BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026425
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NF91|SYNE1_HUMAN Nesprin-1 OS=Homo sapiens GN=SYNE1 PE=1 SV=4
Length = 8797
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 101 LGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEAL-----TVAKKHLTQRIQN 155
L +G + W S Y+ +++ ++ LE++TE L + ++Q++
Sbjct: 5549 LAHGTIAWNSASQLREQYILHQTLLEESKEIDSELEAMTEKLQYLTSVYCTEKMSQQVAE 5608
Query: 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMI 195
L + E+ ++ K +N+++A D+ K E LK LQ+ +
Sbjct: 5609 LGRETEELRQMIKIRLQNLQDAAKDMKKFEAELKKLQAAL 5648
>sp|P15145|AMPN_PIG Aminopeptidase N OS=Sus scrofa GN=ANPEP PE=1 SV=4
Length = 963
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 105 YMWWKG----LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKV 160
YM W+ LS+ LM+ + L K +E + + K+ T+R +NL D+
Sbjct: 689 YMPWQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQY 748
Query: 161 EKQNEISKDIRKNVEEACDDLFKV---------EHNL--KDLQSMIYC 197
+ N IS + + C++L K E+N +L+S IYC
Sbjct: 749 SEINAISTACSNGLPQ-CENLAKTLFDQWMSDPENNPIHPNLRSTIYC 795
>sp|P04522|EXO2_BPT4 Exonuclease subunit 2 OS=Enterobacteria phage T4 GN=46 PE=4 SV=2
Length = 560
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 104 GYMWWKGLS-------FADLMYV-TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155
GY + GLS DL+ V T M L + L S + L V K + Q+I+
Sbjct: 142 GYTPFMGLSTPARRKLVEDLLEVGTLAEMDKLNKALIRELNSQNQVLDVKKDSIIQQIKI 201
Query: 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189
ND VE+Q +++ D ++ DDL K LK
Sbjct: 202 YNDNVERQKKLTGDNLTRLQNMYDDLAKEARTLK 235
>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis
thaliana GN=SMC4 PE=2 SV=1
Length = 1241
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%)
Query: 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205
KH+ Q+I+ L DK+EK + D+ K E++ + + K++ N+ LQ ++ + K++ +
Sbjct: 347 KHVKQKIKKLEDKLEKDSSKIGDMTKESEDSSNLIPKLQENIPKLQKVLLDEEKKLEEI 405
>sp|P34549|YNJ5_CAEEL Uncharacterized protein R10E11.5 OS=Caenorhabditis elegans
GN=R10E11.5 PE=4 SV=3
Length = 444
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV 174
D + ++ ++A V+ ++ L+ E + + + Q ++N+ V NE+ KD+ KN+
Sbjct: 286 DTIDKSKTTVAADVAKMSGALQKAEEEVV---QTIDQTVKNIKSNV---NEVKKDVEKNI 339
Query: 175 EEACDDLFK-VEHNLKDLQSMIYCLDGKIDSLA 206
E DD+ K +E + K L+ + KID+ +
Sbjct: 340 AEKVDDITKELEKSAKSLEETTDKIGSKIDNTS 372
>sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus (strain BGF10) GN=S PE=3
SV=1
Length = 1453
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 79 VRNENSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESV 138
V N++ T+ + TLGALG G + + FA + +A LNK+ + +
Sbjct: 1012 VANDDKMAMYTASLAGGITLGALGGGAV---SIPFAVAVQARLNYVALQTDVLNKNQQIL 1068
Query: 139 TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL-----------FKVEHN 187
A A ++TQ N+ND + + ++ + K + + D + ++++N
Sbjct: 1069 ANAFNQAIGNITQAFGNVNDAIHQTSKGLATVAKALAKVQDVVNTQGQALSHLTVQLQNN 1128
Query: 188 LKDLQSMIYCLDGKIDSL-ADKQ 209
+ + S I + ++D L AD Q
Sbjct: 1129 FQAISSSISDIYNRLDELSADAQ 1151
>sp|B0TZA4|TIG_FRAP2 Trigger factor OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=tig PE=3 SV=1
Length = 438
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 15 LAGLGYTGTILVK---DGKLPELLRELQSLVERLSKSGEQDNFTDAIKDQLNR-LKFECQ 70
LAG T I VK + +LPE+ E V + G D F D IK+ + R LKF Q
Sbjct: 225 LAGKEATFDITVKKIQEAQLPEVDDEF---VAKFGVKGGVDTFEDEIKENMQRELKFILQ 281
Query: 71 RASSGQIF 78
R Q+F
