Query 026425
Match_columns 238
No_of_seqs 67 out of 69
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 07:51:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07889 DUF1664: Protein of u 100.0 2E-62 4.3E-67 401.1 14.5 126 83-209 1-126 (126)
2 PF10805 DUF2730: Protein of u 96.9 0.0028 6.1E-08 50.5 6.2 85 97-205 14-98 (106)
3 PF04375 HemX: HemX; InterPro 95.9 0.087 1.9E-06 50.0 10.7 44 174-217 95-144 (372)
4 PRK10884 SH3 domain-containing 95.8 0.35 7.6E-06 43.0 13.6 98 102-207 66-167 (206)
5 TIGR00293 prefoldin, archaeal 95.7 0.23 5.1E-06 39.5 10.9 54 98-182 71-124 (126)
6 PRK03947 prefoldin subunit alp 95.4 0.55 1.2E-05 38.2 12.4 55 98-183 79-133 (140)
7 PRK11637 AmiB activator; Provi 95.4 0.22 4.8E-06 47.6 11.6 80 124-203 45-127 (428)
8 PF01519 DUF16: Protein of unk 95.3 0.14 3E-06 41.5 8.5 81 118-207 22-102 (102)
9 cd00584 Prefoldin_alpha Prefol 94.5 1 2.2E-05 36.1 11.6 99 54-183 14-126 (129)
10 PHA02562 46 endonuclease subun 94.2 0.83 1.8E-05 44.2 12.4 90 129-218 191-280 (562)
11 PRK14011 prefoldin subunit alp 94.1 0.75 1.6E-05 38.9 10.3 41 141-181 85-125 (144)
12 PF14712 Snapin_Pallidin: Snap 94.0 1.3 2.8E-05 33.5 10.7 72 134-206 15-91 (92)
13 PF00038 Filament: Intermediat 93.8 3 6.4E-05 37.7 14.3 89 124-212 167-256 (312)
14 PF12718 Tropomyosin_1: Tropom 93.5 1.7 3.8E-05 36.3 11.5 63 148-210 77-139 (143)
15 PF11932 DUF3450: Protein of u 93.4 1.9 4.1E-05 38.5 12.3 91 134-224 25-119 (251)
16 PF02996 Prefoldin: Prefoldin 93.4 0.61 1.3E-05 36.4 8.1 77 76-183 39-116 (120)
17 KOG2629 Peroxisomal membrane a 93.4 0.33 7.1E-06 45.7 7.6 98 87-185 82-188 (300)
18 TIGR01000 bacteriocin_acc bact 93.2 6 0.00013 38.1 16.2 49 18-72 67-124 (457)
19 PRK11637 AmiB activator; Provi 93.2 1.6 3.5E-05 41.8 12.2 78 129-206 43-123 (428)
20 PF04582 Reo_sigmaC: Reovirus 93.2 0.12 2.6E-06 49.1 4.5 86 123-208 67-155 (326)
21 PF07889 DUF1664: Protein of u 93.2 1.6 3.5E-05 36.3 10.7 31 170-200 94-124 (126)
22 PF13747 DUF4164: Domain of un 93.2 1.3 2.8E-05 34.6 9.5 82 138-223 2-83 (89)
23 PF10158 LOH1CR12: Tumour supp 92.6 3.7 7.9E-05 34.3 12.0 78 122-199 27-114 (131)
24 PF06103 DUF948: Bacterial pro 92.0 1.9 4E-05 32.7 8.9 29 117-145 17-45 (90)
25 COG4942 Membrane-bound metallo 91.6 3.3 7.3E-05 40.8 12.3 95 133-232 38-132 (420)
26 PRK10920 putative uroporphyrin 91.5 1 2.2E-05 43.8 8.6 54 99-160 48-101 (390)
27 PF10498 IFT57: Intra-flagella 91.0 4.3 9.3E-05 39.0 12.2 69 115-183 223-291 (359)
28 PF10805 DUF2730: Protein of u 90.9 2.8 6E-05 33.4 9.2 65 150-221 34-100 (106)
29 PF00015 MCPsignal: Methyl-acc 90.7 8.6 0.00019 31.9 13.9 21 54-74 41-62 (213)
30 PF04513 Baculo_PEP_C: Baculov 89.7 7.7 0.00017 33.0 11.3 83 123-205 35-118 (140)
31 COG3883 Uncharacterized protei 89.7 4 8.8E-05 38.0 10.4 68 136-203 37-104 (265)
32 PF01442 Apolipoprotein: Apoli 89.5 8.8 0.00019 30.9 11.2 15 125-139 4-18 (202)
33 PHA02562 46 endonuclease subun 89.1 9.2 0.0002 37.1 12.9 50 157-206 336-385 (562)
34 PF05816 TelA: Toxic anion res 88.6 10 0.00022 35.5 12.4 99 120-218 85-201 (333)
35 PF11932 DUF3450: Protein of u 88.0 12 0.00027 33.3 12.1 71 130-200 35-105 (251)
36 PF05597 Phasin: Poly(hydroxya 87.7 4.4 9.5E-05 33.9 8.5 24 185-208 108-131 (132)
37 PRK10884 SH3 domain-containing 87.7 8.5 0.00018 34.3 10.8 115 71-192 50-166 (206)
38 PF00015 MCPsignal: Methyl-acc 87.6 15 0.00032 30.4 13.2 20 181-200 137-156 (213)
39 TIGR02132 phaR_Bmeg polyhydrox 87.4 2.5 5.5E-05 37.5 7.2 14 149-162 84-97 (189)
40 PF05478 Prominin: Prominin; 87.4 9.8 0.00021 39.8 12.6 35 126-160 187-222 (806)
41 PRK04406 hypothetical protein; 87.2 4.7 0.0001 30.6 7.7 54 144-197 4-57 (75)
42 PF06103 DUF948: Bacterial pro 87.2 9 0.0002 28.9 9.3 56 150-205 32-87 (90)
43 PF10241 KxDL: Uncharacterized 87.2 8.3 0.00018 29.7 9.2 63 142-204 16-82 (88)
44 PF06419 COG6: Conserved oligo 87.0 7.5 0.00016 39.5 11.3 90 113-212 6-99 (618)
45 smart00283 MA Methyl-accepting 86.7 18 0.00039 30.4 15.4 20 55-74 93-113 (262)
46 PRK09039 hypothetical protein; 86.7 12 0.00026 35.4 11.8 59 142-200 107-165 (343)
47 PF00261 Tropomyosin: Tropomyo 86.4 14 0.00031 32.8 11.6 69 150-218 91-159 (237)
48 PF05531 NPV_P10: Nucleopolyhe 86.3 3.5 7.7E-05 31.7 6.6 22 184-205 40-61 (75)
49 PF07798 DUF1640: Protein of u 86.2 20 0.00044 30.6 14.3 31 118-148 43-73 (177)
50 PRK06975 bifunctional uroporph 86.2 4 8.7E-05 41.8 8.9 19 145-163 379-397 (656)
51 PRK04778 septation ring format 86.0 9.8 0.00021 38.1 11.4 79 102-180 238-339 (569)
52 PF05739 SNARE: SNARE domain; 85.8 8.5 0.00019 26.7 8.0 54 151-204 4-57 (63)
53 KOG0972 Huntingtin interacting 85.8 12 0.00026 36.0 11.1 98 109-206 223-325 (384)
54 PRK04778 septation ring format 85.5 24 0.00053 35.3 13.9 38 31-69 228-265 (569)
55 PF12325 TMF_TATA_bd: TATA ele 85.5 8.3 0.00018 31.8 8.8 65 119-184 44-108 (120)
56 PF05791 Bacillus_HBL: Bacillu 85.3 18 0.00038 31.3 11.3 89 120-208 78-171 (184)
57 PF09403 FadA: Adhesion protei 85.2 21 0.00045 29.8 11.9 94 97-204 11-111 (126)
58 PF10498 IFT57: Intra-flagella 85.1 10 0.00022 36.4 10.6 87 112-202 231-324 (359)
59 smart00502 BBC B-Box C-termina 84.8 15 0.00032 27.8 10.4 11 214-224 89-99 (127)
60 KOG0250 DNA repair protein RAD 84.8 16 0.00035 40.0 12.8 92 134-225 292-383 (1074)
61 PF06008 Laminin_I: Laminin Do 84.8 13 0.00028 33.3 10.6 87 123-213 21-107 (264)
62 PRK13182 racA polar chromosome 84.5 5.5 0.00012 34.7 7.8 62 144-207 85-146 (175)
63 cd00890 Prefoldin Prefoldin is 83.9 4 8.6E-05 32.0 6.2 42 142-183 85-126 (129)
64 PF08614 ATG16: Autophagy prot 83.6 5.8 0.00013 34.2 7.6 96 112-207 71-172 (194)
65 PF09602 PhaP_Bmeg: Polyhydrox 82.9 20 0.00044 31.4 10.5 85 122-207 19-106 (165)
66 TIGR01837 PHA_granule_1 poly(h 82.9 8.3 0.00018 31.3 7.8 44 164-207 73-117 (118)
67 PF12732 YtxH: YtxH-like prote 82.8 5 0.00011 29.5 6.0 47 91-144 5-51 (74)
68 KOG1161 Protein involved in va 82.8 4.9 0.00011 38.2 7.3 70 123-193 45-114 (310)
69 PF04102 SlyX: SlyX; InterPro 82.4 6.3 0.00014 29.1 6.4 51 149-206 2-52 (69)
70 PF08317 Spc7: Spc7 kinetochor 82.4 43 0.00092 31.3 13.5 94 114-207 151-251 (325)
71 PF04380 BMFP: Membrane fusoge 82.4 6.2 0.00013 30.0 6.4 75 120-207 4-78 (79)
72 COG1579 Zn-ribbon protein, pos 81.9 9.2 0.0002 35.1 8.5 57 152-208 11-67 (239)
73 PRK15048 methyl-accepting chem 81.9 46 0.001 32.4 13.8 53 139-191 272-324 (553)
74 PF12718 Tropomyosin_1: Tropom 81.7 30 0.00065 29.0 11.8 90 126-219 17-106 (143)
75 COG1196 Smc Chromosome segrega 80.9 31 0.00067 37.6 13.3 31 177-207 868-898 (1163)
76 PF06295 DUF1043: Protein of u 80.9 14 0.00031 30.3 8.5 43 137-179 29-71 (128)
77 smart00787 Spc7 Spc7 kinetocho 80.3 43 0.00093 31.6 12.6 100 119-218 151-257 (312)
78 COG1196 Smc Chromosome segrega 80.1 38 0.00083 36.9 13.7 68 154-222 442-509 (1163)
79 PF09177 Syntaxin-6_N: Syntaxi 80.1 9.9 0.00022 29.3 7.0 57 142-205 37-96 (97)
80 PF03915 AIP3: Actin interacti 80.1 15 0.00032 36.3 9.7 81 139-219 201-301 (424)
81 COG4942 Membrane-bound metallo 79.9 35 0.00076 33.9 12.2 89 120-208 158-253 (420)
82 TIGR02168 SMC_prok_B chromosom 79.8 48 0.001 34.4 13.8 12 194-205 916-927 (1179)
83 PF10168 Nup88: Nuclear pore c 79.7 23 0.0005 37.0 11.5 36 186-221 586-621 (717)
84 PF10186 Atg14: UV radiation r 79.5 43 0.00093 29.4 13.3 47 143-189 62-108 (302)
85 PF05531 NPV_P10: Nucleopolyhe 79.4 11 0.00025 29.0 7.0 21 187-207 36-56 (75)
86 PRK00295 hypothetical protein; 79.3 11 0.00024 27.9 6.8 49 149-197 3-51 (68)
87 TIGR03513 GldL_gliding gliding 79.1 49 0.0011 29.8 12.2 90 114-205 102-191 (202)
88 PRK02119 hypothetical protein; 79.1 14 0.0003 27.8 7.3 49 148-196 6-54 (73)
89 PF04375 HemX: HemX; InterPro 79.1 11 0.00023 36.0 8.3 23 184-206 145-167 (372)
90 PF04513 Baculo_PEP_C: Baculov 79.0 40 0.00086 28.8 11.2 79 124-205 18-104 (140)
91 PF08317 Spc7: Spc7 kinetochor 79.0 36 0.00078 31.7 11.6 38 172-209 209-246 (325)
92 smart00806 AIP3 Actin interact 78.9 21 0.00046 35.4 10.4 95 123-217 177-303 (426)
93 TIGR00996 Mtu_fam_mce virulenc 78.6 36 0.00077 30.5 11.1 9 188-196 215-223 (291)
94 PF14257 DUF4349: Domain of un 78.3 8.6 0.00019 34.3 7.0 53 151-203 139-193 (262)
95 PF10046 BLOC1_2: Biogenesis o 78.2 30 0.00066 27.0 12.0 68 141-208 25-95 (99)
96 PF15450 DUF4631: Domain of un 78.1 29 0.00063 35.3 11.2 94 112-205 333-449 (531)
97 PF07888 CALCOCO1: Calcium bin 78.0 22 0.00047 36.4 10.4 58 114-171 129-191 (546)
98 PF04129 Vps52: Vps52 / Sac2 f 77.9 26 0.00056 34.8 10.8 54 150-203 13-66 (508)
99 PRK02793 phi X174 lysis protei 77.8 14 0.0003 27.7 7.0 44 148-191 5-48 (72)
100 PF04799 Fzo_mitofusin: fzo-li 77.6 20 0.00044 31.5 8.9 64 137-207 102-165 (171)
101 PF02403 Seryl_tRNA_N: Seryl-t 77.5 16 0.00035 28.3 7.5 26 143-171 35-60 (108)
102 PRK04325 hypothetical protein; 77.4 16 0.00035 27.5 7.3 44 148-191 6-49 (74)
103 PRK00846 hypothetical protein; 77.4 20 0.00043 27.7 7.8 54 146-206 8-61 (77)
104 KOG0250 DNA repair protein RAD 76.9 29 0.00063 38.1 11.5 62 148-209 362-424 (1074)
105 PF05008 V-SNARE: Vesicle tran 76.8 16 0.00035 26.7 7.0 50 125-177 2-51 (79)
106 PF10168 Nup88: Nuclear pore c 76.7 46 0.00099 34.9 12.6 79 124-205 541-619 (717)
107 PF06160 EzrA: Septation ring 76.1 21 0.00046 35.9 9.7 62 136-197 371-432 (560)
108 COG2900 SlyX Uncharacterized p 76.1 18 0.00039 27.8 7.1 53 146-198 3-55 (72)
109 PF05377 FlaC_arch: Flagella a 76.0 7.7 0.00017 28.3 4.9 36 153-188 2-37 (55)
110 KOG0161 Myosin class II heavy 75.4 29 0.00062 40.4 11.4 79 128-206 1363-1441(1930)
111 PRK00736 hypothetical protein; 75.3 19 0.00041 26.7 7.0 43 149-191 3-45 (68)
112 PF04582 Reo_sigmaC: Reovirus 75.3 5.4 0.00012 38.2 5.1 74 127-204 85-158 (326)
113 PF03962 Mnd1: Mnd1 family; I 75.3 56 0.0012 28.5 11.3 38 111-151 57-94 (188)
114 PF03233 Cauli_AT: Aphid trans 75.0 9.7 0.00021 33.3 6.2 49 143-191 110-161 (163)
115 PF14197 Cep57_CLD_2: Centroso 74.0 34 0.00075 25.5 8.7 65 141-205 2-66 (69)
116 PF04799 Fzo_mitofusin: fzo-li 73.9 19 0.00041 31.7 7.7 57 130-186 102-165 (171)
117 TIGR03185 DNA_S_dndD DNA sulfu 73.8 45 0.00097 33.8 11.5 31 174-204 437-467 (650)
118 cd00632 Prefoldin_beta Prefold 73.7 14 0.0003 28.9 6.3 14 56-69 16-29 (105)
119 PF10883 DUF2681: Protein of u 73.6 3.6 7.9E-05 32.4 3.0 16 96-111 11-26 (87)
120 PRK03918 chromosome segregatio 73.2 64 0.0014 33.2 12.6 13 151-163 640-652 (880)
121 COG1842 PspA Phage shock prote 73.1 46 0.001 30.1 10.3 96 112-212 85-185 (225)
122 TIGR03495 phage_LysB phage lys 73.0 14 0.00031 31.2 6.5 14 97-110 8-21 (135)
123 COG5283 Phage-related tail pro 73.0 47 0.001 37.0 11.9 109 124-232 27-145 (1213)
124 PF00261 Tropomyosin: Tropomyo 72.9 69 0.0015 28.5 12.2 79 122-200 144-225 (237)
125 PF08702 Fib_alpha: Fibrinogen 72.4 58 0.0013 27.4 12.9 97 112-208 22-126 (146)
126 PF00509 Hemagglutinin: Haemag 72.3 6 0.00013 40.3 4.8 78 119-196 364-451 (550)
127 PHA01750 hypothetical protein 72.1 14 0.0003 28.3 5.7 32 115-146 23-55 (75)
128 COG3883 Uncharacterized protei 72.1 28 0.00062 32.5 8.9 11 153-163 33-43 (265)
129 PF02994 Transposase_22: L1 tr 71.9 11 0.00024 36.0 6.4 22 182-203 168-189 (370)
130 PF04100 Vps53_N: Vps53-like, 71.7 23 0.00049 34.1 8.4 15 135-149 23-37 (383)
131 PF10779 XhlA: Haemolysin XhlA 71.5 22 0.00048 26.1 6.6 15 148-162 3-17 (71)
132 PRK02224 chromosome segregatio 71.5 1.2E+02 0.0027 31.4 14.2 29 134-162 163-198 (880)
133 PF04912 Dynamitin: Dynamitin 71.3 62 0.0013 30.8 11.2 56 147-205 332-387 (388)
134 PRK11166 chemotaxis regulator 71.3 63 0.0014 29.3 10.6 85 122-206 26-122 (214)
135 PF12128 DUF3584: Protein of u 71.1 55 0.0012 35.9 12.0 91 128-221 258-349 (1201)
136 PRK10803 tol-pal system protei 71.1 15 0.00033 33.4 6.8 35 169-203 65-99 (263)
137 smart00787 Spc7 Spc7 kinetocho 71.0 44 0.00096 31.5 10.0 71 138-208 166-240 (312)
138 PF07439 DUF1515: Protein of u 70.9 34 0.00074 28.3 8.0 54 129-182 4-64 (112)
139 PF10073 DUF2312: Uncharacteri 70.7 18 0.00038 27.9 6.0 45 146-197 6-50 (74)
140 PRK11091 aerobic respiration c 70.7 1.2E+02 0.0027 30.6 14.0 35 129-163 88-122 (779)
141 PRK04863 mukB cell division pr 70.7 1E+02 0.0022 35.2 14.1 26 126-151 314-339 (1486)
142 TIGR00606 rad50 rad50. This fa 70.7 95 0.0021 34.4 13.8 77 118-194 880-956 (1311)
143 PRK03918 chromosome segregatio 70.6 41 0.00088 34.7 10.5 64 134-197 159-225 (880)
144 COG3750 Uncharacterized protei 70.3 30 0.00064 27.3 7.2 45 145-196 15-59 (85)
145 TIGR03185 DNA_S_dndD DNA sulfu 70.2 75 0.0016 32.3 12.2 38 169-206 425-462 (650)
146 PF10828 DUF2570: Protein of u 70.1 21 0.00047 28.3 6.7 15 97-111 11-25 (110)
147 PRK10698 phage shock protein P 69.8 65 0.0014 28.8 10.4 85 128-212 97-185 (222)
148 PRK02224 chromosome segregatio 69.8 77 0.0017 32.8 12.3 11 32-42 37-47 (880)
149 PF02646 RmuC: RmuC family; I 69.7 37 0.00081 31.4 9.2 45 123-167 3-47 (304)
150 PLN03094 Substrate binding sub 69.7 27 0.00057 33.9 8.4 20 133-152 293-312 (370)
151 cd07912 Tweety_N N-terminal do 69.7 32 0.0007 33.8 9.1 83 97-184 93-184 (418)
152 PF04111 APG6: Autophagy prote 69.4 56 0.0012 30.7 10.3 67 140-206 67-133 (314)
153 PRK04098 sec-independent trans 69.4 22 0.00047 30.9 7.0 26 126-151 27-52 (158)
154 PF09304 Cortex-I_coil: Cortex 69.3 46 0.001 27.3 8.5 77 120-203 10-89 (107)
155 PF03908 Sec20: Sec20; InterP 69.2 49 0.0011 25.3 10.7 71 136-218 4-74 (92)
156 PF07851 TMPIT: TMPIT-like pro 69.2 52 0.0011 31.6 10.1 50 135-184 9-58 (330)
157 PRK13694 hypothetical protein; 69.0 29 0.00063 27.3 7.0 47 144-197 12-58 (83)
158 PF08700 Vps51: Vps51/Vps67; 68.9 43 0.00094 24.6 8.3 62 142-206 24-85 (87)
159 PRK00888 ftsB cell division pr 68.7 19 0.00042 28.7 6.2 31 148-178 31-61 (105)
160 PF00804 Syntaxin: Syntaxin; 68.5 44 0.00095 24.5 10.1 64 124-187 5-71 (103)
161 PF05791 Bacillus_HBL: Bacillu 68.1 79 0.0017 27.3 10.5 77 127-203 104-180 (184)
162 PF10046 BLOC1_2: Biogenesis o 68.0 56 0.0012 25.5 10.9 19 186-204 80-98 (99)
163 PF15450 DUF4631: Domain of un 67.9 74 0.0016 32.6 11.3 90 122-211 336-437 (531)
164 COG3165 Uncharacterized protei 67.6 23 0.00049 32.0 7.0 67 136-208 133-201 (204)
165 PF01442 Apolipoprotein: Apoli 67.5 63 0.0014 25.9 11.9 12 149-160 87-98 (202)
166 PF06120 Phage_HK97_TLTM: Tail 67.3 91 0.002 29.6 11.2 110 92-214 24-152 (301)
167 PF15188 CCDC-167: Coiled-coil 67.2 27 0.00059 27.4 6.6 28 130-161 2-29 (85)
168 KOG4117 Heat shock factor bind 67.2 41 0.00089 25.7 7.2 44 121-164 11-54 (73)
169 PF09730 BicD: Microtubule-ass 67.0 1.3E+02 0.0028 31.9 13.3 102 125-233 372-473 (717)
170 PF05266 DUF724: Protein of un 66.5 92 0.002 27.4 11.2 62 144-205 124-185 (190)
171 cd07628 BAR_Atg24p The Bin/Amp 66.4 58 0.0013 28.0 9.1 75 148-222 8-83 (185)
172 PF10267 Tmemb_cc2: Predicted 66.2 94 0.002 30.6 11.4 52 152-206 259-318 (395)
173 PF05478 Prominin: Prominin; 65.9 94 0.002 32.7 12.1 13 211-223 751-763 (806)
174 COG2959 HemX Uncharacterized e 65.4 60 0.0013 32.0 9.8 61 91-162 39-101 (391)
175 PF07295 DUF1451: Protein of u 65.4 45 0.00098 28.3 8.1 84 136-219 3-104 (146)
176 PF06156 DUF972: Protein of un 65.2 42 0.00092 27.1 7.5 31 121-151 3-33 (107)
177 PF00038 Filament: Intermediat 64.6 1.1E+02 0.0024 27.6 11.0 62 146-207 70-131 (312)
178 PF10018 Med4: Vitamin-D-recep 64.6 59 0.0013 28.0 8.8 51 135-185 11-63 (188)
179 KOG4674 Uncharacterized conser 64.6 72 0.0016 37.1 11.5 31 176-206 855-885 (1822)
180 PF05701 WEMBL: Weak chloropla 64.4 62 0.0014 32.3 10.1 42 164-205 308-349 (522)
181 COG5185 HEC1 Protein involved 64.0 1.1E+02 0.0024 31.5 11.5 61 107-167 361-423 (622)
182 PF07106 TBPIP: Tat binding pr 63.7 41 0.00089 28.2 7.5 27 55-81 23-52 (169)
183 PF02646 RmuC: RmuC family; I 63.6 47 0.001 30.8 8.6 63 133-196 2-65 (304)
184 KOG2991 Splicing regulator [RN 63.6 46 0.001 31.6 8.4 85 150-234 235-319 (330)
185 TIGR00414 serS seryl-tRNA synt 63.5 73 0.0016 31.0 10.2 73 141-217 34-107 (418)
186 PF10267 Tmemb_cc2: Predicted 63.3 99 0.0022 30.4 11.0 77 124-203 217-293 (395)
187 PF12732 YtxH: YtxH-like prote 63.3 35 0.00076 25.0 6.3 17 145-161 27-43 (74)
188 PF05384 DegS: Sensor protein 63.2 37 0.00081 29.3 7.3 47 153-199 8-54 (159)
189 PF04740 LXG: LXG domain of WX 63.1 93 0.002 26.3 11.7 20 55-74 19-39 (204)
190 KOG4593 Mitotic checkpoint pro 63.1 1.9E+02 0.0041 30.7 13.4 96 122-217 115-210 (716)
191 TIGR01843 type_I_hlyD type I s 63.1 1.3E+02 0.0027 27.8 13.5 16 54-69 82-97 (423)
192 PF10241 KxDL: Uncharacterized 63.0 68 0.0015 24.7 9.0 54 131-184 23-76 (88)
193 PF10234 Cluap1: Clusterin-ass 62.7 69 0.0015 29.9 9.4 80 125-205 123-202 (267)
194 PRK10698 phage shock protein P 62.6 1.1E+02 0.0025 27.2 11.9 41 170-210 97-137 (222)
195 PLN02678 seryl-tRNA synthetase 62.4 39 0.00085 33.5 8.2 65 142-210 38-102 (448)
196 PF04906 Tweety: Tweety; Inte 62.3 80 0.0017 30.6 10.2 86 98-185 74-162 (406)
197 KOG2391 Vacuolar sorting prote 62.2 1.4E+02 0.003 29.2 11.6 68 115-183 218-285 (365)
198 PF03148 Tektin: Tektin family 61.8 1.5E+02 0.0033 28.4 12.5 15 116-130 202-216 (384)
199 TIGR00634 recN DNA repair prot 61.8 65 0.0014 32.1 9.7 32 126-157 266-297 (563)
200 PF03915 AIP3: Actin interacti 61.5 1.8E+02 0.0038 28.9 12.6 36 117-152 204-239 (424)
201 PF05667 DUF812: Protein of un 61.2 91 0.002 32.1 10.7 87 122-208 397-483 (594)
202 PF07957 DUF3294: Protein of u 61.2 17 0.00037 33.1 5.0 34 145-178 5-38 (216)
203 PF05701 WEMBL: Weak chloropla 61.1 1.3E+02 0.0028 30.1 11.7 43 166-208 282-324 (522)
204 cd07667 BAR_SNX30 The Bin/Amph 61.1 93 0.002 28.6 9.8 76 148-223 55-130 (240)
205 KOG0996 Structural maintenance 60.8 58 0.0013 36.4 9.7 82 135-216 396-477 (1293)
206 KOG0995 Centromere-associated 60.8 1.9E+02 0.004 30.1 12.7 102 113-218 215-336 (581)
207 COG4026 Uncharacterized protei 60.6 52 0.0011 30.7 8.1 8 121-128 109-116 (290)
208 COG1283 NptA Na+/phosphate sym 60.6 1.1E+02 0.0024 31.3 11.1 97 120-223 336-448 (533)
209 PF05667 DUF812: Protein of un 60.5 80 0.0017 32.5 10.2 29 178-206 504-532 (594)
210 PRK05431 seryl-tRNA synthetase 60.5 57 0.0012 31.8 8.9 67 142-212 33-99 (425)
211 KOG3385 V-SNARE [Intracellular 60.5 31 0.00067 28.8 6.0 66 150-220 35-100 (118)
212 PF03670 UPF0184: Uncharacteri 60.3 43 0.00094 26.3 6.5 47 128-178 28-74 (83)
213 PF10602 RPN7: 26S proteasome 60.3 37 0.0008 28.9 6.8 58 141-200 4-61 (177)
214 TIGR00833 actII Transport prot 60.2 1.2E+02 0.0026 32.3 11.7 38 185-222 606-643 (910)
215 PF06009 Laminin_II: Laminin D 60.1 2.9 6.3E-05 34.4 0.0 41 171-211 44-84 (138)
216 PF11945 WASH_WAHD: WAHD domai 59.9 53 0.0011 31.0 8.2 54 126-179 18-71 (297)
217 TIGR02338 gimC_beta prefoldin, 59.9 31 0.00068 27.2 5.8 21 117-138 59-79 (110)
218 PF08172 CASP_C: CASP C termin 59.8 42 0.00091 30.7 7.4 57 136-192 78-134 (248)
219 COG3352 FlaC Putative archaeal 59.6 75 0.0016 27.7 8.4 71 120-191 70-141 (157)
220 TIGR02231 conserved hypothetic 59.5 1.3E+02 0.0028 29.7 11.2 21 124-144 69-89 (525)
221 PF06156 DUF972: Protein of un 59.4 24 0.00052 28.5 5.2 55 146-200 3-57 (107)
222 PHA03395 p10 fibrous body prot 59.3 36 0.00078 27.0 5.9 10 153-162 13-22 (87)
223 COG2433 Uncharacterized conser 59.3 79 0.0017 33.1 9.8 48 134-181 419-466 (652)
224 PF03114 BAR: BAR domain; Int 59.1 86 0.0019 25.7 8.6 20 54-73 27-47 (229)
225 PF06320 GCN5L1: GCN5-like pro 59.0 99 0.0022 25.3 10.7 52 160-211 42-93 (121)
226 PRK13729 conjugal transfer pil 58.7 29 0.00063 34.9 6.6 50 160-209 71-120 (475)
227 PF06320 GCN5L1: GCN5-like pro 58.7 1E+02 0.0022 25.3 10.7 56 141-197 51-110 (121)
228 smart00502 BBC B-Box C-termina 58.7 76 0.0017 23.9 11.7 38 124-161 19-56 (127)
229 TIGR00606 rad50 rad50. This fa 58.6 2E+02 0.0043 32.0 13.4 22 150-171 940-961 (1311)
230 PF07888 CALCOCO1: Calcium bin 58.6 2.1E+02 0.0046 29.5 12.7 71 145-215 256-326 (546)
231 PRK12704 phosphodiesterase; Pr 58.3 1.3E+02 0.0027 30.4 11.0 24 188-211 119-142 (520)
232 PF02994 Transposase_22: L1 tr 58.3 18 0.00039 34.6 5.0 37 173-209 152-188 (370)
233 PF10280 Med11: Mediator compl 58.2 97 0.0021 24.9 8.7 65 151-225 6-77 (117)
234 PHA00276 phage lambda Rz-like 58.1 61 0.0013 27.9 7.6 35 156-190 47-81 (144)
235 PF01920 Prefoldin_2: Prefoldi 58.1 44 0.00095 25.1 6.2 37 144-180 62-98 (106)
236 cd00193 t_SNARE Soluble NSF (N 58.1 53 0.0011 21.8 7.5 45 151-195 6-50 (60)
237 COG1256 FlgK Flagellar hook-as 57.9 85 0.0019 32.0 9.9 82 119-204 131-212 (552)
238 COG1463 Ttg2C ABC-type transpo 57.9 1.4E+02 0.003 28.2 10.7 88 129-216 214-301 (359)
