153)
T ss_pred CCEEEE-EECCCChhHHHHHHHHHHHHHHcC
Confidence 456777 888899999999999999999885
No 92
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=94.30 E-value=0.13 Score=36.56 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=26.5
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
.+.+|. |+...||+|+.+.|.+.++.+++.
T Consensus 16 ~~vlv~-f~a~wC~~C~~~~p~l~~l~~~~~ 45 (104)
T cd03000 16 DIWLVD-FYAPWCGHCKKLEPVWNEVGAELK 45 (104)
T ss_pred CeEEEE-EECCCCHHHHhhChHHHHHHHHHH
Confidence 467777 999999999999999999988874
No 93
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.29 E-value=0.062 Score=39.62 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=26.4
Q ss_pred CceEEEEeeCCCCchhhhhchhHH---HHHHHhCCcEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLK---QALQHYGPHVSLVV 89 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~---~~~~~~~~~v~~~~ 89 (238)
++++|. |+...||+|..+.+.+. .+.+.+.+++.+..
T Consensus 15 k~vlv~-f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (125)
T cd02951 15 KPLLLL-FSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVY 54 (125)
T ss_pred CcEEEE-EeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEE
Confidence 678887 99999999999998774 45445544454433
No 94
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=94.25 E-value=0.12 Score=37.91 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=33.0
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.++++|+ |+...||.|+.+.|.+.++..+|++.+.|...
T Consensus 14 ~klVVVd-F~a~WC~pCk~mdp~l~ela~~~~~~~~f~kV 52 (114)
T cd02986 14 EKVLVLR-FGRDEDAVCLQLDDILSKTSHDLSKMASIYLV 52 (114)
T ss_pred CCEEEEE-EeCCCChhHHHHHHHHHHHHHHccCceEEEEE
Confidence 4688898 99999999999999999999999854555544
No 95
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=94.18 E-value=0.13 Score=36.20 Aligned_cols=30 Identities=17% Similarity=0.491 Sum_probs=26.4
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
++.+|. |+...||+|+.+.|.+.++.+.+.
T Consensus 18 ~~~~v~-f~a~wC~~C~~~~~~~~~~~~~~~ 47 (104)
T cd02997 18 KHVLVM-FYAPWCGHCKKMKPEFTKAATELK 47 (104)
T ss_pred CCEEEE-EECCCCHHHHHhCHHHHHHHHHHh
Confidence 467776 999999999999999999988776
No 96
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=94.15 E-value=0.067 Score=40.44 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=31.7
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCC-cEEEEEEe
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVHL 91 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~~ 91 (238)
.++++|.+|....||.|....|.+.++.++|.+ .+.++...
T Consensus 28 gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~ 69 (146)
T PF08534_consen 28 GKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVS 69 (146)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEec
Confidence 467888845555999999999999999888653 47777663
No 97
>PHA02278 thioredoxin-like protein
Probab=94.10 E-value=0.051 Score=39.08 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=26.7
Q ss_pred HHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHH
Q 026422 184 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRK 217 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~ 217 (238)
.+.+++|.|+|||++ ||+.+....|..+.+++.+
T Consensus 64 l~~~~~I~~iPT~i~fk~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 64 AVKLFDIMSTPVLIGYKDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred HHHHCCCccccEEEEEECCEEEEEEeCCCCHHHHHh
Confidence 578999999999987 8998765556677777654
No 98
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=94.07 E-value=0.048 Score=38.38 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=28.8
Q ss_pred HHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHH
Q 026422 184 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i 219 (238)
.+.++||.++||+++ ||+.+....|..+.+++.+.|
T Consensus 59 l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 59 IAEAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred HHHHCCCeeccEEEEEECCeEEEEEeCCccHHHHHHhh
Confidence 467889999999987 888876566778888877665
No 99
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=94.03 E-value=0.031 Score=36.31 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.6
Q ss_pred HHhcCCccccceEEEcCEEc
Q 026422 184 FSATRGVYATPTFFVNGFSL 203 (238)
Q Consensus 184 ~a~~~gV~gtPt~~vnG~~~ 203 (238)
.+.++|+.++||+++||+.+
T Consensus 44 l~~~~~i~~vPti~i~~~~~ 63 (67)
T cd02973 44 LADEYGVMSVPAIVINGKVE 63 (67)
T ss_pred HHHHcCCcccCEEEECCEEE
Confidence 56789999999999999865
No 100
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=93.99 E-value=0.43 Score=38.07 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=26.0
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
+++++|. |+...||.|....|.+.++.++++
T Consensus 74 gk~vvl~-F~atwCp~C~~~lp~l~~~~~~~~ 104 (189)
T TIGR02661 74 GRPTLLM-FTAPSCPVCDKLFPIIKSIARAEE 104 (189)
T ss_pred CCEEEEE-EECCCChhHHHHHHHHHHHHHhcC
Confidence 3567776 889999999999999999887654
No 101
>PTZ00051 thioredoxin; Provisional
Probab=93.90 E-value=0.13 Score=35.87 Aligned_cols=35 Identities=17% Similarity=0.484 Sum_probs=28.6
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLV 88 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~ 88 (238)
++.+|. |+...|++|..+.+.+.++.++++ ++.+.
T Consensus 19 ~~vli~-f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~ 53 (98)
T PTZ00051 19 ELVIVD-FYAEWCGPCKRIAPFYEECSKEYT-KMVFV 53 (98)
T ss_pred CeEEEE-EECCCCHHHHHHhHHHHHHHHHcC-CcEEE
Confidence 567776 999999999999999999988876 34443
No 102
>PTZ00256 glutathione peroxidase; Provisional
Probab=93.90 E-value=0.6 Score=37.01 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=28.2
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCC-cEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVV 89 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~ 89 (238)
++.++-+++.-.||.|..-.|.+.++.++|.+ .+.++-
T Consensus 41 k~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~ 79 (183)
T PTZ00256 41 KKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILA 79 (183)
T ss_pred CcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEE
Confidence 44444446788899999999999999999874 354443
No 103
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=93.85 E-value=0.15 Score=36.43 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=25.3
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHh
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHY 81 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~ 81 (238)
++.+|. |+...|++|..+.|.+.++.+++
T Consensus 19 ~~vlv~-F~a~wC~~C~~~~p~~~~~a~~~ 47 (108)
T cd02996 19 ELVLVN-FYADWCRFSQMLHPIFEEAAAKI 47 (108)
T ss_pred CEEEEE-EECCCCHHHHhhHHHHHHHHHHH
Confidence 467787 99999999999999999888765
No 104
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.85 E-value=0.07 Score=36.64 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=28.6
Q ss_pred EEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 55 ~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
.|.+|.-..||+|.+..+.++++..++. ++.+..+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~id 37 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVD 37 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEE
Confidence 3667999999999999999999887653 56666653
No 105
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=93.83 E-value=0.14 Score=37.31 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=27.6
Q ss_pred eEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 54 IIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 54 ~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.+|. |+-..||+|..+.|.++++..++ +++++...
T Consensus 25 vvv~-f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~v 59 (113)
T cd02975 25 LVVF-SSKEGCQYCEVTKQLLEELSELS-DKLKLEIY 59 (113)
T ss_pred EEEE-eCCCCCCChHHHHHHHHHHHHhc-CceEEEEE
Confidence 4443 67789999999999999999887 46766654
No 106
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=93.77 E-value=0.08 Score=34.49 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=22.8
Q ss_pred hcCCccccceEEEcCEEcCCCCCCCCHhhHHHHH
Q 026422 186 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 186 ~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i 219 (238)
+..|+.++|+++++|+.+.| .+.+++.++|
T Consensus 44 ~~~~~~~vP~~~~~~~~~~g----~~~~~i~~~i 73 (74)
T TIGR02196 44 KVLGQRGVPVIVIGHKIIVG----FDPEKLDQLL 73 (74)
T ss_pred HHhCCCcccEEEECCEEEee----CCHHHHHHHh
Confidence 45689999999999988665 3567766655
No 107
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=93.74 E-value=0.13 Score=40.74 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=31.1
Q ss_pred ceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 53 ~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
+++|. |+...||.|+.+.|.+.++..+|+ .++|.-.
T Consensus 85 ~VVV~-Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kV 120 (175)
T cd02987 85 TVVVH-IYEPGIPGCAALNSSLLCLAAEYP-AVKFCKI 120 (175)
T ss_pred EEEEE-EECCCCchHHHHHHHHHHHHHHCC-CeEEEEE
Confidence 67787 999999999999999999999998 5766554
No 108
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=93.60 E-value=0.14 Score=35.64 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=29.1
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLV 88 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~ 88 (238)
++.+|. |+...|++|..+.+.++++.+++.+++.+.
T Consensus 15 ~~v~v~-f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~ 50 (97)
T cd02984 15 KLLVLH-FWAPWAEPCKQMNQVFEELAKEAFPSVLFL 50 (97)
T ss_pred CEEEEE-EECCCCHHHHHHhHHHHHHHHHhCCceEEE
Confidence 567777 999999999999999999998864455444
No 109
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.49 E-value=0.19 Score=34.39 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=23.9
Q ss_pred hcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHHhh
Q 026422 186 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL 223 (238)
Q Consensus 186 ~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ll 223 (238)
...++.++|+++|||+.+.| ++++.+.+..-+
T Consensus 52 ~~~~~~~vP~ifi~g~~igg------~~~~~~~~~~~~ 83 (85)
T PRK11200 52 VGKPVETVPQIFVDQKHIGG------CTDFEAYVKENL 83 (85)
T ss_pred HCCCCCcCCEEEECCEEEcC------HHHHHHHHHHhc
Confidence 34478999999999999854 677777665543
No 110
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=93.48 E-value=0.18 Score=33.92 Aligned_cols=37 Identities=22% Similarity=0.516 Sum_probs=29.2
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
++.+|. |+...|++|..+.+.+.++.++ .+++.+...
T Consensus 11 ~~~ll~-~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i 47 (93)
T cd02947 11 KPVVVD-FWAPWCGPCKAIAPVLEELAEE-YPKVKFVKV 47 (93)
T ss_pred CcEEEE-EECCCChhHHHhhHHHHHHHHH-CCCceEEEE
Confidence 466776 8889999999999999999887 445655544
No 111
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.47 E-value=0.18 Score=35.12 Aligned_cols=40 Identities=28% Similarity=0.649 Sum_probs=32.6
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
++.+++ |+...||+|....|.+.++.++++..+.+...+.
T Consensus 33 ~~~~v~-f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~ 72 (127)
T COG0526 33 KPVLVD-FWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNV 72 (127)
T ss_pred ceEEEE-EEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEEC
Confidence 467777 6699999999999999999999886566665544
No 112
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=93.45 E-value=0.11 Score=38.07 Aligned_cols=38 Identities=8% Similarity=0.197 Sum_probs=28.2
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVV 89 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~ 89 (238)
.++++|. |+-..|++|+.+.|.+.+....+..+.+|+.
T Consensus 19 ~kpVlV~-F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~ 56 (117)
T cd02959 19 GKPLMLL-IHKTWCGACKALKPKFAESKEISELSHNFVM 56 (117)
T ss_pred CCcEEEE-EeCCcCHHHHHHHHHHhhhHHHHhhcCcEEE
Confidence 4678888 8899999999999999886554433334444
No 113
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=93.36 E-value=0.36 Score=35.52 Aligned_cols=38 Identities=16% Similarity=0.375 Sum_probs=31.2
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCC-cEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~ 90 (238)
++++|. |+...||.|....|.+.++.++|++ ++.++..
T Consensus 24 k~vvl~-F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i 62 (126)
T cd03012 24 KVVLLD-FWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGV 62 (126)
T ss_pred CEEEEE-EECCCCccHHHHHHHHHHHHHHcCcCCeEEEEe
Confidence 577787 8899999999999999999999974 4555544
No 114
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=93.20 E-value=0.21 Score=35.11 Aligned_cols=38 Identities=24% Similarity=0.529 Sum_probs=31.0
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhC-CcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG-PHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~-~~v~~~~~ 90 (238)
+++++. |+...||+|....+.+.++.++++ .++.+...
T Consensus 20 k~~ll~-f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v 58 (116)
T cd02966 20 KVVLVN-FWASWCPPCRAEMPELEALAKEYKDDGVEVVGV 58 (116)
T ss_pred CEEEEE-eecccChhHHHHhHHHHHHHHHhCCCCeEEEEE
Confidence 567776 889999999999999999999886 35666654
No 115
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=92.94 E-value=0.21 Score=37.20 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=30.7
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCC---cEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP---HVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~---~v~~~~~ 90 (238)
++++|. |+...||.|....|.+.++.+++.+ ++++++.
T Consensus 18 k~vll~-F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~V 58 (132)
T cd02964 18 KTVGLY-FSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFV 58 (132)
T ss_pred CEEEEE-EECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 577787 8899999999999999999888764 3555544
No 116
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.13 Score=47.06 Aligned_cols=38 Identities=18% Similarity=0.523 Sum_probs=31.4
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVV 89 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~ 89 (238)
.+.++|| |.-+.|+||+++.|.++++.+.|.+.=++++
T Consensus 384 ~KdVLvE-fyAPWCgHCk~laP~~eeLAe~~~~~~~vvi 421 (493)
T KOG0190|consen 384 GKDVLVE-FYAPWCGHCKALAPIYEELAEKYKDDENVVI 421 (493)
T ss_pred ccceEEE-EcCcccchhhhhhhHHHHHHHHhcCCCCcEE
Confidence 3678899 9999999999999999999999976333343
No 117
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=92.68 E-value=0.1 Score=38.63 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=25.6
Q ss_pred hcCCccccceEEE--cCEEcCCCCC-CCCHhhHHHHH
Q 026422 186 ATRGVYATPTFFV--NGFSLAGAGS-PLDYNGWRKVI 219 (238)
Q Consensus 186 ~~~gV~gtPt~~v--nG~~~~~~~~-~~~~e~~~~~i 219 (238)
...+|.|||||++ ||+.+....| ..+.+++.+++
T Consensus 84 i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred CcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 3468999999986 9998866545 55688887765
No 118
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.64 E-value=0.22 Score=40.61 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=28.7
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVV 89 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~ 89 (238)
+++.|.+|+...||+|..+.+.++++..+++ ++.+..
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~ 169 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEM 169 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEE
Confidence 3555666999999999999999988887754 566543
No 119
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=92.62 E-value=0.17 Score=35.83 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=28.4
Q ss_pred HHHhcCCccccceEEE-c---CEEcCCCCCCCCHhhHHHHH
Q 026422 183 KFSATRGVYATPTFFV-N---GFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v-n---G~~~~~~~~~~~~e~~~~~i 219 (238)
..+.++||.++||+++ + |+.+.-..|..+.+++.+.|
T Consensus 63 ~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 63 ALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred HHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 4567889999999975 4 66665556788999887766
No 120
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.60 E-value=0.12 Score=34.83 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=26.4
Q ss_pred HHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHH
Q 026422 184 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i 219 (238)
....+|+.++||+++ +|+.+....|..+.+++.+.|
T Consensus 55 ~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 55 LAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred HHHhcCcccccEEEEEECCEEEEEEecCCCHHHHHHHh
Confidence 467789999999987 787654445566777776665
No 121
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=92.52 E-value=0.16 Score=35.76 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=27.5
Q ss_pred HHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHH
Q 026422 183 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRK 217 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~ 217 (238)
..+.+++|.++||+++ +|+.+....|..+.+++.+
T Consensus 63 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 63 MLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred HHHHHcCCCccCEEEEEcCCCCcccCCCCCCHHHHHh
Confidence 3467889999999976 8887766777888887654
No 122
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=92.40 E-value=0.12 Score=36.30 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=26.3
Q ss_pred HHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHH
Q 026422 183 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKV 218 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~ 218 (238)
....++||+++||+++ +|+......|..+.+++.++
T Consensus 66 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 66 ALKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred HHHHhCCCccccEEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence 3468889999999976 77765555667777776554
No 123
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=92.37 E-value=0.24 Score=36.44 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=29.2
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
+++++|. |+...||.|....|.+.++.++++ +.++..
T Consensus 25 gk~vvv~-F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v 61 (127)
T cd03010 25 GKPYLLN-VWASWCAPCREEHPVLMALARQGR--VPIYGI 61 (127)
T ss_pred CCEEEEE-EEcCcCHHHHHHHHHHHHHHHhcC--cEEEEE
Confidence 3578887 889999999999999999987753 555443
No 124
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=92.33 E-value=0.28 Score=36.30 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=30.4
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCC---cEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP---HVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~---~v~~~~~ 90 (238)
.++++|. |+...||.|....|.+.++.+++.+ +++++..
T Consensus 18 gk~vll~-Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~i 59 (131)
T cd03009 18 GKTVGLY-FSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFI 59 (131)
T ss_pred CcEEEEE-EECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEE
Confidence 3577787 8889999999999999998887742 4555554
No 125
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=92.30 E-value=0.26 Score=36.22 Aligned_cols=40 Identities=5% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHHHhcCCcc--ccceEEE--cCE--EcCCCCCC-CCHhhHHHHHHH
Q 026422 182 FKFSATRGVY--ATPTFFV--NGF--SLAGAGSP-LDYNGWRKVIDP 221 (238)
Q Consensus 182 ~~~a~~~gV~--gtPt~~v--nG~--~~~~~~~~-~~~e~~~~~i~~ 221 (238)
.+++.++||+ |.||+.+ ||. ....+.|. ++.+++.++|.+
T Consensus 68 ~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 68 MELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred HHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 3568999999 9999964 774 22345675 899998877754
No 126
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=92.28 E-value=0.32 Score=35.37 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=26.3
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
++.+|. |+...||+|..+.|.+.++.+++.
T Consensus 20 ~~vvV~-f~a~wC~~C~~~~~~~~~la~~~~ 49 (114)
T cd02992 20 SAWLVE-FYASWCGHCRAFAPTWKKLARDLR 49 (114)
T ss_pred CeEEEE-EECCCCHHHHHHhHHHHHHHHHHH
Confidence 577787 999999999999999999888764
No 127
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=92.24 E-value=0.18 Score=40.45 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=31.2
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.+++|. |+...|+.|+.+.+.+.++..+|+ .++|+-.
T Consensus 103 ~~VVV~-Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI 139 (192)
T cd02988 103 TWVVVH-LYKDGIPLCRLLNQHLSELARKFP-DTKFVKI 139 (192)
T ss_pred CEEEEE-EECCCCchHHHHHHHHHHHHHHCC-CCEEEEE
Confidence 367787 999999999999999999999997 5666543
No 128
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=92.09 E-value=0.2 Score=35.63 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=28.8
Q ss_pred HHHhcCCccccceEEE-cCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 183 KFSATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v-nG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
..+.++||.++||+++ +|.......|..+.+++.+.++..
T Consensus 63 ~~~~~~~I~~~Pt~~l~~~~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 63 SIASEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred hHHhhcCCccccEEEEEcCCCceeecCCCCHHHHHHHHHhh
Confidence 3467899999999975 443333356778889888887653
No 129
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=92.07 E-value=0.18 Score=36.10 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=26.7
Q ss_pred HHHhcCCccccceEEE--cCEEc-CCCCCCCCHhhHHHHH
Q 026422 183 KFSATRGVYATPTFFV--NGFSL-AGAGSPLDYNGWRKVI 219 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~-~~~~~~~~~e~~~~~i 219 (238)
..+.++||+++||+++ ||+.. ....|..+.+++.++|
T Consensus 69 ~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 69 DIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred HHHHhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 3578899999999976 78732 3345677888776543
No 130
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=92.00 E-value=0.13 Score=36.03 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=26.7
Q ss_pred HHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHH
Q 026422 183 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKV 218 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~ 218 (238)
..+.+++|.++||+++ +|+......|..+.+++.++
T Consensus 64 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 64 ELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred hhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHHHHHhh
Confidence 3467889999999976 78765445667888876654
No 131
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=91.99 E-value=0.19 Score=34.53 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=26.3
Q ss_pred HHHHhcCCccccceEEE--cC-EEcCCCCCCCCHhhHHHH
Q 026422 182 FKFSATRGVYATPTFFV--NG-FSLAGAGSPLDYNGWRKV 218 (238)
Q Consensus 182 ~~~a~~~gV~gtPt~~v--nG-~~~~~~~~~~~~e~~~~~ 218 (238)
....+++||.++||+++ +| +......|..+.+++.+.
T Consensus 61 ~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 61 NDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 45578899999999976 34 455556666777776553
No 132
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=0.19 Score=36.86 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=26.6
Q ss_pred CCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 63 VCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 63 ~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
-||+|..++|.+.+.+++.+.++.|+..+.
