BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026423
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
+LL R G + ++ ++ ++ + G T LH+A R H I E+L + + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 62
Query: 91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
+ G TPLH+AAR G IV +LK + D +G TPLH A R
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPLHLAAR 110
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H +V +L+K G NA+ +TP +AID+ DIA
Sbjct: 111 EGHLEIVEVLLKA-----GADVNAQDKFGKTPFDLAIDNGNEDIA 150
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
+LL R G + ++ ++ ++ + G T LH+A R H I E+L + + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 62
Query: 91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
+ G TPLH+AAR G IV +LK + D +G TPLH A R
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPLHLAAR 110
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H +V +L+K G NA+ +TP +AI DIA
Sbjct: 111 EGHLEIVEVLLKA-----GADVNAQDKFGKTPFDLAIREGHEDIA 150
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA 119
G T LH+A R H I E+L + + + + G+TP +A R G I + K A
Sbjct: 101 GYTPLHLAAR-EGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + G T LH+A R H I E+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKA 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + + G TPLH+AAR G IV +LK + D +G TPL
Sbjct: 70 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H A R H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 118 HLAAREGHLEIVEVLLKA-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 25/171 (14%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + G+T LH+A R H I E+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARV-GHLEIVEVLLKN 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE-GNTP 144
+ + ++ G TPLH+AA+ G IV +LKY + DD G+TP
Sbjct: 70 GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN-------------ADDTIGSTP 116
Query: 145 LHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
LH A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 117 LHLAADTGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 23/165 (13%)
Query: 31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
+LL R G + ++ ++ ++ +T G T LH+A H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAAS-NGHLEIVEVLLKNGADVN 74
Query: 91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
++ G TPLH+AA G IV +LK+ + D++G+TPLH A +
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKHGADV------------NAYDNDGHTPLHLAAK 122
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 123 YGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + G T LH+A F H I E+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHF-GHLEIVEVLLKN 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + + G TPLH+AAR G IV +LK NG + + +D G TPL
Sbjct: 70 GADVNAKDSLGVTPLHLAARRGHLEIVEVLLK------NGAD------VNASDSHGFTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 191
H A + H +V +L+ K+ + + +T I+ID+ D+A
Sbjct: 118 HLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 23/170 (13%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + G T LH+A + H I E+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLA-AIKGHLEIVEVLLKH 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + + G+TPLH+AA G IV +LK NG + + TD G TPL
Sbjct: 70 GADVNAADKMGDTPLHLAALYGHLEIVEVLLK------NGAD------VNATDTYGFTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 118 HLAADAGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
+LL R G + ++ ++ ++ +T G T LH+A + H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATY-GHLEIVEVLLKHGADVN 74
Query: 91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
+ G TPLH+AA +G IV +LK+ + D G+TPLH A
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADV------------NAVDTWGDTPLHLAAI 122
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 123 MGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
+LL R G + ++ ++ ++ +T G T LH+A + H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATY-GHLEIVEVLLKHGADVN 74
Query: 91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
+ G TPLH+AA +G IV +LK+ + D G+TPLH A
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADV------------NAVDTWGDTPLHLAAI 122
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 123 MGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 23/170 (13%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ +T G+T LH+A + H I E+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAT-DWLGHTPLHLAAK-TGHLEIVEVLLKY 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + + G TPLH+AA G IV +LK+ + D EG TPL
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV------------NAKDYEGFTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H A + H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 118 HLAAYDGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + +G+T LH+A + H I E+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLA-AWIGHPEIVEVLLKH 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + + G TPLH+AA G IV +LKY + D G TPL
Sbjct: 70 GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN------------AQDAYGLTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 118 HLAADRGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
+LL R G + ++ ++ ++ + + G T LH+A H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLA-AVSGHLEIVEVLLKHGADVD 74
Query: 91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
+ G TPLH+AA G IV +LKY + D G+TPLH A
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGADV------------NAFDMTGSTPLHLAAD 122
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 123 EGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH+A H I E+L + + + + G TPLH+AA G IV +LKY
Sbjct: 80 GFTPLHLA-AMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRN 151
+ N + ++ I+ D GN L + RN
Sbjct: 139 V-NAQDKFGKTAFDISIDNGNEDLAKSCRN 167
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 23/165 (13%)
Query: 31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
+LL R G + ++ ++ ++ + G T LH+A + H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLA-AYSGHLEIVEVLLKHGADVD 74
Query: 91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
++ G TPLH+AA G IV +LK NG + + D +G TPLH A +
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLK------NGAD------VNAMDSDGMTPLHLAAK 122
Query: 151 NKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
+ +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 123 WGYLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + G T LH+ + H I E+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NANDWFGITPLHLVVN-NGHLEIIEVLLKY 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + ++ G TPLH+AA G IV +LKY + D +G TPL
Sbjct: 70 AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN------------AMDYQGYTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H A + H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 118 HLAAEDGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + M G T LH+A + R H I E+L +
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKH 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + ++ G TPLH+AA VG IV +L+Y + N + ++ I+ D GN L
Sbjct: 70 GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDL 128
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 21/100 (21%)
Query: 96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
G TPLH+AA+ G IV +LK+ + +D G TPLH A H
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVN------------ASDIWGRTPLHLAATVGHLE 94
Query: 156 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
+V +L++ G NA+ +T I+ID+ D+A
Sbjct: 95 IVEVLLE-----YGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 138 DDEGNTPLHNAVRNKHENVVRMLVK 162
DD G TPLH A + H +V +L+K
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + M G T LH+A + R H I E+L +
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKH 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + ++ G TPLH+AA VG IV +L+Y + N + ++ I+ D GN L
Sbjct: 70 GADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDL 128
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 21/100 (21%)
Query: 96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
G TPLH+AA+ G IV +LK+ + +D G TPLH A H
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVN------------ASDSWGRTPLHLAATVGHLE 94
Query: 156 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
+V +L++ G NA+ +T I+ID+ D+A
Sbjct: 95 IVEVLLE-----YGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 138 DDEGNTPLHNAVRNKHENVVRMLVK 162