239 PF06008 Laminin_I: Laminin Do 57.8 1.4E+02 0.0031 26.7 10.8 72 135-213 169-240 (264)
240 PF04100 Vps53_N: Vps53-like, 57.3 1.9E+02 0.004 27.9 12.0 58 126-183 25-96 (383)
241 PF01544 CorA: CorA-like Mg2+ 57.1 1.3E+02 0.0027 26.1 9.7 44 116-159 115-159 (292)
242 PRK10803 tol-pal system protei 56.9 54 0.0012 29.9 7.6 57 134-190 44-100 (263)
243 cd07621 BAR_SNX5_6 The Bin/Amp 56.9 93 0.002 28.1 9.0 77 115-194 48-125 (219)
244 TIGR02550 flagell_flgL flagell 56.8 1.5E+02 0.0032 26.6 13.7 21 53-73 104-125 (306)
245 COG1340 Uncharacterized archae 56.8 1.4E+02 0.0031 28.4 10.4 69 135-203 53-124 (294)
246 PF15361 RIC3: Resistance to i 56.6 4.5 9.7E-05 34.4 0.6 28 82-109 75-103 (152)
247 TIGR00634 recN DNA repair prot 56.4 1.2E+02 0.0025 30.4 10.4 44 122-165 269-315 (563)
248 COG1730 GIM5 Predicted prefold 56.4 32 0.00068 29.4 5.6 43 119-161 87-132 (145)
249 PF12777 MT: Microtubule-bindi 55.9 55 0.0012 30.7 7.7 98 123-221 218-318 (344)
250 PF12761 End3: Actin cytoskele 55.9 97 0.0021 27.8 8.8 28 176-203 157-184 (195)
251 PF06148 COG2: COG (conserved 55.9 17 0.00038 29.3 3.9 47 123-169 66-112 (133)
252 TIGR02132 phaR_Bmeg polyhydrox 55.7 84 0.0018 28.1 8.3 20 150-169 78-97 (189)
253 PF02403 Seryl_tRNA_N: Seryl-t 55.7 93 0.002 24.0 9.7 34 187-220 68-101 (108)
254 PRK15048 methyl-accepting chem 55.6 2.1E+02 0.0045 27.9 14.3 64 141-204 253-316 (553)
255 TIGR00833 actII Transport prot 55.5 2.6E+02 0.0057 29.8 13.4 86 107-193 557-642 (910)
256 TIGR02976 phageshock_pspB phag 55.5 10 0.00023 28.9 2.3 43 117-162 25-67 (75)
257 PF13514 AAA_27: AAA domain 55.4 2E+02 0.0044 31.2 12.7 164 9-215 114-285 (1111)
258 cd07622 BAR_SNX4 The Bin/Amphi 55.3 1.5E+02 0.0032 26.1 10.9 69 108-188 58-126 (201)
259 PF04124 Dor1: Dor1-like famil 55.2 1.7E+02 0.0037 27.3 10.8 69 140-208 17-89 (338)
260 cd00179 SynN Syntaxin N-termin 55.2 1.1E+02 0.0023 24.5 9.7 19 126-144 6-24 (151)
261 COG0598 CorA Mg2+ and Co2+ tra 55.1 1.8E+02 0.0038 27.0 10.9 48 115-162 143-191 (322)
262 PF09738 DUF2051: Double stran 55.0 72 0.0016 30.2 8.3 76 144-221 105-180 (302)
263 TIGR01000 bacteriocin_acc bact 54.9 1.5E+02 0.0032 28.7 10.6 49 124-172 152-200 (457)
264 PF15397 DUF4618: Domain of un 54.8 1.8E+02 0.004 27.1 11.6 47 132-178 62-108 (258)
265 cd07667 BAR_SNX30 The Bin/Amph 54.7 1.8E+02 0.0038 26.8 13.0 31 122-152 103-133 (240)
266 PF12352 V-SNARE_C: Snare regi 54.3 74 0.0016 22.4 7.1 34 159-192 16-49 (66)
267 TIGR02231 conserved hypothetic 54.2 1.2E+02 0.0027 29.8 10.2 46 161-206 127-172 (525)
268 PF06009 Laminin_II: Laminin D 54.2 4.2 9.1E-05 33.5 0.0 60 152-211 18-77 (138)
269 PF06160 EzrA: Septation ring 54.0 2.5E+02 0.0054 28.4 14.0 31 191-221 377-407 (560)
270 KOG0860 Synaptobrevin/VAMP-lik 54.0 1.3E+02 0.0028 25.1 9.4 70 150-219 28-97 (116)
271 PF01920 Prefoldin_2: Prefoldi 54.0 92 0.002 23.3 9.9 29 178-206 68-96 (106)
272 PRK01919 tatB sec-independent 53.8 1.6E+02 0.0034 26.0 9.8 51 122-177 23-73 (169)
273 KOG1961 Vacuolar sorting prote 53.4 70 0.0015 33.5 8.4 72 149-227 73-144 (683)
274 PRK12805 flagellin; Provisiona 53.4 1.8E+02 0.0039 26.6 11.6 30 53-82 105-138 (287)
275 COG3074 Uncharacterized protei 53.3 1.1E+02 0.0023 23.8 8.6 58 153-210 6-63 (79)
276 KOG0978 E3 ubiquitin ligase in 53.2 1.6E+02 0.0034 31.2 11.0 85 122-206 534-621 (698)
277 KOG0240 Kinesin (SMY1 subfamil 53.2 2.9E+02 0.0063 28.9 13.4 62 115-176 385-453 (607)
278 PF05384 DegS: Sensor protein 52.9 93 0.002 26.9 8.0 46 146-191 100-145 (159)
279 PF04380 BMFP: Membrane fusoge 52.6 1E+02 0.0022 23.4 8.3 24 185-208 49-72 (79)
280 COG0598 CorA Mg2+ and Co2+ tra 52.4 1.5E+02 0.0033 27.3 10.0 72 135-206 182-254 (322)
281 PRK15396 murein lipoprotein; P 52.3 71 0.0015 24.6 6.5 35 149-183 30-64 (78)
282 cd07666 BAR_SNX7 The Bin/Amphi 51.9 1.9E+02 0.0042 26.5 10.8 78 124-205 108-196 (243)
283 KOG2196 Nuclear porin [Nuclear 51.5 1.1E+02 0.0024 28.6 8.6 71 139-209 84-157 (254)
284 PRK11085 magnesium/nickel/coba 51.0 2E+02 0.0043 27.1 10.5 84 122-205 142-240 (316)
285 PF04108 APG17: Autophagy prot 50.9 2.4E+02 0.0053 27.3 13.5 32 113-144 197-228 (412)
286 cd07630 BAR_SNX_like The Bin/A 50.9 1.6E+02 0.0035 25.9 9.3 81 115-195 28-109 (198)
287 KOG0804 Cytoplasmic Zn-finger 50.8 2.4E+02 0.0053 28.7 11.4 40 135-174 366-412 (493)
288 PF02181 FH2: Formin Homology 50.7 1.1E+02 0.0023 28.4 8.7 44 187-230 310-353 (370)
289 PF12777 MT: Microtubule-bindi 50.7 2.2E+02 0.0047 26.7 11.0 8 100-107 195-202 (344)
290 PHA02607 wac fibritin; Provisi 50.7 79 0.0017 31.8 8.1 115 121-235 40-162 (454)
291 cd07596 BAR_SNX The Bin/Amphip 50.6 1.4E+02 0.0031 24.6 13.6 47 122-171 60-106 (218)
292 PRK00846 hypothetical protein; 50.3 1.2E+02 0.0025 23.5 7.4 51 142-192 11-61 (77)
293 KOG0239 Kinesin (KAR3 subfamil 50.2 3.3E+02 0.0071 28.6 12.9 25 121-145 177-201 (670)
294 PRK08073 flgL flagellar hook-a 49.9 2E+02 0.0044 26.1 13.9 29 53-81 105-136 (287)
295 PRK04654 sec-independent trans 49.9 1.5E+02 0.0033 27.0 9.2 33 122-154 23-55 (214)
296 KOG0996 Structural maintenance 49.8 1.1E+02 0.0024 34.3 9.6 78 141-219 960-1038(1293)
297 KOG0976 Rho/Rac1-interacting s 49.7 3E+02 0.0065 30.4 12.4 95 128-222 279-373 (1265)
298 PF09748 Med10: Transcription 49.7 1.5E+02 0.0031 24.4 9.1 45 125-169 2-51 (128)
299 KOG4603 TBP-1 interacting prot 49.6 87 0.0019 28.1 7.4 59 149-207 84-144 (201)
300 PHA03395 p10 fibrous body prot 49.6 77 0.0017 25.2 6.4 22 125-146 10-31 (87)
301 TIGR00414 serS seryl-tRNA synt 49.4 97 0.0021 30.1 8.4 16 140-155 47-62 (418)
302 PF00435 Spectrin: Spectrin re 49.3 91 0.002 22.0 9.1 20 151-170 48-67 (105)
303 PF06825 HSBP1: Heat shock fac 49.1 59 0.0013 23.5 5.2 30 135-164 12-41 (54)
304 TIGR02492 flgK_ends flagellar 49.0 2E+02 0.0043 26.7 10.1 43 119-161 127-169 (322)
305 PRK01156 chromosome segregatio 48.9 2.6E+02 0.0056 29.3 11.9 25 134-158 163-187 (895)
306 PF15290 Syntaphilin: Golgi-lo 48.7 1E+02 0.0022 29.4 8.1 28 176-203 114-141 (305)
307 PF06248 Zw10: Centromere/kine 48.5 1.5E+02 0.0033 29.7 9.9 74 125-199 28-103 (593)
308 PRK11032 hypothetical protein; 48.5 69 0.0015 27.8 6.5 86 135-223 12-120 (160)
309 KOG0240 Kinesin (SMY1 subfamil 48.4 2.7E+02 0.0058 29.1 11.5 86 121-210 416-501 (607)
310 PRK15422 septal ring assembly 48.2 1.3E+02 0.0029 23.5 8.6 51 155-205 8-58 (79)
311 PF08580 KAR9: Yeast cortical 48.1 78 0.0017 33.1 8.0 45 111-155 12-58 (683)
312 PF00957 Synaptobrevin: Synapt 48.1 1.1E+02 0.0025 22.7 10.1 20 136-155 6-25 (89)
313 PRK13169 DNA replication intia 48.1 1.2E+02 0.0025 24.8 7.4 33 120-152 2-34 (110)
314 COG5143 SNC1 Synaptobrevin/VAM 48.0 99 0.0022 27.7 7.6 56 131-186 127-185 (190)
315 PF04111 APG6: Autophagy prote 47.3 2.5E+02 0.0054 26.4 11.7 83 137-219 50-132 (314)
316 KOG0809 SNARE protein TLG2/Syn 47.3 2E+02 0.0043 27.6 9.8 104 120-223 133-273 (305)
317 PF08614 ATG16: Autophagy prot 47.3 1.8E+02 0.0039 25.0 9.0 53 140-192 119-171 (194)
318 KOG2264 Exostosin EXT1L [Signa 47.1 1.3E+02 0.0029 31.7 9.2 58 134-191 87-147 (907)
319 PF13094 CENP-Q: CENP-Q, a CEN 47.1 1.4E+02 0.003 24.8 8.1 38 171-208 47-84 (160)
320 COG0497 RecN ATPase involved i 46.9 1.2E+02 0.0025 31.4 8.8 96 112-207 242-356 (557)
321 PF07798 DUF1640: Protein of u 46.9 1.8E+02 0.0039 24.7 11.6 9 41-49 7-15 (177)
322 KOG2629 Peroxisomal membrane a 46.8 1.1E+02 0.0024 29.2 8.0 39 37-78 4-48 (300)
323 PF15070 GOLGA2L5: Putative go 46.7 3.6E+02 0.0077 28.0 13.4 21 143-163 42-62 (617)
324 PRK09343 prefoldin subunit bet 46.7 76 0.0016 25.7 6.2 19 121-139 66-84 (121)
325 KOG0161 Myosin class II heavy 46.6 3.3E+02 0.0072 32.2 13.0 48 115-162 897-947 (1930)
326 PLN02320 seryl-tRNA synthetase 46.6 1.2E+02 0.0027 30.6 8.9 96 107-211 62-162 (502)
327 PF04778 LMP: LMP repeated reg 46.3 2E+02 0.0044 25.1 9.5 81 132-212 6-95 (157)
328 KOG3091 Nuclear pore complex, 46.2 1E+02 0.0022 31.4 8.2 66 147-212 337-402 (508)
329 PF14257 DUF4349: Domain of un 46.1 1E+02 0.0022 27.5 7.5 29 169-197 166-194 (262)
330 KOG2196 Nuclear porin [Nuclear 45.9 1.3E+02 0.0028 28.2 8.2 35 128-162 125-159 (254)
331 PRK10869 recombination and rep 45.8 1.2E+02 0.0027 30.5 8.8 91 112-206 241-337 (553)
332 PF04012 PspA_IM30: PspA/IM30 45.8 2E+02 0.0043 24.8 12.4 41 170-210 96-136 (221)
333 TIGR00383 corA magnesium Mg(2+ 45.6 1.9E+02 0.0041 26.1 9.3 112 123-234 146-289 (318)
334 cd07625 BAR_Vps17p The Bin/Amp 45.5 2.4E+02 0.0051 25.7 10.9 70 117-192 44-118 (230)
335 PF10174 Cast: RIM-binding pro 45.5 2.9E+02 0.0062 29.6 11.6 83 124-206 313-405 (775)
336 COG5124 Protein predicted to b 45.4 2.4E+02 0.0051 25.6 10.5 42 111-155 70-111 (209)
337 PF07106 TBPIP: Tat binding pr 45.3 82 0.0018 26.4 6.4 21 186-206 116-136 (169)
338 KOG4559 Uncharacterized conser 45.2 87 0.0019 25.9 6.3 50 122-171 57-106 (120)
339 PRK04863 mukB cell division pr 45.2 4.9E+02 0.011 30.0 14.0 19 55-73 232-251 (1486)
340 PF12761 End3: Actin cytoskele 45.0 99 0.0021 27.8 7.1 95 98-197 74-185 (195)
341 KOG1029 Endocytic adaptor prot 44.9 71 0.0015 34.6 7.1 44 131-174 438-481 (1118)
342 TIGR02680 conserved hypothetic 44.8 4.9E+02 0.011 29.3 13.8 43 167-209 923-965 (1353)
343 COG0497 RecN ATPase involved i 44.8 1.2E+02 0.0027 31.1 8.6 60 123-183 222-287 (557)
344 TIGR02135 phoU_full phosphate 44.7 1.7E+02 0.0038 23.9 9.9 52 113-164 3-54 (212)
345 PF04012 PspA_IM30: PspA/IM30 44.6 2.1E+02 0.0045 24.7 9.3 40 123-162 95-137 (221)
346 COG5185 HEC1 Protein involved 44.6 2.9E+02 0.0064 28.5 11.0 38 14-52 116-153 (622)
347 PRK13729 conjugal transfer pil 44.4 47 0.001 33.5 5.6 18 178-195 103-120 (475)
348 PRK06696 uridine kinase; Valid 44.4 22 0.00048 30.6 3.0 34 59-92 4-39 (223)
349 cd07597 BAR_SNX8 The Bin/Amphi 44.1 2.3E+02 0.0049 25.5 9.4 80 122-208 87-167 (246)
350 PF04728 LPP: Lipoprotein leuc 44.0 1.3E+02 0.0027 22.1 7.2 14 178-191 16-29 (56)
351 KOG4674 Uncharacterized conser 44.0 2.1E+02 0.0047 33.5 11.0 39 126-164 780-818 (1822)
352 PRK10807 paraquat-inducible pr 44.0 92 0.002 31.5 7.6 40 122-161 420-460 (547)
353 KOG2211 Predicted Golgi transp 43.9 1.7E+02 0.0037 31.2 9.5 83 109-196 54-145 (797)
354 PF03961 DUF342: Protein of un 43.8 1.4E+02 0.0031 28.9 8.7 23 126-148 334-356 (451)
355 PF04977 DivIC: Septum formati 43.6 99 0.0021 22.0 5.9 28 148-175 21-48 (80)
356 cd07624 BAR_SNX7_30 The Bin/Am 43.6 2.2E+02 0.0047 24.7 9.0 69 148-216 18-86 (200)
357 PF02520 DUF148: Domain of unk 43.6 1.6E+02 0.0034 23.0 8.1 33 122-154 43-75 (113)
358 KOG0976 Rho/Rac1-interacting s 43.5 3.3E+02 0.0073 30.0 11.6 74 122-202 109-185 (1265)
359 PLN03094 Substrate binding sub 43.5 92 0.002 30.3 7.2 38 132-169 306-345 (370)
360 PF01601 Corona_S2: Coronaviru 43.4 92 0.002 32.4 7.5 87 123-230 256-345 (610)
361 PF03233 Cauli_AT: Aphid trans 43.4 1.8E+02 0.0038 25.6 8.2 20 190-209 139-158 (163)
362 KOG2391 Vacuolar sorting prote 43.4 1.8E+02 0.0038 28.6 9.0 16 32-47 122-137 (365)
363 cd07651 F-BAR_PombeCdc15_like 43.2 2.3E+02 0.005 24.9 13.8 39 113-151 94-132 (236)
364 PF05508 Ran-binding: RanGTP-b 43.1 1.7E+02 0.0036 28.0 8.7 67 117-183 14-102 (302)
365 PF10191 COG7: Golgi complex c 43.1 2.4E+02 0.0052 29.7 10.7 62 128-189 40-101 (766)
366 PF00957 Synaptobrevin: Synapt 43.0 1.4E+02 0.003 22.3 8.7 28 127-154 4-31 (89)
367 PRK15396 murein lipoprotein; P 42.9 1.1E+02 0.0023 23.7 6.1 8 211-218 64-71 (78)
368 PRK13169 DNA replication intia 42.9 63 0.0014 26.4 5.1 54 146-199 3-56 (110)
369 KOG0994 Extracellular matrix g 42.9 3.3E+02 0.0072 31.2 11.8 11 117-127 1534-1544(1758)
370 KOG0994 Extracellular matrix g 42.5 1.5E+02 0.0032 33.8 9.2 68 135-206 1227-1294(1758)
371 PRK08913 flgL flagellar hook-a 42.3 2.6E+02 0.0056 25.2 15.1 21 53-73 105-126 (301)
372 KOG2180 Late Golgi protein sor 42.1 1.3E+02 0.0029 32.1 8.4 76 136-221 32-107 (793)
373 COG5665 NOT5 CCR4-NOT transcri 42.1 82 0.0018 31.6 6.7 52 124-181 117-174 (548)
374 cd01406 SIR2-like Sir2-like: P 42.0 35 0.00075 29.8 3.8 34 10-48 1-34 (242)
375 COG2096 cob(I)alamin adenosylt 42.0 51 0.0011 29.3 4.9 63 135-206 38-101 (184)
376 PRK04098 sec-independent trans 42.0 2.4E+02 0.0051 24.6 9.5 68 119-186 38-109 (158)
377 TIGR03007 pepcterm_ChnLen poly 41.9 1.6E+02 0.0035 28.4 8.7 31 121-151 156-186 (498)
378 KOG3067 Translin family protei 41.9 2E+02 0.0044 26.2 8.6 93 130-224 6-105 (226)
379 PF06825 HSBP1: Heat shock fac 41.9 1.1E+02 0.0025 22.1 5.8 35 129-163 13-47 (54)
380 PF02520 DUF148: Domain of unk 41.9 1.6E+02 0.0034 23.0 7.2 15 119-133 29-43 (113)
381 KOG0018 Structural maintenance 41.5 2.4E+02 0.0052 31.5 10.5 85 113-202 668-755 (1141)
382 PF07544 Med9: RNA polymerase 40.9 68 0.0015 24.4 4.8 55 130-185 25-79 (83)
383 PF05802 EspB: Enterobacterial 40.8 3.2E+02 0.0069 26.3 10.1 64 145-208 148-211 (317)
384 PLN02678 seryl-tRNA synthetase 40.7 3.6E+02 0.0077 26.9 10.9 32 188-219 73-104 (448)
385 PF06013 WXG100: Proteins of 1 40.6 1.2E+02 0.0026 20.9 10.4 26 131-156 12-37 (86)
386 PF09763 Sec3_C: Exocyst compl 40.6 1.9E+02 0.0042 29.6 9.4 30 154-183 40-69 (701)
387 PRK10361 DNA recombination pro 40.5 4.1E+02 0.0088 26.9 13.0 15 136-150 39-53 (475)
388 PRK11020 hypothetical protein; 40.4 1.2E+02 0.0027 25.3 6.5 22 191-212 36-57 (118)
389 COG0172 SerS Seryl-tRNA synthe 40.1 3E+02 0.0065 27.5 10.2 64 142-208 34-97 (429)
390 PF10211 Ax_dynein_light: Axon 40.0 2.5E+02 0.0055 24.4 11.2 22 183-204 167-188 (189)
391 PHA03386 P10 fibrous body prot 39.9 1E+02 0.0022 24.9 5.7 20 127-146 13-32 (94)
392 PF10392 COG5: Golgi transport 39.9 2E+02 0.0044 23.3 11.9 31 125-155 25-55 (132)
393 PLN02320 seryl-tRNA synthetase 39.7 1.4E+02 0.003 30.4 8.0 51 140-190 110-162 (502)
394 PF04108 APG17: Autophagy prot 39.6 3.6E+02 0.0079 26.1 10.7 36 114-149 194-229 (412)
395 PRK10869 recombination and rep 39.6 2.4E+02 0.0052 28.5 9.7 46 122-167 264-312 (553)
396 PRK09458 pspB phage shock prot 39.4 21 0.00045 27.6 1.8 44 116-162 24-67 (75)
397 PF06705 SF-assemblin: SF-asse 39.4 2.8E+02 0.006 24.7 10.6 73 118-190 66-139 (247)
398 KOG0804 Cytoplasmic Zn-finger 39.3 2.6E+02 0.0056 28.5 9.6 15 143-157 350-364 (493)
399 KOG3595 Dyneins, heavy chain [ 39.3 3.8E+02 0.0082 30.4 11.9 22 111-132 892-913 (1395)
400 PRK09110 flagellar motor prote 39.2 2.3E+02 0.0049 26.5 8.9 88 97-186 10-106 (283)
401 PF14182 YgaB: YgaB-like prote 39.2 1.9E+02 0.0041 22.7 8.4 47 151-197 14-65 (79)
402 TIGR02977 phageshock_pspA phag 39.0 2.7E+02 0.0059 24.4 10.5 89 120-212 93-185 (219)
403 PF06013 WXG100: Proteins of 1 38.9 1.3E+02 0.0028 20.8 9.8 27 135-161 9-35 (86)
404 PF04124 Dor1: Dor1-like famil 38.9 2.2E+02 0.0047 26.6 8.8 60 142-204 12-71 (338)
405 PRK00409 recombination and DNA 38.8 2.2E+02 0.0047 30.2 9.6 132 31-170 128-275 (782)
406 PF07160 DUF1395: Protein of u 38.8 1.4E+02 0.0031 27.1 7.4 27 177-203 20-46 (243)
407 PLN03184 chloroplast Hsp70; Pr 38.7 3E+02 0.0065 28.4 10.4 71 136-208 558-633 (673)
408 PRK12687 flagellin; Reviewed 38.7 3.3E+02 0.0072 25.4 15.0 31 51-81 105-139 (311)
409 KOG2911 Uncharacterized conser 38.7 4E+02 0.0086 26.9 10.8 86 123-209 237-357 (439)
410 KOG0963 Transcription factor/C 38.6 4.1E+02 0.0089 28.0 11.2 83 134-216 179-272 (629)
411 PRK07739 flgK flagellar hook-a 38.5 2.7E+02 0.0058 27.7 9.8 41 119-159 139-179 (507)
412 COG4980 GvpP Gas vesicle prote 38.5 2.3E+02 0.005 23.5 9.7 24 178-201 89-112 (115)
413 KOG0995 Centromere-associated 38.4 2.1E+02 0.0046 29.7 9.1 55 149-203 313-370 (581)
414 PF10158 LOH1CR12: Tumour supp 38.3 2.4E+02 0.0051 23.6 11.0 31 147-177 38-68 (131)
415 PF05911 DUF869: Plant protein 38.3 4.1E+02 0.009 28.5 11.5 89 115-207 599-687 (769)
416 cd01107 HTH_BmrR Helix-Turn-He 38.3 74 0.0016 24.8 4.8 15 107-121 55-69 (108)
417 COG1511 Predicted membrane pro 38.2 4.7E+02 0.01 27.6 11.9 105 120-224 145-258 (780)
418 PRK00290 dnaK molecular chaper 38.1 3.1E+02 0.0067 27.8 10.3 71 137-209 520-595 (627)
419 PRK11020 hypothetical protein; 38.0 32 0.00069 28.7 2.7 50 30-79 9-76 (118)
420 PRK06665 flgK flagellar hook-a 37.8 2.7E+02 0.0058 28.7 9.9 39 119-157 139-177 (627)
421 PRK05431 seryl-tRNA synthetase 37.8 1.5E+02 0.0032 28.9 7.8 14 140-153 45-58 (425)
422 cd00890 Prefoldin Prefoldin is 37.7 1.9E+02 0.0042 22.4 12.0 27 99-138 73-99 (129)
423 PF10146 zf-C4H2: Zinc finger- 37.6 3.2E+02 0.0069 24.9 12.6 10 183-192 57-66 (230)
424 PF12329 TMF_DNA_bd: TATA elem 37.5 1.8E+02 0.0038 21.8 8.8 20 160-179 28-47 (74)
425 PF07851 TMPIT: TMPIT-like pro 37.5 2.5E+02 0.0054 27.1 9.0 30 120-149 19-48 (330)
426 TIGR00985 3a0801s04tom mitocho 37.4 2.3E+02 0.0051 24.3 8.0 21 96-116 16-37 (148)
427 PF11460 DUF3007: Protein of u 37.4 27 0.00059 28.5 2.2 23 145-169 79-101 (104)
428 TIGR02977 phageshock_pspA phag 37.3 2.9E+02 0.0062 24.3 10.9 40 145-184 93-132 (219)
429 PRK09039 hypothetical protein; 37.2 3.7E+02 0.008 25.5 14.0 41 168-208 126-166 (343)
430 PLN03226 serine hydroxymethylt 37.1 4.2E+02 0.009 26.2 10.8 31 55-85 312-343 (475)
431 cd07647 F-BAR_PSTPIP The F-BAR 37.1 3E+02 0.0064 24.4 11.7 41 116-156 96-136 (239)
432 PRK09546 zntB zinc transporter 37.0 3.2E+02 0.007 25.0 9.5 33 173-205 223-255 (324)
433 PF13747 DUF4164: Domain of un 37.0 2E+02 0.0043 22.3 10.3 49 169-217 36-84 (89)
434 TIGR01010 BexC_CtrB_KpsE polys 36.9 3.5E+02 0.0076 25.1 11.5 85 120-204 164-260 (362)
435 PF05164 ZapA: Cell division p 36.8 1.2E+02 0.0026 22.2 5.5 14 148-161 76-89 (89)
436 PF05739 SNARE: SNARE domain; 36.7 1.4E+02 0.003 20.5 8.4 39 152-190 19-57 (63)
437 KOG0946 ER-Golgi vesicle-tethe 36.7 1.1E+02 0.0023 33.4 6.9 81 133-213 809-889 (970)
438 PRK10778 dksA RNA polymerase-b 36.6 58 0.0013 27.7 4.2 49 107-155 6-57 (151)
439 cd00024 CHROMO Chromatin organ 36.5 27 0.0006 23.1 1.9 24 104-127 22-45 (55)
440 PF09278 MerR-DNA-bind: MerR, 36.5 1.3E+02 0.0028 20.8 5.4 27 143-169 35-61 (65)
441 PF03938 OmpH: Outer membrane 36.5 2.3E+02 0.005 22.9 9.8 27 164-190 79-105 (158)
442 PRK04406 hypothetical protein; 36.4 1.9E+02 0.0041 21.9 7.9 50 142-191 9-58 (75)
443 PF05055 DUF677: Protein of un 36.4 2.6E+02 0.0057 26.8 9.0 24 185-208 294-317 (336)
444 TIGR02350 prok_dnaK chaperone 36.4 3.6E+02 0.0078 27.0 10.4 71 136-208 517-592 (595)
445 KOG3202 SNARE protein TLG1/Syn 36.2 2.3E+02 0.0049 26.1 8.2 41 134-178 153-193 (235)
446 KOG3433 Protein involved in me 36.2 3.1E+02 0.0067 24.9 8.8 76 111-193 69-144 (203)
447 PRK07191 flgK flagellar hook-a 36.1 3.1E+02 0.0068 26.8 9.7 37 119-155 127-163 (456)
448 PRK02119 hypothetical protein; 36.1 1.9E+02 0.004 21.7 7.4 51 142-192 7-57 (73)
449 PF11358 DUF3158: Protein of u 36.1 69 0.0015 27.9 4.6 32 42-73 18-50 (159)
450 PF15619 Lebercilin: Ciliary p 36.1 3E+02 0.0066 24.2 9.7 34 171-204 156-189 (194)
451 PF04102 SlyX: SlyX; InterPro 36.0 1.7E+02 0.0038 21.4 7.0 46 147-192 7-52 (69)
452 PTZ00446 vacuolar sorting prot 36.0 2.6E+02 0.0055 24.9 8.3 28 141-168 31-58 (191)
453 PHA01750 hypothetical protein 36.0 1.1E+02 0.0024 23.4 5.2 13 151-163 42-54 (75)
454 PF02346 Vac_Fusion: Chordopox 35.9 1.5E+02 0.0033 21.7 5.7 48 156-203 6-53 (57)
455 KOG0964 Structural maintenance 35.7 5.9E+02 0.013 28.6 12.2 86 123-208 668-756 (1200)
456 PF10334 DUF2421: Protein of u 35.6 3.1E+02 0.0067 24.1 12.0 114 121-234 11-155 (229)
457 PF08496 Peptidase_S49_N: Pept 35.6 52 0.0011 28.2 3.8 37 58-94 110-151 (155)
458 COG4477 EzrA Negative regulato 35.5 5.3E+02 0.012 26.8 11.4 72 122-193 350-431 (570)
459 TIGR03818 MotA1 flagellar moto 35.2 2.1E+02 0.0046 26.6 8.0 88 97-186 10-106 (282)
460 TIGR01834 PHA_synth_III_E poly 35.1 2.8E+02 0.006 26.7 8.9 94 113-206 195-309 (320)
461 KOG3990 Uncharacterized conser 35.0 1.2E+02 0.0025 28.9 6.2 57 136-204 228-285 (305)
462 TIGR03752 conj_TIGR03752 integ 35.0 4.8E+02 0.01 26.5 10.9 78 122-205 62-142 (472)
463 PRK01156 chromosome segregatio 34.9 3.4E+02 0.0073 28.4 10.3 11 149-159 368-378 (895)
464 PF12329 TMF_DNA_bd: TATA elem 34.8 2E+02 0.0042 21.6 7.5 66 157-222 4-69 (74)
465 COG1579 Zn-ribbon protein, pos 34.8 3.7E+02 0.008 24.8 13.2 16 146-161 61-76 (239)
466 PRK05771 V-type ATP synthase s 34.7 1.1E+02 0.0024 31.0 6.6 46 167-212 88-133 (646)
467 PF04871 Uso1_p115_C: Uso1 / p 34.6 2.7E+02 0.0058 23.1 10.4 70 136-205 26-103 (136)
468 KOG4677 Golgi integral membran 34.6 4.3E+02 0.0093 27.1 10.4 49 106-159 157-205 (554)
469 PF11802 CENP-K: Centromere-as 34.5 4E+02 0.0087 25.1 10.4 128 55-224 54-182 (268)
470 PF01923 Cob_adeno_trans: Coba 34.4 1.7E+02 0.0037 24.6 6.7 44 163-206 51-96 (163)