T Consensus 44 WCPdCV~AEPvi~~alk~ap~~~~~v~v~V 73 (128)
T KOG3425|consen 44 WCPDCVAAEPVINEALKHAPEDVHFVHVYV 73 (128)
T ss_pred CCchHHHhhHHHHHHHHhCCCceEEEEEEe
Confidence 599999999999999998898998887653
No 133
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=91.74 E-value=0.27 Score=35.03 Aligned_cols=36 Identities=8% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHH
Q 026422 183 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i 219 (238)
..+.+++|.|+|||++ ||+.+....| ...+++.+.+
T Consensus 62 ~l~~~~~V~~~Pt~~~~~~G~~v~~~~G-~~~~~l~~~~ 99 (103)
T cd02985 62 ELCRREKIIEVPHFLFYKDGEKIHEEEG-IGPDELIGDV 99 (103)
T ss_pred HHHHHcCCCcCCEEEEEeCCeEEEEEeC-CCHHHHHHHH
Confidence 4578899999999976 8987654444 3345555544
No 134
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=91.74 E-value=0.24 Score=31.39 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=22.8
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
|.+|.-..||+|......|++. ++.++.+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv 31 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDV 31 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEG
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEccc
Confidence 4579999999999987777433 377777643
No 135
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=91.55 E-value=0.16 Score=36.12 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=26.3
Q ss_pred HHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHH
Q 026422 183 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i 219 (238)
..+.++||.++||+++ +| .+....|..+.+++.++|
T Consensus 63 ~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 63 SLLSRYGVVGFPTILLFNST-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred HHHHhcCCeecCEEEEEcCC-ceeEecCCCCHHHHHhhC
Confidence 4578899999999976 56 444456778888776643
No 136
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=91.36 E-value=0.34 Score=44.18 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=31.0
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCc-EEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH-VSLVV 89 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~-v~~~~ 89 (238)
.++++|+ |+-..||+|+.+.|.++++.+++.++ +.|..
T Consensus 371 ~k~VLV~-FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~k 409 (463)
T TIGR00424 371 KEAWLVV-LYAPWCPFCQAMEASYLELAEKLAGSGVKVAK 409 (463)
T ss_pred CCeEEEE-EECCCChHHHHHHHHHHHHHHHhccCCcEEEE
Confidence 3567787 99999999999999999999998753 54443
No 137
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=91.28 E-value=0.34 Score=32.49 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=27.5
Q ss_pred EEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 55 ~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
.|++ +...||+|..+...++++..+++ +++....
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~ 35 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELG--IEVEIID 35 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTT--EEEEEEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcC--CeEEEEE
Confidence 4775 78889999999999999999885 6666654
No 138
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=91.22 E-value=0.4 Score=29.15 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=25.2
Q ss_pred EeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 58 AFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
+|....||+|....+.+.++ .....++.+....
T Consensus 3 ~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~ 35 (69)
T cd01659 3 LFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVD 35 (69)
T ss_pred EEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEE
Confidence 48899999999999999988 3334466666654
No 139
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=91.22 E-value=0.35 Score=35.00 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=33.8
Q ss_pred HHHhcCCccccceEEE----cCEEcCCCCCCCCHhhHHHHHHHhhh
Q 026422 183 KFSATRGVYATPTFFV----NGFSLAGAGSPLDYNGWRKVIDPLLS 224 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v----nG~~~~~~~~~~~~e~~~~~i~~ll~ 224 (238)
+.+..+++.++|++++ +|+.+.-..|..+.+++...|++...
T Consensus 67 ~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 67 RFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred HHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 4577788999999964 57777666788999999999988764
No 140
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=91.11 E-value=0.26 Score=35.05 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=26.6
Q ss_pred HHHhcCCccccceEEE--cCE-----EcCCCCCCCCHhhHHHHH
Q 026422 183 KFSATRGVYATPTFFV--NGF-----SLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~-----~~~~~~~~~~~e~~~~~i 219 (238)
..+.++||.|+||+++ +|+ ......|..+.+++.++|
T Consensus 65 ~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 65 PLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred HHHHHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 4567899999999986 554 233455778888877765
No 141
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=90.75 E-value=0.32 Score=35.35 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=29.0
Q ss_pred HHHhcCCccccceEEE--cCEEcC--CCCCCCCHhhHHHHHHHhhh
Q 026422 183 KFSATRGVYATPTFFV--NGFSLA--GAGSPLDYNGWRKVIDPLLS 224 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~--~~~~~~~~e~~~~~i~~ll~ 224 (238)
..+.++||.++||+++ ||.... ...|..+-+++.++|+.++.
T Consensus 66 ~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 66 EKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred HHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHHh
Confidence 4578899999999998 332211 12345677888888887763
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.75 E-value=4.5 Score=29.40 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=23.1
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
|.+|....||+|++....+++. ++.|.++.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi 32 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNL 32 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEec
Confidence 5579999999999977666543 366777754
No 143
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=90.71 E-value=1.3 Score=36.94 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=32.0
Q ss_pred CCCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 50 DSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 50 ~a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
+.++.++. .....||+|+.-...|--.+.+|| ++.+.++.
T Consensus 57 ~Gk~~v~~-igw~gCP~~A~~sW~L~~ALsrfG-n~~l~~~~ 96 (249)
T PF06053_consen 57 NGKPEVIF-IGWEGCPYCAAESWALYIALSRFG-NFSLEYHY 96 (249)
T ss_pred CCeeEEEE-EecccCccchhhHHHHHHHHHhcC-CeeeEEee
Confidence 35677776 999999999998888888888998 56666653
No 144
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=90.66 E-value=0.25 Score=34.09 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=25.1
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
|.+|+-..||||.++...|.++..+++ .+.+..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~i 35 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYI 35 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEE
Confidence 457999999999999999988765443 3444444
No 145
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=90.34 E-value=0.37 Score=33.74 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=25.1
Q ss_pred HHHhcCCccccceEEE--cC-EEcCCCCCCCCHhhHHHHH
Q 026422 183 KFSATRGVYATPTFFV--NG-FSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG-~~~~~~~~~~~~e~~~~~i 219 (238)
..+.++||+++||+++ +| +......|..+.+++.+++
T Consensus 63 ~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 63 SLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred HHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 3467889999999975 56 2333455667787775543
No 146
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=90.19 E-value=0.52 Score=36.11 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=26.5
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
+++++|. |+.-.||.|+...|.|.++.+++.
T Consensus 25 gk~vlL~-FwAsWCppCr~e~P~L~~ly~~~~ 55 (146)
T cd03008 25 NRVLLLF-FGAVVSPQCQLFAPKLKDFFVRLT 55 (146)
T ss_pred CCEEEEE-EECCCChhHHHHHHHHHHHHHHHH
Confidence 3678887 999999999999999999877654
No 147
>PHA02125 thioredoxin-like protein
Probab=90.19 E-value=0.33 Score=32.45 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=21.6
Q ss_pred HHhcCCccccceEEEcCEEcCCCCC-CCCHhhHHHHH
Q 026422 184 FSATRGVYATPTFFVNGFSLAGAGS-PLDYNGWRKVI 219 (238)
Q Consensus 184 ~a~~~gV~gtPt~~vnG~~~~~~~~-~~~~e~~~~~i 219 (238)
.+.++||.++||++ +|+.+....| ..+..++++.|
T Consensus 38 l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 38 LTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred HHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHHHh
Confidence 36788999999997 7765432222 23345554443
No 148
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=90.05 E-value=0.51 Score=29.84 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=13.9
Q ss_pred CccccceEEEcCEEc
Q 026422 189 GVYATPTFFVNGFSL 203 (238)
Q Consensus 189 gV~gtPt~~vnG~~~ 203 (238)
|..++|+++|||+.+
T Consensus 46 g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 46 GVRTVPQVFIDGKFI 60 (60)
T ss_dssp SSSSSSEEEETTEEE
T ss_pred CCCccCEEEECCEEC
Confidence 999999999999874
No 149
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=89.91 E-value=0.52 Score=36.71 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=30.9
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhC-CcEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYG-PHVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~-~~v~~~~~ 90 (238)
.++++|. |+...||.|....+.+.++.++|. .+++++-.
T Consensus 25 ~k~~ll~-f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~i 64 (171)
T cd02969 25 GKALVVM-FICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAI 64 (171)
T ss_pred CCEEEEE-EECCCCccHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 3567776 889999999999999999999987 34655443
No 150
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=89.87 E-value=0.33 Score=33.96 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=25.2
Q ss_pred HHHhcCCccccceEEE--cC-EEcCCCCCCCCHhhHHHH
Q 026422 183 KFSATRGVYATPTFFV--NG-FSLAGAGSPLDYNGWRKV 218 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG-~~~~~~~~~~~~e~~~~~ 218 (238)
..+.+++|.++|++++ +| +......|..+.+++.+.
T Consensus 66 ~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 66 DLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred hhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 4578899999999976 34 444445566777777654
No 151
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=89.85 E-value=0.52 Score=39.99 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=29.2
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
++.+|. |+.-.||+|....|.+.++.++|+ +.+...
T Consensus 167 k~~Lv~-F~AswCp~C~~~~P~L~~la~~yg--~~Vi~V 202 (271)
T TIGR02740 167 KSGLFF-FFKSDCPYCHQQAPILQAFEDRYG--IEVLPV 202 (271)
T ss_pred CeEEEE-EECCCCccHHHHhHHHHHHHHHcC--cEEEEE
Confidence 567776 888899999999999999999986 444433
No 152
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=89.53 E-value=0.7 Score=33.45 Aligned_cols=40 Identities=18% Similarity=0.409 Sum_probs=31.5
Q ss_pred CCceEEEEeeCC-CCchhhhhchhHHHHHHHhCC-cEEEEEEe
Q 026422 51 SDAIIIEAFFDP-VCPDSRDAWPPLKQALQHYGP-HVSLVVHL 91 (238)
Q Consensus 51 a~~~~ve~f~D~-~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~~ 91 (238)
.++++|- |+.. .||+|....+.+.++.++|.. ++++....
T Consensus 25 gk~~vl~-f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is 66 (124)
T PF00578_consen 25 GKPVVLF-FWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIS 66 (124)
T ss_dssp TSEEEEE-EESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred CCcEEEE-EeCccCccccccchhHHHHHhhhhccceEEeeecc
Confidence 3677787 5555 999999999999999988864 57776653
No 153
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=89.25 E-value=0.61 Score=37.09 Aligned_cols=44 Identities=27% Similarity=0.266 Sum_probs=32.5
Q ss_pred hcCCc--cccceEEE---cCEEc-CCCCCCCCHhhHHHHHHHhhhhcCCC
Q 026422 186 ATRGV--YATPTFFV---NGFSL-AGAGSPLDYNGWRKVIDPLLSEKGKK 229 (238)
Q Consensus 186 ~~~gV--~gtPt~~v---nG~~~-~~~~~~~~~e~~~~~i~~ll~~~~~~ 229 (238)
..+|+ .++||.|+ ||+.+ ....|..+.+++.+.|+.++.....|
T Consensus 128 ~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~~~~~ 177 (181)
T PRK13728 128 TFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVLQMYGGK 177 (181)
T ss_pred HHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhhhccc
Confidence 34563 79999875 68764 23457789999999999999875544
No 154
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=89.20 E-value=0.76 Score=32.17 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=29.0
Q ss_pred HHHhcCCcc--ccceEEE--c--CEEcCCCCCCCCHhhHHHHHHHh
Q 026422 183 KFSATRGVY--ATPTFFV--N--GFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 183 ~~a~~~gV~--gtPt~~v--n--G~~~~~~~~~~~~e~~~~~i~~l 222 (238)
..+..+||. ++|++++ + |+.+.-..+..+.+++.++|+..
T Consensus 57 ~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 57 RHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred HHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 467889999 9999986 4 55543333445889998888764
No 155
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=88.90 E-value=0.73 Score=34.35 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=31.5
Q ss_pred CCceEEEEeeCCCCch-hhhhchhHHHHHHHhCC----cEEEEEEe
Q 026422 51 SDAIIIEAFFDPVCPD-SRDAWPPLKQALQHYGP----HVSLVVHL 91 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~-C~~~~~~l~~~~~~~~~----~v~~~~~~ 91 (238)
+++++|. |+...||. |....+.+.++.+++.+ +++++...
T Consensus 22 gk~~vl~-f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs 66 (142)
T cd02968 22 GKPVLVY-FGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFIS 66 (142)
T ss_pred CCEEEEE-EEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEE
Confidence 3567776 89999997 99999999999988864 37666653
No 156
>PTZ00102 disulphide isomerase; Provisional
Probab=88.72 E-value=0.66 Score=42.23 Aligned_cols=32 Identities=16% Similarity=0.466 Sum_probs=27.7
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCC
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP 83 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~ 83 (238)
.++++|. |+...|++|+.+.|.+.++.+.+.+
T Consensus 375 ~k~vlv~-f~a~wC~~C~~~~p~~~~~a~~~~~ 406 (477)
T PTZ00102 375 DKDVLLE-IYAPWCGHCKNLEPVYNELGEKYKD 406 (477)
T ss_pred CCCEEEE-EECCCCHHHHHHHHHHHHHHHHhcc
Confidence 4567787 9999999999999999999888764
No 157
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.64 E-value=8.4 Score=28.78 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=23.9
Q ss_pred HhcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHH
Q 026422 185 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 185 a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
+..-.+---|-++.+++.+.| ++.++|..++..
T Consensus 84 ~~~p~LikRPIi~~~~~~~vG----~~~e~~~~~l~~ 116 (131)
T PRK01655 84 SDNPGLLRRPIIIDEKRLQVG----YNEDEIRAFLPR 116 (131)
T ss_pred HhCcceEeCCEEEECCEEEec----CCHHHHHHHhhH
Confidence 455556778987778887776 578888887754
No 158
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=88.60 E-value=0.94 Score=30.35 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=16.8
Q ss_pred hcCCccccceEEEcCEEcCC
Q 026422 186 ATRGVYATPTFFVNGFSLAG 205 (238)
Q Consensus 186 ~~~gV~gtPt~~vnG~~~~~ 205 (238)
...|+.++|++++||+.+.|
T Consensus 48 ~~~g~~~vP~v~i~g~~igg 67 (84)
T TIGR02180 48 EITGQRTVPNIFINGKFIGG 67 (84)
T ss_pred HHhCCCCCCeEEECCEEEcC
Confidence 34688999999999999865
No 159
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=88.59 E-value=0.8 Score=41.28 Aligned_cols=37 Identities=19% Similarity=0.551 Sum_probs=30.4
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCC---cEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP---HVSLV 88 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~---~v~~~ 88 (238)
...++|. |+...|++|+.+.|.+.++.+.+.+ ++.|.
T Consensus 364 ~~~vlv~-f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~ 403 (462)
T TIGR01130 364 TKDVLVE-FYAPWCGHCKNLAPIYEELAEKYKDAESDVVIA 403 (462)
T ss_pred CCeEEEE-EECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEE
Confidence 3567777 9999999999999999999998875 45444
No 160
>PLN02309 5'-adenylylsulfate reductase
Probab=88.35 E-value=0.9 Score=41.46 Aligned_cols=32 Identities=9% Similarity=0.318 Sum_probs=27.8
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCC
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP 83 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~ 83 (238)
.++.+|. |+-+.||+|+.+.|.+.++.+++.+
T Consensus 365 ~k~vlV~-FyApWC~~Cq~m~p~~e~LA~~~~~ 396 (457)
T PLN02309 365 KEPWLVV-LYAPWCPFCQAMEASYEELAEKLAG 396 (457)
T ss_pred CCeEEEE-EECCCChHHHHHHHHHHHHHHHhcc
Confidence 3567777 9999999999999999999998864
No 161
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=88.28 E-value=0.82 Score=33.50 Aligned_cols=22 Identities=18% Similarity=0.390 Sum_probs=18.6
Q ss_pred HHHhcCCccccceEEE--cCEEcC
Q 026422 183 KFSATRGVYATPTFFV--NGFSLA 204 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~ 204 (238)
..+.++||.++|||++ ||+.+.
T Consensus 59 ~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 59 DFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHcCCCCCCEEEEEECCEEEE
Confidence 4578999999999986 898864
No 162
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=87.89 E-value=0.86 Score=34.78 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=28.9
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCC-cEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVV 89 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~ 89 (238)
++++|. |+...|| |..-.|.+.++.++|.+ ++.++-
T Consensus 23 k~vvl~-fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~ 59 (152)
T cd00340 23 KVLLIV-NVASKCG-FTPQYEGLEALYEKYKDRGLVVLG 59 (152)
T ss_pred CEEEEE-EEcCCCC-chHHHHHHHHHHHHhcCCCEEEEE
Confidence 567776 8999999 99999999999999863 354443
No 163
>PLN02412 probable glutathione peroxidase
Probab=87.81 E-value=0.73 Score=35.94 Aligned_cols=38 Identities=11% Similarity=0.271 Sum_probs=30.0
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCc-EEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH-VSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~-v~~~~~ 90 (238)
++++|. |+...||.|..-.|.+.++.++|.++ +.++-.
T Consensus 30 k~vlv~-f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv 68 (167)
T PLN02412 30 KVLLIV-NVASKCGLTDSNYKELNVLYEKYKEQGFEILAF 68 (167)
T ss_pred CEEEEE-EeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEe
Confidence 567776 88999999999999999999999743 444433
No 164
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=87.69 E-value=1 Score=29.53 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=20.0
Q ss_pred CCccccceEEEcCEEcCCCCCCCCHhhHHHHH
Q 026422 188 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 188 ~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i 219 (238)
.|...+|.++|||+.+.| .+++.+.+
T Consensus 46 ~g~~~vP~ifi~g~~igg------~~~l~~~l 71 (72)
T cd03029 46 TGAMTVPQVFIDGELIGG------SDDLEKYF 71 (72)
T ss_pred hCCCCcCeEEECCEEEeC------HHHHHHHh
Confidence 578999999999998854 56665544
No 165
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=87.67 E-value=0.81 Score=34.94 Aligned_cols=38 Identities=13% Similarity=0.348 Sum_probs=30.5
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCC-cEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~ 90 (238)
++.+|. |+-..||.|....|.+.++.++|++ .+.+.-.
T Consensus 23 k~vvv~-~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i 61 (153)
T TIGR02540 23 KVSLVV-NVASECGFTDQNYRALQELHRELGPSHFNVLAF 61 (153)
T ss_pred CEEEEE-EeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEE
Confidence 566676 8889999999999999999999974 4555443
No 166
>PF13728 TraF: F plasmid transfer operon protein
Probab=87.56 E-value=0.64 Score=38.03 Aligned_cols=29 Identities=28% Similarity=0.514 Sum_probs=25.7
Q ss_pred ceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 53 ~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
.-++ +|++-.||+|..+.|.++.+.++|+
T Consensus 122 ~gL~-~F~~~~C~~C~~~~pil~~~~~~yg 150 (215)
T PF13728_consen 122 YGLF-FFYRSDCPYCQQQAPILQQFADKYG 150 (215)
T ss_pred eEEE-EEEcCCCchhHHHHHHHHHHHHHhC
Confidence 3455 4999999999999999999999998
No 167
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=87.53 E-value=0.26 Score=32.54 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=18.3
Q ss_pred EEEeeCCCCchhhhhchhHHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQA 77 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~ 77 (238)
|.+|+...||+|+++.+.+.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 4579999999999988877654
No 168
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=87.16 E-value=0.6 Score=32.31 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=23.6
Q ss_pred HHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHH
Q 026422 183 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i 219 (238)
..+.++||.++||+++ ||+.+....| ...+++.+.|
T Consensus 59 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 59 EISEKFEITAVPTFVFFRNGTIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred HHHHhcCCccccEEEEEECCEEEEEEeC-CCHHHHHHhh
Confidence 3568899999999976 7887543333 3455555443
No 169
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=87.04 E-value=1.6 Score=29.90 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=20.6
Q ss_pred CccccceEEEcCEEcCCCCCCCCHhhHHHHHHH
Q 026422 189 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 189 gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
++.++|+++|||+.+-| .+++.+++.+
T Consensus 54 ~~~tVP~ifi~g~~igG------~~dl~~~~~~ 80 (86)
T TIGR02183 54 PVETVPQIFVDEKHVGG------CTDFEQLVKE 80 (86)
T ss_pred CCCCcCeEEECCEEecC------HHHHHHHHHh
Confidence 46899999999999854 4776666544
No 170
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=86.88 E-value=0.73 Score=30.39 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=21.8
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
|.+|+-..||+|.+....+++. ++.++.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~ 31 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEI 31 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEE
Confidence 4569999999999988777753 3556655
No 171
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.38 E-value=2.8 Score=32.46 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=17.6
Q ss_pred CceEEEEeeCCCCchhhhhchhHH
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLK 75 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~ 75 (238)
+..++ ||.+..|+||.++-..+.