DD G TPLH A + H +V +L+K
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH A + HK I ++L + + + + G TPLH AA+ G IV +
Sbjct: 37 GRTPLHYAAK-EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL------ 89
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
I+ G + + D +G TPLH A + H+ +V++L+ K + ++ +TPL +
Sbjct: 90 ISKGAD------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVNTSDSDGRTPLDL 142
Query: 182 A 182
A
Sbjct: 143 A 143
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
I NG + + +D +G TPLH A + H+ +V++L+ K + ++ +TPL
Sbjct: 24 IENGAD------VNASDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHY 76
Query: 182 AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
A +I +I + +N + + T LH A
Sbjct: 77 AAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAA 111
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + M G T LH+A + R H I E+L +
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKH 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + + G TPLH+AA VG IV +L+Y + N + ++ I+ D GN L
Sbjct: 70 GADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDL 128
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
G TPLH+AA+ G IV +LK+ + D G TPLH A H
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVN------------ARDIWGRTPLHLAATVGHLE 94
Query: 156 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
+V +L++ G NA+ +T I+ID+ D+A
Sbjct: 95 IVEVLLE-----YGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 138 DDEGNTPLHNAVRNKHENVVRMLVK 162
DD G TPLH A + H +V +L+K
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
T LH+A F H I + L +R + +N K ETPLH+AAR G + +L+ +
Sbjct: 16 TPLHVA-SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 124 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
+ DD+ TPLH A R H N+V++L++ + P A TPL IA
Sbjct: 75 ----------AKAKDDQ--TPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIA 120
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH+A+ N ++ +L R S W G TPLHIAA+ + ++L+Y
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQY--- 234
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ-TPLS 180
G + ES+ +G TPLH A + H +V +L+ K G L N TPL
Sbjct: 235 ---GGSANAESV------QGVTPLHLAAQEGHAEMVALLLSKQAN--GNLGNKSGLTPLH 283
Query: 181 IAIDSSLTDIACFII 195
+ +A +I
Sbjct: 284 LVAQEGHVPVADVLI 298
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH+ + H + ++L + ++ G TPLH+A+ G+ +V +L++
Sbjct: 278 GLTPLHLVAQ-EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
+ T+ G +PLH A + H ++V +L+K P +++ TPL+I
Sbjct: 337 VNAKTKL------------GYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAI 383
Query: 182 AID---SSLTDIACFIIDQ 197
A S+TD+ + D+
Sbjct: 384 AKRLGYISVTDVLKVVTDE 402
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
T LHMA R H + + L + + + +TPLH AAR+G +V +L+
Sbjct: 49 TPLHMAAR-AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE------ 101
Query: 124 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI 183
+ P + G+TPLH A R H V L++K+ + TPL +A
Sbjct: 102 --NNANP----NLATTAGHTPLHIAAREGHVETVLALLEKEA-SQACMTKKGFTPLHVAA 154
Query: 184 DSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 221
+A +++ R N LT LH AV N
Sbjct: 155 KYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVAVHHNN 191
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + G T LH+A + H I E+L +
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADV-NAADVVGWTPLHLA-AYWGHLEIVEVLLKN 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + + G TPLH+AA G IV +LK NG + + DD G TPL
Sbjct: 70 GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK------NGAD------VNAKDDNGITPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H A H +V +L+K G NA+ +T I+I++ D+A
Sbjct: 118 HLAANRGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISINNGNEDLA 162
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 31 ELLNVLRRG--DEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSL 88
+LL R G DE +I + G N + G T LHMA H I E+L R +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADANAYD---HYGRTPLHMAAAV-GHLEIVEVLLRNGAD 60
Query: 89 LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA 148
+ + G TPLH+AA +G IV +LKY + D G TPL+ A
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV------------NAKDATGITPLYLA 108
Query: 149 VRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H +V +L+K G NA+ +T I+ID D+A
Sbjct: 109 AYWGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDIGNEDLA 150
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH+A HK + ++L + + + G+TPLH+AA G +V +L
Sbjct: 37 GKTPLHLAAE-NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG-- 93
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
++P + D +G TPLH A N H+ VV++L+ + P ++ +TPL +
Sbjct: 94 ------ADPNA----KDSDGKTPLHLAAENGHKEVVKLLLSQGADP-NTSDSDGRTPLDL 142
Query: 182 A 182
A
Sbjct: 143 A 143
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 121 AITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 174
A NG + + LL +D +G TPLH A N H+ VV++L+ + P ++
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 175 EQTPLSIAIDSSLTDIACFIIDQ 197
+TPL +A ++ ++ ++ Q
Sbjct: 71 -KTPLHLAAENGHKEVVKLLLSQ 92
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + G T LH+A F H I E+L +
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLA-AFNGHLEIVEVLLKN 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + + G TPL +AA G IV +LK NG + + D EG+TPL
Sbjct: 70 GADVNAVDHAGMTPLRLAALFGHLEIVEVLLK------NGAD------VNANDMEGHTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 118 HLAAMFGHLEIVEVLLKN-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH A HK I ++L + + + G TPLH AA G IV +L
Sbjct: 37 GRTPLHYAAE-NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG-- 93
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
++P + D +G TPLH A N H+ +V++L+ K P ++ +TPL +
Sbjct: 94 ------ADPNA----KDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NTSDSDGRTPLDL 142
Query: 182 AIDSSLTDIACFIIDQ 197
A + +I + Q
Sbjct: 143 AREHGNEEIVKLLEKQ 158
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 121 AITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 174
A NG + + LL +D +G TPLH A N H+ +V++L+ K P ++
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 175 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
+TPL A ++ +I ++ + + N + + T LH A
Sbjct: 71 -RTPLHYAAENGHKEIVKLLLSKGADP-NAKDSDGRTPLHYAA 111
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
+LL R G + ++ ++ ++ + +GNT LH+A + +H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADY-DHLEIVEVLLKHGADVN 74
Query: 91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
++ G TPLH+AA G IV +LK+ A N + ++ I+ D GN L
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 21/115 (18%)
Query: 81 ILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE 140
IL + + N+ KG TPLH+AA IV +LK+ + D++
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN------------AHDND 79
Query: 141 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
G+TPLH A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 23/170 (13%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ ++ G T LH+A F H I E+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYF-GHLEIVEVLLKN 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + ++ G TPLH+AA G +V +LK NG + + D G TPL
Sbjct: 70 GADVNADDSLGVTPLHLAADRGHLEVVEVLLK------NGAD------VNANDHNGFTPL 117
Query: 146 HNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
H A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 118 HLAANIGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH A HK + ++L + + + + G TPLH AA G +V +
Sbjct: 37 GRTPLHHAAE-NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL------ 89
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
I+ G + + D +G TPLH+A N H+ VV++L+ K + ++ +TPL +
Sbjct: 90 ISKGAD------VNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDL 142
Query: 182 A 182
A
Sbjct: 143 A 143
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
I NG + + +D +G TPLH+A N H+ VV++L+ K + ++ +TPL
Sbjct: 24 IENGAD------VNASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHH 76
Query: 182 AIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 217
A ++ ++ +I + +N + + T LH A
Sbjct: 77 AAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAA 111
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH+A R H + ++L + + + G TPLH+AAR G +V +L
Sbjct: 2 GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
E + + D G TPLH A RN H VV++L++ + + +TPL +
Sbjct: 56 -------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHL 107