471 PTZ00446 vacuolar sorting prot 34.3 2.9E+02 0.0062 24.6 8.3 15 55-69 43-57 (191)
472 PF04065 Not3: Not1 N-terminal 34.3 1.6E+02 0.0035 26.9 6.9 54 120-173 123-192 (233)
473 PF04678 DUF607: Protein of un 34.2 1.1E+02 0.0023 26.3 5.6 50 124-174 38-87 (180)
474 PF11471 Sugarporin_N: Maltopo 34.2 1.2E+02 0.0026 22.1 5.0 54 120-176 4-57 (60)
475 smart00503 SynN Syntaxin N-ter 34.1 2.1E+02 0.0045 21.7 9.7 26 126-151 8-33 (117)
476 PHA03332 membrane glycoprotein 33.9 2.2E+02 0.0047 32.0 8.7 11 60-70 807-817 (1328)
477 KOG0977 Nuclear envelope prote 33.9 3.6E+02 0.0078 27.9 9.9 76 122-197 116-194 (546)
478 PF05266 DUF724: Protein of un 33.8 3.3E+02 0.0072 23.9 10.8 77 121-197 105-184 (190)
479 cd04779 HTH_MerR-like_sg4 Heli 33.8 2.4E+02 0.0053 23.3 7.4 54 123-176 58-117 (134)
480 KOG1029 Endocytic adaptor prot 33.8 4.6E+02 0.01 28.9 10.9 102 112-217 479-590 (1118)
481 PF07439 DUF1515: Protein of u 33.6 2.8E+02 0.006 23.0 7.5 57 122-178 11-67 (112)
482 PF15112 DUF4559: Domain of un 33.6 1E+02 0.0022 29.5 5.7 86 118-207 203-295 (307)
483 cd07623 BAR_SNX1_2 The Bin/Amp 33.4 3.4E+02 0.0073 23.9 9.9 80 115-196 36-116 (224)
484 COG0172 SerS Seryl-tRNA synthe 33.3 2E+02 0.0044 28.7 7.9 65 141-205 33-101 (429)
485 PRK05683 flgK flagellar hook-a 33.2 3.5E+02 0.0076 28.3 9.9 85 119-203 127-211 (676)
486 cd07662 BAR_SNX6 The Bin/Amphi 33.2 3.5E+02 0.0077 24.6 8.9 81 114-196 46-126 (218)
487 PF13815 Dzip-like_N: Iguana/D 33.0 2.2E+02 0.0049 22.7 6.9 47 135-181 71-117 (118)
488 PF12128 DUF3584: Protein of u 33.0 6.4E+02 0.014 27.9 12.3 92 120-211 275-367 (1201)
489 PF02388 FemAB: FemAB family; 33.0 1.4E+02 0.003 28.7 6.6 65 123-188 239-303 (406)
490 PLN03223 Polycystin cation cha 32.9 2.5E+02 0.0054 32.5 9.1 92 117-216 764-860 (1634)
491 PRK08027 flgL flagellar hook-a 32.9 4.1E+02 0.0088 24.7 13.1 146 31-186 80-280 (317)
492 cd00176 SPEC Spectrin repeats, 32.8 2.5E+02 0.0055 22.3 8.8 102 133-235 33-134 (213)
493 PF01544 CorA: CorA-like Mg2+ 32.8 1.3E+02 0.0028 26.1 5.9 62 135-198 116-177 (292)
494 PRK02793 phi X174 lysis protei 32.8 2.1E+02 0.0045 21.4 7.5 53 139-191 3-55 (72)
495 COG4842 Uncharacterized protei 32.8 2.3E+02 0.0051 21.9 10.8 79 126-204 10-93 (97)
496 TIGR03752 conj_TIGR03752 integ 32.8 4.5E+02 0.0097 26.7 10.2 81 125-208 58-138 (472)
497 PRK09841 cryptic autophosphory 32.7 2.4E+02 0.0051 29.3 8.6 77 131-207 254-332 (726)
498 PF13874 Nup54: Nucleoporin co 32.6 2.1E+02 0.0046 23.6 6.9 69 122-190 54-125 (141)
499 KOG3385 V-SNARE [Intracellular 32.6 2.2E+02 0.0048 23.8 6.8 65 157-221 27-92 (118)
500 cd04786 HTH_MerR-like_sg7 Heli 32.6 1.5E+02 0.0032 24.3 5.9 63 148-210 48-116 (131)
No 1
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=100.00 E-value=2e-62 Score=401.13 Aligned_cols=126 Identities=50% Similarity=0.903 Sum_probs=123.6
Q ss_pred CCCCcceeehhhhhHhhhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 026425 83 NSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 83 ~sGg~~~~~ivpaA~vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~ 162 (238)
+|| ++++||+|||++||+|||||||||||||||||||||||+|||++|+|||||||++|++|||||+||||+||+|||+
T Consensus 1 ~sg-~~~~~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe 79 (126)
T PF07889_consen 1 GSG-GWSSLIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDE 79 (126)
T ss_pred CCC-CccchhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 355 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 163 QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 163 ~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
|.|++++|++||+++++|+++|++|+++||++|++||+||++||+||
T Consensus 80 ~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 80 QKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998
No 2
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=96.90 E-value=0.0028 Score=50.48 Aligned_cols=85 Identities=21% Similarity=0.358 Sum_probs=42.7
Q ss_pred HhhhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 026425 97 TLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (238)
Q Consensus 97 ~vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (238)
++.+++|+++||+ ++. =||+|..+.. |++.-.+...|++.|+.+++.+ =+++++..
T Consensus 14 a~~~~~~~~~~~~---l~~-~~a~~~~~~~---------------l~~~~~~~~~Rl~~lE~~l~~L-----Pt~~dv~~ 69 (106)
T PF10805_consen 14 AVFGIAGGIFWLW---LRR-TYAKREDIEK---------------LEERLDEHDRRLQALETKLEHL-----PTRDDVHD 69 (106)
T ss_pred HHHHHHHHHHHHH---HHH-hhccHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHH
Confidence 3445666777775 222 3666554433 1111122344455555444433 11556666
Q ss_pred hhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 177 ACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 177 v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
++..++++.+|++.+...+++++-..+.+
T Consensus 70 L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 70 LQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655555555544443
No 3
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=95.86 E-value=0.087 Score=49.96 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=21.6
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhh------hhhhhhhhhHHHHHHHH
Q 026425 174 VEEACDDLFKVEHNLKDLQSMIYCLDG------KIDSLADKQDITNIGMY 217 (238)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~------Ki~~ie~kQd~tn~GV~ 217 (238)
+..++..+......+..+++-+..|++ .+.++|+=-..+|+-++
T Consensus 95 ~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyLlrlA~qrL~ 144 (372)
T PF04375_consen 95 LQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYLLRLANQRLQ 144 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHHHH
Confidence 333333344444555555555555554 44555555555555444
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.81 E-value=0.35 Score=42.98 Aligned_cols=98 Identities=15% Similarity=0.226 Sum_probs=71.1
Q ss_pred heeeeee----eccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 026425 102 GYGYMWW----KGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (238)
Q Consensus 102 GYgYmwW----KGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (238)
||.++.- .|| +++=+-.+..++..-+..+-++|+.+.+.|+.+.....+|-..+..++++.......++++-.++
T Consensus 66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777763 378 44444556678999999999999999999999999999999999999888766666655555555
Q ss_pred hhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 178 CDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
+..+ ..++.-++.|+.+++.+..
T Consensus 145 ~~~l-------~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 145 KNQL-------IVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 5444 4455555555666555553
No 5
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=95.65 E-value=0.23 Score=39.54 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=46.0
Q ss_pred hhhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 026425 98 LGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (238)
Q Consensus 98 vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (238)
+.-+|.||+-.+ ++..|+++|..|++.++..+++..+..+..+++++.+
T Consensus 71 ~v~iG~g~~vE~-------------------------------~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 71 LVSIGSGYYVEK-------------------------------DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred EEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999888 4689999999999999999999999888888888887
Q ss_pred hhhHH
Q 026425 178 CDDLF 182 (238)
Q Consensus 178 ~~d~~ 182 (238)
...+.
T Consensus 120 ~~~l~ 124 (126)
T TIGR00293 120 EQEAQ 124 (126)
T ss_pred HHHHh
Confidence 76543
No 6
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=95.39 E-value=0.55 Score=38.22 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=39.2
Q ss_pred hhhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 026425 98 LGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (238)
Q Consensus 98 vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (238)
+.-+|+||+-.+- +..|++.|..|++.++..+++..+-...+++++..+
T Consensus 79 ~v~lG~g~~vE~~-------------------------------~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 79 IVSLGAGYSAEKD-------------------------------LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred EEEcCCCEEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999998884 577788888888888888777766666666666555
Q ss_pred hhhHHH
Q 026425 178 CDDLFK 183 (238)
Q Consensus 178 ~~d~~~ 183 (238)
+..+.+
T Consensus 128 ~~~l~~ 133 (140)
T PRK03947 128 AQELQQ 133 (140)
T ss_pred HHHHHH
Confidence 544433
No 7
>PRK11637 AmiB activator; Provisional
Probab=95.38 E-value=0.22 Score=47.57 Aligned_cols=80 Identities=3% Similarity=0.175 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 026425 124 MATAVSNLNKHLESVTEALT---VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~---~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (238)
..+-...+-+++++....+. .-++++.+.|+.++.++++..+-...++.++.++..+++....++...+.-+..+..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444 333344455666666666665555555555555555555555555555555555544
Q ss_pred hhh
Q 026425 201 KID 203 (238)
Q Consensus 201 Ki~ 203 (238)
.+.
T Consensus 125 ~l~ 127 (428)
T PRK11637 125 LLA 127 (428)
T ss_pred HHH
Confidence 443
No 8
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=95.35 E-value=0.14 Score=41.47 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=46.2
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 118 yVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
|||++-+...=.+--.-|..+-..+... -...+|+.|..+.+.|-|-++..+.++ ...+.-++.|-.....
T Consensus 22 YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~-------k~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 22 YVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQ-------KAQGKTLQLILKTLQS 92 (102)
T ss_dssp B-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 8999999876655555555555555433 344455555555555544444444444 4555666667777777
Q ss_pred hhhhhhhhhh
Q 026425 198 LDGKIDSLAD 207 (238)
Q Consensus 198 Le~Ki~~ie~ 207 (238)
+..|||+||.
T Consensus 93 inkRLD~~E~ 102 (102)
T PF01519_consen 93 INKRLDKMES 102 (102)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHhhccC
Confidence 7889988874
No 9
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=94.54 E-value=1 Score=36.06 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=61.7
Q ss_pred chHHHHHHHHHHHHHH-hhhc------------CCCeEEEeCCCCCcceeehhh-hhHhhhhheeeeeeeccccchhHHH
Q 026425 54 FTDAIKDQLNRLKFEC-QRAS------------SGQIFVRNENSGGNATSLMIP-AATLGALGYGYMWWKGLSFADLMYV 119 (238)
Q Consensus 54 ~~d~L~aQV~~L~~El-~las------------~r~iTvvn~~sGg~~~~~ivp-aA~vGavGYgYmwWKGws~sDlMyV 119 (238)
..+.|.+|+++|...+ ++.. ...-+.|+-|+|--..+-|.+ ==++.-+|.||+-.+
T Consensus 14 ~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~---------- 83 (129)
T cd00584 14 EIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEK---------- 83 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEe----------
Confidence 3566666666666666 4332 112344555555111111110 002357899998776
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (238)
++..|++.+..||+.+...+++..+....++++++.+...+++
T Consensus 84 ---------------------~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 84 ---------------------DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred ---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788999999999999888888888888888777765554
No 10
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.23 E-value=0.83 Score=44.21 Aligned_cols=90 Identities=14% Similarity=0.270 Sum_probs=66.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 129 ~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
+.+..++++....+...++.+...|+.+..++++...-...++.++..++..+.+++.+++.+...+..++.++..++.+
T Consensus 191 ~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~ 270 (562)
T PHA02562 191 DHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSK 270 (562)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 33344444444555566666677788888888888888899999999999999999999888888888888888877766
Q ss_pred hHHHHHHHHH
Q 026425 209 QDITNIGMYL 218 (238)
Q Consensus 209 Qd~tn~GV~~ 218 (238)
-......+.+
T Consensus 271 l~~~~~~~~~ 280 (562)
T PHA02562 271 IEQFQKVIKM 280 (562)
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 11
>PRK14011 prefoldin subunit alpha; Provisional
Probab=94.06 E-value=0.75 Score=38.89 Aligned_cols=41 Identities=10% Similarity=0.298 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (238)
++.+|+.+|..||+.|+..+++..+..+.+.+++.+++..+
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999988887777543
No 12
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=94.02 E-value=1.3 Score=33.51 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=56.4
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhHHhHHHHHHHHHHH--HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 134 HLESVTEAL---TVAKKHLTQRIQNLNDKVEKQNEISKDI--RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 134 qLe~Vs~sL---~~tKkhLsqRI~~vd~kld~~~eis~~i--~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
.|+.+.+.| .....+|..+|+.+..+|+++.++.... -+.+. -...+.+|..+|.+++..+..|..|+..|+
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444 4556789999999999999998866544 33444 788899999999999999999999998774
No 13
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.76 E-value=3 Score=37.68 Aligned_cols=89 Identities=13% Similarity=0.272 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 026425 124 MATAVSNLNKHLES-VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 124 ms~Av~sv~kqLe~-Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (238)
|++|...+-.+-+. +...-..+......+++.+........+-....++++.+++..+.....++.+++.....||..|
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 88888888888774 44555678888888999999888888888889999999999999999999999999999999999
Q ss_pred hhhhhhhHHH
Q 026425 203 DSLADKQDIT 212 (238)
Q Consensus 203 ~~ie~kQd~t 212 (238)
..++..-...
T Consensus 247 ~~le~~~~~~ 256 (312)
T PF00038_consen 247 RELEQRLDEE 256 (312)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887554443
No 14
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.53 E-value=1.7 Score=36.34 Aligned_cols=63 Identities=24% Similarity=0.294 Sum_probs=52.1
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
.|+.||+-|...|++...--+.+.+.+.++....+++..-+..+..--..+|.|++.++.+-.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 377788888888888888888888888888888888888888888888888888888876643
No 15
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.42 E-value=1.9 Score=38.47 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 026425 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (238)
++.++......+..+.++||++.++.-++..+-.++.++++..++.-.++...-+++.+.-+..|+.+++.++..+.--.
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666677788888888888887777777777888777777777777777777777777777777775444333
Q ss_pred ----HHHHHHHHHhh
Q 026425 214 ----IGMYLLCNFVD 224 (238)
Q Consensus 214 ----~GV~~Lc~f~~ 224 (238)
.=+..|-+|++
T Consensus 105 p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 105 PLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHh
Confidence 24455556665
No 16
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=93.40 E-value=0.61 Score=36.44 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=49.4
Q ss_pred CeEEEeCCCCCcceeeh-hhhhHhhhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 026425 76 QIFVRNENSGGNATSLM-IPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ 154 (238)
Q Consensus 76 ~iTvvn~~sGg~~~~~i-vpaA~vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~ 154 (238)
.-+.|+-|+|.-+.+-| -|-=++.-+|.||+-.+- +..|.+.+..||+
T Consensus 39 ~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s-------------------------------~~eA~~~l~~r~~ 87 (120)
T PF02996_consen 39 HEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMS-------------------------------LEEAIEFLKKRIK 87 (120)
T ss_dssp -EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEE-------------------------------HHHHHHHHHHHHH
T ss_pred ceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEec-------------------------------HHHHHHHHHHHHH
Confidence 44456666662222222 122234579999998883 5788888888888
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 026425 155 NLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (238)
Q Consensus 155 ~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (238)
.+..++++..+-.+.+++++..+...+++
T Consensus 88 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 88 ELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777777666665554443
No 17
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=0.33 Score=45.74 Aligned_cols=98 Identities=11% Similarity=0.270 Sum_probs=61.1
Q ss_pred cceeehhhhhHhhhhhee-eeeeeccccchhHH--------HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 026425 87 NATSLMIPAATLGALGYG-YMWWKGLSFADLMY--------VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (238)
Q Consensus 87 ~~~~~ivpaA~vGavGYg-YmwWKGws~sDlMy--------VTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd 157 (238)
.|--|++-|++.+++.|+ |-.||-|=+| +|| .-|+.|.+=...+.|-+.++-+.++++++.++..-+.++
T Consensus 82 rwrdy~vmAvi~aGi~y~~y~~~K~YV~P-~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els 160 (300)
T KOG2629|consen 82 RWRDYFVMAVILAGIAYAAYRFVKSYVLP-RFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELS 160 (300)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667788888885 7789988544 333 345566666666777777777777777777766666666
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 026425 158 DKVEKQNEISKDIRKNVEEACDDLFKVE 185 (238)
Q Consensus 158 ~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (238)
..|+...+..-++......+++++..|.
T Consensus 161 ~~L~~l~~~~~~~s~~~~k~esei~~Ik 188 (300)
T KOG2629|consen 161 RALASLKNTLVQLSRNIEKLESEINTIK 188 (300)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6666665554444444444444443333
No 18
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.23 E-value=6 Score=38.14 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=28.8
Q ss_pred ccccceeeccCCCc---chHH-----HHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHH-hhh
Q 026425 18 LGYTGTILVKDGKL---PELL-----RELQSLVERLSKSGEQDNFTDAIKDQLNRLKFEC-QRA 72 (238)
Q Consensus 18 AG~~GSvl~k~G~L---sd~~-----g~lq~~~k~~~k~g~~~~~~d~L~aQV~~L~~El-~la 72 (238)
+|++..|.+++|.. .|++ ..++.-+..++. ....+.+++.||.-|+ .+.
T Consensus 67 ~G~v~~i~V~eG~~V~~G~~L~~ld~~~~~~~~~~~~~------~~~~~~~~~~rL~a~~~~~~ 124 (457)
T TIGR01000 67 NNAIKENYLKENKFVKKGDLLVVYDNGNEENQKQLLEQ------QLDNLKDQKKSLDTLKQSIE 124 (457)
T ss_pred CcEEEEEEcCCCCEecCCCEEEEECchHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 47888888888864 3332 233333333332 2566777777777777 443
No 19
>PRK11637 AmiB activator; Provisional
Probab=93.22 E-value=1.6 Score=41.76 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=52.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 129 SNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 129 ~sv~kqLe~Vs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
+..-++|+++...|...++.+. +++..+..++++...=...+.+++.+++.+++.+..+++.++.-+..++.+|+..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888777777666 6666666666666555556666666666666666666666666666666666655
Q ss_pred h
Q 026425 206 A 206 (238)
Q Consensus 206 e 206 (238)
+
T Consensus 123 ~ 123 (428)
T PRK11637 123 E 123 (428)
T ss_pred H
Confidence 4
No 20
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=93.21 E-value=0.12 Score=49.13 Aligned_cols=86 Identities=14% Similarity=0.323 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 123 SMATAVSNLNKHLESVTEALTVAK---KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tK---khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
+|+.++.++...|..++..|+.-+ .+|+..|..+...+.+.......++..|..+..|+++.+.||-..--.|..||
T Consensus 67 ~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe 146 (326)
T PF04582_consen 67 DLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE 146 (326)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence 444455555555555554444333 34556666666677777777777788888888888888888888888888888
Q ss_pred hhhhhhhhh
Q 026425 200 GKIDSLADK 208 (238)
Q Consensus 200 ~Ki~~ie~k 208 (238)
.|+..+|..