T Consensus 43 Kylll-mfes~~C~yC~~~KKd~~ 65 (182)
T COG2143 43 KYLLL-MFESNGCSYCERFKKDLK 65 (182)
T ss_pred cEEEE-EEcCCCChHHHHHHHhhc
Confidence 34444 699999999999976553
No 172
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=86.29 E-value=1.4 Score=29.65 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=20.6
Q ss_pred cCCccccceEEEcCEEcCCCCCCCCHhhHHHHH
Q 026422 187 TRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 187 ~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i 219 (238)
..|...+|.+++||+.+.| ++++.+.|
T Consensus 52 ~~g~~~vP~i~i~g~~igG------~~~l~~~l 78 (79)
T TIGR02190 52 VTGATTVPQVFIGGKLIGG------SDELEAYL 78 (79)
T ss_pred HHCCCCcCeEEECCEEEcC------HHHHHHHh
Confidence 3588999999999999855 46665544
No 173
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=86.27 E-value=0.42 Score=32.12 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.7
Q ss_pred EeeCCCCchhhhhchhHHHHH
Q 026422 58 AFFDPVCPDSRDAWPPLKQAL 78 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~~~~ 78 (238)
+|+-..||+|.++.+.+.++.
T Consensus 3 ~f~~~~Cp~C~~~~~~L~~~~ 23 (84)
T TIGR02180 3 VFSKSYCPYCKKAKEILAKLN 23 (84)
T ss_pred EEECCCChhHHHHHHHHHHcC
Confidence 599999999999999988764
No 174
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=86.24 E-value=1.2 Score=32.96 Aligned_cols=40 Identities=3% Similarity=0.072 Sum_probs=30.4
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhC-CcEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYG-PHVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~-~~v~~~~~ 90 (238)
.++++|.+|....||.|....+.+.++.+++. +.+.++..
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~i 62 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGV 62 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 35777874558899999999999999988874 34555554
No 175
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=86.21 E-value=0.89 Score=32.97 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=24.5
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHH
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQH 80 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~ 80 (238)
++++|. |+...||+|....|.+.++.++
T Consensus 21 k~~vl~-F~~~~C~~C~~~~~~l~~~~~~ 48 (123)
T cd03011 21 KPVLVY-FWATWCPVCRFTSPTVNQLAAD 48 (123)
T ss_pred CEEEEE-EECCcChhhhhhChHHHHHHhh
Confidence 577787 8899999999999999998876
No 176
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=86.01 E-value=0.94 Score=33.44 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=24.7
Q ss_pred CCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 62 PVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 62 ~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
.-||+|...+|.+++.....+++.++++..
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~ 65 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVE 65 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 469999999999999988877778877764
No 177
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=85.90 E-value=1.5 Score=29.20 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=16.2
Q ss_pred cCCccccceEEEcCEEcCC
Q 026422 187 TRGVYATPTFFVNGFSLAG 205 (238)
Q Consensus 187 ~~gV~gtPt~~vnG~~~~~ 205 (238)
..|..++|+++|||+.+-|
T Consensus 44 ~~g~~~vP~i~i~g~~igg 62 (79)
T TIGR02181 44 RSGRRTVPQIFIGDVHVGG 62 (79)
T ss_pred HhCCCCcCEEEECCEEEcC
Confidence 3578999999999999865
No 178
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.88 E-value=1.1 Score=39.87 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=30.8
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLV 88 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~ 88 (238)
..+.+|+ |+++.|++|..+.|++.++...+.+++.+-
T Consensus 47 ~~~~~v~-fyapwc~~c~~l~~~~~~~~~~l~~~~~~~ 83 (383)
T KOG0191|consen 47 DSPWLVE-FYAPWCGHCKKLAPTYKKLAKALKGKVKIG 83 (383)
T ss_pred CCceEEE-EECCCCcchhhhchHHHHHHHHhcCceEEE
Confidence 4578888 999999999999999999988887654433
No 179
>PHA02125 thioredoxin-like protein
Probab=85.69 E-value=0.7 Score=30.79 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=17.8
Q ss_pred EeeCCCCchhhhhchhHHHH
Q 026422 58 AFFDPVCPDSRDAWPPLKQA 77 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~~~ 77 (238)
+|+...||+|+.+.|.++++
T Consensus 4 ~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 4 LFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEECCCCHhHHHHHHHHHHH
Confidence 49999999999999998765
No 180
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=85.49 E-value=1.5 Score=33.51 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=33.7
Q ss_pred HHHhcCCccccceEE-E--cCE-EcCCCCC--------CCCHhhHHHHHHHhhhhcCC
Q 026422 183 KFSATRGVYATPTFF-V--NGF-SLAGAGS--------PLDYNGWRKVIDPLLSEKGK 228 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~-v--nG~-~~~~~~~--------~~~~e~~~~~i~~ll~~~~~ 228 (238)
..+..++|++.||++ + ||+ .++...| ..+.+++.+.++.++....+
T Consensus 68 dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~ 125 (142)
T PLN00410 68 DFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
T ss_pred HHHHHcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhc
Confidence 457899999886655 4 888 5554445 57889999999988876533
No 181
>PHA03050 glutaredoxin; Provisional
Probab=85.21 E-value=2.1 Score=30.99 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.9
Q ss_pred cCCccccceEEEcCEEcCC
Q 026422 187 TRGVYATPTFFVNGFSLAG 205 (238)
Q Consensus 187 ~~gV~gtPt~~vnG~~~~~ 205 (238)
..|.+.+|++||||+.+-|
T Consensus 64 ~tG~~tVP~IfI~g~~iGG 82 (108)
T PHA03050 64 ITGGRTVPRIFFGKTSIGG 82 (108)
T ss_pred HcCCCCcCEEEECCEEEeC
Confidence 3477899999999999855
No 182
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=85.13 E-value=1.3 Score=34.33 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=30.8
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCc---EEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH---VSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~---v~~~~~ 90 (238)
++.+.+. |+--.||-|+.|-|.+++++++..++ +.++|.
T Consensus 33 gKvV~ly-FsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfV 74 (157)
T KOG2501|consen 33 GKVVGLY-FSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFV 74 (157)
T ss_pred CcEEEEE-EEEEECCchhhCCchHHHHHHHHHhcCCceEEEEE
Confidence 3566665 89999999999999999988876544 666665
No 183
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=85.03 E-value=1.3 Score=33.11 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=29.9
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
.+++++.+|-...||+|..-.+.+.++.+++. ++.++-.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~I 64 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTI 64 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEE
Confidence 35788875666669999999999999999885 5655544
No 184
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.01 E-value=1.4 Score=36.68 Aligned_cols=42 Identities=31% Similarity=0.456 Sum_probs=31.9
Q ss_pred HhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHhhhhcC
Q 026422 185 SATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKG 227 (238)
Q Consensus 185 a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~ll~~~~ 227 (238)
|..+||..+|||++ ||+.+....| .+...+++.|.+.+....
T Consensus 67 aa~~gV~amPTFiff~ng~kid~~qG-Ad~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 67 AATNGVNAMPTFIFFRNGVKIDQIQG-ADASGLEEKVAKYASTSA 110 (288)
T ss_pred hhhcCcccCceEEEEecCeEeeeecC-CCHHHHHHHHHHHhccCc
Confidence 67889999999974 9999876544 467778888877766643
No 185
>PTZ00051 thioredoxin; Provisional
Probab=84.97 E-value=0.61 Score=32.39 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=22.2
Q ss_pred HHHhcCCccccceEEE--cCEEcCCCCCCCCHhhH
Q 026422 183 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGW 215 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~ 215 (238)
..+.++||.++||+++ ||+.+....|. ..+++
T Consensus 62 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 62 EVAEKENITSMPTFKVFKNGSVVDTLLGA-NDEAL 95 (98)
T ss_pred HHHHHCCCceeeEEEEEeCCeEEEEEeCC-CHHHh
Confidence 4678999999999986 78776443332 34444
No 186
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=84.60 E-value=0.41 Score=34.68 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=22.3
Q ss_pred CCCchhhhhchhHHHHHHHhCCcEEEEEEeccccC
Q 026422 62 PVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPY 96 (238)
Q Consensus 62 ~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~ 96 (238)
|.||||..++-.|.-.- ....++.+++..||-|.
T Consensus 22 f~Cp~c~~iEGlLa~~P-~l~~~ldV~rV~f~RPR 55 (112)
T PF11287_consen 22 FYCPHCAAIEGLLASFP-DLRERLDVRRVDFPRPR 55 (112)
T ss_pred EECCchHHHHhHHhhCh-hhhhcccEEEeCCCCch
Confidence 78999998877665221 11236778887776653
No 187
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=84.59 E-value=2 Score=32.11 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=26.3
Q ss_pred ceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 53 ~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
+..+-+|.-..||+|...-|.+.++.+..| ++++.+.
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i 78 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRII 78 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEE
Confidence 445557999999999999999999999876 6666654
No 188
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=84.49 E-value=0.83 Score=30.11 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=21.7
Q ss_pred EEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 57 EAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
.+|.-..||+|......|.+. ++.|..++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~d 30 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEIN 30 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEE
Confidence 469999999999988877642 36666653
No 189
>PHA03050 glutaredoxin; Provisional
Probab=84.48 E-value=0.71 Score=33.43 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=18.1
Q ss_pred EEEeeCCCCchhhhhchhHHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQA 77 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~ 77 (238)
|.+|+-..||||.+....+++.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 5569999999999887777655
No 190
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=84.34 E-value=0.69 Score=30.95 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=18.5
Q ss_pred EEEeeCCCCchhhhhchhHHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQA 77 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~ 77 (238)
|.+|+...||+|..+.+.+.++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~ 23 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKEL 23 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHc
Confidence 3469999999999998888776
No 191
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=84.33 E-value=1.5 Score=41.12 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=31.6
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
++..|++|..+.||+|......++++..+.+ +|.....
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i 513 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMI 513 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEE
Confidence 4677998999999999999999999988876 5665554
No 192
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=84.22 E-value=0.91 Score=32.84 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=26.3
Q ss_pred HHHHHHhcCCccccceEEE--cCEEcCCCCCCCCHhhH
Q 026422 180 VSFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGW 215 (238)
Q Consensus 180 ~~~~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~ 215 (238)
.+.+++.++|+...|++++ +|+++-...|-.+++++
T Consensus 70 ~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~dY 107 (107)
T PF07449_consen 70 AERALAARFGVRRWPALVFFRDGRYLGAIEGIRDWADY 107 (107)
T ss_dssp HHHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTHHHH
T ss_pred hHHHHHHHhCCccCCeEEEEECCEEEEEecCeeccccC
Confidence 4566789999999999986 99998555555666553
No 193
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.14 E-value=1.5 Score=40.58 Aligned_cols=38 Identities=11% Similarity=0.164 Sum_probs=30.8
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
+++.|++|..+.||||......+.++....+ +|.....
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~i 153 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMI 153 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEE
Confidence 4677888999999999999999988887766 6666554
No 194
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=83.97 E-value=0.86 Score=38.12 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=32.3
Q ss_pred HhcCCccccceEEE-c---CEEcCCCCCCCCHhhHHHHHHHhhhhcC
Q 026422 185 SATRGVYATPTFFV-N---GFSLAGAGSPLDYNGWRKVIDPLLSEKG 227 (238)
Q Consensus 185 a~~~gV~gtPt~~v-n---G~~~~~~~~~~~~e~~~~~i~~ll~~~~ 227 (238)
+.++||.-||++++ | ++......|..|.+++.+.|.......+
T Consensus 199 a~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~~ 245 (248)
T PRK13703 199 AQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTDFK 245 (248)
T ss_pred HHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhccC
Confidence 35788999999975 3 5665555678999999998887776653
No 195
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=83.62 E-value=0.86 Score=29.36 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=21.7
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
|.+|....||+|....+.+++. ++.+..+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vd 31 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEID 31 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEe
Confidence 4579999999999987776542 35565553
No 196
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=83.54 E-value=0.79 Score=32.53 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=16.9
Q ss_pred EEEeeCCCCchhhhhchhHHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQA 77 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~ 77 (238)
|.+|+-..||||.+....+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4469999999999887755543
No 197
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=83.50 E-value=0.93 Score=28.95 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=17.8
Q ss_pred EEEeeCCCCchhhhhchhHHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQA 77 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~ 77 (238)
|.+|....||+|......+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~ 23 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3469999999999988877755
No 198
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=83.12 E-value=2.5 Score=31.48 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=29.7
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhC-CcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG-PHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~-~~v~~~~~ 90 (238)
++++|-+|....||.|....+.+.++.+++. .++.++..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V 63 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAV 63 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 4566654568999999999999999998885 34666554
No 199
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=83.10 E-value=0.96 Score=29.73 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=17.4
Q ss_pred EEEeeCCCCchhhhhchhHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQ 76 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~ 76 (238)
|.+|+-..||+|......+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~ 22 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK 22 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 457999999999998777764
No 200
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=83.05 E-value=2.2 Score=27.33 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=19.7
Q ss_pred CccccceEEEcCEEcCCCCCCCCHhhHHHH
Q 026422 189 GVYATPTFFVNGFSLAGAGSPLDYNGWRKV 218 (238)
Q Consensus 189 gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~ 218 (238)
++.++|+++++|+.+.| .+.++++++
T Consensus 47 ~~~~vP~i~~~~~~i~g----~~~~~l~~~ 72 (73)
T cd02976 47 GYRSVPVVVIGDEHLSG----FRPDKLRAL 72 (73)
T ss_pred CCcccCEEEECCEEEec----CCHHHHHhh
Confidence 88999999999988876 355555443
No 201
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=82.84 E-value=0.79 Score=30.66 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=21.7
Q ss_pred EEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 57 EAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
.+|+-..||+|......+++. ++.+..+.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~d 30 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK------GVTFTEIR 30 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc------CCCcEEEE
Confidence 469999999999988888753 25555554
No 202
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=82.63 E-value=1.1 Score=29.34 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=21.9
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
|.+|+-..||+|.+....|++ + ++.+..+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----~--~i~~~~~~ 32 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----N--GISYEEIP 32 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c--CCCcEEEE
Confidence 567999999999999666664 2 35566554
No 203
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=82.53 E-value=4.8 Score=32.10 Aligned_cols=28 Identities=0% Similarity=-0.033 Sum_probs=25.1
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHH
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQ 79 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~ 79 (238)
+++.+|. |+--.||.|..-+|.+.++.+
T Consensus 59 GKV~lvn-~~Aswc~~c~~e~P~l~~l~~ 86 (184)
T TIGR01626 59 GKVRVVH-HIAGRTSAKEXNASLIDAIKA 86 (184)
T ss_pred CCEEEEE-EEecCCChhhccchHHHHHHH
Confidence 5788898 999999999999999999965
No 204
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=82.48 E-value=1.7 Score=28.53 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=19.3
Q ss_pred cCCccccceEEEcCE-EcCCCCCCCCHhhHHH
Q 026422 187 TRGVYATPTFFVNGF-SLAGAGSPLDYNGWRK 217 (238)
Q Consensus 187 ~~gV~gtPt~~vnG~-~~~~~~~~~~~e~~~~ 217 (238)
..|..++|++++||+ .+.| .+.+.|.+
T Consensus 43 ~~g~~~vP~v~~~g~~~~~G----~~~~~~~~ 70 (72)
T TIGR02194 43 AQGFRQVPVIVADGDLSWSG----FRPDKLKA 70 (72)
T ss_pred HcCCcccCEEEECCCcEEec----cCHHHHHh
Confidence 459999999999887 4443 45666544
No 205
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=82.42 E-value=2.5 Score=30.60 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.6
Q ss_pred HHHhcCCccccceEEE--cCEEc
Q 026422 183 KFSATRGVYATPTFFV--NGFSL 203 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~ 203 (238)
..+.+++|.++||+++ ||+.+
T Consensus 66 ~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 66 FLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred HHHHHCCCccCCEEEEEECCEEE
Confidence 3578999999999976 88865
No 206
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=82.34 E-value=2.7 Score=28.54 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=15.3
Q ss_pred CccccceEEEcCEEcCC
Q 026422 189 GVYATPTFFVNGFSLAG 205 (238)
Q Consensus 189 gV~gtPt~~vnG~~~~~ 205 (238)
|.+.+|.+||||+.+.|
T Consensus 50 g~~tvP~I~i~~~~igg 66 (80)
T COG0695 50 GQRTVPQIFIGGKHVGG 66 (80)
T ss_pred CCCCcCEEEECCEEEeC
Confidence 99999999999997754
No 207
>PRK10329 glutaredoxin-like protein; Provisional
Probab=82.27 E-value=1.2 Score=30.34 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=17.2
Q ss_pred EEEeeCCCCchhhhhchhHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQ 76 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~ 76 (238)
|.+|+...||+|......|++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~ 23 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES 23 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH
Confidence 557999999999998777744
No 208
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=82.17 E-value=1.1 Score=30.08 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=23.3
Q ss_pred eEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 54 IIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 54 ~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
..|.+|+-..||+|.+....|++. ++.|+.+.
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~id 39 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIP 39 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEE
Confidence 345579999999999988877643 36566654
No 209
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=81.70 E-value=3.2 Score=27.59 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=17.5
Q ss_pred HhcCCccccceEEEcCEEcCC
Q 026422 185 SATRGVYATPTFFVNGFSLAG 205 (238)
Q Consensus 185 a~~~gV~gtPt~~vnG~~~~~ 205 (238)
....|+.++|++++||+.+.|
T Consensus 46 ~~~~g~~~~P~v~~~g~~igg 66 (82)
T cd03419 46 QELTGQRTVPNVFIGGKFIGG 66 (82)
T ss_pred HHHhCCCCCCeEEECCEEEcC
Confidence 345689999999999999854
No 210
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=81.61 E-value=1.2 Score=30.94 Aligned_cols=34 Identities=15% Similarity=0.014 Sum_probs=23.1
Q ss_pred HhcCCccccceEEE--cCE--EcCCCCCCCCHhhHHHH
Q 026422 185 SATRGVYATPTFFV--NGF--SLAGAGSPLDYNGWRKV 218 (238)
Q Consensus 185 a~~~gV~gtPt~~v--nG~--~~~~~~~~~~~e~~~~~ 218 (238)
...+++.++||+++ +|+ ......|..+.+++.++
T Consensus 66 ~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~f 103 (104)
T cd02995 66 PSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKF 103 (104)
T ss_pred hhhccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhh
Confidence 45678899999986 565 33334566777776654
No 211
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.37 E-value=2.3 Score=39.40 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=30.4
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
++..|++|..+.||||...-..+.++..+.+ +|.....
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~i 154 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMI 154 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEE
Confidence 4667889999999999998888888887766 5665543
No 212
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=81.31 E-value=1.9 Score=36.30 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=32.0
Q ss_pred HhcCCccccceEEE---c-CEEcCCCCCCCCHhhHHHHHHHhhhhc
Q 026422 185 SATRGVYATPTFFV---N-GFSLAGAGSPLDYNGWRKVIDPLLSEK 226 (238)
Q Consensus 185 a~~~gV~gtPt~~v---n-G~~~~~~~~~~~~e~~~~~i~~ll~~~ 226 (238)
+.++||.-||++++ + ++......|..|.+++.+.|..++..-
T Consensus 206 a~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 206 AQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred HHhcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 56778888999975 3 555555568899999999888877665
No 213
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=81.21 E-value=0.98 Score=38.61 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=23.4
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHH
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQ 79 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~ 79 (238)
...-.|+ |+-+.|.||++++|...++--
T Consensus 43 ddiW~Vd-FYAPWC~HCKkLePiWdeVG~ 70 (468)
T KOG4277|consen 43 DDIWFVD-FYAPWCAHCKKLEPIWDEVGH 70 (468)
T ss_pred CCeEEEE-eechhhhhcccccchhHHhCc
Confidence 4567799 999999999999999887643
No 214
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=80.99 E-value=2.7 Score=30.30 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=27.1
Q ss_pred EEEEeeCCCCchhhhhc-hhHHHHH--HHhCCcEEEEEEec
Q 026422 55 IIEAFFDPVCPDSRDAW-PPLKQAL--QHYGPHVSLVVHLL 92 (238)
Q Consensus 55 ~ve~f~D~~Cp~C~~~~-~~l~~~~--~~~~~~v~~~~~~~ 92 (238)
.|++|+-=.||+|.+|- ..+.... .++.+.++++++++
T Consensus 2 ~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~ 42 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPF 42 (108)
T ss_pred EEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEE
Confidence 47789999999999874 4555533 45666788887744
No 215
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=80.95 E-value=1.4 Score=40.94 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=25.0
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHh
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHY 81 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~ 81 (238)
+...|| |+.-.|+||.++.|+++++.+..