Query: 182 AIDSSLTDIACFIID 196
A + ++ +++
Sbjct: 108 AARNGHLEVVKLLLE 122
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH+A R H + ++L + + + G TPLH+AAR G +V +L
Sbjct: 2 GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
E + + D G TPLH A RN H VV++L++
Sbjct: 56 -------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
G TPLH+AAR G +V +L E + + D G TPLH A RN H
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHLE 49
Query: 156 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 196
VV++L++ + + +TPL +A + ++ +++
Sbjct: 50 VVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 19/109 (17%)
Query: 79 PEILRRRDSLLRKNN-----WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
PEI RR LLR N G +H AAR G + T+L++ +
Sbjct: 50 PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN---------- 97
Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
I D+EGN PLH A + H VV LVK +G+ N+ T +A
Sbjct: 98 --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 79 PEILRRRDSLLRKNN-----WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
PEI RR LLR N G +H AAR G + T+L++ ++
Sbjct: 50 PEIARRL--LLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEF------------QAD 95
Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
+ I D+EGN PLH A + H VV LVK +G+ N+ T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 21/115 (18%)
Query: 81 ILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE 140
IL + + N++ G TPLH+AA +G IV +LK NG + + T +
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK------NGAD------VNATGNT 79
Query: 141 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
G TPLH A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + G+T LH+A H I E+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVNAN-DYWGHTPLHLAAML-GHLEIVEVLLKN 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + G TPLH+AA IV +LK+ + N + ++ I+ D GN L
Sbjct: 70 GADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 128
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 19/109 (17%)
Query: 79 PEILRRRDSLLRKNN-----WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
PEI RR LLR N G +H AAR G + T+L++ +
Sbjct: 50 PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN---------- 97
Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
I D+EGN PLH A + H VV LVK +G+ N+ T +A
Sbjct: 98 --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 79 PEILRRRDSLLRKNN-----WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
PEI RR LLR N G +H AAR G + T+L++ ++
Sbjct: 50 PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF------------QAD 95
Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
+ I D+EGN PLH A + H VV LVK +G+ N+ T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 24/165 (14%)
Query: 31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRR----RD 86
+LL R G + ++ ++ T G + LH+A ++ H E+L R RD
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRD 61
Query: 87 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 146
+ + + TPLH+AA G IV +LK+ G + + +L++ T LH
Sbjct: 62 ARTKVD----RTPLHMAASEGHANIVEVLLKH------GADVNAKDMLKM------TALH 105
Query: 147 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 191
A + H+ VV +L+K + + +T I+ID+ D+A
Sbjct: 106 WATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLA 149
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 19/109 (17%)
Query: 79 PEILRRRDSLLRKNN-----WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
PEI RR LLR N G +H AAR G + T+L E ++
Sbjct: 50 PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL------------ENQAD 95
Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
+ I D+EGN PLH A + H VV LVK +G+ N+ T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 25 PTTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRR 84
P MD ++ R G+ + L +N + G + LH A R + E+L
Sbjct: 3 PEFMD-DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIM 60
Query: 85 RDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTP 144
R + + N +TPLH+AA G IV +L+Y I ++ GN P
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN------------AVNEHGNVP 108
Query: 145 LHNAVRNKHENVVRMLV 161
LH A + V LV
Sbjct: 109 LHYACFWGQDQVAEDLV 125
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 131 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 190
E+ L DD G +PLH A R VV ML+ + + +N + TPL +A DI
Sbjct: 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAASHGHRDI 87
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
G TPLH+AA++G IV +LKY + D+ G TPLH A H
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVN------------AEDNFGITPLHLAAIRGHLE 94
Query: 156 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
+V +L+K G NA+ +T I+ID+ D+A
Sbjct: 95 IVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + + G T LH+A + + +++ +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ ++N+ G TPLH+AA G IV +LK+ A N + ++ I+ D GN L
Sbjct: 71 ADVNAEDNF-GITPLHLAAIRGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDL 128
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 59 SPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY 118
S GNT LH A + + + + ++L + + ++ G TPLH+AA+ G IV +L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 119 APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 163
+ R D GNTP H A +N H +V++L K
Sbjct: 65 GADVN----------ARSKD--GNTPEHLAKKNGHHEIVKLLDAK 97
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 140 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII---- 195
+GNTPLHNA +N H V+ L+ K + + TPL +A + +I ++
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 196 DQRPESLNHRLPEELT 211
D S + PE L
Sbjct: 67 DVNARSKDGNTPEHLA 82
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 58 MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKG---ETPLHIAARVGDPAIVST 114
++ G++ LH+AI + E++R+ L N++ +TPLH+A P I
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 167
+L G +PE + D GNTPLH A V +L + P
Sbjct: 64 LL--------GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
T LH+A+ N I E L +++G TPLH+A G A V + +
Sbjct: 47 TPLHLAV-ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC---- 101
Query: 124 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ-----TP 178
T S+L+ T+ G+T LH A + + +V +LV LG NA++ T
Sbjct: 102 --TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-----LGADVNAQEPCNGRTA 154
Query: 179 LSIAIDSSLTDIACFII 195
L +A+D D+ ++
Sbjct: 155 LHLAVDLQNPDLVSLLL 171
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 16/107 (14%)
Query: 61 RGNTVLHMAIRFRNHKVIPEILR-----RRDSLLRKNNWKGETPLHIAARVGDPAIVSTI 115
RGNT LH+A + + + S+L+ N+ G T LH+A+ G IV +
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136
Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
+ + EP + G T LH AV ++ ++V +L+K
Sbjct: 137 VSLGADV---NAQEPCN--------GRTALHLAVDLQNPDLVSLLLK 172
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 135 RITDDEGNTPLHNAVRNKHE----NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 190
++T+D G++ LH A+ ++ + V+R VK D L + NN +QTPL +A+ ++ +I
Sbjct: 3 QLTED-GDSFLHLAIIHEEKALTMEVIRQ-VKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60
Query: 191 A 191
A
Sbjct: 61 A 61
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 58 MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKG---ETPLHIAARVGDPAIVST 114
++ G++ LH+AI + E++R+ L N++ +TPLH+A P I
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 167
+L G +PE + D GNTPLH A V +L + P
Sbjct: 61 LL--------GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
T LH+A+ N I E L +++G TPLH+A G A V + +
Sbjct: 44 TPLHLAV-ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC---- 98
Query: 124 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ-----TP 178
T S+L+ T+ G+T LH A + + +V +LV LG NA++ T
Sbjct: 99 --TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-----LGADVNAQEPCNGRTA 151
Query: 179 LSIAIDSSLTDIACFII 195
L +A+D D+ ++
Sbjct: 152 LHLAVDLQNPDLVSLLL 168
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 16/107 (14%)
Query: 61 RGNTVLHMAIRFRNHKVIPEILR-----RRDSLLRKNNWKGETPLHIAARVGDPAIVSTI 115
RGNT LH+A + + + S+L+ N+ G T LH+A+ G IV +
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 133
Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
+ + EP + G T LH AV ++ ++V +L+K
Sbjct: 134 VSLGADV---NAQEPCN--------GRTALHLAVDLQNPDLVSLLLK 169
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 139 DEGNTPLHNAVRNKHE----NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 191
++G++ LH A+ ++ + V+R VK D L + NN +QTPL +A+ ++ +IA