Sbjct: 282 RKVKDQVF 289
>sp|O15078|CE290_HUMAN Centrosomal protein of 290 kDa OS=Homo sapiens GN=CEP290 PE=1 SV=2
Length = 2479
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 157 NDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216
N+K+E QN+ ++RKN+EE+ ++ K+ ++++++ D ID L + D + +
Sbjct: 229 NEKIEVQNQ---EMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQV 285
Query: 217 YLLCNFVDGK 226
L + + K
Sbjct: 286 QELTDLLKSK 295
>sp|O88801|HOME2_RAT Homer protein homolog 2 OS=Rattus norvegicus GN=Homer2 PE=1 SV=1
Length = 354
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN 187
+ L E V+E L A++ QNL DKV + ++ ++EE+ ++ H
Sbjct: 277 IPQLMSECEYVSEKLEAAERD----NQNLEDKV-------RSLKTDIEES---KYRQRHL 322
Query: 188 LKDLQSMIYCLDGKIDSLAD 207
+L+S + LDGKID L D
Sbjct: 323 KGELKSFLEVLDGKIDDLHD 342
>sp|Q9QWW1|HOME2_MOUSE Homer protein homolog 2 OS=Mus musculus GN=Homer2 PE=1 SV=1
Length = 354
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN 187
+ L E V+E L A++ QNL DKV + ++ ++EE+ ++ H
Sbjct: 277 IPQLMSECEYVSEKLEAAERD----NQNLEDKV-------RSLKTDIEES---KYRQRHL 322
Query: 188 LKDLQSMIYCLDGKIDSLAD 207
+L+S + LDGKID L D
Sbjct: 323 KGELKSFLEVLDGKIDDLHD 342
>sp|P34562|YNP9_CAEEL GRIP and coiled-coil domain-containing protein T05G5.9
OS=Caenorhabditis elegans GN=T05G5.9 PE=4 SV=3
Length = 660
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 82 ENSGGNATSLMIPAATLGALGYGYMWWK-GLSFADLMYVTRKSMATAVSNLNKHLESVTE 140
EN+ T + + L L WK + AD++ + + + + V LN+ L TE
Sbjct: 90 ENNPTECTECLSKSGALIELEKEVFEWKEKATRADMISLELRDLESKVDQLNRALRDKTE 149
Query: 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK----DLQSMIY 196
AL A++ +T+ +N+ +++N I K EE L K + K D ++ +
Sbjct: 150 ALIKAQEVITENDLEVNNMKKEKNNTKSSIEKLTEENT-RLTKALQDEKIKSADFEARLR 208
Query: 197 CLDGKIDSLADKQDITNIGM 216
+ +I L+D+Q +G+
Sbjct: 209 SAECRIVELSDQQGNEKLGL 228
>sp|Q6NYG8|DPYD_DANRE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Danio rerio GN=dpyd
PE=2 SV=1
Length = 1022
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183
MAT +S + +ES+ K H N++ K+NE K ++N E +CD
Sbjct: 1 MATMLSKELQDIESILALNPRVKSH-----ANVHSTASKKNE-KKHWKRNPERSCDSCVN 54
Query: 184 VEHNLKDLQ 192
+E+N D++
Sbjct: 55 LENNFDDIK 63
>sp|Q9NSB8|HOME2_HUMAN Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 PE=1 SV=1
Length = 354
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN 187
+ L E V+E L A++ QNL DKV + ++ ++EE+ ++ H
Sbjct: 277 IPQLMSECEYVSEKLEAAERD----NQNLEDKV-------RSLKTDIEES---KYRQRHL 322
Query: 188 LKDLQSMIYCLDGKIDSLAD 207
+L+S + LDGKID L D
Sbjct: 323 KVELKSFLEVLDGKIDDLHD 342
>sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1
Length = 3674
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 108 WKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS 167
++ L+FA + V +S+ ++ + V A H++Q + + + + +
Sbjct: 1962 FRRLNFAQIHTVHEESVMVMTEDMPLEISYVPSAYLTEITHVSQALSEVEQLLNAPDLCA 2021
Query: 168 KDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209
KD +DLFK E +LK+++ + + G++D + +K+
Sbjct: 2022 KDF--------EDLFKQEESLKNIKDSLQQISGRVDIIHNKK 2055
>sp|P51171|SCNNG_XENLA Amiloride-sensitive sodium channel subunit gamma OS=Xenopus laevis
GN=scnn1g-a PE=2 SV=1
Length = 660
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 111 LSFADLMYVTRKSMATAVSNLNKHLES-VTEALTVAKKHLTQRIQNLNDKVEKQNEISKD 169
++F L+Y A + NLN + S V + L +K +Q ++N+ E +D
Sbjct: 88 VTFQKLVYP-----AVTICNLNPYSYSKVKDRLAALEKETSQTLKNIYGFTEPLIRSKRD 142
Query: 170 IRKNVEEACDDLFKVEHNLKDLQSM 194
+ NVE + +D+F + L L+S+