T Consensus 58 ~~~lVE-Fy~swCGhCr~FAPtfk~~A~dl 86 (606)
T KOG1731|consen 58 KAKLVE-FYNSWCGHCRAFAPTFKKFAKDL 86 (606)
T ss_pred hhHHHH-HHHhhhhhhhhcchHHHHHHHHH
Confidence 467899 88999999999999999887753
No 216
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=80.75 E-value=0.53 Score=34.02 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.5
Q ss_pred HHHhcCCccccceEEE--cCEEcC
Q 026422 183 KFSATRGVYATPTFFV--NGFSLA 204 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~ 204 (238)
..+.++||.++||+++ ||+.+.
T Consensus 67 ~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 67 FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred HHHHhcCCCcCCEEEEEECCEEEE
Confidence 5578999999999976 898764
No 217
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.59 E-value=1.4 Score=38.80 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=28.9
Q ss_pred HHhcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHH
Q 026422 184 FSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 184 ~a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
..+..+|.++||+|+||+.+- +|..+.|++...|+.
T Consensus 161 Evear~IMaVPtvflnGe~fg--~GRmtleeilaki~~ 196 (520)
T COG3634 161 EVEARNIMAVPTVFLNGEEFG--QGRMTLEEILAKIDT 196 (520)
T ss_pred HHHhccceecceEEEcchhhc--ccceeHHHHHHHhcC
Confidence 347789999999999999984 567888887666654
No 218
>PRK10638 glutaredoxin 3; Provisional
Probab=80.50 E-value=1.4 Score=29.93 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=17.5
Q ss_pred EEEeeCCCCchhhhhchhHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQ 76 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~ 76 (238)
|.+|+-..||||.+....+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~ 24 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS 24 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 557999999999988777764
No 219
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=80.25 E-value=1.4 Score=29.89 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=21.8
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
|.+|.=..||||.+....|.+. .+.|..+..
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~ 33 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDV 33 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEe
Confidence 4569999999999987777633 355665543
No 220
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=80.17 E-value=1.6 Score=31.88 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=24.1
Q ss_pred hcCCccccceEEE--cCEEcCCCCCCCCHhhHHH
Q 026422 186 ATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRK 217 (238)
Q Consensus 186 ~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~ 217 (238)
.+++|.|.||+++ ||+......|..+.+++..
T Consensus 78 ~~~~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 78 KQKHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred HhcCCcccCEEEEEECCccceEEeCCCCHHHHHh
Confidence 5789999999975 7876555566777777654
No 221
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=80.07 E-value=2.6 Score=39.68 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=30.9
Q ss_pred HHHhcCCccccceEEE---cCEEc--CCCCCCCCHhhHHHHHHHhh
Q 026422 183 KFSATRGVYATPTFFV---NGFSL--AGAGSPLDYNGWRKVIDPLL 223 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v---nG~~~--~~~~~~~~~e~~~~~i~~ll 223 (238)
+.++++||.|+||+++ ||+.+ ....|..+.+++.+.|+++.
T Consensus 525 ~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 525 ALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 3567899999999976 57764 23356788999999888753
No 222
>PRK10329 glutaredoxin-like protein; Provisional
Probab=79.89 E-value=4.3 Score=27.53 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=24.8
Q ss_pred cCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHH
Q 026422 187 TRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 187 ~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
..|..++|++++||..+.| +..+.|.+++..
T Consensus 45 ~~g~~~vPvv~i~~~~~~G----f~~~~l~~~~~~ 75 (81)
T PRK10329 45 AQGFRQLPVVIAGDLSWSG----FRPDMINRLHPA 75 (81)
T ss_pred HcCCCCcCEEEECCEEEec----CCHHHHHHHHHh
Confidence 3589999999999988876 578888777643
No 223
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=79.68 E-value=2.5 Score=35.82 Aligned_cols=44 Identities=7% Similarity=-0.051 Sum_probs=31.8
Q ss_pred HHHHhcCCccccceEEE-c--CEEc-CCCCCCCCHhhHHHHHHHhhhh
Q 026422 182 FKFSATRGVYATPTFFV-N--GFSL-AGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 182 ~~~a~~~gV~gtPt~~v-n--G~~~-~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
...+.++||.++||+++ + |+.+ ....|..+.+++.+.|..+...
T Consensus 219 ~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~~ 266 (271)
T TIGR02740 219 AGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAHP 266 (271)
T ss_pred HHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 34578899999999976 3 4433 2234678999999988877663
No 224
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=79.60 E-value=3.4 Score=30.58 Aligned_cols=40 Identities=3% Similarity=0.100 Sum_probs=29.6
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCC-cEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~ 90 (238)
+++.+|.+|....||.|....+.+.++.+++.+ ++.++..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~i 63 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGV 63 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 357778744478999999999999998888753 4555544
No 225
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=79.32 E-value=1.4 Score=31.86 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=22.5
Q ss_pred EEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 57 EAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
.+|.-..||+|++....+++- ++.|.++++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi 31 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDI 31 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecc
Confidence 479999999999987666542 366777754
No 226
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=79.29 E-value=3 Score=27.34 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=19.3
Q ss_pred hcCCccccceEEEcCEEcCCCCCCCCHhhHHH
Q 026422 186 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRK 217 (238)
Q Consensus 186 ~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~ 217 (238)
+..|-.++|++++||+.+-| ++++.+
T Consensus 45 ~~~g~~~vP~v~i~~~~iGg------~~~~~~ 70 (73)
T cd03027 45 ERTGSSVVPQIFFNEKLVGG------LTDLKS 70 (73)
T ss_pred HHhCCCCcCEEEECCEEEeC------HHHHHh
Confidence 33566889999999998854 566654
No 227
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=79.11 E-value=2.4 Score=34.32 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=29.2
Q ss_pred HhcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 185 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 185 a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
+-+.||-+||++|+||+.+.+ +..++++++.+|..-
T Consensus 52 ~~~~~V~SvP~Vf~DGel~~~--dpVdp~~ies~~~G~ 87 (265)
T COG5494 52 AFEKGVISVPSVFIDGELVYA--DPVDPEEIESILSGQ 87 (265)
T ss_pred HhhcceeecceEEEcCeEEEc--CCCCHHHHHHHHcCc
Confidence 466789999999999999864 358899988877653
No 228
>smart00594 UAS UAS domain.
Probab=78.92 E-value=4 Score=29.92 Aligned_cols=38 Identities=5% Similarity=-0.050 Sum_probs=27.2
Q ss_pred HHHHhcCCccccceEEE---cC-E----EcCCCCCCCCHhhHHHHH
Q 026422 182 FKFSATRGVYATPTFFV---NG-F----SLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 182 ~~~a~~~gV~gtPt~~v---nG-~----~~~~~~~~~~~e~~~~~i 219 (238)
.+.+..++++|+|++++ +| . .+.-..|..+.+++...|
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 45778899999999975 34 2 233356778888887655
No 229
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=78.63 E-value=1.5 Score=31.26 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=21.8
Q ss_pred EEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 57 EAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
.+|.-..||+|++....+++. ++.|.++.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi 31 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDY 31 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEee
Confidence 479999999999986655543 366666654
No 230
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=78.51 E-value=4.7 Score=29.88 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=17.4
Q ss_pred CCceEEEEeeCCCCchhhhhch
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWP 72 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~ 72 (238)
.++++|. |..-.|++|+.+.+
T Consensus 15 ~KpVll~-f~a~WC~~Ck~me~ 35 (124)
T cd02955 15 DKPIFLS-IGYSTCHWCHVMEH 35 (124)
T ss_pred CCeEEEE-EccCCCHhHHHHHH
Confidence 4678887 88999999998875
No 231
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=78.35 E-value=5 Score=29.57 Aligned_cols=39 Identities=0% Similarity=-0.157 Sum_probs=28.6
Q ss_pred ceEEEEeeCCCCc--hhh--hhchhHHHHHHHh--CCcEEEEEEe
Q 026422 53 AIIIEAFFDPVCP--DSR--DAWPPLKQALQHY--GPHVSLVVHL 91 (238)
Q Consensus 53 ~~~ve~f~D~~Cp--~C~--~~~~~l~~~~~~~--~~~v~~~~~~ 91 (238)
..+|..|....|+ ||+ ...|.+.++..++ .++++|.-.+
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD 72 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVD 72 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEe
Confidence 3444447777775 599 8889999999988 7777766654
No 232
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=77.92 E-value=1.9 Score=27.65 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=16.8
Q ss_pred EEEeeCCCCchhhhhchhHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQ 76 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~ 76 (238)
|.+|....||+|....+.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~ 22 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE 22 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH
Confidence 456999999999998776654
No 233
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.90 E-value=3.4 Score=36.73 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=28.2
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhC--CcEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG--PHVSLV 88 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~--~~v~~~ 88 (238)
...+|+ |+++.|+||+.+.|.+.++...+. +.+.+.
T Consensus 163 ~~~lv~-f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~ 200 (383)
T KOG0191|consen 163 ADWLVE-FYAPWCGHCKKLAPEWEKLAKLLKSKENVELG 200 (383)
T ss_pred cceEEE-EeccccHHhhhcChHHHHHHHHhccCcceEEE
Confidence 456777 999999999999999998887664 344444
No 234
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=76.90 E-value=2.5 Score=30.55 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=23.5
Q ss_pred HHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHH
Q 026422 184 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKV 218 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~ 218 (238)
.++.+||.++|+++| +|+......|..+.+++.+.
T Consensus 85 ~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 85 ISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred HHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 467889999999976 23333334566788877553
No 235
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=76.88 E-value=5.1 Score=27.66 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.7
Q ss_pred cCCccccceEEEcCEEcCC
Q 026422 187 TRGVYATPTFFVNGFSLAG 205 (238)
Q Consensus 187 ~~gV~gtPt~~vnG~~~~~ 205 (238)
..|-..+|++||||+.+-|
T Consensus 58 ~~g~~tvP~vfi~g~~iGG 76 (90)
T cd03028 58 YSNWPTFPQLYVNGELVGG 76 (90)
T ss_pred HhCCCCCCEEEECCEEEeC
Confidence 3477889999999999854
No 236
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=76.86 E-value=5.6 Score=30.79 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=34.5
Q ss_pred HHHhcCCccccceEEE---cCEEcCC--C-------CCCCCHhhHHHHHHHhhhhcCCCCC
Q 026422 183 KFSATRGVYATPTFFV---NGFSLAG--A-------GSPLDYNGWRKVIDPLLSEKGKKRE 231 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v---nG~~~~~--~-------~~~~~~e~~~~~i~~ll~~~~~~~~ 231 (238)
..++.+||.++|+++| ||+.+.. . .+..+.+++.++|+.++....-+.+
T Consensus 100 ~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 160 (171)
T cd02969 100 EVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVP 160 (171)
T ss_pred HHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCcc
Confidence 4567889999997765 5765421 0 1234668899999999988776665
No 237
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=76.76 E-value=5.5 Score=28.14 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.7
Q ss_pred HhcCCccccceEEEcCEEcCC
Q 026422 185 SATRGVYATPTFFVNGFSLAG 205 (238)
Q Consensus 185 a~~~gV~gtPt~~vnG~~~~~ 205 (238)
.+..|...+|.+||||+.+-|
T Consensus 54 ~~~tg~~tvP~Vfi~g~~iGG 74 (99)
T TIGR02189 54 SRLGCSPAVPAVFVGGKLVGG 74 (99)
T ss_pred HHhcCCCCcCeEEECCEEEcC
Confidence 445689999999999999865
No 238
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=76.75 E-value=4.8 Score=26.23 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=15.7
Q ss_pred hcCCcc-ccceEEEcCEEcCC
Q 026422 186 ATRGVY-ATPTFFVNGFSLAG 205 (238)
Q Consensus 186 ~~~gV~-gtPt~~vnG~~~~~ 205 (238)
...|.. ++|+++|||+.+-|
T Consensus 44 ~~~~~~~~vP~v~i~g~~igg 64 (75)
T cd03418 44 NRSGGRRTVPQIFIGDVHIGG 64 (75)
T ss_pred HHhCCCCccCEEEECCEEEeC
Confidence 344655 99999999999854
No 239
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=76.58 E-value=3.3 Score=31.43 Aligned_cols=40 Identities=8% Similarity=0.110 Sum_probs=29.4
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCC-cEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~ 90 (238)
.++.+|.+|....||+|....+.+.++.+++.+ +++++-.
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~I 70 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGI 70 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 457888755567899999988888888888753 4655544
No 240
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=76.14 E-value=1.7 Score=31.78 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=28.8
Q ss_pred cCCccc--cceEEE---cCEEcC---CCCCCCCHhhHHHHHHHhhhh
Q 026422 187 TRGVYA--TPTFFV---NGFSLA---GAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 187 ~~gV~g--tPt~~v---nG~~~~---~~~~~~~~e~~~~~i~~ll~~ 225 (238)
.+++.| +||+++ +|+.+. +..|++..++|...|+.+.+.
T Consensus 69 ~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~~ 115 (117)
T cd02959 69 EFSPDGGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQVTES 115 (117)
T ss_pred hcccCCCccceEEEECCCCCCchhhccCCCCccccccCCCHHHHHhh
Confidence 566766 999976 677743 566778888888888777654
No 241
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=76.08 E-value=5 Score=29.37 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=21.3
Q ss_pred HHHHHHhcCCccccceEEEcCEEcC
Q 026422 180 VSFKFSATRGVYATPTFFVNGFSLA 204 (238)
Q Consensus 180 ~~~~~a~~~gV~gtPt~~vnG~~~~ 204 (238)
+....|-.+||+..|.++||++++.
T Consensus 71 qgv~~Aw~lgi~k~PAVVfD~~~VV 95 (114)
T PF07511_consen 71 QGVVDAWSLGITKYPAVVFDDRYVV 95 (114)
T ss_pred HHHHHHHHhCccccCEEEEcCCeEE
Confidence 3455678999999999999999986
No 242
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=75.99 E-value=1.8 Score=29.26 Aligned_cols=23 Identities=13% Similarity=0.403 Sum_probs=19.0
Q ss_pred CCceEEEEeeCCCCchhhhhchhH
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPL 74 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l 74 (238)
.+++.|. |..-.|++|..+...+
T Consensus 17 ~kpvlv~-f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 17 GKPVLVD-FGADWCPPCKKLEREV 39 (82)
T ss_dssp TSEEEEE-EETTTTHHHHHHHHHT
T ss_pred CCCEEEE-EECCCCHhHHHHHHHH
Confidence 3678887 8999999999987544
No 243
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=75.84 E-value=5.3 Score=29.63 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=15.1
Q ss_pred cCCccccceEEE---cCEEcCC
Q 026422 187 TRGVYATPTFFV---NGFSLAG 205 (238)
Q Consensus 187 ~~gV~gtPt~~v---nG~~~~~ 205 (238)
.+|+.|+||+++ +|+.+.+
T Consensus 75 ~~~~~G~Pt~vfl~~~G~~~~~ 96 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLKPFFG 96 (124)
T ss_pred hcCCCCCCEEEEECCCCCEEee
Confidence 568999999986 6887743
No 244
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=75.72 E-value=4.5 Score=30.26 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=28.9
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCC-cEEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~ 90 (238)
++++|.+|....||.|....+.+.++.+++.+ +++++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~v 68 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGI 68 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 56677634377899999999999999988863 4655544
No 245
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=75.59 E-value=2.2 Score=31.11 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=22.8
Q ss_pred EEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 57 EAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
.+|.-..||+|++....+++- ++.|+++++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi 31 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDI 31 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEec
Confidence 469999999999987766652 466777754
No 246
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=73.95 E-value=2.8 Score=32.28 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=19.3
Q ss_pred CccccceEEE--cCEEcCCCC-----------CCCCHhhHHHHH
Q 026422 189 GVYATPTFFV--NGFSLAGAG-----------SPLDYNGWRKVI 219 (238)
Q Consensus 189 gV~gtPt~~v--nG~~~~~~~-----------~~~~~e~~~~~i 219 (238)
||.++||+++ ||+.+.... +.+|.|++...+
T Consensus 105 ~v~~~PT~ilf~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 105 LSKQLPTIILFQGGKEVARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred CcCCCCEEEEEECCEEEEEEeccccCccccccccccHHHHHHhc
Confidence 3444999976 888764222 356777765543
No 247
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=73.57 E-value=2.6 Score=30.80 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=21.6
Q ss_pred HHHhcCCccccc-eEEE--cCEEcCCCCCCCCHhh
Q 026422 183 KFSATRGVYATP-TFFV--NGFSLAGAGSPLDYNG 214 (238)
Q Consensus 183 ~~a~~~gV~gtP-t~~v--nG~~~~~~~~~~~~e~ 214 (238)
..+..+||.++| +++| +|+.+....|..+.+.
T Consensus 91 ~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 91 RVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred hHHHhcCCCCCCeEEEECCCceEEEEEeccCChHh
Confidence 356789999999 5666 5776644445566554
No 248
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=73.56 E-value=4.5 Score=25.60 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.4
Q ss_pred HhcCCccccceEEEcCEEcCC
Q 026422 185 SATRGVYATPTFFVNGFSLAG 205 (238)
Q Consensus 185 a~~~gV~gtPt~~vnG~~~~~ 205 (238)
....|...+|++++||+.+.|
T Consensus 43 ~~~~~~~~~P~~~~~~~~igg 63 (72)
T cd02066 43 KELSGWPTVPQIFINGEFIGG 63 (72)
T ss_pred HHHhCCCCcCEEEECCEEEec
Confidence 445678999999999999865
No 249
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=73.50 E-value=5.2 Score=31.05 Aligned_cols=39 Identities=5% Similarity=0.003 Sum_probs=29.4
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~ 90 (238)
+++++|.+|-...||.|..-.+.+.++.+++. +++++-.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~v 82 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCI 82 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEE
Confidence 35778886666679999999999999888874 5554443
No 250
>PRK10638 glutaredoxin 3; Provisional
Probab=72.97 E-value=7.1 Score=26.30 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=17.5
Q ss_pred HhcCCccccceEEEcCEEcCC
Q 026422 185 SATRGVYATPTFFVNGFSLAG 205 (238)
Q Consensus 185 a~~~gV~gtPt~~vnG~~~~~ 205 (238)
.+..|...+|++++||+.+-|
T Consensus 45 ~~~~g~~~vP~i~~~g~~igG 65 (83)
T PRK10638 45 IKRSGRTTVPQIFIDAQHIGG 65 (83)
T ss_pred HHHhCCCCcCEEEECCEEEeC
Confidence 455688999999999999965
No 251
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=72.06 E-value=7.6 Score=27.31 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.3
Q ss_pred CCccccceEEEcCEEcCC
Q 026422 188 RGVYATPTFFVNGFSLAG 205 (238)
Q Consensus 188 ~gV~gtPt~~vnG~~~~~ 205 (238)
.|...+|.+||||+.+-|
T Consensus 63 tg~~tvP~vfi~g~~iGG 80 (97)
T TIGR00365 63 SNWPTIPQLYVKGEFVGG 80 (97)
T ss_pred hCCCCCCEEEECCEEEeC
Confidence 467899999999999855
No 252
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=71.81 E-value=6.9 Score=26.56 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=25.7
Q ss_pred cccceEEEcCEEcCCCCCCCCHhhHHHHHHHhhhhc
Q 026422 191 YATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 226 (238)
Q Consensus 191 ~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ll~~~ 226 (238)
.-.|..+|||+.+.+ -|.|++.+.|.+.+++.