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQ-VKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 58
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + G T LH+A +H I E+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAEDKVGLTPLHLA-AMNDHLEIVEVLLKN 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + + GETPLH+ A G IV +LK+ A N + ++ I+ D GN L
Sbjct: 70 GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 21/100 (21%)
Query: 96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
G TPLH+AA IV +LK NG + + D G TPLH H
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLK------NGAD------VNAIDAIGETPLHLVAMYGHLE 94
Query: 156 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
+V +L+K G NA+ +T I+ID+ D+A
Sbjct: 95 IVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 13/131 (9%)
Query: 31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
++ R G+ + L +N + G + LH A R + E+L R + +
Sbjct: 3 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIMRGARIN 61
Query: 91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
N +TPLH+AA G IV +L+Y I ++ GN PLH A
Sbjct: 62 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN------------AVNEHGNVPLHYACF 109
Query: 151 NKHENVVRMLV 161
+ V LV
Sbjct: 110 WGQDQVAEDLV 120
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 131 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 190
E+ L DD G +PLH A R VV ML+ + + +N + TPL +A DI
Sbjct: 24 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAASHGHRDI 82
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 74 NHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL 133
NH + L + +L+ + +G T LH+AA+ G +V +L +NG
Sbjct: 55 NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL------SNGQMD----- 103
Query: 134 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 191
+ DD G TP+ A KH ++V++L+ K + +N E L A S DIA
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIA 160
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT-------------------- 137
+PLH AA G I +++ I +E + L+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 138 -DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 196
D EG+T LH A + H VV+ L+ ++ + ++ TP+ A + D+ ++
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL- 131
Query: 197 QRPESLNHRLPEELTLLHSAVM 218
+ +N R EE LH A
Sbjct: 132 SKGSDINIRDNEENICLHWAAF 153
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 63 NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAI 122
N LH A F I EIL L N G++PLHIAAR V L +
Sbjct: 145 NICLHWA-AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 123 TNGTESEPESLLRITDDEGNTPLHNAVRN 151
T + + EG TPL A N
Sbjct: 204 T------------LKNKEGETPLQCASLN 220
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 24/145 (16%)
Query: 60 PRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA 119
G+T LH+A + +++V+ +L + + G TP+ A +V +L
Sbjct: 75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134
Query: 120 PAIT---------------NGTESEPESLLRITDD------EGNTPLHNAVR-NKHENVV 157
I +G E LL D G++PLH A R N+++ VV
Sbjct: 135 SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVV 194
Query: 158 RMLVKKDRIPLGYLNNAEQTPLSIA 182
L + + L N +TPL A
Sbjct: 195 LFLSRDSDVTLK--NKEGETPLQCA 217
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 40/207 (19%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPR------------GNTVLHMAIRFR 73
TT+ E L + R D H + R F MS R GNT LH ++
Sbjct: 65 TTVLQEWLRLACRSDAH--PELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHA 122
Query: 74 NHKVIPEILRRRDSLLRKNNWKGETPLHIAA-----------------RVGD-PAIVSTI 115
N V+ ++L + K N G +P+ + A R+G+ A S
Sbjct: 123 NFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA 182
Query: 116 LKYAP--AITNGTESEPESLL------RITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 167
+ A A+++G ++LL + DD+G+T L A + H+ + +L+
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 168 LGYLNNAEQTPLSIAIDSSLTDIACFI 194
+ + T L +A+D+ ++IA +
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 63 NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAI 122
N LH A + E+L + SLL + + G PLH + I S +L
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL------ 56
Query: 123 TNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP-LGYLNNAEQTPLSI 181
++ E +L DD G TP H A + VV+ L + P L + N T L +
Sbjct: 57 ---SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Query: 182 AIDSSLTDIACFIID 196
A+ +++ F+I+
Sbjct: 114 AVGKKWFEVSQFLIE 128
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 25/161 (15%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKN--NWKGETPLHIAARVGDPAIVSTILK-- 117
G LH ++ F+ H++ +L + +++ + + G TP HIA VG+ +V ++
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 118 YAPAITNGTES---------------------EPESLLRITDDEGNTPLHNAVRNKHENV 156
P + T E + +RI D PLH A +
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 157 VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
+ +L + + + + TPL A+ D A ++++
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 17/105 (16%)
Query: 93 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 152
N +GET LHIA+ GD V +L+ NG S+P + D G TPLH A +
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ------NG--SDP----NVKDHAGWTPLHEACNHG 54
Query: 153 HENVVRMLVKKDRI--PLGYLNNAEQTPLSIAIDSSLTDIACFII 195
H VV +L++ + GY N+ +PL A + DI ++
Sbjct: 55 HLKVVELLLQHKALVNTTGYQND---SPLHDAAKNGHVDIVKLLL 96
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 61 RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
RG T+LH+A + E L + S + G TPLH A G +V +L++
Sbjct: 9 RGETLLHIA-SIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-- 65
Query: 121 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV 161
++L+ T + ++PLH+A +N H ++V++L+
Sbjct: 66 ----------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH A + KV+ E+L + +L+ ++ ++PLH AA+ G IV +L Y +
Sbjct: 43 GWTPLHEACNHGHLKVV-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 63 NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAI 122
N LH A + E+L + SLL + + G PLH + I S +L
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL------ 56
Query: 123 TNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP-LGYLNNAEQTPLSI 181
++ E +L DD G TP H A + VV+ L + P L + N T L +
Sbjct: 57 ---SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Query: 182 AIDSSLTDIACFIID 196
A+ +++ F+I+
Sbjct: 114 AVGKKWFEVSQFLIE 128
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 25/161 (15%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKN--NWKGETPLHIAARVGDPAIVSTILK-- 117
G LH ++ F+ H++ +L + +++ + + G TP HIA VG+ +V ++
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 118 YAPAITNGTES---------------------EPESLLRITDDEGNTPLHNAVRNKHENV 156
P + T E + +RI D PLH A +
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 157 VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
+ +L + + + + TPL A+ D A ++++
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 63 NTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAI 122
N LH A + E+L + SLL + + G PLH + I S +L
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL------ 56
Query: 123 TNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP-LGYLNNAEQTPLSI 181
++ E +L DD G TP H A + VV+ L + P L + N T L +
Sbjct: 57 ---SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Query: 182 AIDSSLTDIACFIID 196
A+ +++ F+I+
Sbjct: 114 AVGKKWFEVSQFLIE 128
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 25/161 (15%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKN--NWKGETPLHIAARVGDPAIVSTILK-- 117
G LH ++ F+ H++ +L + +++ + + G TP HIA VG+ +V ++
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 118 YAPAITNGTES---------------------EPESLLRITDDEGNTPLHNAVRNKHENV 156
P + T E + +RI D PLH A +
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 157 VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
+ +L + + + + TPL A+ D A ++++
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 55 FSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVST 114
+ ++ G T LH A H++ +L + K++++ T +H AA G+ ++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHRAAAKGNLKMIH- 156
Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 174
IL Y A TN I D EGNTPLH A + ++LV + + N
Sbjct: 157 ILLYYKASTN-----------IQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKE 204
Query: 175 EQTPLSIA 182
E+TPL +A
Sbjct: 205 EKTPLQVA 212
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 20/147 (13%)
Query: 87 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 146
SL + + T LH A G IV +L+ + + DD G +PLH