T Consensus 147 ~RV~~LEs~ 155 (326)
T PF04582_consen 147 SRVKALESG 155 (326)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 888888764
No 21
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=93.21 E-value=1.6 Score=36.31 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=14.1
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 026425 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (238)
+++++..++.|+..++.-|..+...+..||+
T Consensus 94 v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 94 VREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444444444443
No 22
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=93.19 E-value=1.3 Score=34.56 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 026425 138 VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (238)
Q Consensus 138 Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (238)
|..+|.++-++|.+.|++|+..++.-.+..... .++...+..++.|-..+-+-....+.+..++|..|.-....+.
T Consensus 2 ~~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 2 VTYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777888887777666544433 5556666677777777777777778888888887777666666
Q ss_pred HHHHHh
Q 026425 218 LLCNFV 223 (238)
Q Consensus 218 ~Lc~f~ 223 (238)
...+-+
T Consensus 78 ~a~e~I 83 (89)
T PF13747_consen 78 SAIETI 83 (89)
T ss_pred HHHHHH
Confidence 655544
No 23
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=92.61 E-value=3.7 Score=34.29 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH----------HHHHHhhhhHHHhhhhHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR----------KNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~----------~eV~~v~~d~~~i~~dv~~v 191 (238)
|.+-+-|.-...||.+-.+.++....+|.+||-.+|..+....+....-+ ++|.+++..+++++.-++++
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~ 106 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQT 106 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999998776554444333 23555555555555544444
Q ss_pred HHHHHhhh
Q 026425 192 QSMIYCLD 199 (238)
Q Consensus 192 ~~~V~~Le 199 (238)
=..++.|.
T Consensus 107 v~~ie~LN 114 (131)
T PF10158_consen 107 VPSIETLN 114 (131)
T ss_pred HHHHHHHH
Confidence 44444443
No 24
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=92.03 E-value=1.9 Score=32.68 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=14.3
Q ss_pred HHHhHhhHHHHHHHHHHhhHHHHHHHHHH
Q 026425 117 MYVTRKSMATAVSNLNKHLESVTEALTVA 145 (238)
Q Consensus 117 MyVTkr~ms~Av~sv~kqLe~Vs~sL~~t 145 (238)
++.+-+++....+.+.+.++.+.+.+...
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~~i 45 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVDPI 45 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455555555555555544444444333
No 25
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.63 E-value=3.3 Score=40.79 Aligned_cols=95 Identities=16% Similarity=0.244 Sum_probs=67.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (238)
++|+|....|++.. ++|....++..+...-.+..++++..+..-+.++..|++.++..+..++.++.-++..+ ..
T Consensus 38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE 112 (420)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence 77777777776554 44555566666666667777788888888888888888888888888899988887655 77
Q ss_pred HHHHHHHHHHhhcccccccc
Q 026425 213 NIGMYLLCNFVDGKKGRTTE 232 (238)
Q Consensus 213 n~GV~~Lc~f~~~~~~~~p~ 232 (238)
..++....--+-.+.++=|.
T Consensus 113 qr~~La~~L~A~~r~g~~p~ 132 (420)
T COG4942 113 QRRRLAEQLAALQRSGRNPP 132 (420)
T ss_pred HHHHHHHHHHHHHhccCCCC
Confidence 77776655444444444443
No 26
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=91.51 E-value=1 Score=43.75 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=24.0
Q ss_pred hhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhH
Q 026425 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKV 160 (238)
Q Consensus 99 GavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kl 160 (238)
-++|+||.|| |. --.......-+.+..+|+.......+.+..|.+.+..++.++
T Consensus 48 la~g~g~y~~-~~-------qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l 101 (390)
T PRK10920 48 LAAGAGLYYH-GK-------QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKAL 101 (390)
T ss_pred HHHhhHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666555 21 111223444444555555554444444444444444433333
No 27
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.04 E-value=4.3 Score=38.99 Aligned_cols=69 Identities=13% Similarity=0.270 Sum_probs=42.6
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 026425 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (238)
Q Consensus 115 DlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (238)
|=|=-=+.+++++...+..||+.+++.+..+...+..|=..+..+++....-=+..++++.++++...+
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~ 291 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQ 291 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777888888888877777777666666555555555444444444444444433333
No 28
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.92 E-value=2.8 Score=33.38 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=47.3
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh--hhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV--EHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i--~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (238)
..+++.+++++++ ..+.++.+..++.+. ..|+..++-.+..++++++.+++.=+.-++-+.+|.+
T Consensus 34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444443 355577777777887 8888888888888899999888888777777777765
No 29
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=90.72 E-value=8.6 Score=31.86 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=14.5
Q ss_pred chHHHHHHHHHHHHHH-hhhcC
Q 026425 54 FTDAIKDQLNRLKFEC-QRASS 74 (238)
Q Consensus 54 ~~d~L~aQV~~L~~El-~las~ 74 (238)
+...+...++.++.+. .|+-+
T Consensus 41 ~i~~~~~~i~~ia~qt~lLalN 62 (213)
T PF00015_consen 41 DISEILSLINEIAEQTNLLALN 62 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHhhhh
Confidence 4566667777888888 66654
No 30
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=89.70 E-value=7.7 Score=33.04 Aligned_cols=83 Identities=14% Similarity=0.295 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH-HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK-QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~-~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (238)
.++..++.+-.||..+.+.|...-..+..|++.+-..+++ ...+++.++.|++.+..++...-+.|-.+......|=..
T Consensus 35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a 114 (140)
T PF04513_consen 35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567777778888888888888888777777777766654 345667788888888888777777776666666655555
Q ss_pred hhhh
Q 026425 202 IDSL 205 (238)
Q Consensus 202 i~~i 205 (238)
+.-+
T Consensus 115 ln~l 118 (140)
T PF04513_consen 115 LNNL 118 (140)
T ss_pred HHHh
Confidence 5433
No 31
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.69 E-value=4 Score=37.97 Aligned_cols=68 Identities=16% Similarity=0.347 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
|.-+..+...++.+...|+.+|.++++...=....++++++.+.++.....+|+.+..-+......+.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667778888889999999999988888888888888888888888888887776665554443
No 32
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=89.49 E-value=8.8 Score=30.89 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhHHHH
Q 026425 125 ATAVSNLNKHLESVT 139 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs 139 (238)
.+.+.++..+++.+.
T Consensus 4 ~~~~~~l~~~~~~l~ 18 (202)
T PF01442_consen 4 DDRLDSLSSRTEELE 18 (202)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334433333333
No 33
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.08 E-value=9.2 Score=37.07 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=22.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 157 NDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 157 d~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
..++.+........++++.........+..++.+++..+..++.++.+++
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~ 385 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ 385 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Confidence 33333333333333444444444444455555555555554444444433
No 34
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=88.57 E-value=10 Score=35.54 Aligned_cols=99 Identities=15% Similarity=0.224 Sum_probs=74.3
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh--------------
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE-------------- 185 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~-------------- 185 (238)
.-+.+-.=..++..|+|.++..|...+.+|...+..+|.--++..+..+++..-+...+..+..+.
T Consensus 85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d 164 (333)
T PF05816_consen 85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGD 164 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccC
Confidence 344444556899999999999999999999999999998877777766666655444333333333
Q ss_pred ----hhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Q 026425 186 ----HNLKDLQSMIYCLDGKIDSLADKQDITNIGMYL 218 (238)
Q Consensus 186 ----~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 218 (238)
.....+.+.+..||.|+..++--+..+..+.--
T Consensus 165 ~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pq 201 (333)
T PF05816_consen 165 QMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQ 201 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 234667888999999999999888888777644
No 35
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.02 E-value=12 Score=33.29 Aligned_cols=71 Identities=11% Similarity=0.197 Sum_probs=48.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 026425 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 130 sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (238)
...++..+--+.+...|..|.++++.+...++....-.+..++.|...+..+..+..+++++..+=..|..
T Consensus 35 ~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 35 QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666777778888888888888777777777777777777777777777777776644444443
No 36
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=87.74 E-value=4.4 Score=33.89 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 185 EHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
..||+.++..|..|+.+|+++..+
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~~~ 131 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLANK 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999999999998887765
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.70 E-value=8.5 Score=34.27 Aligned_cols=115 Identities=10% Similarity=0.144 Sum_probs=71.8
Q ss_pred hhcCCCeEEEeCCCCCcceeehhhhhHhhhhheeeeeeeccccchhHHH--hHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 026425 71 RASSGQIFVRNENSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYV--TRKSMATAVSNLNKHLESVTEALTVAKKH 148 (238)
Q Consensus 71 las~r~iTvvn~~sGg~~~~~ivpaA~vGavGYgYmwWKGws~sDlMyV--Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkh 148 (238)
+-+.-++||+....+++|+=.--+ =|-.||.+-| =+++-.=+ -=..+.+-++.+..+|++.......-+.+
T Consensus 50 l~~G~~v~vl~~~~~~~w~~Vr~~---~G~~GWV~~~----~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~ 122 (206)
T PRK10884 50 LNAGEEVTLLQVNANTNYAQIRDS---KGRTAWIPLK----QLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAE 122 (206)
T ss_pred EcCCCEEEEEEEcCCCCEEEEEeC---CCCEEeEEHH----HhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344567787764433344222211 1445554433 23322211 12357777777788888888888888888
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
+.++++..+....+.++=-++.++++..++.++....-+.+.++
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777777778888888866666555555554
No 38
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=87.59 E-value=15 Score=30.43 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=7.2
Q ss_pred HHHhhhhHHHHHHHHHhhhh
Q 026425 181 LFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 181 ~~~i~~dv~~v~~~V~~Le~ 200 (238)
+..|...++.+...+..+..
T Consensus 137 l~~i~~~~~~i~~~i~~i~~ 156 (213)
T PF00015_consen 137 LEEIAESVEEISDSIEEISE 156 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHhhhhHHHHh
Confidence 33333333333333333333
No 39
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=87.44 E-value=2.5 Score=37.51 Aligned_cols=14 Identities=7% Similarity=0.375 Sum_probs=6.3
Q ss_pred HHHHHHhhHHhHHH
Q 026425 149 LTQRIQNLNDKVEK 162 (238)
Q Consensus 149 LsqRI~~vd~kld~ 162 (238)
|.-|||+++..+|+
T Consensus 84 lE~kvD~lee~fdd 97 (189)
T TIGR02132 84 LEEKVDLIEEFFDD 97 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 40
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=87.38 E-value=9.8 Score=39.78 Aligned_cols=35 Identities=11% Similarity=0.301 Sum_probs=25.3
Q ss_pred HHHHHHHHhhHHHHHH-HHHHHHHHHHHHHhhHHhH
Q 026425 126 TAVSNLNKHLESVTEA-LTVAKKHLTQRIQNLNDKV 160 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~s-L~~tKkhLsqRI~~vd~kl 160 (238)
..++++.+|++++-.. ...++.|+...|++.+..+
T Consensus 187 ~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l 222 (806)
T PF05478_consen 187 TFLNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL 222 (806)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 3445667788887777 7788888888888777653
No 41
>PRK04406 hypothetical protein; Provisional
Probab=87.23 E-value=4.7 Score=30.62 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
.+...+.+||..|..++--|.......-+.|++-+..+......++.+.+-+..
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355568889999999988888888888888877776666655555555443333
No 42
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=87.21 E-value=9 Score=28.90 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=26.8
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
+..++.+.+++|....=...+-++++++.+|+...-..++.+-+.|..++..+.++
T Consensus 32 ~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333444444444444555555555555555555555544
No 43
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=87.15 E-value=8.3 Score=29.75 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHH----HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKD----IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~----i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
+-.+.+++++|++.=...|.++++.++. ++++...=...+.++..|++.++..++.|..|+..
T Consensus 16 ~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 16 ILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777766666666665543 34555555566777899999999999999998863
No 44
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=87.00 E-value=7.5 Score=39.50 Aligned_cols=90 Identities=12% Similarity=0.279 Sum_probs=65.4
Q ss_pred cchhHHH----hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhH
Q 026425 113 FADLMYV----TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNL 188 (238)
Q Consensus 113 ~sDlMyV----Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv 188 (238)
++++.|. +||||..-++ +.+=..+..+-+.=..+..+|+++...++++++....+++.+...+.+...+-.++
T Consensus 6 L~~~~~~nt~~aRr~LR~~iE---~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~ 82 (618)
T PF06419_consen 6 LSEFGFENTLEARRNLRSDIE---KRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA 82 (618)
T ss_pred hcccccCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 8999987654 45555666666666778889999999999999999999999988887777766666
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHH
Q 026425 189 KDLQSMIYCLDGKIDSLADKQDIT 212 (238)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie~kQd~t 212 (238)
..+ -.+...++.||...
T Consensus 83 ~~L-------~~~~~~~~~k~~ll 99 (618)
T PF06419_consen 83 SEL-------REQKEELELKKKLL 99 (618)
T ss_pred HHH-------HHHHHHHHHHHHHH
Confidence 666 44555555555443
No 45
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=86.69 E-value=18 Score=30.44 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHH-hhhcC
Q 026425 55 TDAIKDQLNRLKFEC-QRASS 74 (238)
Q Consensus 55 ~d~L~aQV~~L~~El-~las~ 74 (238)
......+++.+.+++ .|+.+
T Consensus 93 i~~~~~~i~~~a~~~~~la~n 113 (262)
T smart00283 93 IGEIVSVIDDIADQTNLLALN 113 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666776 55543
No 46
>PRK09039 hypothetical protein; Validated
Probab=86.66 E-value=12 Score=35.42 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (238)
.......+..|+..+.++|++.+..+....-+|..++..++.++.-+..++..+...|.
T Consensus 107 ~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 107 LAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334477888888888888888887776666655555555555555444444444443
No 47
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=86.43 E-value=14 Score=32.81 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=48.2
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYL 218 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 218 (238)
..||+.|..++.+...+.........++...+..+..|+......+..+|.|+..++..-.....-+.-
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 445666666666666777777777778888888888888888888888888887777655544444433
No 48
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=86.31 E-value=3.5 Score=31.71 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=9.4
Q ss_pred hhhhHHHHHHHHHhhhhhhhhh
Q 026425 184 VEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
+..-++.+-..+..|+.++..|
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 49
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=86.20 E-value=20 Score=30.55 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=21.3
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 026425 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKH 148 (238)
Q Consensus 118 yVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkh 148 (238)
+|||..+.+..-..-..+.++-..+....++
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~ 73 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKS 73 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888877766666666666666555444
No 50
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=86.19 E-value=4 Score=41.76 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhHHhHHHH
Q 026425 145 AKKHLTQRIQNLNDKVEKQ 163 (238)
Q Consensus 145 tKkhLsqRI~~vd~kld~~ 163 (238)
+.+.+++|+..++.++.+.
T Consensus 379 ~~~~~~~~l~~le~~l~~~ 397 (656)
T PRK06975 379 SVHQLDSQFAQLDGKLADA 397 (656)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 51
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.99 E-value=9.8 Score=38.10 Aligned_cols=79 Identities=15% Similarity=0.295 Sum_probs=48.1
Q ss_pred heeeeeeeccccchhHHHhH--------------------hhHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHhhHH
Q 026425 102 GYGYMWWKGLSFADLMYVTR--------------------KSMATAVSNLNKHLESVTEALTV---AKKHLTQRIQNLND 158 (238)
Q Consensus 102 GYgYmwWKGws~sDlMyVTk--------------------r~ms~Av~sv~kqLe~Vs~sL~~---tKkhLsqRI~~vd~ 158 (238)
||==|-=+|..|+.+=.-.+ +.....+..+.++++++|+.|.. ||+...+....+.+
T Consensus 238 gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~ 317 (569)
T PRK04778 238 GYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPD 317 (569)
T ss_pred HHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44446666777876532222 23345566777888888887763 66666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q 026425 159 KVEKQNEISKDIRKNVEEACDD 180 (238)
Q Consensus 159 kld~~~eis~~i~~eV~~v~~d 180 (238)
.++...+-...++.++..++..
T Consensus 318 ~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 318 FLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 6666666666665555555544
No 52
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=85.85 E-value=8.5 Score=26.71 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=31.8
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
+.|+.+..++.+.+++...|.++|.+=..-+.+|..+++.....+..=-.+|..
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666665555555444444443
No 53
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=85.75 E-value=12 Score=36.01 Aligned_cols=98 Identities=13% Similarity=0.219 Sum_probs=68.6
Q ss_pred ecccc-chhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 026425 109 KGLSF-ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN 187 (238)
Q Consensus 109 KGws~-sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d 187 (238)
|-|.+ -|=|---|+|...++..++-+|+.++..+..+-.++.+|=..+...|.-...--+...++..++++.-.+...+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44544 36788899999999999999999999999999999998888888777655444444555666666655555555
Q ss_pred HHH----HHHHHHhhhhhhhhhh
Q 026425 188 LKD----LQSMIYCLDGKIDSLA 206 (238)
Q Consensus 188 v~~----v~~~V~~Le~Ki~~ie 206 (238)
|.+ +.+++..+|.+=.+||
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 4444445554444444
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.48 E-value=24 Score=35.33 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHH
Q 026425 31 LPELLRELQSLVERLSKSGEQDNFTDAIKDQLNRLKFEC 69 (238)
Q Consensus 31 Lsd~~g~lq~~~k~~~k~g~~~~~~d~L~aQV~~L~~El 69 (238)
+|+=+.+|+.-.+.+.++|=.=+| ..+..+++.|+++|
T Consensus 228 ~P~ql~el~~gy~~m~~~gy~~~~-~~i~~~i~~l~~~i 265 (569)
T PRK04778 228 LPDQLQELKAGYRELVEEGYHLDH-LDIEKEIQDLKEQI 265 (569)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCC-CChHHHHHHHHHHH
Confidence 344444444444444433221133 34677888888888
No 55
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.46 E-value=8.3 Score=31.78 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=53.4
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (238)
.+|..+++-+-.+++..|.+.+.... ..+|...++.+..+.+..-++-+.--++|.+++.|+..+
T Consensus 44 ~~r~~l~~Eiv~l~~~~e~~~~~~~~-~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 44 AERDELREEIVKLMEENEELRALKKE-VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 38999999999999998888555444 458999999999999999999999889998888666543
No 56
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=85.35 E-value=18 Score=31.28 Aligned_cols=89 Identities=17% Similarity=0.339 Sum_probs=54.4
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh----hhHHHhhhhHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEAL-TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC----DDLFKVEHNLKDLQSM 194 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL-~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~----~d~~~i~~dv~~v~~~ 194 (238)
|-.++.+-++.....-+.+.+.+ ..+|..|.+.|..|-..+.+..+-++.+.+++...+ .|...+..|+..++..
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~ 157 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSI 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555555554444444444444 457888888888888777666666655555555444 4556677777777777
Q ss_pred HHhhhhhhhhhhhh
Q 026425 195 IYCLDGKIDSLADK 208 (238)
Q Consensus 195 V~~Le~Ki~~ie~k 208 (238)
+.+-.+.|..++..
T Consensus 158 l~~~~g~I~~L~~~ 171 (184)
T PF05791_consen 158 LAGENGDIPQLQKQ 171 (184)
T ss_dssp HHHTT--HHHHHHH
T ss_pred HhcccCCHHHHHHH
Confidence 77777777766543
No 57
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=85.21 E-value=21 Score=29.78 Aligned_cols=94 Identities=15% Similarity=0.248 Sum_probs=63.2
Q ss_pred HhhhhheeeeeeeccccchhHHHhH-hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH
Q 026425 97 TLGALGYGYMWWKGLSFADLMYVTR-KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE 175 (238)
Q Consensus 97 ~vGavGYgYmwWKGws~sDlMyVTk-r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~ 175 (238)
++++++|.+ |. .++.+-.+++..+++++-..=..-+.+..++-+..+..|+++.+.-..+.+...
T Consensus 11 llss~sfaA--------------~~~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~ 76 (126)
T PF09403_consen 11 LLSSISFAA--------------TATASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIE 76 (126)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456777766 44 667777888888888888888888899999999999999999999999998877
Q ss_pred HhhhhH--HHhhhh----HHHHHHHHHhhhhhhhh
Q 026425 176 EACDDL--FKVEHN----LKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 176 ~v~~d~--~~i~~d----v~~v~~~V~~Le~Ki~~ 204 (238)
.+..+- .-++++ +.........||.+|..
T Consensus 77 kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~ 111 (126)
T PF09403_consen 77 KLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAE 111 (126)
T ss_dssp HHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776552 223333 44455666666666654
No 58
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.13 E-value=10 Score=36.44 Aligned_cols=87 Identities=16% Similarity=0.289 Sum_probs=57.6
Q ss_pred ccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------HHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 026425 112 SFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNL-------NDKVEKQNEISKDIRKNVEEACDDLFKV 184 (238)
Q Consensus 112 s~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~v-------d~kld~~~eis~~i~~eV~~v~~d~~~i 184 (238)
+++..+-.||.-|..--+.+++.||.+.+ =-+||.++++.+ -++|.+..+--++...-|++....+.+|
T Consensus 231 ~I~~~~~~~~~~L~kl~~~i~~~lekI~s----REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQDISKTLEKIES----REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 57888889999999988888887776554 445555555444 3444555555555556677777777777
Q ss_pred hhhHHHHHHHHHhhhhhh
Q 026425 185 EHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki 202 (238)
..+++.+++-+..=+.+|
T Consensus 307 seeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 307 SEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 777777776655444444
No 59
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=84.83 E-value=15 Score=27.83 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=4.6
Q ss_pred HHHHHHHHHhh
Q 026425 214 IGMYLLCNFVD 224 (238)
Q Consensus 214 ~GV~~Lc~f~~ 224 (238)
..+..+|.|+.
T Consensus 89 ~~l~~~~~~~e 99 (127)
T smart00502 89 EKLSHAINFTE 99 (127)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 60
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.82 E-value=16 Score=39.99 Aligned_cols=92 Identities=11% Similarity=0.171 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 026425 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (238)
..++.-..+...-+...+++...+.++-+..+-.+.++++++.-.+.+..+..|++..+..+..++.++.+.+..-+-.-
T Consensus 292 ~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k 371 (1074)
T KOG0250|consen 292 KKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLK 371 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555566666666666666677777888888888888889999999999999999988888888888
Q ss_pred HHHHHHHHHhhc
Q 026425 214 IGMYLLCNFVDG 225 (238)
Q Consensus 214 ~GV~~Lc~f~~~ 225 (238)
.-+.+||.-++.
T Consensus 372 ~~~d~l~k~I~~ 383 (1074)
T KOG0250|consen 372 KEVDRLEKQIAD 383 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 888888887653
No 61
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.82 E-value=13 Score=33.34 Aligned_cols=87 Identities=15% Similarity=0.225 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (238)
.+....+.++++|......+..+| .+++.++..++....=....+++++.+..+...+..+.+..+.-...|+..|
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~----~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQK----QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666665555543 3445555555555555555666666666666666666666666666666666
Q ss_pred hhhhhhhHHHH
Q 026425 203 DSLADKQDITN 213 (238)
Q Consensus 203 ~~ie~kQd~tn 213 (238)
..+..+=.-..
T Consensus 97 ~~l~~~i~~l~ 107 (264)
T PF06008_consen 97 QNLQDNIQELI 107 (264)
T ss_pred HHHHHHHHHHH
Confidence 66655443333
No 62
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=84.49 E-value=5.5 Score=34.65 Aligned_cols=62 Identities=10% Similarity=0.267 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
.-..-|..+.+.|..++++..+.-+...++|-- =.|=+=+.+++.+...+..||.+|..+|.
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs--Yqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVS--YQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666777777767777888744 34677789999999999999999999764
No 63
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=83.93 E-value=4 Score=31.97 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (238)
+..|.+.|..|++.+...+++..+-...+++++..++..+.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455568888888888888888877777777777776655544
No 64
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.62 E-value=5.8 Score=34.20 Aligned_cols=96 Identities=20% Similarity=0.326 Sum_probs=45.0
Q ss_pred ccchhHHHhHhhHHH---HHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 026425 112 SFADLMYVTRKSMAT---AVSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (238)
Q Consensus 112 s~sDlMyVTkr~ms~---Av~sv~kqLe~Vs~sL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (238)
++.+..+..+..|+. .+..+..+|-..+..+..-++.+.. +|..+...+....+=.+...+++.+....++.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777776664 4677888888888888777766655 5555555565555566666788888888999999
Q ss_pred hhHHHHHHHHHhhhhhhhhhhh
Q 026425 186 HNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
+++..++--...+|.|+..++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998873
No 65
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=82.92 E-value=20 Score=31.36 Aligned_cols=85 Identities=14% Similarity=0.213 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH-HHHh-hhhHHHhhhhHHHHHHHHHhh
Q 026425 122 KSMATAVSNLNKHLESVTEAL-TVAKKHLTQRIQNLNDKVEKQNEISKDIRKN-VEEA-CDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL-~~tKkhLsqRI~~vd~kld~~~eis~~i~~e-V~~v-~~d~~~i~~dv~~v~~~V~~L 198 (238)
.+| .+|++-+|++++.+... ...+.-++.-++.+...+.+...-...+-.+ |..+ ..+...+.+.+.....-.+.|
T Consensus 19 ~sl-s~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El 97 (165)
T PF09602_consen 19 QSL-SLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNEL 97 (165)
T ss_pred HHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 46888889988876544 3334456666666666666555554444444 5555 234444555566666666666
Q ss_pred hhhhhhhhh
Q 026425 199 DGKIDSLAD 207 (238)
Q Consensus 199 e~Ki~~ie~ 207 (238)
..+|..+--
T Consensus 98 ~~~i~el~~ 106 (165)
T PF09602_consen 98 SAKIQELLL 106 (165)
T ss_pred HHHHHHHHc
Confidence 666655543
No 66
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=82.89 E-value=8.3 Score=31.29 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhHHH-hhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 164 NEISKDIRKNVEEACDDLFK-VEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~-i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
.++.+.+.+.|..+-.++.- ...||+.++..|..|+.+|..++.
T Consensus 73 ~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 73 DKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677777666544432 348999999999999999988764
No 67
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=82.85 E-value=5 Score=29.54 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=28.8
Q ss_pred ehhhhhHhhhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHH
Q 026425 91 LMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTV 144 (238)
Q Consensus 91 ~ivpaA~vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~ 144 (238)
+++=|++-+++||.|-==+|- =||+.+.+....+..++++.++....
T Consensus 5 ~l~Ga~~Ga~~glL~aP~sG~-------e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPKSGK-------ETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHhCCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344445666666555554 37777888777777777666655544
No 68
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=82.76 E-value=4.9 Score=38.22 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (238)
..++.|..+-++||.|+.=--+--..+..|++.|..+.|+ -..-+--+++..++++++..++.|+..+-.
T Consensus 45 ~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~-~~~~~~~~~~~~~lr~~l~~~~~em~~L~~ 114 (310)
T KOG1161|consen 45 DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA-LSLEPPSAEEMKELREELVDFHGEMVLLEN 114 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999874 111122235566777777777777766643
No 69
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=82.44 E-value=6.3 Score=29.07 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=32.1
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
+..||..|..|+--+.+......+.|++-+.. |+.++..+..|..||.+++
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~-------I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQ-------IDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc
Confidence 56788888888888877777777777666644 4445555555666666665
No 70
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.43 E-value=43 Score=31.25 Aligned_cols=94 Identities=22% Similarity=0.332 Sum_probs=44.1
Q ss_pred chhHHHhHhhHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHhhHHhHHHHHH----HHHHHHHHHHHhhhhHHHhhh
Q 026425 114 ADLMYVTRKSMATAVSNLNKHLESVTEALTVA---KKHLTQRIQNLNDKVEKQNE----ISKDIRKNVEEACDDLFKVEH 186 (238)
Q Consensus 114 sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~t---KkhLsqRI~~vd~kld~~~e----is~~i~~eV~~v~~d~~~i~~ 186 (238)
-+-+--....|.+-.+.+.++++.+.+.+... +..|..++.++....++... --...+.++.+...+++..+.