T Consensus 44 ~~~pFAlVnG~~V~A----~t~eeL~~kI~~~i~e~ 75 (78)
T PF07293_consen 44 AKKPFALVNGEIVAA----ETAEELLEKIKEKIEEN 75 (78)
T ss_pred CCCccEEECCEEEec----CCHHHHHHHHHHHHhcc
Confidence 346788999999986 58899988888877664
No 253
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=71.53 E-value=8.4 Score=28.14 Aligned_cols=44 Identities=5% Similarity=0.054 Sum_probs=33.7
Q ss_pred HHHHhcCCccccceEEE----cCEE--cCCCCCCCCHhhHHHHHHHhhhh
Q 026422 182 FKFSATRGVYATPTFFV----NGFS--LAGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 182 ~~~a~~~gV~gtPt~~v----nG~~--~~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
.+.+..++++++|++.+ +++. +....|..+.+++...|..+..+
T Consensus 66 ~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 66 YRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred HHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 66789999999999964 4442 33356789999999998887654
No 254
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=70.78 E-value=5.1 Score=30.88 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=25.4
Q ss_pred CccccceEEE---cCEE-cCCCCCCCCHhhHHHHHHHhh
Q 026422 189 GVYATPTFFV---NGFS-LAGAGSPLDYNGWRKVIDPLL 223 (238)
Q Consensus 189 gV~gtPt~~v---nG~~-~~~~~~~~~~e~~~~~i~~ll 223 (238)
||.++||.++ +|+. .....|..+.+++.+.|+.++
T Consensus 115 ~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 115 RPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 7899999975 4443 322356789999998888764
No 255
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=70.73 E-value=10 Score=28.29 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=34.7
Q ss_pred HHhcCCcc--ccceEEE-c---CEEcCCCCCCCCHhhHHHHHHHhhhhcCCCCC
Q 026422 184 FSATRGVY--ATPTFFV-N---GFSLAGAGSPLDYNGWRKVIDPLLSEKGKKRE 231 (238)
Q Consensus 184 ~a~~~gV~--gtPt~~v-n---G~~~~~~~~~~~~e~~~~~i~~ll~~~~~~~~ 231 (238)
..+.+||. ++|++++ | |+|.. ..|..+.|++.++++..+....+..+
T Consensus 71 ~~~~fgl~~~~~P~v~i~~~~~~KY~~-~~~~~t~e~i~~Fv~~~l~Gkl~~~~ 123 (130)
T cd02983 71 LEEALNIGGFGYPAMVAINFRKMKFAT-LKGSFSEDGINEFLRELSYGRGPTLP 123 (130)
T ss_pred HHHHcCCCccCCCEEEEEecccCcccc-ccCccCHHHHHHHHHHHHcCCccccc
Confidence 46778884 5999986 2 35543 45678999999999999988764433
No 256
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=70.48 E-value=5.6 Score=25.85 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=19.8
Q ss_pred cCCccccceEEE-cCEEcCCCCCCCCHhhHHHHH
Q 026422 187 TRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 187 ~~gV~gtPt~~v-nG~~~~~~~~~~~~e~~~~~i 219 (238)
..|+.++|++++ ||+.+.. .+..++.+.|
T Consensus 46 ~~~~~~vP~i~~~~g~~l~~----~~~~~~~~~l 75 (77)
T TIGR02200 46 NNGNMTVPTVKFADGSFLTN----PSAAQVKAKL 75 (77)
T ss_pred hCCCceeCEEEECCCeEecC----CCHHHHHHHh
Confidence 358999999987 5666654 3556665554
No 257
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=70.03 E-value=4 Score=29.41 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=25.5
Q ss_pred HHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHH
Q 026422 183 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
..+.+.+|.++|||++ ||+.+...-| ...+++++.|..
T Consensus 65 ~~~~~~~V~~~PTf~f~k~g~~~~~~vG-a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 65 EVAKEFNVKAMPTFVFYKGGEEVDEVVG-ANKAELEKKIAK 104 (106)
T ss_pred hHHHhcCceEeeEEEEEECCEEEEEEec-CCHHHHHHHHHh
Confidence 4578999999999975 8887643322 345566555543
No 258
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=69.88 E-value=3.5 Score=30.95 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=18.7
Q ss_pred CCceEEEEeeCCCCchhhhhchhH
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPL 74 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l 74 (238)
.+++.|. |..-.||+|+.+.+..
T Consensus 23 ~Kpvmv~-f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 23 NKPLMVI-HHLEDCPHSQALKKAF 45 (130)
T ss_pred CCeEEEE-EeCCcCHhHHHHHHHh
Confidence 4678887 8888999999987643
No 259
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=69.65 E-value=6.1 Score=31.44 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=29.1
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccc
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPL 94 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl 94 (238)
++++|. |+.-.|+.|.. .+.|.++.++|+++ .+++.-+|.
T Consensus 26 KvvLVv-f~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~ 65 (183)
T PRK10606 26 NVLLIV-NVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPC 65 (183)
T ss_pred CEEEEE-EEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeec
Confidence 567776 89999999975 78999999999742 244444444
No 260
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=69.50 E-value=3.6 Score=29.59 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=17.7
Q ss_pred EeeCCCCchhhhhchhHHHH
Q 026422 58 AFFDPVCPDSRDAWPPLKQA 77 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~~~ 77 (238)
+|+|=.||.|...-..+.+.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~ 20 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRR 20 (114)
T ss_pred CEECCCCHhHHHHHHHHHhc
Confidence 58999999999998888776
No 261
>PRK13669 hypothetical protein; Provisional
Probab=68.87 E-value=9.5 Score=25.86 Aligned_cols=31 Identities=23% Similarity=0.082 Sum_probs=25.4
Q ss_pred cccceEEEcCEEcCCCCCCCCHhhHHHHHHHhhhh
Q 026422 191 YATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 191 ~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
.-.|.-+|||+.+.+ -+.|++.+.|.+.++.
T Consensus 44 ~~~~FAlVng~~V~a----~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 44 SEGLFALVNGEVVEG----ETPEELVENIYAHLEE 74 (78)
T ss_pred ccCceEEECCeEeec----CCHHHHHHHHHHHHhh
Confidence 446888999999986 5889988888887766
No 262
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=68.55 E-value=3.8 Score=28.88 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=12.7
Q ss_pred CCCchhhhhchhHHHH
Q 026422 62 PVCPDSRDAWPPLKQA 77 (238)
Q Consensus 62 ~~Cp~C~~~~~~l~~~ 77 (238)
..||||.+....+.+.
T Consensus 25 ~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 25 PQCGFSARAVQILKAC 40 (97)
T ss_pred CCCchHHHHHHHHHHc
Confidence 7899999887776654
No 263
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=68.55 E-value=12 Score=27.25 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=21.3
Q ss_pred HHHHHHhcCCccccceEEEcCEEcC
Q 026422 180 VSFKFSATRGVYATPTFFVNGFSLA 204 (238)
Q Consensus 180 ~~~~~a~~~gV~gtPt~~vnG~~~~ 204 (238)
+..-.|-.+||+..|.++||++++.
T Consensus 72 qgv~~Aw~lGi~k~PAVV~D~~~VV 96 (113)
T TIGR03757 72 QGVADAWQLGVTKIPAVVVDRRYVV 96 (113)
T ss_pred HHHHHHHHcCCccCCEEEEcCCeEE
Confidence 3445678999999999999999986
No 264
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=68.33 E-value=5.9 Score=36.46 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=32.0
Q ss_pred HHHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHhhhh
Q 026422 182 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 182 ~~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
..++.+++|+|.||+-| ||+....+.|..+.+.+..++.+-.+.
T Consensus 89 ~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 89 SDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGP 134 (493)
T ss_pred hhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCC
Confidence 34578999999999954 999633456778888877766655443
No 265
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=67.51 E-value=8.2 Score=36.41 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=26.8
Q ss_pred CCceEEEEeeCCCCchhhhhchhH---HHHHHHhCCcEEEE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPL---KQALQHYGPHVSLV 88 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l---~~~~~~~~~~v~~~ 88 (238)
.++++|+ |+-..|++|+.+++.. .++.+++. ++.+.
T Consensus 474 gK~VlVd-F~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v 512 (571)
T PRK00293 474 GKPVMLD-LYADWCVACKEFEKYTFSDPQVQQALA-DTVLL 512 (571)
T ss_pred CCcEEEE-EECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEE
Confidence 4688898 9999999999998864 46666665 44443
No 266
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=67.50 E-value=9.9 Score=30.22 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=24.3
Q ss_pred EEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 55 IIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 55 ~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
+|. |+--.||+|++..|.+.++.++|+
T Consensus 73 lV~-FwaswCp~C~~e~P~L~~l~~~~g 99 (181)
T PRK13728 73 VVL-FMQGHCPYCHQFDPVLKQLAQQYG 99 (181)
T ss_pred EEE-EECCCCHhHHHHHHHHHHHHHHcC
Confidence 565 888999999999999999999985
No 267
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=67.45 E-value=4.9 Score=28.40 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhc
Q 026422 9 NHATLILQSALLCFFVFNSCS 29 (238)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (238)
|+++++|++++.+++++.+.+
T Consensus 3 SK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 566777776655554444433
No 268
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=66.70 E-value=7.3 Score=30.66 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=25.7
Q ss_pred HHHhcCCccccceEEE--cCEEcC---CC----CCCCCHhhHHHHHH
Q 026422 183 KFSATRGVYATPTFFV--NGFSLA---GA----GSPLDYNGWRKVID 220 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v--nG~~~~---~~----~~~~~~e~~~~~i~ 220 (238)
..+.+++|.++|||++ ||+.+. |. +...+.++++.+|.
T Consensus 126 ~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 126 GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 4678899999999986 898763 21 12455666655543
No 269
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=66.61 E-value=5.8 Score=28.24 Aligned_cols=32 Identities=13% Similarity=0.005 Sum_probs=19.8
Q ss_pred cCCccccceEEE--cC-EEcCCCCCC-CCHhhHHHH
Q 026422 187 TRGVYATPTFFV--NG-FSLAGAGSP-LDYNGWRKV 218 (238)
Q Consensus 187 ~~gV~gtPt~~v--nG-~~~~~~~~~-~~~e~~~~~ 218 (238)
.+||.++||+++ +| .......|. .+.+++..+
T Consensus 73 ~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f 108 (109)
T cd02993 73 ELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMF 108 (109)
T ss_pred hcCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhh
Confidence 479999999975 43 333334443 566666543
No 270
>PTZ00062 glutaredoxin; Provisional
Probab=66.49 E-value=7.6 Score=31.48 Aligned_cols=34 Identities=9% Similarity=-0.050 Sum_probs=23.5
Q ss_pred CCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 188 RGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 188 ~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
++|.++|||++ ||+.+....| .+..++...|...
T Consensus 58 ~~V~~vPtfv~~~~g~~i~r~~G-~~~~~~~~~~~~~ 93 (204)
T PTZ00062 58 DANNEYGVFEFYQNSQLINSLEG-CNTSTLVSFIRGW 93 (204)
T ss_pred cCcccceEEEEEECCEEEeeeeC-CCHHHHHHHHHHH
Confidence 99999999986 8888754443 2455555555444
No 271
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=66.17 E-value=5 Score=28.78 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=21.9
Q ss_pred EEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 57 EAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
.+|.-+.|+.|++....+++- ++.|.++.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di 31 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDY 31 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEec
Confidence 469999999999976655533 366777754
No 272
>PRK12559 transcriptional regulator Spx; Provisional
Probab=64.93 E-value=6.7 Score=29.36 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=23.3
Q ss_pred HhcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHH
Q 026422 185 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 185 a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
...-.+---|-++-+|+.+.| ++.|.|..++..
T Consensus 84 ~~~P~LikRPIi~~~~~~~iG----f~~e~~~~~l~~ 116 (131)
T PRK12559 84 IEHPLMLRRPIMLDEKRLQIG----FNDEEIRKFLPR 116 (131)
T ss_pred HhCcceEeCCEEEeCCEEEEc----CCHHHHHHHhhH
Confidence 445557778877778887777 578888877743
No 273
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=64.45 E-value=4.6 Score=25.10 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=13.0
Q ss_pred CCCCchhhhhchhHHHHHHH
Q 026422 61 DPVCPDSRDAWPPLKQALQH 80 (238)
Q Consensus 61 D~~Cp~C~~~~~~l~~~~~~ 80 (238)
+|.||||.+ .-....+...
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H 20 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEH 20 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHH
Confidence 589999999 4444555543
No 274
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=64.36 E-value=13 Score=26.71 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=14.8
Q ss_pred CCccccceEEEcCEEcCC
Q 026422 188 RGVYATPTFFVNGFSLAG 205 (238)
Q Consensus 188 ~gV~gtPt~~vnG~~~~~ 205 (238)
.|.+.+|.+||||+.+-|
T Consensus 63 tg~~tvP~vFI~Gk~iGG 80 (104)
T KOG1752|consen 63 TGQRTVPNVFIGGKFIGG 80 (104)
T ss_pred cCCCCCCEEEECCEEEcC
Confidence 455699999999999943
No 275
>PLN02412 probable glutathione peroxidase
Probab=63.88 E-value=9 Score=29.73 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=28.6
Q ss_pred CccccceEE-E--cCEEcCCCCCCCCHhhHHHHHHHhhhh
Q 026422 189 GVYATPTFF-V--NGFSLAGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 189 gV~gtPt~~-v--nG~~~~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
+|.+.|+.+ | +|+.+....|..+.+++...|+.++..
T Consensus 127 ~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 127 AIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 377788865 5 688776556778999999999998764
No 276
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=63.38 E-value=9.7 Score=25.70 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=21.9
Q ss_pred cccceEEEcCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 191 YATPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 191 ~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
.--|.+.|||+.+.+ .+.+++.++|+++
T Consensus 53 ~~gP~~~v~~~~~~~----~~~e~i~~il~~~ 80 (80)
T cd03081 53 ACSPAAMIDGEVHGR----VDPEKFDALLAEL 80 (80)
T ss_pred CCCCEEEECCEEECC----CCHHHHHHHHHcC
Confidence 346999999998865 5889988887653
No 277
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=63.20 E-value=6.2 Score=25.91 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=20.7
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
|.+|....||+|++..-.+... .+.++.+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~ 31 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVE 31 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC------CCceEEEE
Confidence 4568899999999887665543 35555553
No 278
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=63.02 E-value=7.3 Score=29.18 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=23.5
Q ss_pred HhcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHH
Q 026422 185 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 185 a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
...-.+---|-++-+|+.+.| ++.|+|..++..
T Consensus 84 ~~~P~LikRPIv~~~~~~~iG----~~~e~~~~~l~~ 116 (132)
T PRK13344 84 QENPRILKSPILIDDKRLQVG----YKEDDIRAFLPR 116 (132)
T ss_pred HhCccceeCcEEEeCCEEEeC----CCHHHHHHHccH
Confidence 445556778877667777776 578888888744
No 279
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=61.25 E-value=7.6 Score=28.26 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=21.9
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
|.+|..+.|+.|++....++ +.+ +.|.++.+
T Consensus 2 i~iy~~p~C~~crkA~~~L~----~~g--i~~~~~d~ 32 (113)
T cd03033 2 IIFYEKPGCANNARQKALLE----AAG--HEVEVRDL 32 (113)
T ss_pred EEEEECCCCHHHHHHHHHHH----HcC--CCcEEeeh
Confidence 34699999999997764444 333 67777754
No 280
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=60.15 E-value=12 Score=29.93 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=24.5
Q ss_pred HhcCCccccceE--EE--cCEEcCCCCCCCCHhhHHHHH
Q 026422 185 SATRGVYATPTF--FV--NGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 185 a~~~gV~gtPt~--~v--nG~~~~~~~~~~~~e~~~~~i 219 (238)
+...||.|.|+. +| +|+.+.-..|..+.+++.+++
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 568899999655 56 587665445667888887733
No 281
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=60.08 E-value=6.2 Score=35.57 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=16.4
Q ss_pred EEEeeCCCCchhhhhchhHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQ 76 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~ 76 (238)
|.+|+-..||||.+....+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 557999999999977655543
No 282
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=60.07 E-value=20 Score=27.20 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=18.8
Q ss_pred ceEEEEeeCCCCchhhhhchhHH
Q 026422 53 AIIIEAFFDPVCPDSRDAWPPLK 75 (238)
Q Consensus 53 ~~~ve~f~D~~Cp~C~~~~~~l~ 75 (238)
.+.+.+|.|+.|.=|..+...++
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk 47 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMK 47 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHH
Confidence 45667799999999998877666
No 283
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=59.93 E-value=11 Score=30.27 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=24.3
Q ss_pred HhcCCccccceEEE--cCEEcC---CC----CCCCCHhhHHHHHH
Q 026422 185 SATRGVYATPTFFV--NGFSLA---GA----GSPLDYNGWRKVID 220 (238)
Q Consensus 185 a~~~gV~gtPt~~v--nG~~~~---~~----~~~~~~e~~~~~i~ 220 (238)
+..++|.++|||++ ||+.+. |. +...+.++++..|.
T Consensus 145 ~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 145 IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 57899999999987 888652 21 11456666665553
No 284
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=58.83 E-value=15 Score=31.09 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=29.3
Q ss_pred ceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 53 ~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
.++|- |++..||-|..+...|..+..+|+ .++|+-..
T Consensus 148 ~VVVH-iY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~ 184 (265)
T PF02114_consen 148 WVVVH-IYEPGFPRCEIMNSCLECLARKYP-EVKFVKIR 184 (265)
T ss_dssp EEEEE-EE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEE
T ss_pred EEEEE-EEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEe
Confidence 34555 999999999999999999999999 68877543
No 285
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=58.47 E-value=10 Score=27.68 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=17.6
Q ss_pred HHHHhcCCccccceEEE---cCEEcC
Q 026422 182 FKFSATRGVYATPTFFV---NGFSLA 204 (238)
Q Consensus 182 ~~~a~~~gV~gtPt~~v---nG~~~~ 204 (238)
...++.+||.++|+++| ||+.+.
T Consensus 89 ~~~~~~~~v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDADGEVVT 114 (131)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEc
Confidence 34578899999999976 577653
No 286
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.09 E-value=17 Score=30.50 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=30.0
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcE
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHV 85 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v 85 (238)
.+..+|+ |+--.|+-|+...|.+..+..+|++-|
T Consensus 21 ~k~v~Vd-fta~wCGPCk~IaP~Fs~lankYp~aV 54 (288)
T KOG0908|consen 21 GKLVVVD-FTASWCGPCKRIAPIFSDLANKYPGAV 54 (288)
T ss_pred ceEEEEE-EEecccchHHhhhhHHHHhhhhCcccE
Confidence 3578899 999999999999999999999998643
No 287
>PF13728 TraF: F plasmid transfer operon protein
Probab=57.82 E-value=9.9 Score=31.03 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHHhcCCccccceEEE---cC-EEcCCCCCCCCHhhHHHHH
Q 026422 181 SFKFSATRGVYATPTFFV---NG-FSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 181 ~~~~a~~~gV~gtPt~~v---nG-~~~~~~~~~~~~e~~~~~i 219 (238)
+...+.++||..||++++ ++ +......|..|.+++.+.|
T Consensus 172 ~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 172 DPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 345678999999999985 34 5555556788888876644
No 288
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=57.28 E-value=16 Score=28.29 Aligned_cols=38 Identities=3% Similarity=0.047 Sum_probs=28.5
Q ss_pred CceEEEEee-CCCCchhhhhchhHHHHHHHhCC-cEEEEEE
Q 026422 52 DAIIIEAFF-DPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~-D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~ 90 (238)
++++|. |+ --.||.|....+.+.++.+++.+ +++++..
T Consensus 30 k~vvl~-F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~I 69 (173)
T cd03015 30 KWVVLF-FYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGV 69 (173)
T ss_pred CEEEEE-EECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 567776 55 56799999999999999998863 4655544
No 289
>PRK10824 glutaredoxin-4; Provisional
Probab=55.88 E-value=6.2 Score=28.90 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=13.3
Q ss_pred CccccceEEEcCEEcCC
Q 026422 189 GVYATPTFFVNGFSLAG 205 (238)
Q Consensus 189 gV~gtPt~~vnG~~~~~ 205 (238)
|-..+|.+||||+.+-|
T Consensus 67 g~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 67 NWPTFPQLWVDGELVGG 83 (115)
T ss_pred CCCCCCeEEECCEEEcC
Confidence 55678899999988854
No 290
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=54.94 E-value=19 Score=30.21 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=11.7
Q ss_pred HHHhcCCccccceEEEcCEEcCCC
Q 026422 183 KFSATRGVYATPTFFVNGFSLAGA 206 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~vnG~~~~~~ 206 (238)
..+.++|+.-.| +=+||..+.+.