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------------KDDAGWSPLH 78
Query: 147 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID--QRPESLNH 204
A + +V+ L+ K + +N TPL A + +IA +++ P++ +H
Sbjct: 79 IAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 205 RLPEELTLLHSAVMRQNYGEPMIFISL 231
E T +H A + N MI I L
Sbjct: 138 Y---EATAMHRAAAKGNL--KMIHILL 159
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
T LH A H I E L + + + G +PLHIAA G IV +L +
Sbjct: 42 TALHWACS-AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Query: 124 NGTESEPESLLRITDDEGNTPLHNAV-RNKHENVVRML 160
+ G TPLH A +N+HE V +L
Sbjct: 101 ------------AVNQNGCTPLHYAASKNRHEIAVMLL 126
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 131 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 190
+SL TD + T LH A H +V L++ +P+ ++A +PL IA + +I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGRDEI 88
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G++ + AI N +++ +L ++ KN + E PLH AA + D IV +L
Sbjct: 31 GHSASYYAIADNNVRLVCTLL---NAGALKNLLENEFPLHQAATLEDTKIVKILL----- 82
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
+G + DD+GNT L+ AV + + V++ VKK+ Y +T
Sbjct: 83 -FSGLDDSQ------FDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYH 135
Query: 182 AIDSSLTDIACFIIDQRPESLN 203
A+ + I + + + P + +
Sbjct: 136 AVXLNDVSIVSYFLSEIPSTFD 157
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 55 FSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVST 114
+ ++ G T LH A H++ +L + K++++ T +H AA G+ ++
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHRAAAKGNLKMIH- 157
Query: 115 ILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 174
IL Y A TN I D EGNTPLH A + ++LV + + N
Sbjct: 158 ILLYYKASTN-----------IQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKE 205
Query: 175 EQTPLSIA 182
E+TPL +A
Sbjct: 206 EKTPLQVA 213
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 20/147 (13%)
Query: 87 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 146
SL + + T LH A G IV +L+ + + DD G +PLH
Sbjct: 32 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------------KDDAGWSPLH 79
Query: 147 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID--QRPESLNH 204
A + +V+ L+ K + +N TPL A + +IA +++ P++ +H
Sbjct: 80 IAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 138
Query: 205 RLPEELTLLHSAVMRQNYGEPMIFISL 231
E T +H A + N MI I L
Sbjct: 139 Y---EATAMHRAAAKGNL--KMIHILL 160
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
T LH A H I E L + + + G +PLHIAA G IV +L +
Sbjct: 43 TALHWACS-AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Query: 124 NGTESEPESLLRITDDEGNTPLHNAV-RNKHENVVRML 160
+ G TPLH A +N+HE V +L
Sbjct: 102 ------------AVNQNGCTPLHYAASKNRHEIAVMLL 127
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 131 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 190
+SL TD + T LH A H +V L++ +P+ ++A +PL IA + +I
Sbjct: 31 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGRDEI 89
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 31 ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLR 90
+LL G + ++ ++ ++ +T G T LH+A +++ E+L + + +
Sbjct: 9 KLLEAAAAGQDDEVRILMANGADVNAT-DDNGLTPLHLAAANGQLEIV-EVLLKNGADVN 66
Query: 91 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 150
++ G TPLH+AA G IV +LK+ + D G TPLH A
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHGADV------------NAYDRAGWTPLHLAAL 114
Query: 151 NKHENVVRMLVK 162
+ +V +L+K
Sbjct: 115 SGQLEIVEVLLK 126
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH+A + H I E+L + + + + G TPLH+AA G IV +LK+
Sbjct: 72 GITPLHLA-AYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Query: 122 I 122
+
Sbjct: 131 V 131
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 137 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
TDD G TPLH A N +V +L+ K+ + ++A TPL +A
Sbjct: 35 TDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDSAGITPLHLA 79
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 77 VIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 136
VI + + + SL + + GET LH+AAR +L+ A A N I
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADAN-----------I 85
Query: 137 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
D+ G TPLH AV + V ++L++ L + TPL +A
Sbjct: 86 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 96 GETPLHIAARVGDPAIV--STILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 153
G TPL IA+ G S + APA+ + + SL TD G T LH A R
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69
Query: 154 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL 213
+ + L++ +N +TPL A+ + + +I R L+ R+ + T L
Sbjct: 70 SDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 16/160 (10%)
Query: 38 RGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGE 97
R D + L A NI M G T LH A+ V ++R R + L G
Sbjct: 69 RSDAAKRLLEASADANIQDNM---GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Query: 98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
TPL +AAR+ ++ ++ + DD G + LH A + +
Sbjct: 126 TPLILAARLAVEGMLEDLINSHADVN------------AVDDLGKSALHWAAAVNNVDAA 173
Query: 158 RMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
+L+ K+ NN E+TPL +A + A ++D
Sbjct: 174 VVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 77 VIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 136
VI + + + SL + + GET LH+AAR +L+ A A N I
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADAN-----------I 86
Query: 137 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
D+ G TPLH AV + V ++L++ L + TPL +A
Sbjct: 87 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 132
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 96 GETPLHIAARVGDPAIV--STILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 153
G TPL IA+ G S + APA+ + + SL TD G T LH A R
Sbjct: 11 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 70
Query: 154 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL 213
+ + L++ +N +TPL A+ + + +I R L+ R+ + T L
Sbjct: 71 SDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 129
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 16/160 (10%)
Query: 38 RGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGE 97
R D + L A NI M G T LH A+ V ++R R + L G
Sbjct: 70 RSDAAKRLLEASADANIQDNM---GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 126
Query: 98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
TPL +AAR+ ++ ++ + + DD G + LH A + +
Sbjct: 127 TPLILAARLAVEGMLEDLIN------------SHADVNAVDDLGKSALHWAAAVNNVDAA 174
Query: 158 RMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
+L+ K+ NN E+TPL +A + A ++D
Sbjct: 175 VVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 213
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 77 VIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 136
VI + + + SL + + GET LH+AAR +L+ A A N I
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADAN-----------I 53
Query: 137 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
D+ G TPLH AV + V ++L++ L + TPL +A
Sbjct: 54 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 99
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 119 APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP 178
APA+ + + SL TD G T LH A R + + L++ +N +TP
Sbjct: 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTP 61
Query: 179 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELT 211
L A+ + + +I R L+ R+ + T
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTT 94
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 16/160 (10%)
Query: 38 RGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGE 97
R D + L A NI M G T LH A+ V ++R R + L G
Sbjct: 37 RSDAAKRLLEASADANIQDNM---GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 93
Query: 98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
TPL +AAR+ ++ ++ + + DD G + LH A + +
Sbjct: 94 TPLILAARLAVEGMLEDLIN------------SHADVNAVDDLGKSALHWAAAVNNVDAA 141
Query: 158 RMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
+L+ K+ NN E+TPL +A + A ++D
Sbjct: 142 VVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 77 VIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 136
VI + + + SL + + GET LH+AAR +L E + I
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL------------EASADAXI 50
Query: 137 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
D+ G TPLH AV + V ++L++ L + TPL +A
Sbjct: 51 QDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILA 96
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH A+ V +LR R + L G TPL +AAR+ ++ ++