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~ 230 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKK 230 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666667777666666554443 44455555555554333211 112233333333334443333
Q ss_pred hHHHHHHHHHhhhhhhhhhhh
Q 026425 187 NLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
++..++.-+..++.++..++.
T Consensus 231 ~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 71
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=82.37 E-value=6.2 Score=29.96 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=41.0
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
+++-+.+...-++..+......-....+.+..++++.=.+||=. +++|....+.=+.+ .+..+..||
T Consensus 4 ~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~~~L~~-------~r~kl~~LE 70 (79)
T PF04380_consen 4 PNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQKAVLAR-------TREKLEALE 70 (79)
T ss_pred chhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 44555555555666665555555566666666666666665533 34444444433333 444445556
Q ss_pred hhhhhhhh
Q 026425 200 GKIDSLAD 207 (238)
Q Consensus 200 ~Ki~~ie~ 207 (238)
.||..+|.
T Consensus 71 arl~~LE~ 78 (79)
T PF04380_consen 71 ARLAALEA 78 (79)
T ss_pred HHHHHHhc
Confidence 66666654
No 72
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.93 E-value=9.2 Score=35.09 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=34.5
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
+|+.+|.+++....-.+.+++++..++..++.+..++..++..+..|+..+..++.-
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~e 67 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESE 67 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666666666666666666666555555555433
No 73
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=81.87 E-value=46 Score=32.43 Aligned_cols=53 Identities=11% Similarity=0.235 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 139 TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 139 s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
++.+...=.+++.-.+.+....+++.+...++...+.++...+.++-...+.+
T Consensus 272 s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~ 324 (553)
T PRK15048 272 SDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQA 324 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555544444444444444433333
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.67 E-value=30 Score=28.97 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=52.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
+++..=-|+|++=...+..-=+.|+.|++.+...+|+..+-....++.+.+.. +-....++++..|..||..++..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~----~~~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE----KRKSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHhHHHHHhhHHHHHHHHHHH
Confidence 44555566677766666666677777777777777766444444444333222 12223446777777777777766
Q ss_pred hhhhHHHHHHHHHH
Q 026425 206 ADKQDITNIGMYLL 219 (238)
Q Consensus 206 e~kQd~tn~GV~~L 219 (238)
+.+=.-|+.-+...
T Consensus 93 e~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 93 EKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555554433
No 75
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.94 E-value=31 Score=37.55 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=12.1
Q ss_pred hhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 177 ACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 177 v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
.+..+..+..++...+.....|+..+..++.
T Consensus 868 ~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~ 898 (1163)
T COG1196 868 LEAEKEELEDELKELEEEKEELEEELRELES 898 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444333
No 76
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=80.87 E-value=14 Score=30.26 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 026425 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (238)
Q Consensus 137 ~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (238)
++...|..+|.+|.+-=+.|.+..++..++-..+.++-..+..
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~ 71 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQ 71 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666667777777776666666555543
No 77
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.28 E-value=43 Score=31.59 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=50.0
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHhhHHhHHHH----HHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALTV---AKKHLTQRIQNLNDKVEKQ----NEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~~---tKkhLsqRI~~vd~kld~~----~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
-..-.|.+--+.+.++++.+.+.+.. -+..|...+..+..-.++. .+.-..+++++.+...+++....++..+
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~ 230 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL 230 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666655544333 2333444444443333332 1233344555555555555566666666
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHH
Q 026425 192 QSMIYCLDGKIDSLADKQDITNIGMYL 218 (238)
Q Consensus 192 ~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 218 (238)
+.-+..++.+|.....+..-.+.=|..
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555544444443333
No 78
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.13 E-value=38 Score=36.87 Aligned_cols=68 Identities=21% Similarity=0.400 Sum_probs=42.5
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026425 154 QNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNF 222 (238)
Q Consensus 154 ~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f 222 (238)
+.+..+++.+.+--...++++.++..++..+...+..+..-++.++.++++++..+.. ..|+...-.+
T Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~ 509 (1163)
T COG1196 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA-SQGVRAVLEA 509 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHH
Confidence 3333344444444455555666666666677777777777777777788888877776 5555544443
No 79
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=80.10 E-value=9.9 Score=29.32 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh---hhhHHHHHHHHHhhhhhhhhh
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV---EHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i---~~dv~~v~~~V~~Le~Ki~~i 205 (238)
+..++++|..-|+.+.+.|++..+.... +..+=++| ..++..=++.|..++.+|..|
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~i-------ve~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRI-------VEKNPSKFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555555333332 22222222 234444445555555555544
No 80
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=80.07 E-value=15 Score=36.32 Aligned_cols=81 Identities=21% Similarity=0.389 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH------------HhhhhHHHhhhhHHHHHHHHH--------hh
Q 026425 139 TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE------------EACDDLFKVEHNLKDLQSMIY--------CL 198 (238)
Q Consensus 139 s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~------------~v~~d~~~i~~dv~~v~~~V~--------~L 198 (238)
..-+..-|++|+.+-++|-.++|+.+.+.+.++++|. .+..|++....+++.+..-+. .|
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4457788999999999999999999999999988764 344555555555555555543 35
Q ss_pred hhhhhhhhhhhHHHHHHHHHH
Q 026425 199 DGKIDSLADKQDITNIGMYLL 219 (238)
Q Consensus 199 e~Ki~~ie~kQd~tn~GV~~L 219 (238)
|.-|+.|..-|+|=+.=-.++
T Consensus 281 E~EL~~V~eEQqfL~~QedL~ 301 (424)
T PF03915_consen 281 ESELQKVCEEQQFLKLQEDLL 301 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777776654443
No 81
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.94 E-value=35 Score=33.86 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=68.3
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLT-------QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLs-------qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
-|+-+-++....-++|..|...|++-+++|. .+.+.++..+.|.+..-.++..+..+-+..++..+-+=..+.
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677888888888999999999999988887 566777777888888877887777777777777777777777
Q ss_pred HHHHhhhhhhhhhhhh
Q 026425 193 SMIYCLDGKIDSLADK 208 (238)
Q Consensus 193 ~~V~~Le~Ki~~ie~k 208 (238)
..+..+|..+.+..++
T Consensus 238 ~~Ias~e~~aA~~re~ 253 (420)
T COG4942 238 NEIASAEAAAAKAREA 253 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777555544433
No 82
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=79.77 E-value=48 Score=34.44 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=4.4
Q ss_pred HHHhhhhhhhhh
Q 026425 194 MIYCLDGKIDSL 205 (238)
Q Consensus 194 ~V~~Le~Ki~~i 205 (238)
-+..++.++..+
T Consensus 916 ~l~~l~~~~~~~ 927 (1179)
T TIGR02168 916 ELEELREKLAQL 927 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 83
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.73 E-value=23 Score=37.04 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Q 026425 186 HNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (238)
++.+.+++.-+.|..|++++.++|..-..-+..+-+
T Consensus 586 e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 586 EERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555666666666555555554433
No 84
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.49 E-value=43 Score=29.43 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 026425 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (238)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (238)
.....++..|++.+..+++++.+-.+.-++++.+.+..+..-..++.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777777777777777776666554
No 85
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=79.37 E-value=11 Score=28.95 Aligned_cols=21 Identities=10% Similarity=0.313 Sum_probs=9.2
Q ss_pred hHHHHHHHHHhhhhhhhhhhh
Q 026425 187 NLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
++..+...+.++...++.++.
T Consensus 36 ~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 36 DVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 86
>PRK00295 hypothetical protein; Provisional
Probab=79.26 E-value=11 Score=27.90 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=30.9
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
+..||..|..|+--|.......-+.|+.-+..+......++.+..-+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777766665555555444444443333
No 87
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=79.12 E-value=49 Score=29.85 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=62.3
Q ss_pred chhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 026425 114 ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (238)
Q Consensus 114 sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (238)
+++|=....++.+ .+..++.|..++++.++++ +-++.++.+...|+..+.+=+.--+..+.--...+++-.|-+++|+
T Consensus 102 ~~l~esl~~~i~~-~~~aa~~i~~~~~~~~~~~-~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fke 179 (202)
T TIGR03513 102 ATLMQSLGNGINN-FEGAAKTLAPMTDSYAQQK-KYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKE 179 (202)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445455555555 6777888888888888887 7788899999888888777554444333333445556677777777
Q ss_pred HHHhhhhhhhhh
Q 026425 194 MIYCLDGKIDSL 205 (238)
Q Consensus 194 ~V~~Le~Ki~~i 205 (238)
=++.|-..|.++
T Consensus 180 Q~~kLa~NL~sL 191 (202)
T TIGR03513 180 EMEKMAANLTSL 191 (202)
T ss_pred HHHHHHHHHHHH
Confidence 777777777655
No 88
>PRK02119 hypothetical protein; Provisional
Probab=79.10 E-value=14 Score=27.82 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=31.8
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (238)
.+..||..|..|+--|.......-+.|++-+..+......+..+.+.+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888777777777777777766555555444444433333
No 89
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=79.10 E-value=11 Score=35.96 Aligned_cols=23 Identities=13% Similarity=0.340 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhh
Q 026425 184 VEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
+.+|++.--.+...-+.+|.+++
T Consensus 145 l~~Dv~~Al~lL~~AD~rLa~~~ 167 (372)
T PF04375_consen 145 LEGDVQTALALLQSADQRLAELD 167 (372)
T ss_pred HcCCHHHHHHHHHHHHHHHHhcC
Confidence 44566666666666666666665
No 90
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=78.98 E-value=40 Score=28.77 Aligned_cols=79 Identities=9% Similarity=0.256 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH--------HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK--------QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMI 195 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~--------~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V 195 (238)
+++..+.+-.|.-++...|+..+.-+..|+..++.++.. ..+.....-+.+..++ +.++.++..++..+
T Consensus 18 LtnvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq---~~~rneLtnlnsil 94 (140)
T PF04513_consen 18 LTNVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQ---DTLRNELTNLNSIL 94 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345555555555555555555555444444444444333 1123334444454444 34445555555555
Q ss_pred Hhhhhhhhhh
Q 026425 196 YCLDGKIDSL 205 (238)
Q Consensus 196 ~~Le~Ki~~i 205 (238)
..|-..+.-|
T Consensus 95 ~nL~ssvTNi 104 (140)
T PF04513_consen 95 NNLTSSVTNI 104 (140)
T ss_pred HHHHHHHhhH
Confidence 5555555533
No 91
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.96 E-value=36 Score=31.72 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
+++..++..+.....++...+..+..|+.++.+++.+=
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555556666666555443
No 92
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=78.87 E-value=21 Score=35.40 Aligned_cols=95 Identities=17% Similarity=0.348 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHhhHHHHHH------------HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH------------Hhh
Q 026425 123 SMATAVSNLNKHLESVTEA------------LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE------------EAC 178 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~s------------L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~------------~v~ 178 (238)
.+..-++++-.++.+|.++ +.+.|++|+..-|+|-.|.|+.+.+.+.+|++|. .+.
T Consensus 177 ~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~ 256 (426)
T smart00806 177 EIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQ 256 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444555566666666553 5677999999999999999999999999999874 344
Q ss_pred hhHHHhhhhHHHHHHHHH--------hhhhhhhhhhhhhHHHHHHHH
Q 026425 179 DDLFKVEHNLKDLQSMIY--------CLDGKIDSLADKQDITNIGMY 217 (238)
Q Consensus 179 ~d~~~i~~dv~~v~~~V~--------~Le~Ki~~ie~kQd~tn~GV~ 217 (238)
.|++....|++.++.-+. .+|..|+.|..-|+|-|.==.
T Consensus 257 kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQed 303 (426)
T smart00806 257 KELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQED 303 (426)
T ss_pred HHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443 366777888888887665433
No 93
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=78.55 E-value=36 Score=30.49 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 026425 188 LKDLQSMIY 196 (238)
Q Consensus 188 v~~v~~~V~ 196 (238)
+++++..+.
T Consensus 215 v~~l~~~~~ 223 (291)
T TIGR00996 215 LDNLATLTA 223 (291)
T ss_pred HHHHHHHHH
Confidence 333333333
No 94
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=78.29 E-value=8.6 Score=34.32 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=31.8
Q ss_pred HHHHhhHHhHHHHHHHHHH--HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 151 QRIQNLNDKVEKQNEISKD--IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 151 qRI~~vd~kld~~~eis~~--i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
.||.++....+...++-+. .-+|+-+++..|++++.|+++++.-...|+.+++
T Consensus 139 arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 139 ARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444443332 3366777777777777777777777777776654
No 95
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=78.24 E-value=30 Score=27.02 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhh---hHHHHHHHHHhhhhhhhhhhhh
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEH---NLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~---dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
-|...=+..+.|...+++.......-.+.......+++.-+.+|.. .|..+..+|..||.-..++|.|
T Consensus 25 LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 25 LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666665555555555555555555554444444 6677777777777666666654
No 96
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=78.11 E-value=29 Score=35.35 Aligned_cols=94 Identities=14% Similarity=0.242 Sum_probs=60.5
Q ss_pred ccchhHHHhHhhHHHHH-----------HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh--------HHHHHHHHHHHHH
Q 026425 112 SFADLMYVTRKSMATAV-----------SNLNKHLESVTEALTVAKKHLTQRIQNLNDK--------VEKQNEISKDIRK 172 (238)
Q Consensus 112 s~sDlMyVTkr~ms~Av-----------~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~k--------ld~~~eis~~i~~ 172 (238)
.-++.+.-+-++|+++. ..+.-|+..|+..+.-..+.|..||..+... +++.....+.+..
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777664 3344455555566666667777777766543 5556666667777
Q ss_pred HHHHhhhhHHHhhhhHHHHHHHHH----hhhhhhhhh
Q 026425 173 NVEEACDDLFKVEHNLKDLQSMIY----CLDGKIDSL 205 (238)
Q Consensus 173 eV~~v~~d~~~i~~dv~~v~~~V~----~Le~Ki~~i 205 (238)
...++++.++.+..||.+|..... .++.||+.-
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE 449 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTE 449 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHH
Confidence 777778778877777777766543 445555543
No 97
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.01 E-value=22 Score=36.39 Aligned_cols=58 Identities=21% Similarity=0.394 Sum_probs=30.8
Q ss_pred chhHHHhHhh--HHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 026425 114 ADLMYVTRKS--MATAVSNLNKH---LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (238)
Q Consensus 114 sDlMyVTkr~--ms~Av~sv~kq---Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (238)
+||+.||-|. |.+-+..+-|. |.+....|......|..+++.+...|....+-....+
T Consensus 129 ~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 129 SDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred cceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888664 33333333333 3344445555555566666666666655444444333
No 98
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=77.86 E-value=26 Score=34.79 Aligned_cols=54 Identities=15% Similarity=0.324 Sum_probs=49.9
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
..++..+-.++.+|.++-+.+++-+..-+.||+.+..||.++|+.-..|..|+.
T Consensus 13 ~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~ 66 (508)
T PF04129_consen 13 SENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLK 66 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888999999999999999999999999999999999999999999988
No 99
>PRK02793 phi X174 lysis protein; Provisional
Probab=77.81 E-value=14 Score=27.68 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.2
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
.+.+||..|..++--|.......-+.|++-+..+......+..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888887777777777777665555544444444
No 100
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=77.62 E-value=20 Score=31.47 Aligned_cols=64 Identities=17% Similarity=0.372 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 137 ~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
||...|+.+-.+|.+.+|.....|++. +++..+++ +-++.+....+.++....-|+..|++.+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~e---I~~L~~~i----~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDE---IKQLEKEI----QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777776666555444421 12222222 23455666777777778888888876553
No 101
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.46 E-value=16 Score=28.27 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 026425 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (238)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (238)
...+|.+..+++.+-.+ .++++++|.
T Consensus 35 d~~~r~l~~~~e~lr~~---rN~~sk~I~ 60 (108)
T PF02403_consen 35 DQERRELQQELEELRAE---RNELSKEIG 60 (108)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHH
Confidence 34455555565555544 344444444
No 102
>PRK04325 hypothetical protein; Provisional
Probab=77.42 E-value=16 Score=27.47 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
.+..||..|..|+--|.......-+.|++-+..+......+..+
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888887777777777777777665555544444444
No 103
>PRK00846 hypothetical protein; Provisional
Probab=77.41 E-value=20 Score=27.65 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
-..+.+||+.|..++--|...+....+.|+.-+..+.. ++..+.-|-.|+..++
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~-------L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGAR-------NAELIRHLLEDLGKVR 61 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 35688999999999888888888888888776655555 4444555555655555
No 104
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.90 E-value=29 Score=38.06 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=39.5
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHH-HHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNV-EEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV-~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
|...+|+..-...|.+......++++. ..+..+++++..+++.|..-|+.||.-+.++..++
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666665 56666666666666666666666666666655443
No 105
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=76.85 E-value=16 Score=26.69 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 026425 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (238)
...++++.+.|+++...-...|+. .|..+...|++..++.+++.-||..+
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~~---~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRKS---LIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHhhccChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666777777766444344444 45566678899999999998887665
No 106
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=76.74 E-value=46 Score=34.90 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
+..|+..+-.+ --.....++.++..|+..+-...++|.+-.+..+++...+++.-+.+.+-++.+.+.=+.|..|++
T Consensus 541 L~~a~~vlree---Yi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 541 LSQATKVLREE---YIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444432 113356789999999999999999999999999999999998888888888888888888888888
Q ss_pred hh
Q 026425 204 SL 205 (238)
Q Consensus 204 ~i 205 (238)
.+
T Consensus 618 ~v 619 (717)
T PF10168_consen 618 RV 619 (717)
T ss_pred HH
Confidence 66
No 107
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=76.11 E-value=21 Score=35.86 Aligned_cols=62 Identities=16% Similarity=0.331 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
..+|+.|..--+++..+++.++.++.+..+....++++=..++..+.++..++..+++.|+.
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek 432 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK 432 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777788888888888888888888888888888888888888888888887777653
No 108
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.05 E-value=18 Score=27.75 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
...|.+||..|..++--|......+-+.|++-+-.+++...-++.+-..+..+
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34688999999999999988888888888888766666655555554444333
No 109
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=76.01 E-value=7.7 Score=28.27 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=14.8
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhH
Q 026425 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNL 188 (238)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv 188 (238)
|+.+..++....-.....|++..+++..++.+...+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333333333444444444444444443
No 110
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=75.37 E-value=29 Score=40.39 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=64.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
+.-+-..+.+..+.+...|+.+.+|++.....++....-.....+--..++.+++....|++..+..+..||.|+.+.+
T Consensus 1363 ~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~ 1441 (1930)
T KOG0161|consen 1363 KKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFE 1441 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555568888999999999999999998888888888778888889999999999999999999998887665
No 111
>PRK00736 hypothetical protein; Provisional
Probab=75.30 E-value=19 Score=26.71 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=27.8
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
+..||..|..|+--|.......-+.|+.-+..+..+...+..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888877777777777777766665554444444444
No 112
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=75.28 E-value=5.4 Score=38.15 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=35.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 127 Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
-+..+-..|+.++.+++ -|+..|...+..+....-....+.-+|.-++.|++..+-.|.+++..|..||.....
T Consensus 85 tV~~lq~Sl~~lsssVs----~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s~ 158 (326)
T PF04582_consen 85 TVTSLQSSLSSLSSSVS----SLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSSS 158 (326)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhhhHH----hhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCCC
Confidence 33344444444444443 356667777777777777888888899999999999999999999999999987653
No 113
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.26 E-value=56 Score=28.52 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=23.3
Q ss_pred cccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026425 111 LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQ 151 (238)
Q Consensus 111 ws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsq 151 (238)
||||.--.. .+.+.++.+.+.++.+...+...+..|..
T Consensus 57 WsFps~~~~---~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 57 WSFPSQAKQ---KRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred EecChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567766544 44556666666666666666666555543
No 114
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=75.01 E-value=9.7 Score=33.27 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhHH---hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 143 TVAKKHLTQRIQNLND---KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 143 ~~tKkhLsqRI~~vd~---kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
-.+-.|+++||+++.. +|.++.+.-.+|.+.|.+..++++.|++++..|
T Consensus 110 l~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 110 LPTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555556655554 455555555666666666666666666655543
No 115
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=74.02 E-value=34 Score=25.54 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
.|.+.+.-|..|+|.++.|+.......+.+..|=...-.-+..-..++..++.-++.|...+++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677778888888888888888888887777655555555566667777777777777766543
No 116
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=73.90 E-value=19 Score=31.67 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=27.5
Q ss_pred HHHHhhHHHHH----HHHHHHHHHHHHHHhhHHhHHHHHHH---HHHHHHHHHHhhhhHHHhhh
Q 026425 130 NLNKHLESVTE----ALTVAKKHLTQRIQNLNDKVEKQNEI---SKDIRKNVEEACDDLFKVEH 186 (238)
Q Consensus 130 sv~kqLe~Vs~----sL~~tKkhLsqRI~~vd~kld~~~ei---s~~i~~eV~~v~~d~~~i~~ 186 (238)
.|-+.|+.+.. .+..++++|...|+.+..+++...++ ++.++++.+.+..+|++|..
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333 33455666666676666665544443 34455666666666665544
No 117
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.75 E-value=45 Score=33.85 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=12.5
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
+.+++.++.....+++.++.-+..++.++.+
T Consensus 437 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 437 LFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444433
No 118
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=73.71 E-value=14 Score=28.86 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 026425 56 DAIKDQLNRLKFEC 69 (238)
Q Consensus 56 d~L~aQV~~L~~El 69 (238)
..|+.|.+.|..++
T Consensus 16 ~~l~~~~~~l~~~~ 29 (105)
T cd00632 16 QAYIVQRQKVEAQL 29 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555444
No 119
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=73.63 E-value=3.6 Score=32.37 Aligned_cols=16 Identities=38% Similarity=0.808 Sum_probs=11.5
Q ss_pred hHhhhhheeeeeeecc
Q 026425 96 ATLGALGYGYMWWKGL 111 (238)
Q Consensus 96 A~vGavGYgYmwWKGw 111 (238)
+++.++=++|.|||-|
T Consensus 11 ~~v~~~i~~y~~~k~~ 26 (87)
T PF10883_consen 11 GAVVALILAYLWWKVK 26 (87)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666789999976
No 120
>PRK03918 chromosome segregation protein; Provisional
Probab=73.20 E-value=64 Score=33.24 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=5.2
Q ss_pred HHHHhhHHhHHHH
Q 026425 151 QRIQNLNDKVEKQ 163 (238)
Q Consensus 151 qRI~~vd~kld~~ 163 (238)
.+|+.+..++++.
T Consensus 640 ~~i~~l~~~~~~l 652 (880)
T PRK03918 640 KRLEELRKELEEL 652 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444333333
No 121
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=73.14 E-value=46 Score=30.08 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=62.9
Q ss_pred ccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhhHHhHHHHHHHHHH--HHHHHHHhhhhHHHhhh
Q 026425 112 SFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKH---LTQRIQNLNDKVEKQNEISKD--IRKNVEEACDDLFKVEH 186 (238)
Q Consensus 112 s~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkh---LsqRI~~vd~kld~~~eis~~--i~~eV~~v~~d~~~i~~ 186 (238)
.|....---+.++.+-+....++++++.+.+...|+. |.++|..+..+++....-... .+..|...-++.+. .+
T Consensus 85 ~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~s 163 (225)
T COG1842 85 DLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SS 163 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hh
Confidence 3444444567789999999999999888888777764 567888888887766544333 33556666665555 44
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHHH
Q 026425 187 NLKDLQSMIYCLDGKIDSLADKQDIT 212 (238)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (238)
.+..+ .-++.|++++|..=+..
T Consensus 164 a~~~f----er~e~kiee~ea~a~~~ 185 (225)
T COG1842 164 AMAAF----ERMEEKIEEREARAEAA 185 (225)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHh
Confidence 44444 34477777777654443
No 122
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=73.02 E-value=14 Score=31.17 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=8.2
Q ss_pred Hhhhhheeeeeeec
Q 026425 97 TLGALGYGYMWWKG 110 (238)
Q Consensus 97 ~vGavGYgYmwWKG 110 (238)
+++++|-+|+||..
T Consensus 8 ~~a~~~~~~~~~~~ 21 (135)
T TIGR03495 8 GLLVAGLGWQSQRL 21 (135)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445556777775
No 123
>COG5283 Phage-related tail protein [Function unknown]
Probab=73.01 E-value=47 Score=36.96 Aligned_cols=109 Identities=12% Similarity=0.213 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (238)
|-+++...++--....+.+..||+-|+ .|.+.+-+.+++++..-+..++|+.|+-+-+...+.+.+.+..-....|.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444445555555553 58899999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHH-------HHHHHHHHHHhhcccccccc
Q 026425 201 KIDSLADKQDIT-------NIGMYLLCNFVDGKKGRTTE 232 (238)
Q Consensus 201 Ki~~ie~kQd~t-------n~GV~~Lc~f~~~~~~~~p~ 232 (238)
++.++...++.+ -.++-.+-.-+......||+
T Consensus 107 ~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maa 145 (1213)
T COG5283 107 KLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAA 145 (1213)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 999999988876 34555554445555555554
No 124
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=72.88 E-value=69 Score=28.48 Aligned_cols=79 Identities=13% Similarity=0.262 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVA---KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~t---KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
+.|.+-...++.+|..+..+-..+ ..++..||..|..++.+..-=...-...|..+...+..+..++...+.....+
T Consensus 144 ~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444333222 24444445555555444433333333444444444444444444444433333
Q ss_pred hh
Q 026425 199 DG 200 (238)
Q Consensus 199 e~ 200 (238)
..
T Consensus 224 ~~ 225 (237)
T PF00261_consen 224 QE 225 (237)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 125
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=72.36 E-value=58 Score=27.45 Aligned_cols=97 Identities=16% Similarity=0.275 Sum_probs=66.8
Q ss_pred ccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH---HHHH----HHHHHHHH-HHhhhhHHH
Q 026425 112 SFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK---QNEI----SKDIRKNV-EEACDDLFK 183 (238)
Q Consensus 112 s~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~---~~ei----s~~i~~eV-~~v~~d~~~ 183 (238)
-+.|+|.=.-++..+-++.+-..|++++..=..+......=-+.+...+.. ...+ ++..++.. ......+..