T Consensus 167 ~fa~~yg~~v~~-VS~DG~~~p~f 189 (248)
T PRK13703 167 DFRDTYGLSVIP-VSVDGVINPLL 189 (248)
T ss_pred HHHHHhCCeEEE-EecCCCCCCCC
Confidence 345666663222 12477766553
No 291
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=54.72 E-value=21 Score=30.04 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=13.0
Q ss_pred HHHhcCCccccceEE--EcCEEcCCCCC
Q 026422 183 KFSATRGVYATPTFF--VNGFSLAGAGS 208 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~--vnG~~~~~~~~ 208 (238)
..+.++|+. .+. +||+.+.+...
T Consensus 174 ~fa~~ygi~---v~~VS~DG~~~p~fp~ 198 (256)
T TIGR02739 174 AFAKEYGIS---VIPISVDGTLIPGLPN 198 (256)
T ss_pred HHHHHhCCe---EEEEecCCCCCCCCCC
Confidence 345666654 444 47887665433
No 292
>PRK10824 glutaredoxin-4; Provisional
Probab=53.36 E-value=27 Score=25.53 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=11.1
Q ss_pred CCCchhhhhchhHHHH
Q 026422 62 PVCPDSRDAWPPLKQA 77 (238)
Q Consensus 62 ~~Cp~C~~~~~~l~~~ 77 (238)
+.||||.+.-..|.+.
T Consensus 28 p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 28 PSCGFSAQAVQALSAC 43 (115)
T ss_pred CCCchHHHHHHHHHHc
Confidence 5888888776655543
No 293
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=53.08 E-value=15 Score=32.27 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=32.9
Q ss_pred HHHHHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHhhhh
Q 026422 181 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 181 ~~~~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
+.+.|+++|+...+++.| +|+.+. +.|..+.+.|..+|-.++..
T Consensus 101 d~klAKKLgv~E~~SiyVfkd~~~IE-ydG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 101 DAKLAKKLGVEEEGSIYVFKDGEVIE-YDGERSADTLVEFLLDLLED 146 (383)
T ss_dssp THHHHHHHT--STTEEEEEETTEEEE-E-S--SHHHHHHHHHHHHSS
T ss_pred HHHHHHhcCccccCcEEEEECCcEEE-ecCccCHHHHHHHHHHhccc
Confidence 456789999999999987 888886 57889999999999888764
No 294
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=52.08 E-value=13 Score=26.99 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.3
Q ss_pred HHhcCCccccceEEE-cC
Q 026422 184 FSATRGVYATPTFFV-NG 200 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v-nG 200 (238)
+.++++|+.+|||++ ++
T Consensus 63 ~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 63 LFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHhhCCceEcCEEEEEcC
Confidence 368899999999987 55
No 295
>PHA03075 glutaredoxin-like protein; Provisional
Probab=51.88 E-value=23 Score=25.95 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.1
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
+.++|- |.-+.|+-|...+..++++.++|.
T Consensus 2 K~tLIL-fGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLIL-FGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEE-eCCcccHHHHHHHHHHHHhhcccc
Confidence 456664 999999999999999999988887
No 296
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=51.07 E-value=30 Score=27.33 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=24.3
Q ss_pred HHhcCCccccceEEE---cCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 184 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v---nG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
.++.+||.++|+.++ +|+.... ....+.+.+.++|+.+
T Consensus 138 i~~~y~v~~~P~~~lID~~G~I~~~-g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 138 IGMAFQVGKIPYGVLLDQDGKIRAK-GLTNTREHLESLLEAD 178 (189)
T ss_pred HHHhccCCccceEEEECCCCeEEEc-cCCCCHHHHHHHHHHH
Confidence 467889999998765 4776542 2224556666666554
No 297
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=50.60 E-value=18 Score=26.88 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=24.4
Q ss_pred HhcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHHhh
Q 026422 185 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL 223 (238)
Q Consensus 185 a~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ll 223 (238)
-.+.|..+-|-++|||+.+.. ..+-+.++|.+++.--.
T Consensus 65 L~~~G~e~LPitlVdGeiv~~-G~YPt~eEl~~~~~i~~ 102 (123)
T PF06953_consen 65 LQTEGAEALPITLVDGEIVKT-GRYPTNEELAEWLGISF 102 (123)
T ss_dssp HHHH-GGG-SEEEETTEEEEE-SS---HHHHHHHHT--G
T ss_pred HHHcCcccCCEEEECCEEEEe-cCCCCHHHHHHHhCCCc
Confidence 467899999999999998853 45778888887765433
No 298
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.11 E-value=6.3 Score=26.52 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.2
Q ss_pred EeeCCCCchhhhhchhHHHH
Q 026422 58 AFFDPVCPDSRDAWPPLKQA 77 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~~~ 77 (238)
+|.+-.||.|+-+-..++++
T Consensus 6 lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 6 LFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeccccCcchHHHHHHHHHc
Confidence 49999999999888877766
No 299
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=49.76 E-value=15 Score=27.53 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.3
Q ss_pred HHhcCCccccceEEE
Q 026422 184 FSATRGVYATPTFFV 198 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v 198 (238)
+.++++|+.+|+|++
T Consensus 63 lF~~f~I~~VPa~V~ 77 (130)
T TIGR02742 63 WFKQFDITAVPAFVV 77 (130)
T ss_pred HHhhcCceEcCEEEE
Confidence 368899999999987
No 300
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=48.96 E-value=21 Score=30.72 Aligned_cols=39 Identities=8% Similarity=0.064 Sum_probs=28.4
Q ss_pred HHhcCCccccceEEE--cCEEcCCCCCCCCHhhHHHHHHHhh
Q 026422 184 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL 223 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v--nG~~~~~~~~~~~~e~~~~~i~~ll 223 (238)
.|.++||+|.||+.+ ||..+ ++.|..+-+++.+.-....
T Consensus 92 iAnefgiqGYPTIk~~kgd~a~-dYRG~R~Kd~iieFAhR~a 132 (468)
T KOG4277|consen 92 IANEFGIQGYPTIKFFKGDHAI-DYRGGREKDAIIEFAHRCA 132 (468)
T ss_pred hHhhhccCCCceEEEecCCeee-ecCCCccHHHHHHHHHhcc
Confidence 478899999999954 55554 5677788888877655443
No 301
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=48.52 E-value=19 Score=26.47 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=16.5
Q ss_pred HHHhcCCccccceEEE---cCEEcC
Q 026422 183 KFSATRGVYATPTFFV---NGFSLA 204 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v---nG~~~~ 204 (238)
..++.+||.|+||++| ||+.+.
T Consensus 90 ~~~~~~~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 90 LLEKQFKVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEc
Confidence 4567799999999985 466553
No 302
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=48.45 E-value=27 Score=23.10 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=19.6
Q ss_pred ccceEEEcCEEcCCCCCCCCHhhHHHHHH
Q 026422 192 ATPTFFVNGFSLAGAGSPLDYNGWRKVID 220 (238)
Q Consensus 192 gtPt~~vnG~~~~~~~~~~~~e~~~~~i~ 220 (238)
.-|++.|||+.+.. .+.+.+.++++
T Consensus 46 ~gP~v~V~~~~~~~----~t~~~i~~~~~ 70 (72)
T cd03082 46 RAPAALVGQRPVDG----ATPAAVAAAVE 70 (72)
T ss_pred CCCeEEECCEEeCC----cCHHHHHHHHh
Confidence 46999999998864 57888777664
No 303
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=47.68 E-value=20 Score=24.48 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhc
Q 026422 9 NHATLILQSALLCFFVFNSCS 29 (238)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (238)
+|+.+||+++++-.++++++.
T Consensus 2 aRRlwiLslLAVtLtVALAAP 22 (100)
T PF05984_consen 2 ARRLWILSLLAVTLTVALAAP 22 (100)
T ss_pred chhhHHHHHHHHHHHHHhhcc
Confidence 477899999988776666555
No 304
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=47.41 E-value=18 Score=27.39 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=16.3
Q ss_pred EEEeeCCCCchhhhhchhHHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQA 77 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~ 77 (238)
..|++|-.||.|...-..+.+.
T Consensus 10 ~vvlyDG~C~lC~~~vrfLi~~ 31 (137)
T COG3011 10 LVVLYDGVCPLCDGWVRFLIRR 31 (137)
T ss_pred EEEEECCcchhHHHHHHHHHHh
Confidence 3359999999999966555443
No 305
>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations
Probab=46.82 E-value=55 Score=29.76 Aligned_cols=96 Identities=18% Similarity=0.350 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHhhHhhhcCCC---CCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCcccc
Q 026422 117 ATFCLLEWFFKQQEKFYNAPT---QNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYAT 193 (238)
Q Consensus 117 ~~~~~~~~lf~~q~~~~~~~~---~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gt 193 (238)
......+.|-+.|..|+..+. +.++. . ++| +.+|+. ...+..+.+ +.-.....|+.-.
T Consensus 293 TL~~v~~~Iv~~Q~~Ff~~G~~~LkPLtl----k---diA-~~lglh-eSTVSRav~----------~Kyi~tp~Gi~~l 353 (429)
T TIGR02395 293 TLLKVAEAIVEHQKDFFLGGPAALKPLTL----R---EVA-EELGLH-ESTISRAIN----------NKYLQTPRGVFEL 353 (429)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCcCCcH----H---HHH-HHhCCC-ccchhhhhc----------CceEecCCceEEH
Confidence 467788888899999997652 22332 2 333 368887 544433332 2233467788877
Q ss_pred ceEEEcCEEcCCCCCCCCHhhHHHHHHHhhhhcCCCCC
Q 026422 194 PTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKRE 231 (238)
Q Consensus 194 Pt~~vnG~~~~~~~~~~~~e~~~~~i~~ll~~~~~~~~ 231 (238)
=.||..|..-...++..|.+.+.+.|..+++.+.++.|
T Consensus 354 k~FFs~~~~~~~~g~~~S~~~Ik~~I~~lI~~E~~~~P 391 (429)
T TIGR02395 354 KYFFSRGVQTDSGEGEVSSTAIKALIKELIAAEDKRKP 391 (429)
T ss_pred HHhcCCccCCCCCCCccCHHHHHHHHHHHHHhcCCCCC
Confidence 77887765322212457999999999999999887754
No 306
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=46.66 E-value=49 Score=18.92 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 026422 9 NHATLILQSALLCFFVFNS 27 (238)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (238)
+|.-+.+|++.+++++++.
T Consensus 15 NRTSLy~GlLlifvl~vLF 33 (39)
T PRK00753 15 NRTSLYLGLLLVFVLGILF 33 (39)
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 4566777887777666554
No 307
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=46.15 E-value=38 Score=25.89 Aligned_cols=16 Identities=38% Similarity=0.656 Sum_probs=13.9
Q ss_pred ccccceEEEcCEEcCC
Q 026422 190 VYATPTFFVNGFSLAG 205 (238)
Q Consensus 190 V~gtPt~~vnG~~~~~ 205 (238)
-..+|.+||||+++-|
T Consensus 58 ~~tvPqVFI~G~~IGG 73 (147)
T cd03031 58 AVSLPRVFVDGRYLGG 73 (147)
T ss_pred CCCCCEEEECCEEEec
Confidence 4789999999999965
No 308
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=45.37 E-value=16 Score=24.14 Aligned_cols=21 Identities=19% Similarity=0.004 Sum_probs=16.0
Q ss_pred EEeeCCCCchhhhhchhHHHH
Q 026422 57 EAFFDPVCPDSRDAWPPLKQA 77 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~~ 77 (238)
.+|....||+|.+....+.+.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL 23 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc
Confidence 468888999999877666544
No 309
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=45.30 E-value=25 Score=27.37 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=24.9
Q ss_pred ccceEEEcCEEcCCCCCCCCHhhHHHHHHHhhhh
Q 026422 192 ATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 192 gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
..|.++|||+.+.+ .+.|.+.++|+++..+
T Consensus 130 ~AP~vmind~~~~~----lt~e~l~eil~~~~~~ 159 (160)
T COG1905 130 QAPVVMINDDVYGR----LTPEKLEEILEKLKAK 159 (160)
T ss_pred cCCEEEECCchhcc----CCHHHHHHHHHHHhcC
Confidence 47999999999864 6899999999887654
No 310
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=44.83 E-value=23 Score=26.74 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=24.9
Q ss_pred cccc-----eEEE--cCEEcCCCCCCCCHhhHHHHHHHhh
Q 026422 191 YATP-----TFFV--NGFSLAGAGSPLDYNGWRKVIDPLL 223 (238)
Q Consensus 191 ~gtP-----t~~v--nG~~~~~~~~~~~~e~~~~~i~~ll 223 (238)
.+.| ||+| +|+.+.-..|..+.+++.+.|+.++
T Consensus 114 ~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 114 KKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 4689 6888 5887765566788999888887764
No 311
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=42.90 E-value=30 Score=23.53 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=17.0
Q ss_pred eEEEEeeCCCCchhhhhchhHHH
Q 026422 54 IIIEAFFDPVCPDSRDAWPPLKQ 76 (238)
Q Consensus 54 ~~ve~f~D~~Cp~C~~~~~~l~~ 76 (238)
-.+.+|....||+|.+..-.+..
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~ 39 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAA 39 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHH
Confidence 34667999999999977555543
No 312
>PF15240 Pro-rich: Proline-rich
Probab=42.18 E-value=16 Score=28.94 Aligned_cols=14 Identities=14% Similarity=-0.040 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhc
Q 026422 16 QSALLCFFVFNSCS 29 (238)
Q Consensus 16 ~~~~~~~~~~~~~~ 29 (238)
|||||++.+||++.
T Consensus 1 MLlVLLSvALLALS 14 (179)
T PF15240_consen 1 MLLVLLSVALLALS 14 (179)
T ss_pred ChhHHHHHHHHHhh
Confidence 45666555554433
No 313
>CHL00038 psbL photosystem II protein L
Probab=42.16 E-value=66 Score=18.34 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 026422 9 NHATLILQSALLCFFVFNS 27 (238)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (238)
+|.-+..|++.++++.++.
T Consensus 14 NRTSLy~GLLlifvl~vlf 32 (38)
T CHL00038 14 NRTSLYWGLLLIFVLAVLF 32 (38)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 4566777777776655543
No 314
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=41.94 E-value=76 Score=24.71 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=26.4
Q ss_pred CCCceEEEEeeCCCCch-hhhhchhHHHHHHHh---CCcEEEEEEe
Q 026422 50 DSDAIIIEAFFDPVCPD-SRDAWPPLKQALQHY---GPHVSLVVHL 91 (238)
Q Consensus 50 ~a~~~~ve~f~D~~Cp~-C~~~~~~l~~~~~~~---~~~v~~~~~~ 91 (238)
.+++.+|. |.=..||. |-.....+.++.++. +.++++++.-
T Consensus 51 ~Gk~~lv~-F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~IS 95 (174)
T PF02630_consen 51 KGKWVLVF-FGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFIS 95 (174)
T ss_dssp TTSEEEEE-EE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEE-EEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEE
Confidence 34677786 88889974 776666666655543 3467777764
No 315
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=41.55 E-value=42 Score=31.57 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHHHHhcCCccccceEEE---cCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 181 SFKFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 181 ~~~~a~~~gV~gtPt~~v---nG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
+.++-+++|+.|.|++++ +|+......|-.+.+.+.+.|++.
T Consensus 523 ~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 523 ITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 455679999999999987 566655566678888888888764
No 316
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=41.33 E-value=55 Score=22.78 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=18.7
Q ss_pred CCccccceEEEcCEEcCCCCCCCCHhhHHHH
Q 026422 188 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKV 218 (238)
Q Consensus 188 ~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~ 218 (238)
.|-..+|.+||||+++-| ++++..+
T Consensus 56 ~g~~tvPQIFi~~~~iGg------~ddl~~l 80 (92)
T cd03030 56 NGKPLPPQIFNGDEYCGD------YEAFFEA 80 (92)
T ss_pred CCCCCCCEEEECCEEeeC------HHHHHHH
Confidence 466788999999999954 4666543
No 317
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=41.30 E-value=39 Score=22.50 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=20.5
Q ss_pred ccceEEEcCEEcCCCCCCCCHhhHHHHHHH
Q 026422 192 ATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 192 gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
.-|.+.|+|..+.. .+.+++.++++.
T Consensus 54 ~gP~v~v~g~~y~~----vt~~~i~~i~~~ 79 (80)
T cd03064 54 LAPVMMINDDVYGR----LTPEKVDAILEA 79 (80)
T ss_pred CCCEEEECCEEECC----CCHHHHHHHHHh
Confidence 46899999987765 578888888765
No 318
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=41.10 E-value=30 Score=29.94 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=34.8
Q ss_pred HHHHhcCCccccceE--EEcCEEcC-CCCCCCCHhhHHHHHHHhhhh
Q 026422 182 FKFSATRGVYATPTF--FVNGFSLA-GAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 182 ~~~a~~~gV~gtPt~--~vnG~~~~-~~~~~~~~e~~~~~i~~ll~~ 225 (238)
..+|.++.|+-.||+ |.||.... -+.|..+.+.+.+.|++.+.-
T Consensus 62 ~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 62 DDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred hHHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHhcc
Confidence 446888999999998 45998875 467789999999988876543
No 319
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.87 E-value=16 Score=29.93 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=22.8
Q ss_pred ceEEEEeeCCCCchhhhhchhHHHHHHH
Q 026422 53 AIIIEAFFDPVCPDSRDAWPPLKQALQH 80 (238)
Q Consensus 53 ~~~ve~f~D~~Cp~C~~~~~~l~~~~~~ 80 (238)
+..+-+|+|..||||.+.+..++.+.++
T Consensus 119 ~~~~~~f~~~~~~~~~~a~~~~~~~~~~ 146 (244)
T COG1651 119 VLREFPFLDPACPYCRRAAQAARCAADQ 146 (244)
T ss_pred EEEEeecCCCCcHHHHHHHHHHHHhccc
Confidence 4455579999999999999988877653
No 320
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=40.30 E-value=23 Score=25.32 Aligned_cols=21 Identities=10% Similarity=-0.116 Sum_probs=17.5
Q ss_pred CCceEEEEeeCCCCchhhhhch
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWP 72 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~ 72 (238)
.++..|. |.+-.|++|..+..
T Consensus 17 ~K~llv~-~~~~~c~~c~~~~~ 37 (114)
T cd02958 17 KKWLLVY-LQSEDEFDSQVLNR 37 (114)
T ss_pred CceEEEE-EecCCcchHHHHHH
Confidence 3677787 99999999999865
No 321
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=39.79 E-value=44 Score=30.13 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.6
Q ss_pred hcCCccccceEEEcCEEcCCC
Q 026422 186 ATRGVYATPTFFVNGFSLAGA 206 (238)
Q Consensus 186 ~~~gV~gtPt~~vnG~~~~~~ 206 (238)
...|..++|+++|||+.+.|.
T Consensus 54 ~~~g~~tvP~ifi~~~~igGf 74 (410)
T PRK12759 54 VEEHIRTVPQIFVGDVHIGGY 74 (410)
T ss_pred ccCCCCccCeEEECCEEEeCc
Confidence 447899999999999988664
No 322
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=39.71 E-value=32 Score=26.11 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=23.7
Q ss_pred hcCCccccceEEEcCEEcCCCCCCCCHhhHHHHHHH
Q 026422 186 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 186 ~~~gV~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
......+-=|.+|||++++| ..+.+++..++..
T Consensus 70 Ip~e~~SCHT~VI~Gy~vEG---HVPa~aI~~ll~~ 102 (149)
T COG3019 70 IPYEMQSCHTAVINGYYVEG---HVPAEAIARLLAE 102 (149)
T ss_pred CChhhccccEEEEcCEEEec---cCCHHHHHHHHhC
Confidence 33334566699999999976 5888887666643
No 323
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=39.44 E-value=31 Score=27.95 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=21.1
Q ss_pred HHhcCCccccceEEE-cCEEcCCCCCCCCHhhH
Q 026422 184 FSATRGVYATPTFFV-NGFSLAGAGSPLDYNGW 215 (238)
Q Consensus 184 ~a~~~gV~gtPt~~v-nG~~~~~~~~~~~~e~~ 215 (238)
+.++++|+.+|+|+| .+..+....|..+.++-
T Consensus 154 lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~~A 186 (212)
T PRK13730 154 LFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQA 186 (212)
T ss_pred HHHhcCCccccEEEEEcCCCCCEEEecccHHHH
Confidence 468999999999998 33333333455666553
No 324
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=39.21 E-value=23 Score=26.31 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=16.2
Q ss_pred HHHhcCCcc---------ccceEEE---cCEEcC
Q 026422 183 KFSATRGVY---------ATPTFFV---NGFSLA 204 (238)
Q Consensus 183 ~~a~~~gV~---------gtPt~~v---nG~~~~ 204 (238)
..+.++|+. ++|+++| ||+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~ 129 (146)
T PF08534_consen 96 ALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVY 129 (146)
T ss_dssp HHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEE
T ss_pred HHHHHhCCccccccccCCeecEEEEEECCCEEEE
Confidence 346778887 9999865 687654
No 325
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=38.99 E-value=30 Score=26.42 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=18.0
Q ss_pred HHHhcCCccccceEEE---cCEEcC
Q 026422 183 KFSATRGVYATPTFFV---NGFSLA 204 (238)
Q Consensus 183 ~~a~~~gV~gtPt~~v---nG~~~~ 204 (238)
..+..+||.|.||.++ +|+.+.