Sbjct: 55 GRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLIN---- 110
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
+ + DD G + LH A + + +L+ K+ NN E+TPL +
Sbjct: 111 --------SHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNKEETPLFL 161
Query: 182 AIDSSLTDIACFIIDQ 197
A + A ++D
Sbjct: 162 AAREGSYETAKVLLDH 177
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 56 STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTI 115
+ ++ G T LH A H++ +L + K+++ T +H AA G+ +V +
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVHIL 158
Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 175
L Y A TN I D EGNTPLH A + + LV + + N E
Sbjct: 159 LFY-KASTN-----------IQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEE 205
Query: 176 QTPLSIA 182
+TPL +A
Sbjct: 206 KTPLQVA 212
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
T LH A H I E L + + + G +PLHIAA G IV +L +
Sbjct: 42 TALHWACS-AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Query: 124 NGTESEPESLLRITDDEGNTPLHNAV-RNKHENVVRML 160
+ G TPLH A +N+HE V +L
Sbjct: 101 ------------AVNQNGCTPLHYAASKNRHEIAVMLL 126
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 87 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 146
SL + + T LH A G IV +L+ + + DD G +PLH
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------------KDDAGWSPLH 78
Query: 147 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID--QRPESLNH 204
A + +V+ L+ K + +N TPL A + +IA +++ P++ +H
Sbjct: 79 IAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 205 RLPEELTLLHSAVMRQN 221
+ T +H A + N
Sbjct: 138 Y---DATAMHRAAAKGN 151
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 131 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 190
+SL TD + T LH A H +V L++ +P+ ++A +PL IA + +I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGXDEI 88
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 56 STMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTI 115
+ ++ G T LH A H++ +L + K+++ T +H AA G+ +V +
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVHIL 158
Query: 116 LKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 175
L Y A TN I D EGNTPLH A + + LV + + N E
Sbjct: 159 LFY-KASTN-----------IQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEE 205
Query: 176 QTPLSIA 182
+TPL +A
Sbjct: 206 KTPLQVA 212
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 87 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 146
SL + + T LH A G IV +L+ + + DD G +PLH
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------------KDDAGWSPLH 78
Query: 147 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID--QRPESLNH 204
A + +V+ L+ K + +N TPL A + +IA +++ P++ +H
Sbjct: 79 IAASAGRDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 205 RLPEELTLLHSAVMRQN 221
+ T +H A + N
Sbjct: 138 Y---DATAMHRAAAKGN 151
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 64 TVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
T LH A H I E L + + + G +PLHIAA G IV +L +
Sbjct: 42 TALHWACS-AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVN 100
Query: 124 NGTESEPESLLRITDDEGNTPLHNAV-RNKHENVVRML 160
+ G TPLH A +N+HE V +L
Sbjct: 101 ------------AVNQNGCTPLHYAASKNRHEIAVMLL 126
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 131 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 190
+SL TD + T LH A H +V L++ +P+ ++A +PL IA + +I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGRDEI 88
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 66 LHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNG 125
LH+A + + H + + L ++ K + G TPL A G +V+ +L++ +I
Sbjct: 123 LHLACQ-QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN-- 179
Query: 126 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV 161
++++GNT LH AV KH VV +L+
Sbjct: 180 ----------ASNNKGNTALHEAVIEKHVFVVELLL 205
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
G +PLH+AA G ++ +LK+ G + +++ PLH A + H
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGA--NAGARNADQAV----------PLHLACQQGHFQ 133
Query: 156 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS 215
VV+ L+ + P + + TPL A ++ ++ Q S+N + T LH
Sbjct: 134 VVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLL-QHGASINASNNKGNTALHE 191
Query: 216 AVMRQN 221
AV+ ++
Sbjct: 192 AVIEKH 197
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 126 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS 185
T E E+++ TD+EG TPL A + VV L++ P L ++ LS+A
Sbjct: 37 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 95
Query: 186 SLTDIACFIID 196
TDI ++D
Sbjct: 96 GYTDIVKMLLD 106
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 126 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS 185
T E E+++ TD+EG TPL A + VV L++ P L ++ LS+A
Sbjct: 19 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 77
Query: 186 SLTDIACFIID 196
TDI ++D
Sbjct: 78 GYTDIVKMLLD 88
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 126 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS 185
T E E+++ TD+EG TPL A + VV L++ P L ++ LS+A
Sbjct: 21 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 79
Query: 186 SLTDIACFIID 196
TDI ++D
Sbjct: 80 GYTDIVKMLLD 90
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 64 TVLHMAIRF--RNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
T LH+A+R R I + L + L K KG T LH + + +L+ +
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
I I ++ G TPL A R KHE+ +L +
Sbjct: 231 I------------EIANESGETPLDIAKRLKHEHCEELLTQ 259
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 66 LHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNG 125
L +A + + + + ++L+ + + GET LHIAA + +++ AP +
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV-- 64
Query: 126 TESEPESLLRITDD--EGNTPLHNAVRNKHENVVRMLVKK 163
EP +T + EG T LH AV N++ N+VR L+ +
Sbjct: 65 --FEP-----MTSELYEGQTALHIAVINQNVNLVRALLAR 97
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 24/97 (24%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSL----------LRKNN--WKGETPLHIAARVGDP 109
G T LH+A+ +N ++ +L R S+ R +N + GE PL AA VG
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 110 AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 146
IV ++++ I R D GNT LH
Sbjct: 135 EIVRLLIEHGADI------------RAQDSLGNTVLH 159
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 26 TTMDHELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRR 85
+ + +LL R G + ++ ++ ++ + G T L++A H I E+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATA-HGHLEIVEVLLKN 69
Query: 86 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
+ + + G TPLH+AA +G I +LK+ + D G T
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN------------AQDKFGKTAF 117
Query: 146 HNAVRNKHENVVRMLVK 162
++ N +E++ +L K
Sbjct: 118 DISIGNGNEDLAEILQK 134
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 22/127 (17%)
Query: 78 IPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP---------------AI 122
+ E LR+ D+L+ K + +G TPL A+ G+ V +L++ A
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS 77
Query: 123 TNGTES------EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ 176
T G E + + I D G TPL AVR H V L+ + L ++
Sbjct: 78 TGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGY 136
Query: 177 TPLSIAI 183
TP+ +A+
Sbjct: 137 TPMDLAV 143
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 18/169 (10%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLR--KNNWKGETPLHIAARVGDPAIVSTILKYA 119
G+T LH+A R R H +L+ R S R + + ++ PA V +
Sbjct: 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS----Q 133
Query: 120 PAITNGTESEPESL---LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE- 175
P N E E L + +G+TPLH AV +K +VR+L R LN E
Sbjct: 134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL----RDAGADLNKPEP 189
Query: 176 ---QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 221
+TPL +A+++ + ++ + R+ T L SA++R N
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPN 237
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 54 IFSTMSPRGNTVLHMAIRFRNHKVIPEIL--RRRDSLLRKNNWKGETPLHIAARVGDPAI 111
+F ++ G+T LH+A+ ++ + +L L N G+T LH+AA +G+ +
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 112 VSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
V + + + + G+T LH A R + +L++
Sbjct: 61 VEKLYAAGAGVL------------VAERGGHTALHLACRVRAHTCACVLLQ 99
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 18/169 (10%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLR--KNNWKGETPLHIAARVGDPAIVSTILKYA 119