T Consensus 22 ~i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~ 101 (146)
T PF08702_consen 22 GIQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIIN 101 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367889889999999999999999998887777766555444444444322 1123 33333333 444455566
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 184 VEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
+-.-+..|+.+++.+..||.++|-+
T Consensus 102 ~~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 102 QPSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888999999999999988754
No 126
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=72.27 E-value=6 Score=40.26 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=56.0
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 026425 119 VTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL-------~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (238)
|-++|=.+|++.++++|..+.+.. ...=.++.+||+++++++|+...=.-.-+.|+-.+ +..+..-..+|
T Consensus 364 AD~kSTQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tld~~Ds~~ 443 (550)
T PF00509_consen 364 ADLKSTQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTLDLHDSNV 443 (550)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhccccchhhhHHHH
Confidence 468999999999999999988754 33345789999999999999877666666665443 33444445566
Q ss_pred HHHHHHHH
Q 026425 189 KDLQSMIY 196 (238)
Q Consensus 189 ~~v~~~V~ 196 (238)
.++++.|+
T Consensus 444 ~~L~ekvk 451 (550)
T PF00509_consen 444 NNLYEKVK 451 (550)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 127
>PHA01750 hypothetical protein
Probab=72.08 E-value=14 Score=28.26 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=23.4
Q ss_pred hhHHHhHhhHHHHHHHHH-HhhHHHHHHHHHHH
Q 026425 115 DLMYVTRKSMATAVSNLN-KHLESVTEALTVAK 146 (238)
Q Consensus 115 DlMyVTkr~ms~Av~sv~-kqLe~Vs~sL~~tK 146 (238)
.+-|--|.++.||+..+- +-|+++-..|+++|
T Consensus 23 qlYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 23 QLYLKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667889999998754 45777777777776
No 128
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.06 E-value=28 Score=32.48 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=4.1
Q ss_pred HHhhHHhHHHH
Q 026425 153 IQNLNDKVEKQ 163 (238)
Q Consensus 153 I~~vd~kld~~ 163 (238)
|++=|.++.+.
T Consensus 33 i~~~ds~l~~~ 43 (265)
T COG3883 33 IQNQDSKLSEL 43 (265)
T ss_pred HHhhHHHHHHH
Confidence 33333333333
No 129
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=71.93 E-value=11 Score=35.99 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=10.5
Q ss_pred HHhhhhHHHHHHHHHhhhhhhh
Q 026425 182 FKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
......+..+.+.+..||+++-
T Consensus 168 ~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 168 KELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444445555555555543
No 130
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=71.70 E-value=23 Score=34.12 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHHHH
Q 026425 135 LESVTEALTVAKKHL 149 (238)
Q Consensus 135 Le~Vs~sL~~tKkhL 149 (238)
|+.+.+.++.-+++|
T Consensus 23 ld~~i~~l~~~i~~l 37 (383)
T PF04100_consen 23 LDELIAKLRKEIREL 37 (383)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 131
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=71.54 E-value=22 Score=26.14 Aligned_cols=15 Identities=7% Similarity=0.527 Sum_probs=9.4
Q ss_pred HHHHHHHhhHHhHHH
Q 026425 148 HLTQRIQNLNDKVEK 162 (238)
Q Consensus 148 hLsqRI~~vd~kld~ 162 (238)
++.+||.+++.++|+
T Consensus 3 ~i~e~l~~ie~~l~~ 17 (71)
T PF10779_consen 3 DIKEKLNRIETKLDN 17 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666665
No 132
>PRK02224 chromosome segregation protein; Provisional
Probab=71.51 E-value=1.2e+02 Score=31.38 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=14.5
Q ss_pred hhHHHHHHHHH-------HHHHHHHHHHhhHHhHHH
Q 026425 134 HLESVTEALTV-------AKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 134 qLe~Vs~sL~~-------tKkhLsqRI~~vd~kld~ 162 (238)
.++.+++.+.. .++.+.++++.+...|++
T Consensus 163 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 163 KLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 445555555555555444
No 133
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=71.32 E-value=62 Score=30.85 Aligned_cols=56 Identities=13% Similarity=0.255 Sum_probs=44.1
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
.++.++|.+++..+.++..-.+.-++-++.+... +...+..|..-|..||.||..+
T Consensus 332 ~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 332 AEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 3778888888888877777777777777777744 7788888999999999998765
No 134
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=71.31 E-value=63 Score=29.26 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=46.6
Q ss_pred hhHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhh-------HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh---HH
Q 026425 122 KSMATAVSNLN--KHLESVTEALTVAKKHLTQRIQNL-------NDKVEKQNEISKDIRKNVEEACDDLFKVEHN---LK 189 (238)
Q Consensus 122 r~ms~Av~sv~--kqLe~Vs~sL~~tKkhLsqRI~~v-------d~kld~~~eis~~i~~eV~~v~~d~~~i~~d---v~ 189 (238)
|.|-+|...++ +.|+..++.|-.|+..|.-=|+.- =+-+|.+..++..+.++...+.....++-.. ..
T Consensus 26 R~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~ 105 (214)
T PRK11166 26 RMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELA 105 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 56777777765 777888888888888776433322 1224444444555555555555544332222 44
Q ss_pred HHHHHHHhhhhhhhhhh
Q 026425 190 DLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie 206 (238)
.++..+......+.++.
T Consensus 106 e~~~L~~~~~~fL~~v~ 122 (214)
T PRK11166 106 DARELVTDTRAFLADVP 122 (214)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 44555544444444443
No 135
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=71.11 E-value=55 Score=35.92 Aligned_cols=91 Identities=15% Similarity=0.300 Sum_probs=61.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
....-++|-++...+..+...+.+++..+..++++..+-.....++..+.+ ..+..+...++.-+..++.+|+.++.
T Consensus 258 l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~---~~~~~~~~~~~~~l~~~~~~L~~i~~ 334 (1201)
T PF12128_consen 258 LQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELR---DELNKELSALNADLARIKSELDEIEQ 334 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888888888888888877777666666665555 33445555666666666777777764
Q ss_pred h-hHHHHHHHHHHHH
Q 026425 208 K-QDITNIGMYLLCN 221 (238)
Q Consensus 208 k-Qd~tn~GV~~Lc~ 221 (238)
+ ..|-+.+|.-+++
T Consensus 335 ~~~~ye~~~i~~~~~ 349 (1201)
T PF12128_consen 335 QKKDYEDADIEQLIA 349 (1201)
T ss_pred HHHHHHHCCHHHHHH
Confidence 4 4555667766655
No 136
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=71.07 E-value=15 Score=33.36 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
..+.||.++|+.+++...+++.+++--..|=..|+
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777788888888887777765555444444
No 137
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=71.00 E-value=44 Score=31.51 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH----HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 138 VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR----KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 138 Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~----~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
.-+-+...+-.|..|-+.|..++++..+....+. ++...++.++.....++...+..+..++..+..++.+
T Consensus 166 ~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~ 240 (312)
T smart00787 166 ELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESK 240 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444445555444444443 3555555555555555555555555555555555444
No 138
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=70.88 E-value=34 Score=28.30 Aligned_cols=54 Identities=9% Similarity=0.195 Sum_probs=34.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHH-------hHHHHHHHHHHHHHHHHHhhhhHH
Q 026425 129 SNLNKHLESVTEALTVAKKHLTQRIQNLND-------KVEKQNEISKDIRKNVEEACDDLF 182 (238)
Q Consensus 129 ~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~-------kld~~~eis~~i~~eV~~v~~d~~ 182 (238)
+.+..|++.+...+...|+++.+--|+.+. ++||..+-...+...+..+++|++
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVs 64 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVS 64 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 457788888999998888888866665544 456554444444444444444443
No 139
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=70.75 E-value=18 Score=27.89 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
-|.+-.||++|.... ++| .+++.++-....--|+|++.++++|.-
T Consensus 6 Lr~~ieRiErLEeEk---~~i----~~dikdVyaEAK~~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 6 LRQFIERIERLEEEK---KAI----SDDIKDVYAEAKGNGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 355566666665543 333 444555555556789999999999874
No 140
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=70.68 E-value=1.2e+02 Score=30.55 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=20.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 026425 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (238)
Q Consensus 129 ~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~ 163 (238)
+.+...++.+.+......+++.++++.+...+.+.
T Consensus 88 ~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 122 (779)
T PRK11091 88 SRLVAKLEEMRERDLELNVQLKDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566666666676666665443
No 141
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.68 E-value=1e+02 Score=35.18 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=17.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026425 126 TAVSNLNKHLESVTEALTVAKKHLTQ 151 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tKkhLsq 151 (238)
+-.+.+.++++.+....+++++++..
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777776553
No 142
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.66 E-value=95 Score=34.36 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=38.4
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH
Q 026425 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM 194 (238)
Q Consensus 118 yVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~ 194 (238)
..-|.++......+...+++..+.+...+..+.-==..++....+..++...-+.+..+++..+..+..+++.+...
T Consensus 880 l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1311)
T TIGR00606 880 LQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGY 956 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666655554333233333333333334444444444444444444444444333
No 143
>PRK03918 chromosome segregation protein; Provisional
Probab=70.61 E-value=41 Score=34.66 Aligned_cols=64 Identities=20% Similarity=0.349 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH---HHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR---KNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~---~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
.++..++.+...++.+..+|+.+...+.+..++...+. .++.++...++.+...+..+...+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~ 225 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEK 225 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888888888766655544322 33444444444444444444333333
No 144
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.32 E-value=30 Score=27.28 Aligned_cols=45 Identities=16% Similarity=0.371 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 026425 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (238)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (238)
.-|.+..||++|.. |- +.|.+++.++-.+.+--|+|++.++.+++
T Consensus 15 QLrafIerIERlEe---Ek----~~i~~dikdvy~eakg~GFDvKa~r~iir 59 (85)
T COG3750 15 QLRAFIERIERLEE---EK----KTIADDIKDVYAEAKGHGFDVKAVRTIIR 59 (85)
T ss_pred HHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 34555566666543 23 34456666677777789999999999885
No 145
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.24 E-value=75 Score=32.26 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
.+.++..+++.++..+..+++.++.-...++.++.+++
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 462 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALR 462 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443
No 146
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=70.07 E-value=21 Score=28.35 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=9.2
Q ss_pred Hhhhhheeeeeeecc
Q 026425 97 TLGALGYGYMWWKGL 111 (238)
Q Consensus 97 ~vGavGYgYmwWKGw 111 (238)
++.+..+||+||-.+
T Consensus 11 ~lvl~L~~~l~~qs~ 25 (110)
T PF10828_consen 11 VLVLGLGGWLWYQSQ 25 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334556777887654
No 147
>PRK10698 phage shock protein PspA; Provisional
Probab=69.83 E-value=65 Score=28.75 Aligned_cols=85 Identities=12% Similarity=0.232 Sum_probs=46.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH--HHHHHhhhhHHH--hhhhHHHHHHHHHhhhhhhh
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR--KNVEEACDDLFK--VEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~--~eV~~v~~d~~~--i~~dv~~v~~~V~~Le~Ki~ 203 (238)
|..-...|+.-++....+-..|..++..|..|+.+...=...+. ......+..+.. -+.|..+--..+..+|.||+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~ 176 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRID 176 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 55555555555555556666666666666666665543222221 111111111111 13455555667777899999
Q ss_pred hhhhhhHHH
Q 026425 204 SLADKQDIT 212 (238)
Q Consensus 204 ~ie~kQd~t 212 (238)
++|..-+..
T Consensus 177 ~~Ea~aea~ 185 (222)
T PRK10698 177 QMEAEAESH 185 (222)
T ss_pred HHHHHHhHh
Confidence 999877764
No 148
>PRK02224 chromosome segregation protein; Provisional
Probab=69.81 E-value=77 Score=32.84 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=5.8
Q ss_pred chHHHHHHHHH
Q 026425 32 PELLRELQSLV 42 (238)
Q Consensus 32 sd~~g~lq~~~ 42 (238)
|-++..+.-++
T Consensus 37 Stil~ai~~~l 47 (880)
T PRK02224 37 SSLLEACFFAL 47 (880)
T ss_pred HHHHHHHHHHh
Confidence 55565555444
No 149
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=69.74 E-value=37 Score=31.44 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS 167 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis 167 (238)
+|..-..-+..+|+.+...|....+..++....|...+....+..
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEAN 47 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555555555555555555544433333
No 150
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=69.73 E-value=27 Score=33.93 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=9.7
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 026425 133 KHLESVTEALTVAKKHLTQR 152 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqR 152 (238)
++|+.++..|+++-.||.+-
T Consensus 293 ~Nle~lt~~LA~as~~l~~l 312 (370)
T PLN03094 293 KEVEKLTRVAAEASEDLRRL 312 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554444444
No 151
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=69.72 E-value=32 Score=33.84 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=47.8
Q ss_pred HhhhhheeeeeeeccccchhHHHhHhhH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH------HHHHHH
Q 026425 97 TLGALGYGYMWWKGLSFADLMYVTRKSM---ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVE------KQNEIS 167 (238)
Q Consensus 97 ~vGavGYgYmwWKGws~sDlMyVTkr~m---s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld------~~~eis 167 (238)
...+++++|. ---.|.|=+.-|+..+ ...++++.+|.+.+.+++..+++ +-++++++.++ +-..+.
T Consensus 93 ~~aaIi~~f~--GN~~~h~gV~~t~~si~~an~tv~~l~nqv~~l~~al~~t~~---~~L~~L~~il~~~~~~~~~~~~~ 167 (418)
T cd07912 93 CCAAIGVGLY--GNDETHDGVVQLTYSLRNANHTVAGIDNQTSDTEASLNVTVE---PQLTNLEDIFDARVNKTDYLQIV 167 (418)
T ss_pred HHHHHHHHhh--ccHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhHhHHHHHhCCCcchhhHHHHH
Confidence 3456666552 2234555454444444 66677777888888888877776 44555555443 223344
Q ss_pred HHHHHHHHHhhhhHHHh
Q 026425 168 KDIRKNVEEACDDLFKV 184 (238)
Q Consensus 168 ~~i~~eV~~v~~d~~~i 184 (238)
+.++..++.+..++..+
T Consensus 168 ~~~q~~~~n~~~~~~~~ 184 (418)
T cd07912 168 QGLQQMATNAAQQLTGI 184 (418)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 55556665555555555
No 152
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.43 E-value=56 Score=30.67 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
+.|...+.+|.+.|..+..+.++..+--...-.+.+..+.++.++..+.+++.....-...++++++
T Consensus 67 ~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 67 EELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555556666666666666666666666666666666555
No 153
>PRK04098 sec-independent translocase; Provisional
Probab=69.41 E-value=22 Score=30.92 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=11.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026425 126 TAVSNLNKHLESVTEALTVAKKHLTQ 151 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tKkhLsq 151 (238)
.+...+++-+..+-..+..+|.++.+
T Consensus 27 ~~~r~lGk~ir~~K~~~~~~k~~l~~ 52 (158)
T PRK04098 27 QAMVDIAKFFKAVKKTINDAKSTLDK 52 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 154
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=69.35 E-value=46 Score=27.32 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=35.1
Q ss_pred hHhhHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEA---LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~s---L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (238)
.|-.+++=.+++...||..-.| |..-|+.|....+.|...-+.. ...+.+++..++.+..+++.-+..=.
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~-------~qr~~eLqaki~ea~~~le~eK~ak~ 82 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR-------NQRIAELQAKIDEARRNLEDEKQAKL 82 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655433 4445555555555444443333 33344444444444444444322222
Q ss_pred hhhhhhh
Q 026425 197 CLDGKID 203 (238)
Q Consensus 197 ~Le~Ki~ 203 (238)
.|+.++.
T Consensus 83 ~l~~r~~ 89 (107)
T PF09304_consen 83 ELESRLL 89 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 155
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=69.20 E-value=49 Score=25.26 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIG 215 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~G 215 (238)
.+|.++|..+++.+.+-+++-...++...+=++.+++ +.+....+++-++.=+.++..|+ +++.+..-
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~----~~~e~~~~~~~l~~s~~ll~~l~--------r~~~~D~~ 71 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRS----TNDEYDGQSSLLKKSRKLLKKLE--------RRDKTDRI 71 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhHH
Confidence 4788999999999999999888776666555544332 22333344444444444554444 45555554
Q ss_pred HHH
Q 026425 216 MYL 218 (238)
Q Consensus 216 V~~ 218 (238)
+.+
T Consensus 72 li~ 74 (92)
T PF03908_consen 72 LIF 74 (92)
T ss_pred HHH
Confidence 444
No 156
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=69.16 E-value=52 Score=31.63 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (238)
|++=...|+++-+...++++.+..-+++|.--...=++.+.++...+.+.
T Consensus 9 L~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 9 LQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555666666666666666666665544444444455555555544
No 157
>PRK13694 hypothetical protein; Provisional
Probab=68.96 E-value=29 Score=27.33 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
..-|.+-.||++|+. +-++|+..|++--.+ -.--|+|++.++++|.-
T Consensus 12 ~~Lr~fIERIERLEe---Ekk~i~~dikdVyaE----AK~~GfD~K~~r~ii~l 58 (83)
T PRK13694 12 EQLRAFIERIERLEE---EKKTISDDIKDVYAE----AKGNGFDVKALKTIIRL 58 (83)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHhcCCcHHHHHHHHHH
Confidence 334455566666654 344555555544444 45679999999999863
No 158
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=68.91 E-value=43 Score=24.55 Aligned_cols=62 Identities=23% Similarity=0.412 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
|....+.|.+.|+..+..|.+ +...=-.+.-.+.+.+..+..++..++..+..|...+.++.
T Consensus 24 i~~~~~~L~~~i~~~~~eLr~---~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 24 IRQLENKLRQEIEEKDEELRK---LVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445555554444332 22222244555556666666666666666666666666554
No 159
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=68.65 E-value=19 Score=28.66 Aligned_cols=31 Identities=3% Similarity=0.139 Sum_probs=13.1
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (238)
++.++++.+..++++.++=.+..++||..++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444333333444443333
No 160
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=68.48 E-value=44 Score=24.46 Aligned_cols=64 Identities=11% Similarity=0.258 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH---hHHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLND---KVEKQNEISKDIRKNVEEACDDLFKVEHN 187 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~---kld~~~eis~~i~~eV~~v~~d~~~i~~d 187 (238)
+-+-|..+...|+.+.+.+..-++--...+...+. --++..+++..|+.....++..+..+..+
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888877777776666662 22333344444444444444444443333
No 161
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=68.11 E-value=79 Score=27.25 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=41.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 127 Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
+.+.+.+.|+.+.+.+..-+.+...=+..|..=-+++..=+...+..+.++..-+..-+.++..++.-+..+.++|.
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554444555544445555555555666666666666667777777666666665553
No 162
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=67.97 E-value=56 Score=25.51 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHhhhhhhhh
Q 026425 186 HNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ 204 (238)
.=+..+..-...||.|+.+
T Consensus 80 ~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 80 QTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3344455555555555543
No 163
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=67.95 E-value=74 Score=32.57 Aligned_cols=90 Identities=21% Similarity=0.299 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH--------HHHHHHHHHhhhhHHH----hhhhHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS--------KDIRKNVEEACDDLFK----VEHNLK 189 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis--------~~i~~eV~~v~~d~~~----i~~dv~ 189 (238)
.+..++...++.-|+.--..+...-+.|+.+|.+|.+++|-+.+.- ..........-.++.+ +...++
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~ 415 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLK 415 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888877667777777899999999999887654321 1111222222223332 344455
Q ss_pred HHHHHHHhhhhhhhhhhhhhHH
Q 026425 190 DLQSMIYCLDGKIDSLADKQDI 211 (238)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie~kQd~ 211 (238)
.|++.|+.|-..|..|..|.+.
T Consensus 416 ~v~eKVd~LpqqI~~vs~Kc~~ 437 (531)
T PF15450_consen 416 EVQEKVDSLPQQIEEVSDKCDL 437 (531)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 6666677666666666666554
No 164
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.62 E-value=23 Score=32.05 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH--HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN--VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e--V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
+.+..++....+.+++.+..+...+-| .|-+| +.-=+..+..+-+|++.+++-+.-||.|++++|.|
T Consensus 133 ~~~~~~l~~~~~~l~~~~~~~q~~~Ae------~iTEE~r~~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 133 QSVVRALRSGSRFLKHGLKQLQRNLAE------AITEEWRMAVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666665554433332 22232 11123456788899999999999999999999876
No 165
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=67.51 E-value=63 Score=25.89 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=4.5
Q ss_pred HHHHHHhhHHhH
Q 026425 149 LTQRIQNLNDKV 160 (238)
Q Consensus 149 LsqRI~~vd~kl 160 (238)
|..+++.+..++
T Consensus 87 l~~~~~~~~~~l 98 (202)
T PF01442_consen 87 LSERAEELKERL 98 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 166
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=67.31 E-value=91 Score=29.61 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred hhhhhHhhhhheeeeeeeccccchhHHHhHhhHHHHHHH---HHHhhHHHHHHHHH-HHHHHHHHHHhhHHhHHHHHHHH
Q 026425 92 MIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSN---LNKHLESVTEALTV-AKKHLTQRIQNLNDKVEKQNEIS 167 (238)
Q Consensus 92 ivpaA~vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~s---v~kqLe~Vs~sL~~-tKkhLsqRI~~vd~kld~~~eis 167 (238)
..|-++.-+.|-.|.|| .++..|-.+ .+..||.|.+.+.+ .-..|...|..+..++++|+.-.
T Consensus 24 Gp~Gl~ml~AgA~Y~~y-------------Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i 90 (301)
T PF06120_consen 24 GPPGLVMLGAGAWYYFY-------------QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAI 90 (301)
T ss_pred chHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhH---------------HHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHH
Q 026425 168 KDIRKNVEEACDDL---------------FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (238)
Q Consensus 168 ~~i~~eV~~v~~d~---------------~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (238)
+..+++|..++..+ ..+...+.++.+..+.|...-..++..|..-+.
T Consensus 91 ~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q 152 (301)
T PF06120_consen 91 EDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQ 152 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 167
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=67.20 E-value=27 Score=27.41 Aligned_cols=28 Identities=14% Similarity=0.510 Sum_probs=22.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 026425 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVE 161 (238)
Q Consensus 130 sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld 161 (238)
+|.+++|.+.+.|+..++ |++.++.+|-
T Consensus 2 ~V~~eId~lEekl~~cr~----~le~ve~rL~ 29 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRR----RLEAVESRLR 29 (85)
T ss_pred cHHHHHhhHHHHHHHHHH----HHHHHHHHHc
Confidence 578899999999988876 5677777775
No 168
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=67.18 E-value=41 Score=25.66 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=39.4
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 026425 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~ 164 (238)
-+||.+--.-|-+-|.|+.+..+-.-..+..|||.+...+|+..
T Consensus 11 pkNmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLE 54 (73)
T KOG4117|consen 11 PKNMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLE 54 (73)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 47899999999999999999999999999999999998888763
No 169
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=66.98 E-value=1.3e+02 Score=31.86 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
.+-+..+-..+....+.-...+..+..+++.+..++.......+.-++.+ ..+..|+..+..++..-.++|..
T Consensus 372 k~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri-------~~LE~ELr~l~~~A~E~q~~Lns 444 (717)
T PF09730_consen 372 KAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI-------SELEKELRALSKLAGESQGSLNS 444 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344444444445556666677777777777777776655444444444 44445566666666666666665
Q ss_pred hhhhhHHHHHHHHHHHHHhhccccccccc
Q 026425 205 LADKQDITNIGMYLLCNFVDGKKGRTTER 233 (238)
Q Consensus 205 ie~kQd~tn~GV~~Lc~f~~~~~~~~p~~ 233 (238)
-..-=..--..+.-|+..|--.++..|++
T Consensus 445 AQDELvtfSEeLAqLYHHVC~cNgeTPnR 473 (717)
T PF09730_consen 445 AQDELVTFSEELAQLYHHVCMCNGETPNR 473 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCcc
Confidence 55444444555666655555555555654
No 170
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=66.52 E-value=92 Score=27.43 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
.-++++...|..++.|+-+.++-...++.+..+....+++...+++.+++-+...|-+-.++
T Consensus 124 ~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 124 AELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666777777777776666666665555555666666677777766666666655443
No 171
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.38 E-value=58 Score=28.04 Aligned_cols=75 Identities=11% Similarity=0.227 Sum_probs=53.4
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh-hhhhhhhhhhhhHHHHHHHHHHHHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC-LDGKIDSLADKQDITNIGMYLLCNF 222 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~-Le~Ki~~ie~kQd~tn~GV~~Lc~f 222 (238)
++..+++.|+.+|.....+...+.+.-.++..|+..+|.-+..+-..-.+ |+..+..+...-+....+...|-+.
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~~ 83 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNKY 83 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777788888888888877777777766 7777776666655555555555443
No 172
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.18 E-value=94 Score=30.57 Aligned_cols=52 Identities=15% Similarity=0.339 Sum_probs=35.5
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh--------HHHHHHHHHhhhhhhhhhh
Q 026425 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN--------LKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d--------v~~v~~~V~~Le~Ki~~ie 206 (238)
|.++|++.+ ++.++.=++|+..++.++..+..- ...|++.++..-.||..||
T Consensus 259 R~erLEeql---Nd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 259 RYERLEEQL---NDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444444444 455566677788888887655443 4567888888899999999
No 173
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=65.93 E-value=94 Score=32.66 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 026425 211 ITNIGMYLLCNFV 223 (238)
Q Consensus 211 ~tn~GV~~Lc~f~ 223 (238)
.-+.++..+|.++
T Consensus 751 ~~d~~~~~~C~~i 763 (806)
T PF05478_consen 751 IYDSAVVILCSRI 763 (806)
T ss_pred HHHhHHHHHHHHH
Confidence 3344444444443
No 174
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=65.45 E-value=60 Score=32.01 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=29.7
Q ss_pred ehhhhhHhhhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHhhHHhHHH
Q 026425 91 LMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAK--KHLTQRIQNLNDKVEK 162 (238)
Q Consensus 91 ~ivpaA~vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tK--khLsqRI~~vd~kld~ 162 (238)
+++-|+.+|+.|| -||++- .-..+.-...+.+|++....+.+..+ +.+..++.....+++.
T Consensus 39 all~aLgLGagg~--~f~QqQ---------~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~ 101 (391)
T COG2959 39 ALLLALGLGAGGY--YFGQQQ---------NVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDR 101 (391)
T ss_pred HHHHHHHhchhHH--HHHHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455565555 367752 22333444445555555555555555 4555444444444444
No 175
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=65.36 E-value=45 Score=28.32 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH-HhhhhHHHhhhhHHH--------HHHHHHhhhhh-----
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE-EACDDLFKVEHNLKD--------LQSMIYCLDGK----- 201 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~-~v~~d~~~i~~dv~~--------v~~~V~~Le~K----- 201 (238)
+.+++++..+-+.|..-|+....++.+..++++.=-+.|. -+++|++++...... ++.+=+.|=..
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~~~~~~~~~~~lie~slw~~L~~It 82 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEELREWLSPDLQLIEESLWDELSSIT 82 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhh
Confidence 4455555555556655555555555544444443333332 356666666666555 22222223233
Q ss_pred ----hhhhhhhhHHHHHHHHHH
Q 026425 202 ----IDSLADKQDITNIGMYLL 219 (238)
Q Consensus 202 ----i~~ie~kQd~tn~GV~~L 219 (238)
++-.|-.||+-++|+|.=
T Consensus 83 DkTqvEw~el~~d~~h~g~Y~s 104 (146)
T PF07295_consen 83 DKTQVEWAELAQDLEHHGVYHS 104 (146)
T ss_pred chhHHHHHHHHHHHHhcCCeec
Confidence 344455678888886643
No 176
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=65.22 E-value=42 Score=27.07 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=20.3
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026425 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQ 151 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsq 151 (238)
||++-++++.+.+||.++++.+.+-|+++..
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~ 33 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQE 33 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777766666666655544
No 177
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=64.64 E-value=1.1e+02 Score=27.61 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
|.++...++++...+++...=-..-...-..+..++..+..|++.....-..|+.++..+..