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEe
Confidence 4678899999999986 677774
No 326
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=38.55 E-value=21 Score=22.70 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=15.3
Q ss_pred EEeeCCCCchhhhhchhHHHH
Q 026422 57 EAFFDPVCPDSRDAWPPLKQA 77 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~~ 77 (238)
.+|....||+|.+..-.+...
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc
Confidence 357778899998877766544
No 327
>KOG2703 consensus C4-type Zn-finger protein [General function prediction only]
Probab=37.94 E-value=20 Score=32.03 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=24.3
Q ss_pred EeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 58 AFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
+..+|.||||..-.-.+.....--++.++++++.
T Consensus 65 VimSF~CpHCG~kN~eiQ~a~~iQ~~Gvri~l~V 98 (460)
T KOG2703|consen 65 VIMSFECPHCGHKNNEIQSAEEIQEGGVRIELRV 98 (460)
T ss_pred eeEEeecCccCCccccccchhccccCceEEEEEe
Confidence 3789999999987777765444444567888764
No 328
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=37.37 E-value=60 Score=17.53 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=14.7
Q ss_pred CCChhhHHHHHHHHHHHHHHH
Q 026422 5 SPNKNHATLILQSALLCFFVF 25 (238)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (238)
..++.|+.++..+.+++.+++
T Consensus 5 ~LP~~Hr~~l~~l~~v~l~ll 25 (30)
T PF08525_consen 5 PLPKLHRRALIALSAVVLVLL 25 (30)
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 356788888888777765543
No 329
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=36.49 E-value=16 Score=27.57 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=12.2
Q ss_pred CCCCchhhhhchhHH
Q 026422 61 DPVCPDSRDAWPPLK 75 (238)
Q Consensus 61 D~~Cp~C~~~~~~l~ 75 (238)
...||||++..|.+.
T Consensus 6 ei~CPhCRq~ipALt 20 (161)
T PF09654_consen 6 EIQCPHCRQTIPALT 20 (161)
T ss_pred cCcCchhhcccchhe
Confidence 357999999988764
No 330
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=36.45 E-value=42 Score=30.86 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=26.5
Q ss_pred hcCCccccceEEE--cCEE-cCCCC-CCCCHhhHHHHHHHh
Q 026422 186 ATRGVYATPTFFV--NGFS-LAGAG-SPLDYNGWRKVIDPL 222 (238)
Q Consensus 186 ~~~gV~gtPt~~v--nG~~-~~~~~-~~~~~e~~~~~i~~l 222 (238)
.+++|.++|||++ ||.. ...+. |..+.+++..+|+.+
T Consensus 422 ~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 422 QELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred HHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 5789999999976 6642 22233 468899988888654
No 331
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=36.14 E-value=16 Score=27.57 Aligned_cols=15 Identities=33% Similarity=0.738 Sum_probs=12.2
Q ss_pred CCCCchhhhhchhHH
Q 026422 61 DPVCPDSRDAWPPLK 75 (238)
Q Consensus 61 D~~Cp~C~~~~~~l~ 75 (238)
...||||++..|.+.
T Consensus 9 ei~CPhCRQ~ipALt 23 (163)
T TIGR02652 9 EIRCPHCRQNIPALT 23 (163)
T ss_pred cCcCchhhcccchhe
Confidence 457999999988764
No 332
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=35.88 E-value=41 Score=27.03 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=27.5
Q ss_pred cccceEEEcCEEcCCCCCCCCHhhHHHHHHHhhhhcCC
Q 026422 191 YATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGK 228 (238)
Q Consensus 191 ~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ll~~~~~ 228 (238)
...|.+.||+.++.+ .+.+++.++++.+-+++..
T Consensus 165 vnaPmi~IND~yyed----lt~k~l~eIle~L~~~k~p 198 (233)
T KOG3196|consen 165 VNAPMIAINDDYYED----LTPKKLVEILEDLKAGKKP 198 (233)
T ss_pred ccCceeeecchhhcc----CCHHHHHHHHHHHhcCCCC
Confidence 446999999999875 6899999999998776543
No 333
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=35.52 E-value=36 Score=26.82 Aligned_cols=38 Identities=8% Similarity=-0.005 Sum_probs=27.7
Q ss_pred CceEEEEee-CCCCchhhhhchhHHHHHHHhCC-cEEEEEE
Q 026422 52 DAIIIEAFF-DPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (238)
Q Consensus 52 ~~~~ve~f~-D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~ 90 (238)
++++|. |+ --.||.|..-.+.+.++.+++.+ +++++..
T Consensus 32 k~vvl~-F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~V 71 (187)
T TIGR03137 32 KWSVFF-FYPADFTFVCPTELEDLADKYAELKKLGVEVYSV 71 (187)
T ss_pred CEEEEE-EECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 566665 55 78899999999999888888752 4554443
No 334
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=35.20 E-value=13 Score=17.87 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=11.5
Q ss_pred CCCchhhhhchhHHHHHH
Q 026422 62 PVCPDSRDAWPPLKQALQ 79 (238)
Q Consensus 62 ~~Cp~C~~~~~~l~~~~~ 79 (238)
|.|+.|....+....+..
T Consensus 1 ~~C~~C~~~~~~~~~l~~ 18 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQ 18 (24)
T ss_dssp EE-SSTS-EESSHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHH
Confidence 469999988877766654
No 335
>PRK05932 RNA polymerase factor sigma-54; Reviewed
Probab=34.87 E-value=1.1e+02 Score=28.17 Aligned_cols=98 Identities=20% Similarity=0.383 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceE
Q 026422 117 ATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTF 196 (238)
Q Consensus 117 ~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~ 196 (238)
...+..+.|-+.|..|+..+...+. +=.+. ++| +.+|+. ...+..+.+ +.-.....|+.-.=.|
T Consensus 318 TL~~v~~~Iv~~Q~~Ff~~G~~~Lk-PLtlk---dvA-e~lglh-eSTVSRav~----------~Kyv~tp~Gi~~lk~F 381 (455)
T PRK05932 318 TLLKVARCIVEQQRDFFEHGEEALK-PLVLK---DIA-EELGMH-ESTISRATT----------NKYMATPRGIFELKYF 381 (455)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCc-CccHH---HHH-HHhCCC-ccchhhhhc----------CceeecCCceEEHHHh
Confidence 4677888899999999975531111 11122 334 368887 444433332 2223466788777778
Q ss_pred EEcCEEcCCCCCCCCHhhHHHHHHHhhhhcCCCCC
Q 026422 197 FVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKRE 231 (238)
Q Consensus 197 ~vnG~~~~~~~~~~~~e~~~~~i~~ll~~~~~~~~ 231 (238)
|..|..-.+ ++..|.+.+++.|..+++.+.++.|
T Consensus 382 Fs~~~~~~~-g~~~S~~~Ik~~Ik~lI~~Ed~~~P 415 (455)
T PRK05932 382 FSSAVSTDG-GGEASSTAIRALIKKLIAAENPKKP 415 (455)
T ss_pred cccccCCCC-CccccHHHHHHHHHHHHHhcCCCCC
Confidence 877653221 2457899999999999999887764
No 336
>PHA00616 hypothetical protein
Probab=34.72 E-value=29 Score=20.75 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=14.5
Q ss_pred CCCchhhhhchhHHHHHHH
Q 026422 62 PVCPDSRDAWPPLKQALQH 80 (238)
Q Consensus 62 ~~Cp~C~~~~~~l~~~~~~ 80 (238)
|+||.|...+.....+...
T Consensus 2 YqC~~CG~~F~~~s~l~~H 20 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEH 20 (44)
T ss_pred CccchhhHHHhhHHHHHHH
Confidence 7899999888766665543
No 337
>PLN02309 5'-adenylylsulfate reductase
Probab=34.33 E-value=57 Score=29.94 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=26.9
Q ss_pred HHHh-cCCccccceEEE--cCEE-cCCCC-CCCCHhhHHHHHHHh
Q 026422 183 KFSA-TRGVYATPTFFV--NGFS-LAGAG-SPLDYNGWRKVIDPL 222 (238)
Q Consensus 183 ~~a~-~~gV~gtPt~~v--nG~~-~~~~~-~~~~~e~~~~~i~~l 222 (238)
..+. +++|.++|||++ +|.. ...+. +..+.+++..+|+.+
T Consensus 412 ~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 412 EFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred HHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 3454 589999999976 5532 11233 457899998888764
No 338
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=34.25 E-value=11 Score=18.47 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=12.6
Q ss_pred CCCchhhhhchhHHHHHH
Q 026422 62 PVCPDSRDAWPPLKQALQ 79 (238)
Q Consensus 62 ~~Cp~C~~~~~~l~~~~~ 79 (238)
|.|+.|....+.-..+..
T Consensus 1 y~C~~C~~~f~~~~~l~~ 18 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKR 18 (23)
T ss_dssp EEETTTTEEESSHHHHHH
T ss_pred CCCCCCCCccCCHHHHHH
Confidence 469999988776655543
No 339
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=34.09 E-value=28 Score=22.27 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=13.3
Q ss_pred EeeCCCCchhhhhchhHH
Q 026422 58 AFFDPVCPDSRDAWPPLK 75 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~ 75 (238)
+|....||+|.+..-.+.
T Consensus 3 Ly~~~~~p~~~rvr~~L~ 20 (71)
T cd03037 3 LYIYEHCPFCVKARMIAG 20 (71)
T ss_pred eEecCCCcHhHHHHHHHH
Confidence 477888999997655554
No 340
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=34.02 E-value=38 Score=28.16 Aligned_cols=40 Identities=10% Similarity=0.330 Sum_probs=34.0
Q ss_pred CCceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
..|.++. |-+.+||-=..--+.++++.++|.+.++|...+
T Consensus 102 ~RPLVln-FGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VY 141 (237)
T PF00837_consen 102 NRPLVLN-FGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVY 141 (237)
T ss_pred CCCeEEE-cccccchHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 3578888 999999999988899999999999777777654
No 341
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=33.94 E-value=28 Score=21.30 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=12.3
Q ss_pred EeeCCCCchhhhhchhHHH
Q 026422 58 AFFDPVCPDSRDAWPPLKQ 76 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~~ 76 (238)
+|.-..||+|.+....+..
T Consensus 3 ly~~~~~~~~~~~~~~l~~ 21 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEE 21 (71)
T ss_pred EEeCCCCccHHHHHHHHHH
Confidence 4666778888766555543
No 342
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=33.77 E-value=35 Score=25.87 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=21.3
Q ss_pred cceEEEcCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 193 TPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 193 tPt~~vnG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
-|.+.|||+.+.. .+.+++.++|+++
T Consensus 119 aP~v~V~~~~y~~----vt~e~v~~il~~l 144 (145)
T PF01257_consen 119 APVVMVDGEWYGN----VTPEKVDEILEEL 144 (145)
T ss_dssp SSEEEECCCEEES----SSCCHHHHHHHHH
T ss_pred CCEEEECCEEECC----CCHHHHHHHHHhc
Confidence 6999999998764 5788888888765
No 343
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=33.66 E-value=34 Score=24.98 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=22.6
Q ss_pred HHHhcCCcccc---------ceEE-E--cCEEcCCCCCCCCHhhHHHHH
Q 026422 183 KFSATRGVYAT---------PTFF-V--NGFSLAGAGSPLDYNGWRKVI 219 (238)
Q Consensus 183 ~~a~~~gV~gt---------Pt~~-v--nG~~~~~~~~~~~~e~~~~~i 219 (238)
+.++.+|+..+ |+.+ | +|+......|..+.+++.+.+
T Consensus 91 ~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 91 KLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 34677888887 7765 4 476654444455556655544
No 344
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=32.43 E-value=35 Score=24.67 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=21.8
Q ss_pred EEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 57 EAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
.+|..+.|+-|++....+++- ++.+.++.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di 31 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKY 31 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEec
Confidence 369999999999976665542 466777654
No 345
>PHA00407 phage lambda Rz1-like protein
Probab=31.81 E-value=1.2e+02 Score=20.36 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=19.3
Q ss_pred CCCCCChhhH----HHHHHHHHHHHHHHHhhccCCCCCCCCCCCe
Q 026422 2 QSPSPNKNHA----TLILQSALLCFFVFNSCSKSQSTPPAKYDGF 42 (238)
Q Consensus 2 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (238)
+.+-.++-+. ++++|++.+++.+ .+++++.+.+|..+...
T Consensus 19 ~y~~stkktl~rwkaaLIGlllicv~t-ISGCaSes~lp~ep~k~ 62 (84)
T PHA00407 19 KYRLSTKKTLRRWKAALIGLLLICVAT-ISGCASESNLPVEPQKV 62 (84)
T ss_pred cCcchhhhhhHHHHHHHHHHHHHHHHH-HhhhhhcccCCCCcccc
Confidence 4444444433 3444444443333 45677777665444333
No 346
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=31.45 E-value=33 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=13.4
Q ss_pred EEeeCCCCchhhhhchhHHH
Q 026422 57 EAFFDPVCPDSRDAWPPLKQ 76 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~ 76 (238)
.+|....||+|++..-.++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~ 21 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKA 21 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHH
Confidence 35778888888865555543
No 347
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=31.19 E-value=77 Score=22.71 Aligned_cols=41 Identities=10% Similarity=-0.049 Sum_probs=29.8
Q ss_pred HHhcCCccc--cceEEEc---C--EEcCCCCCCCCHhhHHHHHHHhhhh
Q 026422 184 FSATRGVYA--TPTFFVN---G--FSLAGAGSPLDYNGWRKVIDPLLSE 225 (238)
Q Consensus 184 ~a~~~gV~g--tPt~~vn---G--~~~~~~~~~~~~e~~~~~i~~ll~~ 225 (238)
.+..+|+.+ +|.+.|. + ++.. ..+..+.+++.+.++..+..
T Consensus 63 ~~~~fgl~~~~~P~i~i~~~~~~~Ky~~-~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 63 PLLHLGKTPADLPVIAIDSFRHMYLFPD-FEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred HHHHcCCCHhHCCEEEEEcchhcCcCCC-CccccCHHHHHHHHHHHhcC
Confidence 467889988 8999872 3 3321 34568889999999887754
No 348
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=31.00 E-value=33 Score=21.82 Aligned_cols=19 Identities=16% Similarity=0.003 Sum_probs=13.7
Q ss_pred EeeCCCCchhhhhchhHHH
Q 026422 58 AFFDPVCPDSRDAWPPLKQ 76 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~~ 76 (238)
+|....||+|.+..-.++.
T Consensus 3 ly~~~~~~~~~~v~~~l~~ 21 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAE 21 (73)
T ss_pred EEECCCChhHHHHHHHHHH
Confidence 5777888888887665543
No 349
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=30.65 E-value=72 Score=25.02 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=22.4
Q ss_pred ccceEEEcCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 192 ATPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 192 gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
-.|.+.|||+.+.+ .+.+.+.++|+++
T Consensus 141 ~AP~~~Vn~~~~~~----lt~e~v~~il~~~ 167 (169)
T PRK07571 141 IAPAVVFDGKVAGK----QTPESVLEKVQGW 167 (169)
T ss_pred CCCeEEECCEEeCC----CCHHHHHHHHHHH
Confidence 36999999998764 6889999888876
No 350
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=30.28 E-value=70 Score=21.40 Aligned_cols=27 Identities=11% Similarity=0.189 Sum_probs=20.3
Q ss_pred cccceEEEcCEEcCCCCCCCCHhhHHHHHHH
Q 026422 191 YATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 191 ~gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
.--|.+.|||..+.. .+.+++.++++.
T Consensus 53 ~~~P~v~V~~~~y~~----v~~~~v~~iv~~ 79 (80)
T cd03083 53 DQGPALLINNRVFTR----LTPGRIDQIAEL 79 (80)
T ss_pred CCCCeEEECCEEECC----CCHHHHHHHHhc
Confidence 346999999976643 688998888765
No 351
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=30.18 E-value=40 Score=24.24 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=21.2
Q ss_pred EEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 57 EAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 57 e~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
.+|.-..|+-|++....++ +. ++.|.++++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~----~~--~i~~~~~di 31 (112)
T cd03034 2 TIYHNPRCSKSRNALALLE----EA--GIEPEIVEY 31 (112)
T ss_pred EEEECCCCHHHHHHHHHHH----HC--CCCeEEEec
Confidence 3699999999999854444 33 366777754
No 352
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=29.81 E-value=38 Score=21.68 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=13.7
Q ss_pred EeeCCCCchhhhhchhHHH
Q 026422 58 AFFDPVCPDSRDAWPPLKQ 76 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~~ 76 (238)
+|.-..||+|.+..-.+++
T Consensus 3 ly~~~~~p~~~rv~~~L~~ 21 (71)
T cd03060 3 LYSFRRCPYAMRARMALLL 21 (71)
T ss_pred EEecCCCcHHHHHHHHHHH
Confidence 4777889999877655553
No 353
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=29.52 E-value=50 Score=24.50 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=22.8
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
|.+|.-+.|.-|++....|++- .+.|.++.+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~------gi~~~~~d~ 33 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS------GHDVEVQDI 33 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCcEEEec
Confidence 4579999999999976655433 477777764
No 354
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=29.49 E-value=19 Score=21.44 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=4.0
Q ss_pred Cchhhh
Q 026422 64 CPDSRD 69 (238)
Q Consensus 64 Cp~C~~ 69 (238)
||+|..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 777764
No 355
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=29.31 E-value=41 Score=22.48 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=24.9
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
|.+|+-..|+-|-.+...+.++..+.+ +.+..+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vD 35 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVD 35 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEE
Confidence 446999999999999999998765544 5555554
No 356
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=29.16 E-value=20 Score=25.83 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=11.4
Q ss_pred CCCchhhhhchhHH
Q 026422 62 PVCPDSRDAWPPLK 75 (238)
Q Consensus 62 ~~Cp~C~~~~~~l~ 75 (238)
..||||-..|-.+.
T Consensus 58 lsCpwC~gvWvA~~ 71 (105)
T PF07098_consen 58 LSCPWCTGVWVAAG 71 (105)
T ss_pred hcChhHHHHHHHHH
Confidence 68999999986554
No 357
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=29.14 E-value=84 Score=20.31 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=20.5
Q ss_pred eeCCCCchhhhhchhHHHHHHHhCCcEEEEEEecc
Q 026422 59 FFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLP 93 (238)
Q Consensus 59 f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~p 93 (238)
|....||+|.+..-.++.. ++.+.++..+
T Consensus 2 y~~~~Sp~~~kv~~~l~~~------~i~~~~~~v~ 30 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEK------GIPYELVPVD 30 (75)
T ss_dssp EEETTSHHHHHHHHHHHHH------TEEEEEEEEB
T ss_pred CCcCCChHHHHHHHHHHHc------CCeEEEeccC
Confidence 6678899999887766644 3666666543
No 358
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.
Probab=28.95 E-value=15 Score=23.17 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=9.1
Q ss_pred eeCCCCchhhhhc
Q 026422 59 FFDPVCPDSRDAW 71 (238)
Q Consensus 59 f~D~~Cp~C~~~~ 71 (238)
|.|..||.|++..