G+T LH+A R R H +L+ R S R + + ++ PA V +
Sbjct: 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS----Q 133
Query: 120 PAITNGTESEPESL---LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE- 175
P N E E L + +G+TPLH AV +K +VR+L R LN E
Sbjct: 134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL----RDAGADLNKPEP 189
Query: 176 ---QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 221
+TPL +A+++ + ++ + R+ T L SA++R N
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPN 237
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 54 IFSTMSPRGNTVLHMAIRFRNHKVIPEIL--RRRDSLLRKNNWKGETPLHIAARVGDPAI 111
+F ++ G+T LH+A+ ++ + +L L N G+T LH+AA +G+ +
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 112 VSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 162
V + + + + G+T LH A R + +L++
Sbjct: 61 VEKLYAAGAGVL------------VAERGGHTALHLACRVRAHTCACVLLQ 99
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
TPLH A R G ++V ++KY ++P + D EG + +H A + H ++V
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYG--------ADPS----LIDGEGCSCIHLAAQFGHTSIV 125
Query: 158 RMLVKKDRIPLGYLNNAEQTPLSIA 182
L+ K + + ++ TPL A
Sbjct: 126 AYLIAKGQ-DVDMMDQNGMTPLMWA 149
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 24/112 (21%)
Query: 61 RGNTVLHMAIRFRNHKVIPEIL--------RRRDSLLRKNN----WKGETPLHIAARVGD 108
RG++ LH+AI R+ + + ++ R +K + GE PL +AA
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 109 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR---NKHENVV 157
+VS +L+ +P SL + TD +GNT LH V N EN+
Sbjct: 154 WDVVSYLLE--------NPHQPASL-QATDSQGNTVLHALVXISDNSAENIA 196
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 77 VIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 136
VI + + + SL + + G T LH+AA +L+ A A N I
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLE-ASADAN-----------I 85
Query: 137 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
D+ G TPLH AV + V ++L++ L + TPL +A
Sbjct: 86 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 16/166 (9%)
Query: 32 LLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRK 91
L R D + L A NI M G T LH A+ V ++R R + L
Sbjct: 63 LAAAYSRSDAAKRLLEASADANIQDNM---GRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 92 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 151
G TPL +AAR+ ++ ++ + + DD G + LH A
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLIN------------SHADVNAVDDLGKSALHWAAAV 167
Query: 152 KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 197
+ + +L+ K+ NN E+TPL +A + A ++D
Sbjct: 168 NNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 96 GETPLHIAARVGDPAIV--STILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 153
G TPL IA+ G S + APA+ + + SL TD G T LH A
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSR 69
Query: 154 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL 213
+ + L++ +N +TPL A+ + + +I R L+ R+ + T L
Sbjct: 70 SDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
G TPLH+AAR G IV +LK A A N + ++ I+ D GN L
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDISIDNGNEDL 83
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 138 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 191
D G+TPLH A RN H VV++L++ G NA+ +T I+ID+ D+A
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEA-----GADVNAQDKFGKTAFDISIDNGNEDLA 88
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
G TPLH+AAR G +V +L+ A A N + ++ I+ D GN L
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE-AGADVNAQDKFGKTAFDISIDNGNEDL 87
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 61 RGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP 120
+G T LH A + N ++ ++ + S K + G+TP+ +AA+ G +V +++
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 121 AI 122
++
Sbjct: 338 SV 339
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 86 DSLLRKNN--WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT 143
D RK++ +KG T LH AA+V + IV ++ E S D++G T
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNXPIVKYLV-----------GEKGSNKDKQDEDGKT 315
Query: 144 PLHNAVRNKHENVVRMLVKK 163
P+ A + VV L+++
Sbjct: 316 PIXLAAQEGRIEVVXYLIQQ 335
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 138 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 191
D G+TPLH A RN H VV++L++ + + +T I+ID+ D+A
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLA 106
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 96 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 145
G TPLH+AAR G +V +L+ A A + ++ I+ D GN L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDISIDNGNEDL 105
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH AI N+ ++ + L + + + G TPLH AA D I ++++ A
Sbjct: 54 GITALHNAICGANYSIV-DFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112
Query: 122 ITNGTESEPESLLRITD 138
I T S+ + D
Sbjct: 113 IFATTLSDGATAFEKCD 129
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T L + + F + V E+L++ S + G +P+H AAR G + ++++
Sbjct: 42 GKTALQV-MMFGSPAVALELLKQGASP-NVQDASGTSPVHDAARTGFLDTLKVLVEHGAD 99
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
+ D G+ P+H A+R H +VV L + L + + + TPL +
Sbjct: 100 VN------------ALDSTGSLPIHLAIREGHSSVVSFLAPES--DLHHRDASGLTPLEL 145
Query: 182 A 182
A
Sbjct: 146 A 146
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 93 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 152
+ G P+H+A R G ++VS + PES L D G TPL A +
Sbjct: 104 DSTGSLPIHLAIREGHSSVVSFL-------------APESDLHHRDASGLTPLELARQRG 150
Query: 153 HENVVRMLVKKDRIPL 168
+N++ +L IP+
Sbjct: 151 AQNLMDILQGHMMIPM 166
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T L + + F + V E+L++ S + G +P+H AAR G + ++++
Sbjct: 44 GKTALQV-MMFGSPAVALELLKQGASP-NVQDASGTSPVHDAARTGFLDTLKVLVEHGAD 101
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 181
+ D G+ P+H A+R H +VV L + L + + + TPL +
Sbjct: 102 VN------------ALDSTGSLPIHLAIREGHSSVVSFLAPES--DLHHRDASGLTPLEL 147
Query: 182 A 182
A
Sbjct: 148 A 148
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 93 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 152
+ G P+H+A R G ++VS + PES L D G TPL A +
Sbjct: 106 DSTGSLPIHLAIREGHSSVVSFL-------------APESDLHHRDASGLTPLELARQRG 152
Query: 153 HENVVRMLVKKDRIPL 168
+N++ +L IP+
Sbjct: 153 AQNLMDILQGHMMIPM 168
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 91 KNNWKGETPLHIAARVGD-PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 149
+ + G+TPLHIA G+ PA+ + + G E L I ++ TPLH AV
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQ---QGGRE------LDIYNNLRQTPLHLAV 54
Query: 150 RNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID-SSLTDIACFIIDQRPESLN--HRL 206
+VVR+LV P+ L+ QT +A + S T + + P +L+ R
Sbjct: 55 ITTLPSVVRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113
Query: 207 PEELTLLHSAV 217
+ LT LH AV
Sbjct: 114 YDGLTALHVAV 124
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 195
+ +DEG T LHNAV H +V+ LV+ + + ++ TPL A + + F++
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 196 D 196
+
Sbjct: 124 E 124
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
TPLH AA ++V +L++ + D G PLHNA H V
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADV------------HAKDKGGLVPLHNACSYGHYEVA 91
Query: 158 RMLVK 162
+LVK
Sbjct: 92 ELLVK 96
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 17/141 (12%)
Query: 30 HELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGN-TVLHMAIRFRN--HKVIPEILRRRD 86
H LL R D ++ I + P+ + T LH A+ + K + E+L R+
Sbjct: 180 HSLLQAAREADLAKVKKTLAL--EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237
Query: 87 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 146
+ + + N TPLH+AA ++ + K+ + + D G T LH
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG------------AKMNALDSLGQTALH 285
Query: 147 NAVRNKHENVVRMLVKKDRIP 167
A H R+L+ P
Sbjct: 286 RAALAGHLQTCRLLLSYGSDP 306
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 17/162 (10%)
Query: 10 EFGT---DYKEPTMDQELPTTMDH-ELLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTV 65
EFG D +P+ L ELL R G+E ++ + + R +T
Sbjct: 2 EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61
Query: 66 LHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNG 125
LH+A + +++ ++L + + + + G PLH A G + +LK+ +
Sbjct: 62 LHLAAGYNRVRIV-QLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-- 118
Query: 126 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 167
D TPLH A V +L+ P
Sbjct: 119 ----------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
TPLH AA ++V +L++ + D G PLHNA H V