Sbjct: 143 VGVNVENSTEDIFLKQIPLYRLESV 167
>sp|Q12HM8|YIDC_SHEDO Membrane protein insertase YidC OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=yidC PE=3 SV=1
Length = 541
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 103 YGYMWWKGLSFADLMYVTRK---SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159
YG++WW + L+ + + + A+ + + + LT A+ +++NL K
Sbjct: 329 YGFLWWLAIPIYKLLMIFQSLVTNWGIAIILITLTVRGLLYPLTKAQYTSMAKMRNLQPK 388
Query: 160 VEKQNEISKDIRKNVEEACDDLFKVE 185
+ E D R+ + +A +L+K E
Sbjct: 389 LADMKERFGDDRQKMGQAMMELYKKE 414
>sp|Q0BM93|TIG_FRATO Trigger factor OS=Francisella tularensis subsp. holarctica (strain
OSU18) GN=tig PE=3 SV=1
Length = 438
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 15 LAGLGYTGTILVKDGKLPELLRELQSLVERLSKSGEQDNFTDAIKDQLNR-LKFECQRAS 73
LAG T I VK + EL V++ G D F + IK+ + R LKF QR
Sbjct: 225 LAGAETTFDITVKKIQQAELPEVNDEFVKKFGVKGGVDTFENEIKENMQRELKFILQRKV 284
Query: 74 SGQIF 78
Q+F
Sbjct: 285 KDQVF 289
>sp|Q2A3U2|TIG_FRATH Trigger factor OS=Francisella tularensis subsp. holarctica (strain
LVS) GN=tig PE=3 SV=1
Length = 438
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 15 LAGLGYTGTILVKDGKLPELLRELQSLVERLSKSGEQDNFTDAIKDQLNR-LKFECQRAS 73
LAG T I VK + EL V++ G D F + IK+ + R LKF QR
Sbjct: 225 LAGAETTFDITVKKIQQAELPEVNDEFVKKFGVKGGVDTFENEIKENMQRELKFILQRKV 284
Query: 74 SGQIF 78
Q+F
Sbjct: 285 KDQVF 289
>sp|A7NBR5|TIG_FRATF Trigger factor OS=Francisella tularensis subsp. holarctica (strain
FTNF002-00 / FTA) GN=tig PE=3 SV=1
Length = 438
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 15 LAGLGYTGTILVKDGKLPELLRELQSLVERLSKSGEQDNFTDAIKDQLNR-LKFECQRAS 73
LAG T I VK + EL V++ G D F + IK+ + R LKF QR
Sbjct: 225 LAGAETTFDITVKKIQQAELPEVNDEFVKKFGVKGGVDTFENEIKENMQRELKFILQRKV 284
Query: 74 SGQIF 78
Q+F
Sbjct: 285 KDQVF 289
>sp|A0Q6T0|TIG_FRATN Trigger factor OS=Francisella tularensis subsp. novicida (strain
U112) GN=tig PE=3 SV=1
Length = 438
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 15 LAGLGYTGTILVK---DGKLPELLRELQSLVERLSKSGEQDNFTDAIKDQLNR-LKFECQ 70
LAG T I VK +LPE+ E V++ G D F + IK+ + R LKF Q
Sbjct: 225 LAGAETTFDITVKKIQQAELPEVNDEF---VKKFGVKGGVDTFENEIKENMQRELKFILQ 281
Query: 71 RASSGQIF 78
R Q+F
Sbjct: 282 RKVKDQVF 289
>sp|B0TQH1|YIDC_SHEHH Membrane protein insertase YidC OS=Shewanella halifaxensis (strain
HAW-EB4) GN=yidC PE=3 SV=1
Length = 544
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 88 ATSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMAT---AVSNLNKHLESVTEALTV 144
A S++ P+ L + YG++WW + L+ + A+ + + + LT
Sbjct: 318 ALSVLSPSLNL-VVDYGFLWWLAVPIYKLLMFFHSIVGNWGFAIILITLTVRGLLYPLTK 376
Query: 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185
A+ +++NL K+ + E D R+ + +A +L+K E
Sbjct: 377 AQYTSMAKMRNLQPKLAELKERFGDDRQKMGQAMMELYKKE 417
>sp|Q9FHN8|KCBP_ARATH Kinesin-like calmodulin-binding protein OS=Arabidopsis thaliana
GN=KCBP PE=1 SV=1
Length = 1260
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211
RI+ LN+K + E K + V+E F VEH KD + + D D A + DI
Sbjct: 894 RIRPLNEKESSERE--KQMLTTVDE-----FTVEHPWKDDKRKQHIYDRVFDMRASQDDI 946
Query: 212 TNIGMYLLCNFVDG 225
YL+ + VDG
Sbjct: 947 FEDTKYLVQSAVDG 960
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,200,367
Number of Sequences: 539616
Number of extensions: 3040182
Number of successful extensions: 15418
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 15127
Number of HSP's gapped (non-prelim): 473
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)