T Consensus 5 Fm~VkCp~C~~~q 17 (55)
T PF01667_consen 5 FMDVKCPGCYNIQ 17 (55)
T ss_dssp EEEEE-TTT-SEE
T ss_pred EEEEECCCCCCee
Confidence 8999999998653
No 359
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=28.88 E-value=57 Score=23.86 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=17.9
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHh
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHY 81 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~ 81 (238)
+..+|+ |+-.. |||.+ +|..+++..+|
T Consensus 19 ~~vlV~-F~A~~-Pwc~k-~~~~~~LA~e~ 45 (116)
T cd03007 19 KYSLVK-FDTAY-PYGEK-HEAFTRLAESS 45 (116)
T ss_pred CcEEEE-EeCCC-CCCCC-hHHHHHHHHHH
Confidence 568888 66633 77776 46666776665
No 360
>PRK10026 arsenate reductase; Provisional
Probab=28.35 E-value=55 Score=24.85 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=23.2
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
|.+|.-+.|+-|++....|++- ++.|.++++
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~------gi~~~~~d~ 34 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS------GTEPTIIHY 34 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCcEEEee
Confidence 5579999999999887655533 467777764
No 361
>PRK12469 RNA polymerase factor sigma-54; Provisional
Probab=27.88 E-value=1.4e+02 Score=27.72 Aligned_cols=98 Identities=16% Similarity=0.268 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhhHhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhcccCChhHHHHHHHHHHHHhcCCccccceE
Q 026422 117 ATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTF 196 (238)
Q Consensus 117 ~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~a~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~gV~gtPt~ 196 (238)
...+....|-+.|..|+..+...+. +=++. ++| +.+|+. ...+.. +-.+.-...-.||.-.=.|
T Consensus 344 TllkV~~~Iv~~Q~~Ff~~G~~~Lk-PLtlk---dVA-e~lglH-eSTVSR----------a~~~KY~~tp~GifeLK~F 407 (481)
T PRK12469 344 TIQRVAECIVARQRDFFRYGEIALK-PLVLR---DVA-EELGLH-ESTISR----------ATGNKYMATPRGTFEFKHF 407 (481)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCc-CCcHH---HHH-HHhCCC-cchhhH----------HhcCceeecCCceEeHHHh
Confidence 3567888888899999875532111 11223 333 368887 443322 2223334567788777778
Q ss_pred EEcCEEcCCCCCCCCHhhHHHHHHHhhhhcCCCCC
Q 026422 197 FVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKRE 231 (238)
Q Consensus 197 ~vnG~~~~~~~~~~~~e~~~~~i~~ll~~~~~~~~ 231 (238)
|-.|..-. .++..|.+.++..|..++..+.++.|
T Consensus 408 Fs~~v~~~-~g~~~Ss~~Ik~~Ik~lI~~Ed~~kP 441 (481)
T PRK12469 408 FPRKLEAA-GGGECSAAAVRALIKEMIAAEQAGDP 441 (481)
T ss_pred hccccCCC-CCccccHHHHHHHHHHHHHhcCCCCC
Confidence 77665322 23457899999999999999877754
No 362
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=27.87 E-value=86 Score=24.19 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=21.9
Q ss_pred ccceEEEcCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 192 ATPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 192 gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
..|.+.|||+.+.+ .+.+.+.++|+++
T Consensus 128 ~aP~~~in~~~~~~----lt~~~~~~il~~~ 154 (156)
T PRK05988 128 CSPAAMLDGEVHGR----LDPQRLDALLAEA 154 (156)
T ss_pred CCCeEEECCEEeCC----CCHHHHHHHHHHh
Confidence 46999999998764 5889888888765
No 363
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=27.85 E-value=20 Score=22.79 Aligned_cols=14 Identities=36% Similarity=0.975 Sum_probs=10.8
Q ss_pred CCCCchhhhhchhH
Q 026422 61 DPVCPDSRDAWPPL 74 (238)
Q Consensus 61 D~~Cp~C~~~~~~l 74 (238)
.+.||-|+..+..+
T Consensus 44 ~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 44 FPVCPECKEIYESL 57 (58)
T ss_pred CCCCcCHHHHHHhc
Confidence 47899999876544
No 364
>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG
Probab=26.79 E-value=25 Score=21.83 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=8.6
Q ss_pred CCCchhhhhchh
Q 026422 62 PVCPDSRDAWPP 73 (238)
Q Consensus 62 ~~Cp~C~~~~~~ 73 (238)
+.||||......
T Consensus 1 i~CPyCge~~~~ 12 (52)
T PF14255_consen 1 IQCPYCGEPIEI 12 (52)
T ss_pred CCCCCCCCeeEE
Confidence 479999876543
No 365
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.31 E-value=3.8e+02 Score=22.25 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=25.7
Q ss_pred ceEEEEeeCCCCchhhhhchhHHHHHHHhC
Q 026422 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (238)
Q Consensus 53 ~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~ 82 (238)
.=+|| |+--..|.|..+.|.+.++..+|.
T Consensus 146 ~WlIe-Ffa~ws~~Cv~~spvfaeLS~kyn 174 (265)
T KOG0914|consen 146 YWLIE-FFACWSPKCVRFSPVFAELSIKYN 174 (265)
T ss_pred EEEEE-EEeecChhhcccccccHHHHHHhC
Confidence 45788 999999999999999999998885
No 366
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=25.85 E-value=53 Score=21.11 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=13.7
Q ss_pred EEEeeCCCCchhhhhchhHHH
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQ 76 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~ 76 (238)
+.+|....||+|.+..-.+..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~ 22 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEE 22 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHH
Confidence 445777778887776655543
No 367
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=25.83 E-value=64 Score=23.59 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=22.2
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
|.+|..+.|.-|++....++ +++ +.+.++.+
T Consensus 3 itiy~~p~C~t~rka~~~L~----~~g--i~~~~~~y 33 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLE----EHG--IEYTFIDY 33 (117)
T ss_pred EEEEeCCCChHHHHHHHHHH----HcC--CCcEEEEe
Confidence 56799999999998766554 334 66666654
No 368
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=25.71 E-value=1.2e+02 Score=19.90 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=20.9
Q ss_pred eEEEcCEEcCCCCCCCCHhhHHHHHH
Q 026422 195 TFFVNGFSLAGAGSPLDYNGWRKVID 220 (238)
Q Consensus 195 t~~vnG~~~~~~~~~~~~e~~~~~i~ 220 (238)
.|..||..+.+++..++.|+..++..
T Consensus 8 vF~~~gi~L~DP~p~~spe~V~dfYs 33 (66)
T TIGR03738 8 VFTYNGVRLADPSPAMSPEQVRDFYS 33 (66)
T ss_pred EEEECCeEcCCCCCCCCHHHHHHHHh
Confidence 46679999998888999998877653
No 369
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=25.60 E-value=28 Score=15.12 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=4.3
Q ss_pred cccceE
Q 026422 191 YATPTF 196 (238)
Q Consensus 191 ~gtPt~ 196 (238)
.||||+
T Consensus 2 ~gTPTM 7 (13)
T PF10555_consen 2 SGTPTM 7 (13)
T ss_pred CCCccc
Confidence 478885
No 370
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=24.69 E-value=2e+02 Score=20.05 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=27.4
Q ss_pred ceEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEe
Q 026422 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (238)
Q Consensus 53 ~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~ 91 (238)
++.+.+|.|-. ++|......++++..- .++|++..+.
T Consensus 20 pV~l~~f~~~~-~~~~e~~~ll~e~a~l-SdkI~~~~~~ 56 (94)
T cd02974 20 PVELVASLDDS-EKSAELLELLEEIASL-SDKITLEEDN 56 (94)
T ss_pred CEEEEEEeCCC-cchHHHHHHHHHHHHh-CCceEEEEec
Confidence 45566698877 9999888888877654 3588887654
No 371
>PRK10853 putative reductase; Provisional
Probab=24.31 E-value=63 Score=23.57 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=22.7
Q ss_pred EEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEec
Q 026422 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (238)
Q Consensus 56 ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~ 92 (238)
|.+|.-+.|.-|++....|++ . ++.+.++.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~----~--~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA----Q--GIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH----c--CCCcEEeeh
Confidence 446999999999998766553 2 467777754
No 372
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.19 E-value=77 Score=19.33 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 026422 10 HATLILQSALLCFFVFNSCS 29 (238)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (238)
+...++++++++.+++++..
T Consensus 15 nk~a~~gl~il~~~vl~ai~ 34 (56)
T PF12911_consen 15 NKLAVIGLIILLILVLLAIF 34 (56)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 33445555555544444433
No 373
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=23.93 E-value=53 Score=19.83 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=12.7
Q ss_pred ccccceEEEcCEEcCC
Q 026422 190 VYATPTFFVNGFSLAG 205 (238)
Q Consensus 190 V~gtPt~~vnG~~~~~ 205 (238)
-.|...++|||+.+..
T Consensus 17 ~~GI~~V~VNG~~vv~ 32 (48)
T PF07908_consen 17 AEGIDYVFVNGQIVVE 32 (48)
T ss_dssp -BSEEEEEETTEEEEC
T ss_pred CCCEEEEEECCEEEEE
Confidence 4688899999998764
No 374
>PF14353 CpXC: CpXC protein
Probab=23.38 E-value=21 Score=26.35 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=12.4
Q ss_pred eeCCCCchhhhhchh
Q 026422 59 FFDPVCPDSRDAWPP 73 (238)
Q Consensus 59 f~D~~Cp~C~~~~~~ 73 (238)
|+.+.||+|......
T Consensus 36 l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 36 LFSFTCPSCGHKFRL 50 (128)
T ss_pred cCEEECCCCCCceec
Confidence 889999999976643
No 375
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.32 E-value=26 Score=19.92 Aligned_cols=13 Identities=15% Similarity=0.549 Sum_probs=7.3
Q ss_pred CCchhhhhchhHH
Q 026422 63 VCPDSRDAWPPLK 75 (238)
Q Consensus 63 ~Cp~C~~~~~~l~ 75 (238)
.||+|...+..=.
T Consensus 4 ~CP~C~~~f~v~~ 16 (37)
T PF13719_consen 4 TCPNCQTRFRVPD 16 (37)
T ss_pred ECCCCCceEEcCH
Confidence 4666665554443
No 376
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=23.12 E-value=4.8e+02 Score=23.42 Aligned_cols=48 Identities=15% Similarity=0.028 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCccccceEEE---cCEEcCCCCCCCCHhhHHHHHHH
Q 026422 174 TDLLTRVSFKFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDP 221 (238)
Q Consensus 174 ~~~~~~~~~~~a~~~gV~gtPt~~v---nG~~~~~~~~~~~~e~~~~~i~~ 221 (238)
++..+..-.+.-+.+||.-.|-++| ||.|=.|.-...+.+++..+=++
T Consensus 238 Vd~~L~kir~KY~eYgI~e~PfViVKADaGTYGMGImtv~~~~ev~~LNrK 288 (403)
T TIGR02049 238 VDQVLSKTQKKYEEYGIHTQPYVIVKADAGTYGMGIMTATSGEEVLGLNRK 288 (403)
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCCCceEEEecCHHHHHHhhhh
Confidence 3344444555668899999999999 67774332223556665544333
No 377
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.82 E-value=48 Score=22.45 Aligned_cols=18 Identities=28% Similarity=0.827 Sum_probs=14.2
Q ss_pred CCchhhhhc---hhHHHHHHH
Q 026422 63 VCPDSRDAW---PPLKQALQH 80 (238)
Q Consensus 63 ~Cp~C~~~~---~~l~~~~~~ 80 (238)
+||-|...| -.|.+++.+
T Consensus 23 ~CPrCrGVWLDrGELdKli~r 43 (88)
T COG3809 23 YCPRCRGVWLDRGELDKLIER 43 (88)
T ss_pred eCCccccEeecchhHHHHHHH
Confidence 699999988 467777764
No 378
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=22.34 E-value=22 Score=19.99 Aligned_cols=11 Identities=18% Similarity=0.721 Sum_probs=5.8
Q ss_pred CCCchhhhhch
Q 026422 62 PVCPDSRDAWP 72 (238)
Q Consensus 62 ~~Cp~C~~~~~ 72 (238)
+.||+|...+.
T Consensus 3 ~~CP~C~~~~~ 13 (38)
T TIGR02098 3 IQCPNCKTSFR 13 (38)
T ss_pred EECCCCCCEEE
Confidence 34666665443
No 379
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=21.90 E-value=65 Score=22.88 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=16.6
Q ss_pred CCCceEEEEeeCCCCchhhhh
Q 026422 50 DSDAIIIEAFFDPVCPDSRDA 70 (238)
Q Consensus 50 ~a~~~~ve~f~D~~Cp~C~~~ 70 (238)
+.+-..|| .-+..||.|..-
T Consensus 37 ~~~~VeIe-vG~~~cP~Cge~ 56 (102)
T PF04475_consen 37 DLDYVEIE-VGDTICPKCGEE 56 (102)
T ss_pred CCCeEEEe-cCcccCCCCCCc
Confidence 45678899 999999999854
No 380
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=21.74 E-value=1.6e+02 Score=22.60 Aligned_cols=43 Identities=21% Similarity=0.150 Sum_probs=23.3
Q ss_pred HHhcCCcc------ccceEE-E--cCEEcCCC----CCCCCHhhHHHHHHHhhhhc
Q 026422 184 FSATRGVY------ATPTFF-V--NGFSLAGA----GSPLDYNGWRKVIDPLLSEK 226 (238)
Q Consensus 184 ~a~~~gV~------gtPt~~-v--nG~~~~~~----~~~~~~e~~~~~i~~ll~~~ 226 (238)
.++.+|+. +.|+.+ | +|+..... ....+.+++.+.|+.+..-.
T Consensus 105 ~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~~ 160 (173)
T cd03015 105 ISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVE 160 (173)
T ss_pred HHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhh
Confidence 45667776 345665 5 46543211 11245677777777664433
No 381
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=21.66 E-value=62 Score=25.26 Aligned_cols=21 Identities=10% Similarity=-0.035 Sum_probs=13.7
Q ss_pred CCceEEEEeeCCCCchhhhhch
Q 026422 51 SDAIIIEAFFDPVCPDSRDAWP 72 (238)
Q Consensus 51 a~~~~ve~f~D~~Cp~C~~~~~ 72 (238)
.+++.|. +.-..|.||..+..
T Consensus 37 ~KpIfl~-ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 37 NKPIFLS-IGYSWCHWCHVMER 57 (163)
T ss_dssp T--EEEE-EE-TT-HHHHHHHH
T ss_pred CCcEEEE-EEecCCcchhhhcc
Confidence 3688888 78889999998753
No 382
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=21.24 E-value=1.6e+02 Score=23.93 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=37.8
Q ss_pred eEEEEeeCCCCchhhhhchhHHHHHHHhCCcEEEEEEeccccCCcchHHHHHHHHHHH
Q 026422 54 IIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVN 111 (238)
Q Consensus 54 ~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~~~pl~~~~~s~~aa~a~~~a~ 111 (238)
.++++.+.+.|+|=..+....+-+.++|| .++++--+||-| .+-...|++.-+++
T Consensus 70 ptl~i~fCvSCgYk~af~~~~~~l~ekyP-gl~IegaNy~Pp--~~kr~lAk~v~v~k 124 (226)
T KOG3286|consen 70 PTLEINFCVSCGYKQAFEQYKKFLKEKYP-GLDIEGANYPPP--AWKRYLAKVVSVVK 124 (226)
T ss_pred CcEEEEEEEecCcHHHHHHHHHHHHhhCC-CceeecCcCCCc--hHHHHHHHHHHHHh
Confidence 46888999999998888777777777899 577777766443 22234555555553
No 383
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=21.24 E-value=1.7e+02 Score=22.27 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=25.9
Q ss_pred HHhcCCcc--ccceEEE-c---CEEcCCCCCCCCHhhHHHHHH
Q 026422 184 FSATRGVY--ATPTFFV-N---GFSLAGAGSPLDYNGWRKVID 220 (238)
Q Consensus 184 ~a~~~gV~--gtPt~~v-n---G~~~~~~~~~~~~e~~~~~i~ 220 (238)
....+|+. ..|+++| + +++.....+..+.+++.++|+
T Consensus 141 ~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 141 LLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp HHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred HHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 45678887 8999985 4 565433366788888888775
No 384
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=21.22 E-value=1.2e+02 Score=22.93 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=20.5
Q ss_pred ccceEEEcCEEcCCCCCCCCHhhHHHHHHHh
Q 026422 192 ATPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 222 (238)
Q Consensus 192 gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~l 222 (238)
--|.+.|||+.+.+ .+.+++.++|+.+
T Consensus 121 ~aP~v~V~~~~y~~----vt~e~v~~il~~~ 147 (148)
T TIGR01958 121 NAPVMMINDDYYEF----LTPEKLDELLERY 147 (148)
T ss_pred CCCEEEECCEEeCC----CCHHHHHHHHHhc
Confidence 36999999986644 6889888887653
No 385
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=21.18 E-value=30 Score=22.14 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=10.9
Q ss_pred eeCCCCchhhhhc
Q 026422 59 FFDPVCPDSRDAW 71 (238)
Q Consensus 59 f~D~~Cp~C~~~~ 71 (238)
|.|..||.|.+..
T Consensus 9 F~~VkCp~C~n~q 21 (59)
T PRK00415 9 FLKVKCPDCGNEQ 21 (59)
T ss_pred EEEEECCCCCCeE
Confidence 8999999998643
No 386
>PF00674 DUP: DUP family; InterPro: IPR001142 A number of uncharacterised integral membrane proteins from yeast contain an internal duplication due to duplicated genes. Duplicated copies of genes may be classified in two types of cluster organisation. The first type includes genes sharing a significant level of identity in the amino acid sequences of their predicted protein product. They are recovered on two different chromosomes, transcribed in the same orientation and the distance between them is conserved. The second type of cluster is based on one gene unit tandemly repeated. This duplication is itself repeated elsewhere in the genome. The basic gene unit is recovered many times in the genome and is a component of a multigene family of unknown function. These organisations in clusters of genes suggest a 'Lego organisation' of the yeast chromosomes []. The proteins belonging to this family are of unknown function.
Probab=20.66 E-value=2.2e+02 Score=20.24 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCccccceEEEcCEEcC
Q 026422 174 TDLLTRVSFKFSATRGVYATPTFFVNGFSLA 204 (238)
Q Consensus 174 ~~~~~~~~~~~a~~~gV~gtPt~~vnG~~~~ 204 (238)
.+..+.....+--+.|...||-+|.||+.-.
T Consensus 62 Wd~IA~~mN~yly~~~~w~t~~~FyDG~~C~ 92 (108)
T PF00674_consen 62 WDIIASRMNQYLYEEGLWNTPYFFYDGKDCY 92 (108)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcccCcHHHH
Confidence 3444445566667789999999999998753
No 387
>PRK13190 putative peroxiredoxin; Provisional
Probab=20.59 E-value=1.3e+02 Score=24.10 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=27.2
Q ss_pred CceEEEEeeCCCCchhhhhchhHHHHHHHhCC-cEEEEE
Q 026422 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVV 89 (238)
Q Consensus 52 ~~~~ve~f~D~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~ 89 (238)
+..++-.|.--.||.|..-.+.+.++.+++.+ ++++.-
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~ 66 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVG 66 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 44555446777899999988999888888763 355443
No 388
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.46 E-value=69 Score=20.18 Aligned_cols=18 Identities=11% Similarity=0.013 Sum_probs=10.6
Q ss_pred EeeCCCCchhhhhchhHH
Q 026422 58 AFFDPVCPDSRDAWPPLK 75 (238)
Q Consensus 58 ~f~D~~Cp~C~~~~~~l~ 75 (238)
+|....||+|.+..-.+.
T Consensus 3 Ly~~~~~~~~~~v~~~l~ 20 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLA 20 (73)
T ss_pred EEeCCCCccHHHHHHHHH
Confidence 466666777765544443
No 389
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=20.36 E-value=3.5e+02 Score=24.15 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=18.2
Q ss_pred HHHHHHhcCCccccceEEEcCEE
Q 026422 180 VSFKFSATRGVYATPTFFVNGFS 202 (238)
Q Consensus 180 ~~~~~a~~~gV~gtPt~~vnG~~ 202 (238)
...+.|-++||.+|=|+++++..
T Consensus 203 e~~~~Ah~lGI~~tatml~Gh~E 225 (370)
T COG1060 203 EIHERAHRLGIPTTATMLLGHVE 225 (370)
T ss_pred HHHHHHHHcCCCccceeEEEecC
Confidence 45677899999999999887643
No 390
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=20.01 E-value=1.6e+02 Score=26.64 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=25.8
Q ss_pred ccceEEEcCEEcCCCCCCCCHhhHHHHHHHhhhhc
Q 026422 192 ATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 226 (238)
Q Consensus 192 gtPt~~vnG~~~~~~~~~~~~e~~~~~i~~ll~~~ 226 (238)
--|.+.|||.++.+ .+.+.+.++|+.+-..+
T Consensus 143 ~APv~~Ind~~y~~----LTpe~v~~IL~~l~ag~ 173 (400)
T PRK12373 143 NAPMVQIGKDYYED----LTPERLEEIIDAFAAGK 173 (400)
T ss_pred CCCeEEECCEEeCC----CCHHHHHHHHHHHhCCC
Confidence 36999999998865 68999999999987554
Done!