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADV------------HAKDKGGLVPLHNACSYGHYEVA 93
Query: 158 RMLVK 162
+LVK
Sbjct: 94 ELLVK 98
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII 195
+ +DEG T LHNAV H +V+ LV+ + + ++ TPL A + + F++
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 196 D 196
+
Sbjct: 124 E 124
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
TPLH AA ++V +L++ + D G PLHNA H V
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADV------------HAKDKGGLVPLHNACSYGHYEVA 95
Query: 158 RMLVK 162
+LVK
Sbjct: 96 ELLVK 100
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 77 VIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA--PAITNGTESEP 130
+I +L +DS G+T L+IAAR+G+ +IV +L Y P I N + P
Sbjct: 271 IIANMLNAQDS-------NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 319
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 22/127 (17%)
Query: 78 IPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP---------------AI 122
+ E LR+ D+L+ K + +G TPL A+ G+ V +L++ A
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS 77
Query: 123 TNGTES------EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ 176
T G E + + I D G TPL AV H V L+ + L ++
Sbjct: 78 TGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGA-DLTTEADSGY 136
Query: 177 TPLSIAI 183
TP+ +A+
Sbjct: 137 TPMDLAV 143
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 22/117 (18%)
Query: 62 GNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 121
G T LH A+ V +LR R + L G TPL +AAR+ +V ++
Sbjct: 84 GRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT---- 139
Query: 122 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV----------KKDRIPL 168
++ + D+ G T LH A + V +L+ KD PL
Sbjct: 140 --------ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 31/133 (23%)
Query: 32 LLNVLRRGDEHQISLIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRR------- 84
LL+V R+ D + + A + + +G T LH+AI RN ++ ++
Sbjct: 76 LLDVARKTDSLKQFVNASYTDSYY-----KGQTALHIAIERRNXTLVTLLVENGADVQAA 130
Query: 85 ------RDSLLRKNNWKGETPLHIAARVGDPAIVSTILK--YAPAITNGTESEPESLLRI 136
+ + R + GE PL +AA AIV +L+ + PA +
Sbjct: 131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-----------ISA 179
Query: 137 TDDEGNTPLHNAV 149
D GNT LH V
Sbjct: 180 RDSVGNTVLHALV 192
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 141 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFI 194
G TPLHNAV+ E++V +L++ P+ N L AI S+ + F+
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL 92
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 191
+ + G TPL AV KH +V+ L++++ I + ++ +T L +A++ L IA
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 136 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 191
+ + G TPL AV KH +V+ L++++ I + ++ +T L +A++ L IA
Sbjct: 234 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 289
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 141 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFI 194
G TPLHNAV+ E++V +L++ P+ N + AI S+ + F+
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFL 112
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 97 ETPLHIAARVGDPA---IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 153
E LH+A +V + A +V I I NG + ++ +GNT LH A
Sbjct: 172 ELVLHLAVKVANQASLPLVDFI------IQNGGHLDAKAA------DGNTALHYAALYNQ 219
Query: 154 ENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
+ +++L+K R +G +N A +T L IA
Sbjct: 220 PDCLKLLLKG-RALVGTVNEAGETALDIA 247
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 65 VLHMAIRFRNHKVIP--EILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAI 122
VLH+A++ N +P + + + L G T LH AA P + +LK
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK----- 228
Query: 123 TNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 160
+L+ ++ G T L A + H+ +L
Sbjct: 229 -------GRALVGTVNEAGETALDIARKKHHKECEELL 259
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 97 ETPLHIAARVGDPA---IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 153
E LH+A +V + A +V I I NG + ++ +GNT LH A
Sbjct: 191 ELVLHLAVKVANQASLPLVDFI------IQNGGHLDAKAA------DGNTALHYAALYNQ 238
Query: 154 ENVVRMLVKKDRIPLGYLNNAEQTPLSIA 182
+ +++L+ K R +G +N A +T L IA
Sbjct: 239 PDCLKLLL-KGRALVGTVNEAGETALDIA 266
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 65 VLHMAIRFRNHKVIP--EILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAI 122
VLH+A++ N +P + + + L G T LH AA P + +LK
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK----- 247
Query: 123 TNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 160
+L+ ++ G T L A + H+ +L
Sbjct: 248 -------GRALVGTVNEAGETALDIARKKHHKECEELL 278
>pdb|1LWS|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Recognition Sequence
pdb|1LWT|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Substrate Dna (Ca2+ Free)
Length = 454
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 179 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 232
L + I L+D A F +D R SL R+ E L+ ++ EP + ++N
Sbjct: 212 LGLWIGDGLSDRATFSVDSRDTSLXERVTEYAEKLNLCAEYKDRKEPQVAKTVN 265
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 98 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 157
+P+H AAR G V++++ Y I + +I+ TPL+ A N+ V
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDH----------KISHL--GTPLYLACENQQRACV 206
Query: 158 RMLVKKDR-IPLGYLNNAEQTPLSIAIDSSLTDIACFIID 196
+ L++ + G + +PL + ++ ++AC ++D
Sbjct: 207 KKLLESGADVNQG---KGQDSPLHAVVRTASEELACLLMD 243
>pdb|1EF0|A Chain A, Crystal Structure Of Pi-Scei Miniprecursor
pdb|1EF0|B Chain B, Crystal Structure Of Pi-Scei Miniprecursor
Length = 462
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 179 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 232
L + I L+D A F +D R SL R+ E L+ ++ EP + ++N
Sbjct: 216 LGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVN 269
>pdb|1JVA|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
pdb|1JVA|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
Length = 475
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 179 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 232
L + I L+D A F +D R SL R+ E L+ ++ EP + ++N
Sbjct: 223 LGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVN 276
>pdb|1UM2|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
pdb|1UM2|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
Length = 454
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 179 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 232
L + I L+D A F +D R SL R+ E L+ ++ EP + ++N
Sbjct: 212 LGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVN 265
>pdb|1VDE|A Chain A, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1VDE|B Chain B, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1DFA|A Chain A, Crystal Structure Of Pi-Scei In C2 Space Group
Length = 454
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 179 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 232
L + I L+D A F +D R SL R+ E L+ ++ EP + ++N
Sbjct: 212 LGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVN 265
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 58 MSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTIL 116
+ G+T L+ A + ++ + + + L + N G+T LH AA G IV +L
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 31/150 (20%)
Query: 51 MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRRRDSLLRKNN-WKGETPLHIAARVGDP 109
+QN F G T LH+A +F + + S+ ++ W G+ P+H+A
Sbjct: 48 IQNRF------GCTALHLACKFG----CVDTAKYLASVGEVHSLWHGQKPIHLAVXANKT 97
Query: 110 AIVSTILKYAPAITNGTESEPESLLRITDD-------------EGNTPLHNAVRNKHENV 156
+V +++ A PESLL D+ +G T LH V E +
Sbjct: 98 DLVVALVEGAKE----RGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL 153
Query: 157 --VRMLVKKDRIPLGYLNNAEQTPLSIAID 184
+++LV+ P + A++TPL A +
Sbjct: 154 EXIKILVQLGASPTAK-DKADETPLXRAXE 182
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 93 NWKGETPLHIAARVGDPAIVSTILKYAPAIT 123
N +GETPL +A++ G IV +L+ I+
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADIS 161
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 98 TPLHIAARVGDP-AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 155
+P H+ + P IV+T AP NGTE E E IT + GN+ L ++ +N
Sbjct: 25 SPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEME-YEEITLERGNSGLGFSIAGGTDN 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,023,086
Number of Sequences: 62578
Number of extensions: 282616
Number of successful extensions: 953
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 245
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)