T Consensus 70 ka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 70 KARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 33334444443333333332222223333344444444445555555555555555555544
No 178
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=64.59 E-value=59 Score=28.05 Aligned_cols=51 Identities=29% Similarity=0.407 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHH--HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 026425 135 LESVTEALTVAKKH--LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (238)
Q Consensus 135 Le~Vs~sL~~tKkh--LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (238)
=+.+++.|....+| +.+||+.|....+...+-++.|.+++.+.+.+|..+-
T Consensus 11 d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 11 DDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 5677777777777777777777777777776665543
No 179
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=64.58 E-value=72 Score=37.09 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=14.0
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 176 EACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
.+..+++....++..+..-+..|+.+|.+.+
T Consensus 855 ~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~ 885 (1822)
T KOG4674|consen 855 SLLTSLDSVSTNIAKLEIKLSELEKRLKSAK 885 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333344444444444444445555554444
No 180
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.42 E-value=62 Score=32.31 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 164 NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
......++.++..++.++.+++.+.......|..|+.++..+
T Consensus 308 ~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~ 349 (522)
T PF05701_consen 308 RASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKT 349 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Confidence 334444445555555555555555555555555555554433
No 181
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=63.98 E-value=1.1e+02 Score=31.47 Aligned_cols=61 Identities=13% Similarity=0.257 Sum_probs=53.2
Q ss_pred eeeccccchh--HHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Q 026425 107 WWKGLSFADL--MYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS 167 (238)
Q Consensus 107 wWKGws~sDl--MyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis 167 (238)
.=+|+|.+|| |-.-|--|..-.+-++-+-+.+..++-+++.+...+++.|.+++.+.+-+.
T Consensus 361 ~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~ 423 (622)
T COG5185 361 RKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLI 423 (622)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888886 889999999999999999999999999999999999999999877655433
No 182
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.66 E-value=41 Score=28.17 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=13.0
Q ss_pred hHHHHHHH--HHHHHHH-hhhcCCCeEEEe
Q 026425 55 TDAIKDQL--NRLKFEC-QRASSGQIFVRN 81 (238)
Q Consensus 55 ~d~L~aQV--~~L~~El-~las~r~iTvvn 81 (238)
.+.|..+| .....=| .|+....|+.=.
T Consensus 23 ~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~ 52 (169)
T PF07106_consen 23 FDNLHNKVGKTAVQKALDSLVEEGKIVEKE 52 (169)
T ss_pred HHHHHhhccHHHHHHHHHHHHhCCCeeeee
Confidence 34444444 2233334 566666666543
No 183
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=63.61 E-value=47 Score=30.76 Aligned_cols=63 Identities=14% Similarity=0.306 Sum_probs=32.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHH-HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEK-QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~-~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (238)
++|+++-.-|...-+.+.+||+.+..+..+ ...+.+++ +.+.+...++.++..++.++..+..
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l-~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQL-KQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 345555555555555666666655544332 22222222 2244444555666666666666655
No 184
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=63.55 E-value=46 Score=31.61 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=69.5
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccccc
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGR 229 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~ 229 (238)
..||..|..+|-=|+--++..+..-.++-+-+.++..||+-.+..|--|-.|+.+-+..=..--.|.--+-+.++.++..
T Consensus 235 ~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~ 314 (330)
T KOG2991|consen 235 EGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDE 314 (330)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 46899999999999989999998888888889999999999999998888888776655555667777778888887776
Q ss_pred ccccc
Q 026425 230 TTERT 234 (238)
Q Consensus 230 ~p~~~ 234 (238)
...++
T Consensus 315 ~~a~~ 319 (330)
T KOG2991|consen 315 VDAID 319 (330)
T ss_pred ccccC
Confidence 65543
No 185
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=63.50 E-value=73 Score=30.95 Aligned_cols=73 Identities=26% Similarity=0.357 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh-HHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD-LFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d-~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (238)
++-..+|.+..+++++. .+.++++++|..... -.++ .+.+...++.+.+-+..||.++..++.+.+.....|-
T Consensus 34 ~ld~~~r~~~~~~~~l~---~erN~~sk~i~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lP 107 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQ---AKRNELSKQIGKAKG-QKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIP 107 (418)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34556777777777765 556777888866321 1233 5556666667777777777777777776665544443
No 186
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.33 E-value=99 Score=30.41 Aligned_cols=77 Identities=6% Similarity=0.192 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
|-+.+..+-+...++.+++.+-|.++...+.-+-..|+|-..-.+.+.++|++.- +--..++.++++-+..+|.||+
T Consensus 217 ~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~---elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 217 ILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLT---ELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHH
Confidence 4445666667777777777777777777777777777777777777777776654 3334566666666666666665
No 187
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=63.33 E-value=35 Score=25.02 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhHHhHH
Q 026425 145 AKKHLTQRIQNLNDKVE 161 (238)
Q Consensus 145 tKkhLsqRI~~vd~kld 161 (238)
+|+.|..+.+.+-++++
T Consensus 27 ~R~~l~~~~~~~~~~~~ 43 (74)
T PF12732_consen 27 TREKLKDKAEDLKDKAK 43 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 188
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=63.23 E-value=37 Score=29.27 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=22.8
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
|+.+...-++.-+|.+..++|...++..++.+..++..+-.-|..|+
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555444444444444444444444
No 189
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=63.14 E-value=93 Score=26.30 Aligned_cols=20 Identities=35% Similarity=0.326 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHH-hhhcC
Q 026425 55 TDAIKDQLNRLKFEC-QRASS 74 (238)
Q Consensus 55 ~d~L~aQV~~L~~El-~las~ 74 (238)
...+..|++.|.+=| .++..
T Consensus 19 ~~~~~~~l~~l~~ai~~~~~~ 39 (204)
T PF04740_consen 19 LKELKEQLESLQKAINQFISS 39 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 344555555555555 55544
No 190
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.09 E-value=1.9e+02 Score=30.74 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (238)
..+...|..+.++++-+-....+..+...++...+.+++-+...+...-..-..+++..+-....++..+|.-+..++..
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999988888888888888888888888888888888888888
Q ss_pred hhhhhhhhHHHHHHHH
Q 026425 202 IDSLADKQDITNIGMY 217 (238)
Q Consensus 202 i~~ie~kQd~tn~GV~ 217 (238)
+++....=+-.+.-+.
T Consensus 195 ~~~~~~ql~~~~q~~~ 210 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQ 210 (716)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8776654444444433
No 191
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.06 E-value=1.3e+02 Score=27.77 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=10.8
Q ss_pred chHHHHHHHHHHHHHH
Q 026425 54 FTDAIKDQLNRLKFEC 69 (238)
Q Consensus 54 ~~d~L~aQV~~L~~El 69 (238)
....+.+|+.+|..++
T Consensus 82 ~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 82 DAAELESQVLRLEAEV 97 (423)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556777777777766
No 192
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=63.02 E-value=68 Score=24.68 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=31.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 026425 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (238)
Q Consensus 131 v~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (238)
+...|+.-++.|...-....+|++.+.....+-.++.++++.++.-+...+..+
T Consensus 23 ~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~l 76 (88)
T PF10241_consen 23 TLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSL 76 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555566666666666666666666666665555444444443
No 193
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=62.68 E-value=69 Score=29.94 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
...++.++..=-.+|+.|..=-..=..|-..+... -++.++-+.+++-+..++..++++...+.++..=...||.||.+
T Consensus 123 R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~-~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 123 RQLASEITQRGASLYDLLGKEVELREERQRALARP-LELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555543332222233333333 34567888888888888888888888888888888888888864
Q ss_pred h
Q 026425 205 L 205 (238)
Q Consensus 205 i 205 (238)
-
T Consensus 202 k 202 (267)
T PF10234_consen 202 K 202 (267)
T ss_pred H
Confidence 3
No 194
>PRK10698 phage shock protein PspA; Provisional
Probab=62.56 E-value=1.1e+02 Score=27.17 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
..+.+..++..+......+..++.-+..|+.||.+...+++
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666677777777777777777776665
No 195
>PLN02678 seryl-tRNA synthetase
Probab=62.35 E-value=39 Score=33.47 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
+..-+|.+..+++.+..+ .++++++|.. ...-.++.+.+...++.+.+-+..||.++..++.+-+
T Consensus 38 ld~~~r~l~~~~e~lr~e---rN~~sk~I~~-~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKE---FNKLNKEVAK-LKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777776655 4566666654 1122233334444444444444445555555554433
No 196
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=62.33 E-value=80 Score=30.64 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=48.1
Q ss_pred hhhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH---HHHHHHHHHHHH
Q 026425 98 LGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK---QNEISKDIRKNV 174 (238)
Q Consensus 98 vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~---~~eis~~i~~eV 174 (238)
.+++|-|+ +---..+|=|+.--.++.||-..++.-=.+|++.....+.-+.+.+++|++-.++ ..+..+.+++.+
T Consensus 74 ~aaigvG~--yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~ 151 (406)
T PF04906_consen 74 CAAIGVGF--YGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQA 151 (406)
T ss_pred HHHHHccc--ccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 36666554 3334456777777777777777766444555555555555566666666665533 333444445555
Q ss_pred HHhhhhHHHhh
Q 026425 175 EEACDDLFKVE 185 (238)
Q Consensus 175 ~~v~~d~~~i~ 185 (238)
+.+-..++.|.
T Consensus 152 ~~v~~~l~~l~ 162 (406)
T PF04906_consen 152 ENVVQQLDELP 162 (406)
T ss_pred HHHHHHHhcCc
Confidence 55554444443
No 197
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.15 E-value=1.4e+02 Score=29.23 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=39.7
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 026425 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (238)
Q Consensus 115 DlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (238)
+|+++-+.-|.+.-+.. ..|..-+|.|..-++||..-+++|+.++-..++-+.-.+..+.|..+|.++
T Consensus 218 klR~r~eeeme~~~aeq-~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQ-ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 45555555555544333 235555666666666666666666666666666666666666666666655
No 198
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=61.82 E-value=1.5e+02 Score=28.38 Aligned_cols=15 Identities=7% Similarity=0.051 Sum_probs=7.4
Q ss_pred hHHHhHhhHHHHHHH
Q 026425 116 LMYVTRKSMATAVSN 130 (238)
Q Consensus 116 lMyVTkr~ms~Av~s 130 (238)
..-.|..|+..|=+.
T Consensus 202 W~~~s~~ni~~a~~e 216 (384)
T PF03148_consen 202 WEEFSNENIQRAEKE 216 (384)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344456665555433
No 199
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=61.81 E-value=65 Score=32.15 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=20.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 026425 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd 157 (238)
+....+...|++++..|.++...|....+.++
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~ 297 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDELE 297 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35566666777777777777776666555443
No 200
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=61.52 E-value=1.8e+02 Score=28.95 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=31.7
Q ss_pred HHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 026425 117 MYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQR 152 (238)
Q Consensus 117 MyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqR 152 (238)
|=--|+.|++-+..+-+.++.+.+.+...|+...+|
T Consensus 204 ~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~R 239 (424)
T PF03915_consen 204 MESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQR 239 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345678999999999999999999999999887776
No 201
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=61.22 E-value=91 Score=32.12 Aligned_cols=87 Identities=13% Similarity=0.259 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (238)
.-|...|.+-...|.++..--...|.-|...+..+..+.+....=++.-.+++..++.....+-.+++.=.+....|...
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888889999999999999999999999999988877766666677888888888888888888888888888888
Q ss_pred hhhhhhh
Q 026425 202 IDSLADK 208 (238)
Q Consensus 202 i~~ie~k 208 (238)
+.++...
T Consensus 477 ~e~~~k~ 483 (594)
T PF05667_consen 477 LEKLPKD 483 (594)
T ss_pred HHhCCCC
Confidence 8777654
No 202
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=61.21 E-value=17 Score=33.06 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 026425 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (238)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (238)
|-.+|.++|+.|...+..|..+...|.+.|-+++
T Consensus 5 tle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQ 38 (216)
T PF07957_consen 5 TLEELKKQVDELQALVKKQSKLISKTGQQVLELQ 38 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999887766
No 203
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=61.11 E-value=1.3e+02 Score=30.08 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 166 ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
..+.++.|+.+++.+|..+..|+..++..|..|...|...-..
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~e 324 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEE 324 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888888888888888888888888877655433
No 204
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.06 E-value=93 Score=28.61 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=61.0
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHh
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (238)
++..++|.++.+|-...-+...+.++..++..|..+.+--+..+-.+=.+|+..|..+...-+-+..|+..|-+..
T Consensus 55 e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 55 AIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567889999999999999999998888888877777776666666667788888888888888888887777654
No 205
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.83 E-value=58 Score=36.38 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHH
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (238)
++.-...+....+|+++.|..+.+++++-..-...+.+.....+.++.+...++.++...-..++.+++.+..+=+-...
T Consensus 396 ~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~ 475 (1293)
T KOG0996|consen 396 LEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETE 475 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44445566677788888888888888777666666677777777777777788888877777777777776655554444
Q ss_pred HH
Q 026425 215 GM 216 (238)
Q Consensus 215 GV 216 (238)
|+
T Consensus 476 ~~ 477 (1293)
T KOG0996|consen 476 GI 477 (1293)
T ss_pred hh
Confidence 44
No 206
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.77 E-value=1.9e+02 Score=30.09 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=49.9
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHhhHHh--------------HHHHHHHHHHHHH
Q 026425 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVA------KKHLTQRIQNLNDK--------------VEKQNEISKDIRK 172 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~t------KkhLsqRI~~vd~k--------------ld~~~eis~~i~~ 172 (238)
++++|==+++.+.+-.+++.++++......++. ++...+|++-+..+ +.++.--.+..-.
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK 294 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH
Confidence 566666677777777776666655544333222 22222233222222 1122222222334
Q ss_pred HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Q 026425 173 NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYL 218 (238)
Q Consensus 173 eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 218 (238)
.+..++..++.-..+++.|+..+..|-.+|+ +|+++-.-|..
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie----~Q~iS~~dve~ 336 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIE----LQGISGEDVER 336 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCHHHHHH
Confidence 4555555555555556666666666666555 66555554443
No 207
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=60.58 E-value=52 Score=30.74 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=4.8
Q ss_pred HhhHHHHH
Q 026425 121 RKSMATAV 128 (238)
Q Consensus 121 kr~ms~Av 128 (238)
|+.+.||.
T Consensus 109 rkEl~nAl 116 (290)
T COG4026 109 RKELKNAL 116 (290)
T ss_pred HHHHHHHH
Confidence 55666664
No 208
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=60.56 E-value=1.1e+02 Score=31.32 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=64.8
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH----------H------HHHHHhhhhHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI----------R------KNVEEACDDLFK 183 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i----------~------~eV~~v~~d~~~ 183 (238)
++|..-.-++.+-+-|+.+++.++. ......+|.++++.+|...+-.+.- + .++-+...|+|+
T Consensus 336 A~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~ 414 (533)
T COG1283 336 AAREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEH 414 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHH
Confidence 5666667777888888889999987 7777888888888888765433210 1 234566677888
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHh
Q 026425 184 VEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (238)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (238)
||+=++.+ +.-.+.|+ +.+-.++-.|..-||++.
T Consensus 415 IgDiie~l---~~~~~kk~---~~~~~fse~~~~el~~l~ 448 (533)
T COG1283 415 IGDIIERL---LELADKKI---ANGRAFSEDGLEELDALF 448 (533)
T ss_pred HHHHHHHH---HHHHHHHH---hcCCCCCHHHHHHHHHHH
Confidence 88777663 33333333 346667777777777654
No 209
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.53 E-value=80 Score=32.50 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=23.8
Q ss_pred hhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 178 CDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
+.|+.+|=.|...||.-++.|.+|++|=-
T Consensus 504 k~eI~KIl~DTr~lQkeiN~l~gkL~RtF 532 (594)
T PF05667_consen 504 KEEIEKILSDTRELQKEINSLTGKLDRTF 532 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56777888888888888888899998753
No 210
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=60.52 E-value=57 Score=31.75 Aligned_cols=67 Identities=21% Similarity=0.365 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (238)
+-..+|.+..+++++..+ .++++++|.... .-.++.+.+..+++.+.+-+..||.++..++.+-+..
T Consensus 33 ld~~~r~l~~~~~~lr~~---rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 33 LDEERRELQTELEELQAE---RNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888777665 456677776521 1122444555566666666666666666666555443
No 211
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.50 E-value=31 Score=28.77 Aligned_cols=66 Identities=21% Similarity=0.384 Sum_probs=36.7
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLC 220 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 220 (238)
.++++.|..|+--.+.++-.|-+||..--.-+..+++|+++-.-...+==+|+..+... .|+..+|
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~ 100 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLC 100 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHH
Confidence 34455555555555666666666665555556666666655554444444444444332 6666666
No 212
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=60.30 E-value=43 Score=26.29 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=36.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (238)
.+.|..+|+++. ++-.||.+|-|+|-.+|.+.-+-.++|+.+..+-.
T Consensus 28 ~~~ins~LD~Ln----s~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 28 YAAINSMLDQLN----SCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777655 45578999999999999999999999988875443
No 213
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=60.26 E-value=37 Score=28.95 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (238)
-+.+++++-..+++.|+.+|.+-+ ...++++|-....|+.++-..+..+...+...+.
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~--~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~ 61 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAK--SNLGKESIRMALEDLADHYCKIGDLEEALKAYSR 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467888889999999999998755 6778888888888888888888888877776664
No 214
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=60.24 E-value=1.2e+02 Score=32.30 Aligned_cols=38 Identities=5% Similarity=0.092 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026425 185 EHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNF 222 (238)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f 222 (238)
..++..+.+.+..+.+++.++.....-.-.+...|-+|
T Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (910)
T TIGR00833 606 LSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDY 643 (910)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554444333444333333
No 215
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=60.06 E-value=2.9 Score=34.41 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 026425 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (238)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (238)
.+.+......+...+.-+.+|...+..|..|+..++..++.
T Consensus 44 ~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 44 NQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333444444444455555666666666666666666655
No 216
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=59.93 E-value=53 Score=30.97 Aligned_cols=54 Identities=7% Similarity=0.157 Sum_probs=35.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 026425 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (238)
.++..+...|+++-....+.=.++++||.+-..+|+...+=+...+.+|..+++
T Consensus 18 Eti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456667777777777777777777888777777777555544444555544443
No 217
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=59.87 E-value=31 Score=27.19 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=12.8
Q ss_pred HHHhHhhHHHHHHHHHHhhHHH
Q 026425 117 MYVTRKSMATAVSNLNKHLESV 138 (238)
Q Consensus 117 MyVTkr~ms~Av~sv~kqLe~V 138 (238)
|||- ++..+|...+.+.++..
T Consensus 59 vlv~-~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 59 LLVK-TDKEEAIQELKEKKETL 79 (110)
T ss_pred hhhe-ecHHHHHHHHHHHHHHH
Confidence 6664 55666666666655554
No 218
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=59.84 E-value=42 Score=30.71 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
..+=.-|.+.|.++.+|...|...+.++.......+.||..++.|=.+.=+-+..++
T Consensus 78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556788999999999999999999988888888888888877555544444443
No 219
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=59.60 E-value=75 Score=27.72 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=41.4
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH-HHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEI-SKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~ei-s~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
-|+.++++-+++- .|+.-+.-|-..=..+++.+.-+-.+..++-++ .+.+.++|.+++.-++....|+..+
T Consensus 70 ~kk~~~~~~eele-rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 70 QKKQLQDIKEELE-RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred hhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 3455555555542 344444444444455556666666666666555 6666677777777777766666554
No 220
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.50 E-value=1.3e+02 Score=29.70 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 026425 124 MATAVSNLNKHLESVTEALTV 144 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~ 144 (238)
-+.++..+-++|+++...++.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~ 89 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRD 89 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 444666666666655554443
No 221
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=59.41 E-value=24 Score=28.46 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (238)
|+.|-.+|+.+..++.+..+=...+++++.++-+.=.++.-+-+.++..+..++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888999999988888888888999988888888888899999999988876
No 222
>PHA03395 p10 fibrous body protein; Provisional
Probab=59.34 E-value=36 Score=27.00 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=5.1
Q ss_pred HHhhHHhHHH
Q 026425 153 IQNLNDKVEK 162 (238)
Q Consensus 153 I~~vd~kld~ 162 (238)
|..||+|+|.
T Consensus 13 Ikavd~KVda 22 (87)
T PHA03395 13 IKAVSDKVDA 22 (87)
T ss_pred HHHHhhHHHH
Confidence 4455555553
No 223
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.30 E-value=79 Score=33.08 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 026425 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (238)
+.+..-..+..+-+.|..++.+|+..+++++......++++..++..+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666777777777777777766666666665555443
No 224
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=59.06 E-value=86 Score=25.71 Aligned_cols=20 Identities=5% Similarity=0.147 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHH-hhhc
Q 026425 54 FTDAIKDQLNRLKFEC-QRAS 73 (238)
Q Consensus 54 ~~d~L~aQV~~L~~El-~las 73 (238)
.-+.+..+++.+...+ .+..
T Consensus 27 ~f~~~~~~~~~~~~~~~~l~~ 47 (229)
T PF03114_consen 27 EFEELEEKFKQLEESIKKLQK 47 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666 4443
No 225
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=58.99 E-value=99 Score=25.30 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 026425 160 VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (238)
Q Consensus 160 ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (238)
..+.-.-.+.|..+...++..+..+...-...-..+..+..+|.+|..-|+-
T Consensus 42 v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveNW 93 (121)
T PF06320_consen 42 VSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVENW 93 (121)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 3334444444445555555555555555555555555555555555444443
No 226
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.74 E-value=29 Score=34.91 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 160 VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 160 ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
|.++++-++++++++..++.+++.+....+..++.++.||..+.+++..+
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555554444444444444555555555555555544
No 227
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=58.72 E-value=1e+02 Score=25.27 Aligned_cols=56 Identities=13% Similarity=0.283 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH----hhhhHHHHHHHHHh
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK----VEHNLKDLQSMIYC 197 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~----i~~dv~~v~~~V~~ 197 (238)
.|..--|+|......+-.+-++-..+.....+.+.++ +|+++ |..|+..|-..++-
T Consensus 51 ~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEi-GDveNWa~~iE~Dl~~i~~~L~~ 110 (121)
T PF06320_consen 51 KIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEI-GDVENWAEMIERDLRVIEETLRY 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 3334446666666666666666666777777777666 55543 66666666444443
No 228
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=58.70 E-value=76 Score=23.87 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVE 161 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld 161 (238)
+.++...+.....++.+....+|.++....+.+-.-|+
T Consensus 19 ~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~ 56 (127)
T smart00502 19 LEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALN 56 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555554444444444
No 229
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.65 E-value=2e+02 Score=31.95 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=10.0
Q ss_pred HHHHHhhHHhHHHHHHHHHHHH
Q 026425 150 TQRIQNLNDKVEKQNEISKDIR 171 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~ 171 (238)
..+++.+...+++...+.+.|+
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 940 QDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 230
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=58.63 E-value=2.1e+02 Score=29.46 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 026425 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIG 215 (238)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~G 215 (238)
.+.+|.+|+...-..+.+...-....+.+...+++.+.....-++.-++-+..|..-+.++-..+|.|..=
T Consensus 256 ~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~ae 326 (546)
T PF07888_consen 256 LEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAE 326 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333333222223344556677777777778888888888888888888888888877543
No 231
>PRK12704 phosphodiesterase; Provisional
Probab=58.33 E-value=1.3e+02 Score=30.41 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHH
Q 026425 188 LKDLQSMIYCLDGKIDSLADKQDI 211 (238)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~kQd~ 211 (238)
+.....-+..++.+++.+...|..
T Consensus 119 Le~re~eLe~~~~~~~~~~~~~~~ 142 (520)
T PRK12704 119 LEQKQQELEKKEEELEELIEEQLQ 142 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344433333333
No 232
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=58.28 E-value=18 Score=34.60 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=19.4
Q ss_pred HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 173 NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 173 eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
.+.++.+.+..+...+......+..|+.|++.+|..-
T Consensus 152 ris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 152 RISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444445555555555555555666666665443
No 233
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=58.20 E-value=97 Score=24.94 Aligned_cols=65 Identities=8% Similarity=0.053 Sum_probs=49.4
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhh-------hHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHh
Q 026425 151 QRIQNLNDKVEKQNEISKDIRKNVEEACD-------DLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (238)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~-------d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (238)
++++.+|+++-.+...+...-++++.-+. .-+.|..-...+...+...+..|. .=|+|||++.
T Consensus 6 ~~L~~Idk~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr----------~qI~~L~e~~ 75 (117)
T PF10280_consen 6 QQLNEIDKKIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELR----------RQIKYLEEVS 75 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhc
Confidence 45777888888888888888888877776 567777777777777777777776 3488999987
Q ss_pred hc
Q 026425 224 DG 225 (238)
Q Consensus 224 ~~ 225 (238)
.+
T Consensus 76 ~~ 77 (117)
T PF10280_consen 76 II 77 (117)
T ss_dssp TT
T ss_pred cc
Confidence 66
No 234
>PHA00276 phage lambda Rz-like lysis protein
Probab=58.09 E-value=61 Score=27.87 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=27.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 026425 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (238)
Q Consensus 156 vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (238)
....+.++.+++...++|+..++....++..|+.+
T Consensus 47 ~~~~QqaVaal~~~yqkEladaK~~~DrLiadlRs 81 (144)
T PHA00276 47 TADTQAAINAVSKEYQEDLAALEGSTDRVIADLRS 81 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 33347778888889999999999888888877764
No 235
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.07 E-value=44 Score=25.11 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh
Q 026425 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD 180 (238)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d 180 (238)
.+..+|..+++.++..++.+..-.+.+.+++.+++..
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 236
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=58.06 E-value=53 Score=21.81 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=24.6
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHH
Q 026425 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMI 195 (238)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V 195 (238)
+.|+.+...+-++..+...+..+|.+=.+=+.+|..+++..+.-+
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~ 50 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNV 50 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666555444455555444444433
No 237
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=57.91 E-value=85 Score=31.98 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=55.5
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
+.|..+-..-..++.++.+.++.|..-++.+...|...-+++....+=...+-+++..+ ...|.+...+.+-=..|
T Consensus 131 a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDqRD~L 206 (552)
T COG1256 131 AARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQRDQL 206 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHHHHHH
Confidence 67888888888999999999999999998888888776666555444444444555444 44555655555554555
Q ss_pred hhhhhh
Q 026425 199 DGKIDS 204 (238)
Q Consensus 199 e~Ki~~ 204 (238)
..+|..
T Consensus 207 v~eLs~ 212 (552)
T COG1256 207 VDELSQ 212 (552)
T ss_pred HHHHHh
Confidence 555543
No 238
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.88 E-value=1.4e+02 Score=28.21 Aligned_cols=88 Identities=14% Similarity=0.210 Sum_probs=55.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 129 ~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
..-+.+++.....+...-+++.++-+.+++-+++....+..+..-+.+.+..+...=.++..+......-...+.++-..
T Consensus 214 ~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~ll~~ 293 (359)
T COG1463 214 AAASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQLLHG 293 (359)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 33345555556666666677777778888888888888888887777777666655555555555555555555544444
Q ss_pred hHHHHHHH
Q 026425 209 QDITNIGM 216 (238)
Q Consensus 209 Qd~tn~GV 216 (238)
........
T Consensus 294 ~p~~~~~~ 301 (359)
T COG1463 294 LPTYAANL 301 (359)
T ss_pred cchhhhhh
Confidence 44433333
No 239
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=57.83 E-value=1.4e+02 Score=26.71 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (238)
+..-+...+..+.++..+|..-..||++..+......+.+.++.+=......-++.+ +.|..+|+..|+-++
T Consensus 169 ~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~-------~~k~~~l~~~~~~~~ 240 (264)
T PF06008_consen 169 FQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDL-------EKKKQELSEQQNEVS 240 (264)
T ss_pred HhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 344455556666677777777777777777777777666666654444444444444 556666665555444
No 240
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=57.34 E-value=1.9e+02 Score=27.93 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=32.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH--------------HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 026425 126 TAVSNLNKHLESVTEALTVAKKHL--------------TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tKkhL--------------sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (238)
+..+.+.+.+.++.+.|....+.. ...|..|-.++.+.++-++.++.-|.++-.|+.+
T Consensus 25 ~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~ 96 (383)
T PF04100_consen 25 ELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQ 96 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666554433 3445555555666666666666666555555544
No 241
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=57.13 E-value=1.3e+02 Score=26.12 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=24.3
Q ss_pred hHHHhHhhHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHh
Q 026425 116 LMYVTRKSMATAVSNLNKHLESVTEAL-TVAKKHLTQRIQNLNDK 159 (238)
Q Consensus 116 lMyVTkr~ms~Av~sv~kqLe~Vs~sL-~~tKkhLsqRI~~vd~k 159 (238)
++..--.+..+.+..+.++++++.+.+ ...++..-++|-.+...
T Consensus 115 il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~ 159 (292)
T PF01544_consen 115 ILDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRE 159 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 344455666677777777777777777 33333333333333333
No 242
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=56.95 E-value=54 Score=29.87 Aligned_cols=57 Identities=9% Similarity=0.194 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 026425 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (238)
+||+..++-...--+|.++|+.+...+++..-..+...-++..+++.-.++--|++.
T Consensus 44 ~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 44 QLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334445555555555555554444444444444444444444444444
No 243
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=56.94 E-value=93 Score=28.12 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=45.1
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH-HHHHHHHhhhhHHHhhhhHHHHHH
Q 026425 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD-IRKNVEEACDDLFKVEHNLKDLQS 193 (238)
Q Consensus 115 DlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~-i~~eV~~v~~d~~~i~~dv~~v~~ 193 (238)
|-|-.+||.|+++...+++.|..+++.=.. -|+.-+..|.+..+....+-.. -.+|...+.+-+...-.++++++.
T Consensus 48 ~~lv~~rkela~~~~~fs~al~~L~~~E~t---~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~ 124 (219)
T cd07621 48 DKMTRKHKDVADSYIKISAALTQLATSEPT---PLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKD 124 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 556678999999999999999888876331 3333333333333333322222 234555566666666666666654
Q ss_pred H
Q 026425 194 M 194 (238)
Q Consensus 194 ~ 194 (238)
+
T Consensus 125 ~ 125 (219)
T cd07621 125 L 125 (219)
T ss_pred H
Confidence 4
No 244
>TIGR02550 flagell_flgL flagellar hook-associated protein 3. This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; members of the family vary between 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC.
Probab=56.81 E-value=1.5e+02 Score=26.61 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=17.4
Q ss_pred cchHHHHHHHHHHHHHH-hhhc
Q 026425 53 NFTDAIKDQLNRLKFEC-QRAS 73 (238)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~las 73 (238)
.+-.+++.+++.|.+++ .++.
T Consensus 104 ~~~~~ia~e~~~l~~~i~~~~N 125 (306)
T TIGR02550 104 DDRKAIAKEIKQLLDQLVNLAN 125 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
Confidence 33558999999999999 8775
No 245
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=56.76 E-value=1.4e+02 Score=28.40 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH---HhhhhHHHHHHHHHhhhhhhh
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF---KVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~---~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
|-.--.++.+-|+.+..+|..+-.+-++.++-.....+++.+++.+.. .-|.++.++...++-||-+.-
T Consensus 53 ~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 53 LREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQ 124 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHH
Confidence 333445666677777778888888888777777777777777777776 456777777665555555443
No 246
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=56.64 E-value=4.5 Score=34.44 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=21.0
Q ss_pred CCCCCcceeehhhhhHhhhhhe-eeeeee
Q 026425 82 ENSGGNATSLMIPAATLGALGY-GYMWWK 109 (238)
Q Consensus 82 ~~sGg~~~~~ivpaA~vGavGY-gYmwWK 109 (238)
+|++.++.+.++|..++|++-| .|.-.|
T Consensus 75 ~g~~~g~~~~imPlYtiGI~~f~lY~l~K 103 (152)
T PF15361_consen 75 GGSGKGLMGQIMPLYTIGIVLFILYTLFK 103 (152)
T ss_pred CCCCCchhhhHhHHHHHHHHHHHHHHHHH
Confidence 3444567789999999999988 465544
No 247
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=56.43 E-value=1.2e+02 Score=30.44 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNE 165 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLs---qRI~~vd~kld~~~e 165 (238)
..+.+.+.++--+|+.+...|+.-...+. .|++.+..++.....
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~ 315 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKR 315 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666444433 344444444443333
No 248
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=56.40 E-value=32 Score=29.36 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=28.0
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHhhHHhHH
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALTVAK---KHLTQRIQNLNDKVE 161 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~~tK---khLsqRI~~vd~kld 161 (238)
.-.++..+|.+.+-|..+.+..++.... .+|++|++.+...+.
T Consensus 87 ~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 87 YAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred eeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999998888776655432 344455555444443
No 249
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=55.94 E-value=55 Score=30.74 Aligned_cols=98 Identities=17% Similarity=0.276 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHL---TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhL---sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
-+.++++.....|+...+.|+..+.+| ..+|+.+..+.++...=...+++++...+..+.+-..=+..+..=-..+.
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 366677777777777777777666544 34444444455444444444445554444444443333333333223333
Q ss_pred hhhhhhhhhhHHHHHHHHHHHH
Q 026425 200 GKIDSLADKQDITNIGMYLLCN 221 (238)
Q Consensus 200 ~Ki~~ie~kQd~tn~GV~~Lc~ 221 (238)
..+..++.... +.-|=-.||.
T Consensus 298 ~~~~~l~~~~~-~l~GD~llaa 318 (344)
T PF12777_consen 298 EQIEELEEQLK-NLVGDSLLAA 318 (344)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHhc-ccHHHHHHHH
Confidence 34444433332 3344444433
No 250
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=55.92 E-value=97 Score=27.82 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=21.5
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 176 EACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
....++..|.+||+.|.+-|.+||.=|.
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888887664
No 251
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=55.90 E-value=17 Score=29.28 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD 169 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~ 169 (238)
++.+++..+...|.++.+.+.+++..+..+.+.+..++++..++...
T Consensus 66 g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~ 112 (133)
T PF06148_consen 66 GMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREE 112 (133)
T ss_dssp --------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888899999999999888888888888888877655443
No 252
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=55.69 E-value=84 Score=28.14 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=8.4
Q ss_pred HHHHHhhHHhHHHHHHHHHH
Q 026425 150 TQRIQNLNDKVEKQNEISKD 169 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~ 169 (238)
..|+-+|..|+|.+.|.-..
T Consensus 78 A~lvinlE~kvD~lee~fdd 97 (189)
T TIGR02132 78 ASLVINLEEKVDLIEEFFDD 97 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 253
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.69 E-value=93 Score=23.95 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q 026425 187 NLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLC 220 (238)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 220 (238)
|.+.+..-+..|-.+|..+|....-...-+..++
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333333
No 254
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=55.61 E-value=2.1e+02 Score=27.95 Aligned_cols=64 Identities=8% Similarity=0.160 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
++....+.|...+..+....++....+.++.+...++....++....++.+...++.+...+.+
T Consensus 253 s~n~m~~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e 316 (553)
T PRK15048 253 SVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQ 316 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333333333333
No 255
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=55.52 E-value=2.6e+02 Score=29.76 Aligned_cols=86 Identities=9% Similarity=0.040 Sum_probs=42.5
Q ss_pred eeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 026425 107 WWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEH 186 (238)
Q Consensus 107 wWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~ 186 (238)
-|-..-..|=+|.+=|..-+-...+..++.++.+.+....+ ...-+...-..|....+-.+++++.+.+++..++++..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (910)
T TIGR00833 557 AAIPECRANPVCSVAREIVQAADTVVSSAAKLADAAGQLAR-GIADVASALSQVSGLPNALDGIGTQLAQMRESAAGVQD 635 (910)
T ss_pred ccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777665544445555555555444433322 11112333333444444555555555555555555544
Q ss_pred hHHHHHH
Q 026425 187 NLKDLQS 193 (238)
Q Consensus 187 dv~~v~~ 193 (238)
-+..+..
T Consensus 636 ~~~~~~~ 642 (910)
T TIGR00833 636 LLNELSD 642 (910)
T ss_pred HHHHHHH
Confidence 4433333
No 256
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=55.46 E-value=10 Score=28.94 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=31.8
Q ss_pred HHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 026425 117 MYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 117 MyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~ 162 (238)
=|.||+..+. .++.+-++--+.|...=++|.+||+.|.+=||+
T Consensus 25 HY~~k~~~~~---~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 25 HYRSKRKTAA---SLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4778877664 356666666677777788899999998877764
No 257
>PF13514 AAA_27: AAA domain
Probab=55.43 E-value=2e+02 Score=31.19 Aligned_cols=164 Identities=18% Similarity=0.281 Sum_probs=0.0
Q ss_pred chhhhheecccccceeeccCCCcchHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcCCCeEEEeCCCCCcc
Q 026425 9 FQKILMLAGLGYTGTILVKDGKLPELLRELQSLVERLSKSGEQDNFTDAIKDQLNRLKFECQRASSGQIFVRNENSGGNA 88 (238)
Q Consensus 9 l~kv~iLvGAG~~GSvl~k~G~Lsd~~g~lq~~~k~~~k~g~~~~~~d~L~aQV~~L~~El~las~r~iTvvn~~sGg~~ 88 (238)
+|..++=+|+|+.+ |+++...|..-...+=|.....|....+..+++.+.++|.-+..++ ..|
T Consensus 114 lg~~Lf~agaG~~~--------l~~~~~~L~~ea~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~~~---------~~y 176 (1111)
T PF13514_consen 114 LGQLLFSAGAGLGS--------LSQVLKQLDKEADELFKPRGRKPEINQALKELKELERELREAEVRA---------AEY 176 (1111)
T ss_pred HHHHHHHhcccccc--------HHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhccH---------HHH
Q ss_pred eeehhhhhHhhhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHhhHHhHH--
Q 026425 89 TSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKH-----LTQRIQNLNDKVE-- 161 (238)
Q Consensus 89 ~~~ivpaA~vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkh-----LsqRI~~vd~kld-- 161 (238)
..+.- .+......+..+-+++..+...+..-.+- +-.+++.+..+|+
T Consensus 177 ~~l~~--------------------------~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l 230 (1111)
T PF13514_consen 177 QELQQ--------------------------ALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAEL 230 (1111)
T ss_pred HHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q ss_pred -HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 026425 162 -KQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIG 215 (238)
Q Consensus 162 -~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~G 215 (238)
+...+-..-.++...+...+......+..++.-+..|+.+++.+.....+-...
T Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~ 285 (1111)
T PF13514_consen 231 GEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHA 285 (1111)
T ss_pred CCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhH
No 258
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=55.31 E-value=1.5e+02 Score=26.13 Aligned_cols=69 Identities=10% Similarity=0.185 Sum_probs=49.8
Q ss_pred eeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 026425 108 WKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN 187 (238)
Q Consensus 108 WKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d 187 (238)
+.+||.+. ..|.++...+|..+|..+.++..+-.. .++.-+-|.+....+..++.=+. ++|+.+...+
T Consensus 58 f~~ls~~E------~~l~~~le~~g~~~d~~~~~~~~~~~~----~~~f~e~LkEy~~ya~slk~vlk--~r~~~q~~~e 125 (201)
T cd07622 58 FSEWSAIE------KEMGDGLQKAGHYMDSYAASIDNGLED----EELIADQLKEYLFFADSLRAVCK--KHELLQYDLE 125 (201)
T ss_pred HHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 46788888 699999999999999988888876544 35666777777777777776433 5555555444
Q ss_pred H
Q 026425 188 L 188 (238)
Q Consensus 188 v 188 (238)
.
T Consensus 126 ~ 126 (201)
T cd07622 126 K 126 (201)
T ss_pred H
Confidence 3
No 259
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=55.23 E-value=1.7e+02 Score=27.27 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhHHh----HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 140 EALTVAKKHLTQRIQNLNDK----VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~k----ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
++|+....++.+.|+.+..+ +-+.++....+.+++..+...++++..++.++.........+...+..+
T Consensus 17 ~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~ 89 (338)
T PF04124_consen 17 QSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEE 89 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455544443 3334555566666666666666666666666665555555555544433
No 260
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=55.22 E-value=1.1e+02 Score=24.50 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=10.6
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 026425 126 TAVSNLNKHLESVTEALTV 144 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~ 144 (238)
+-|.+|..+|..+...+..
T Consensus 6 ~~v~~I~~~i~~i~~~v~~ 24 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEE 24 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555533
No 261
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=55.08 E-value=1.8e+02 Score=26.95 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=35.2
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHhhHHhHHH
Q 026425 115 DLMYVTRKSMATAVSNLNKHLESVTEALTV-AKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 115 DlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~-tKkhLsqRI~~vd~kld~ 162 (238)
.+++..=.+..+.+..+.++++++.+.+-. .+++.-.||-.+.+.+=.
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~ 191 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVY 191 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 466677788999999999999999966655 444466777766666433
No 262
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=54.98 E-value=72 Score=30.16 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Q 026425 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (238)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (238)
.=|.-|...||.|-++|+++.|.-.+.+.+..+-..+++.....++.++.-+..|-..|. +-.+-+..+|+-..-+
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~--~rdeli~khGlVlv~~ 180 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK--QRDELIEKHGLVLVPD 180 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCeeeCCC
Confidence 347778899999999999999999999999888777787777777777777766666664 2233445566554433
No 263
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.94 E-value=1.5e+02 Score=28.73 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK 172 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~ 172 (238)
+....+...+.++.-.+.+.+.+..+.++|+.++.++.......+.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 152 LTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444445566666666666666666666665555554433
No 264
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=54.78 E-value=1.8e+02 Score=27.08 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=37.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 026425 132 NKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (238)
Q Consensus 132 ~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (238)
.++|++.-+.|.+.+.....++..|...+++.+.-...+++||.-++
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688888888888888888888888888888888888887776554
No 265
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.72 E-value=1.8e+02 Score=26.83 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQR 152 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqR 152 (238)
..|++..+.++..+++.+.+|...+++++++
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6899999999999999999999999988663
No 266
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=54.28 E-value=74 Score=22.40 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 159 KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 159 kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
-+++..++..+|.+++..=++-+..+...+..+.
T Consensus 16 ~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~ 49 (66)
T PF12352_consen 16 MADETEEIGAATLEDLRSQREQLKRVRDKLDDID 49 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554444444444444333333333
No 267
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=54.22 E-value=1.2e+02 Score=29.76 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 161 EKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 161 d~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
.+..++...+.++..+++.........+..+++.+..|+.++..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444455555554444444444444444444444444443
No 268
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=54.21 E-value=4.2 Score=33.48 Aligned_cols=60 Identities=23% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 026425 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (238)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (238)
+++.+..++++..+-...+..+|.+...+++.+...+..+...|..|+..+.++..++..
T Consensus 18 ~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~ 77 (138)
T PF06009_consen 18 RLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKP 77 (138)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555566666666666666666666666666666666666655543
No 269
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.03 E-value=2.5e+02 Score=28.36 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=21.1
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Q 026425 191 LQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (238)
Q Consensus 191 v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (238)
+...+..+...++.|+..|.--+..+..|+.
T Consensus 377 i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 377 IQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777777777777664
No 270
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.00 E-value=1.3e+02 Score=25.06 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=47.8
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (238)
..|++++..++|+...|-..==+.|-|=.+.|+.+.+--++++..-+..+.+=..+..|.=--|.....+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~i 97 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRII 97 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777766666667777777888888777887777777766665555554444444433
No 271
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.96 E-value=92 Score=23.34 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=12.7
Q ss_pred hhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 178 CDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
..+.+.+..+++.+......++.++..++
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 272
>PRK01919 tatB sec-independent translocase; Provisional
Probab=53.76 E-value=1.6e+02 Score=26.01 Aligned_cols=51 Identities=6% Similarity=0.216 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (238)
..|-.+..++++-+..+-..+...|.++..-++ +||..++.+..++...++
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~e-----~dElrk~~~~~e~~~~~v 73 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREIE-----LDELRKMKTDFESAARDV 73 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888887776552 344444444443333333
No 273
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=53.44 E-value=70 Score=33.48 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=57.1
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccc
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKK 227 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~ 227 (238)
.++.+..+-.+++.|+.+-.++.+=+++-+.|++.|..|++.+++.-..+.-++.- .|-. --.|-+||.|-.
T Consensus 73 es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~N---rq~v----~s~Ls~fVdd~i 144 (683)
T KOG1961|consen 73 ESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLEN---RQAV----ESKLSQFVDDLI 144 (683)
T ss_pred hhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHh---HHHH----HHHHHHHhcccc
Confidence 45678888999999999999999999999999999999999999888777766551 1111 135677777654
No 274
>PRK12805 flagellin; Provisional
Probab=53.38 E-value=1.8e+02 Score=26.57 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHHHH-hhhcC---CCeEEEeC
Q 026425 53 NFTDAIKDQLNRLKFEC-QRASS---GQIFVRNE 82 (238)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~las~---r~iTvvn~ 82 (238)
.+-.+++.+++.|.++| +++.+ ...-++.|
T Consensus 105 ~dr~ai~~Ei~~l~~~i~~~an~~~~nG~ylf~G 138 (287)
T PRK12805 105 EDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQ 138 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeeecCC
Confidence 45678999999999999 88863 35555554
No 275
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.33 E-value=1.1e+02 Score=23.85 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
++.|..|+.+-.+.+...+=||.+++++=..+..++++.++.-+.|+..=..+...|.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666665555544433
No 276
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=53.25 E-value=1.6e+02 Score=31.24 Aligned_cols=85 Identities=24% Similarity=0.298 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHL---TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhL---sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
|.+++-...+.+.+...+.+++..|++. .++.+.|--++++....-.+|+..+.+.+..++...+....++.=...|
T Consensus 534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777888888887777653 4555666666666666666666666666666666555555555555555
Q ss_pred hhhhhhhh
Q 026425 199 DGKIDSLA 206 (238)
Q Consensus 199 e~Ki~~ie 206 (238)
-.|+.++.
T Consensus 614 ~~kle~~k 621 (698)
T KOG0978|consen 614 KRKLERLK 621 (698)
T ss_pred HHHHHHhc
Confidence 55555443
No 277
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=53.23 E-value=2.9e+02 Score=28.88 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=42.9
Q ss_pred hhHHHhHhhHHH----HHHHHHHhh---HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 026425 115 DLMYVTRKSMAT----AVSNLNKHL---ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (238)
Q Consensus 115 DlMyVTkr~ms~----Av~sv~kqL---e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (238)
|+|+---..|+. .-.++.+-. +...+.+...-.+|.|.+|.-|.+++++..+...++.++..
T Consensus 385 ~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~ 453 (607)
T KOG0240|consen 385 DFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLD 453 (607)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566555555553 333344333 57788888888999999999999888888777777766543
No 278
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=52.87 E-value=93 Score=26.86 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
-++|..|=|.|...|....++...-.+=++.+.-=++-+.+|+..+
T Consensus 100 E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v 145 (159)
T PF05384_consen 100 EKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQV 145 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444445555555544444444444433433333334444444444
No 279
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=52.57 E-value=1e+02 Score=23.36 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 185 EHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
++|++..+.++..+..||+.+|.+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEar 72 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEAR 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888865
No 280
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=52.44 E-value=1.5e+02 Score=27.33 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHH-HHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQN-EISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~-eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
|-.+...+-..|+.|...-+-+...+.... .+.+.+++...++.+++.+..+.++..+++++.|-+-..++-
T Consensus 182 l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~i 254 (322)
T COG0598 182 LGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLI 254 (322)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555554444444443333 455666666777777777777777777666666655444443
No 281
>PRK15396 murein lipoprotein; Provisional
Probab=52.31 E-value=71 Score=24.64 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=17.3
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (238)
|+..++.|..|.|+...-....+.++...+++-.+
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556555544444444444444443333
No 282
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.87 E-value=1.9e+02 Score=26.48 Aligned_cols=78 Identities=12% Similarity=0.217 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 124 MATAVSNLNKHLESVTEALTV-----------AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~-----------tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
|+++.+.++..+|..+.++.. .-+....-++.+-.-+.+-. +++-++...++.+..-..|=+.+.
T Consensus 108 L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~----~~Q~~le~k~e~l~k~~~dr~~~~ 183 (243)
T cd07666 108 LADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRD----QIQAELDSKVEALANKKADRDLLK 183 (243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHH
Confidence 555555555555544444444 33333333333332222221 333445555555555555555666
Q ss_pred HHHHhhhhhhhhh
Q 026425 193 SMIYCLDGKIDSL 205 (238)
Q Consensus 193 ~~V~~Le~Ki~~i 205 (238)
.-|+.||.|++.-
T Consensus 184 ~ev~~~e~kve~a 196 (243)
T cd07666 184 EEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
No 283
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=51.52 E-value=1.1e+02 Score=28.60 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 139 TEALTVAKKHLTQR---IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 139 s~sL~~tKkhLsqR---I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
+..|+..-||+.+. |..-|.-|=+.-|.+-..-+||.+++.|-.+|..+++.|-..-..||.-++.+|.+-
T Consensus 84 s~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~ 157 (254)
T KOG2196|consen 84 SLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKL 157 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888775 455577888888888999999999999999999999999888888888888888653
No 284
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=50.98 E-value=2e+02 Score=27.13 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH----------HhhhhHHHhhh
Q 026425 122 KSMATAVSNLNKHLESVTEALTV-----AKKHLTQRIQNLNDKVEKQNEISKDIRKNVE----------EACDDLFKVEH 186 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~-----tKkhLsqRI~~vd~kld~~~eis~~i~~eV~----------~v~~d~~~i~~ 186 (238)
...++..+.++..+|+++..+=. .-+++-++|-++.+-.-+..++.-.++.-+. +.++.+..+.+
T Consensus 142 d~~ad~lE~~~~~ld~ls~~if~~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~~~~~~~~~~~~~~~ 221 (316)
T PRK11085 142 EQLADEIENIYSDLEKLSRVIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQAREILR 221 (316)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHH
Confidence 44566667777777777766643 1123334444444444333333322222111 11123444555
Q ss_pred hHHHHHHHHHhhhhhhhhh
Q 026425 187 NLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~i 205 (238)
|++++..-+..+..++..+
T Consensus 222 Di~~l~~~~~~~~~~~~~l 240 (316)
T PRK11085 222 DIESLLPHNESLFQKVNFL 240 (316)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5655555555555555443
No 285
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=50.89 E-value=2.4e+02 Score=27.32 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=24.2
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHH
Q 026425 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTV 144 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~ 144 (238)
++..+-.-=..|++-.+|+++|-|+=..++.-
T Consensus 197 i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~ 228 (412)
T PF04108_consen 197 ILKELHSLEQEMASLLESLTNHFDQCVTAVRH 228 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555589999999999999888777773
No 286
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.85 E-value=1.6e+02 Score=25.94 Aligned_cols=81 Identities=15% Similarity=0.070 Sum_probs=43.4
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH-HHHHHHHHHhhhhHHHhhhhHHHHHH
Q 026425 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS-KDIRKNVEEACDDLFKVEHNLKDLQS 193 (238)
Q Consensus 115 DlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis-~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (238)
|-|--+|+.|++++..+++.|..++..=..+-+-|+.=+..+.+-.+...++. .+-.++...+.+-+...-.++++++.
T Consensus 28 ~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~ 107 (198)
T cd07630 28 LKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSESEKD 107 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999987765432221122222222222222222211 12235556666666666666666655
Q ss_pred HH
Q 026425 194 MI 195 (238)
Q Consensus 194 ~V 195 (238)
+.
T Consensus 108 ~l 109 (198)
T cd07630 108 ML 109 (198)
T ss_pred HH
Confidence 54
No 287
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.84 E-value=2.4e+02 Score=28.65 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhH-------HHHHHHHHHHHHHH
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKV-------EKQNEISKDIRKNV 174 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kl-------d~~~eis~~i~~eV 174 (238)
|++-+.-+.++|+-+.+|+..++.|+ .+..|+.+..+++-
T Consensus 366 l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 366 LKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33344444445554444444444444 44445554444443
No 288
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=50.74 E-value=1.1e+02 Score=28.42 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcccccc
Q 026425 187 NLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGRT 230 (238)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~ 230 (238)
-...+...++..+.++..++....-+..-...+|+|.+-...++
T Consensus 310 f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~ 353 (370)
T PF02181_consen 310 FKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKM 353 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 36667888899999999999999999999999999996544333
No 289
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=50.74 E-value=2.2e+02 Score=26.75 Aligned_cols=8 Identities=38% Similarity=0.576 Sum_probs=3.5
Q ss_pred hhheeeee
Q 026425 100 ALGYGYMW 107 (238)
Q Consensus 100 avGYgYmw 107 (238)
|.|+.|.|
T Consensus 195 Aa~~Lc~W 202 (344)
T PF12777_consen 195 AAGSLCKW 202 (344)
T ss_dssp THHHHHHH
T ss_pred cchHHHHH
Confidence 44444444
No 290
>PHA02607 wac fibritin; Provisional
Probab=50.65 E-value=79 Score=31.76 Aligned_cols=115 Identities=14% Similarity=0.151 Sum_probs=69.3
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH---HH-----HHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK---QN-----EISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~---~~-----eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
=-+|..|--+|-|..+++-+-...++..+..=++.+..--+- +- +-..+...+|..++.+++....++..+.
T Consensus 40 dG~lNRa~v~VQ~NV~~ld~n~~~~~~kine~vd~vn~I~~~L~~~gD~~~i~qv~~n~~dI~~lk~~~~~~~~~l~~~~ 119 (454)
T PHA02607 40 DGSLNRAGVNVQKNVEQLDENTKKTKDKINEVVDDVNTIQENLDVIGDISVIDQINQNVADIEVLKKDVSDTTDKLAGTT 119 (454)
T ss_pred CcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 346777888888888888888888877766655554322111 10 1112223445555555555555555555
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccccccccccc
Q 026425 193 SMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGRTTERTI 235 (238)
Q Consensus 193 ~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~p~~~~ 235 (238)
..+..++.+|.......|-..+=|+.=.-|+...-+.-|...|
T Consensus 120 ~~~~~~~~~iG~~~p~~d~~~rTVr~di~~IK~elG~y~g~di 162 (454)
T PHA02607 120 NEVDEIEADIGVFNPEADPVTRTIRNDILWIKTELGAYPGFDI 162 (454)
T ss_pred hhHHHHHHhcCCcCcccCCCccchhhhHHHHHHHhccCCCCCC
Confidence 5566666666655566666666677666777766666666544
No 291
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.61 E-value=1.4e+02 Score=24.62 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (238)
..|++++..+++..+.+++.....-++. ...+.+-|++.......++
T Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~L~~y~~~~~s~k 106 (218)
T cd07596 60 GELGEALSKLGKAAEELSSLSEAQANQE---LVKLLEPLKEYLRYCQAVK 106 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHH
Confidence 4677777777777777777766554433 2334444444444444444
No 292
>PRK00846 hypothetical protein; Provisional
Probab=50.33 E-value=1.2e+02 Score=23.46 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
+.+--..|.-|+...++.+|+.++..-.-+.++..++.-+..+.+-++.+.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445566677777777777777766666777777776666666655553
No 293
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=50.16 E-value=3.3e+02 Score=28.61 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=15.0
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHH
Q 026425 121 RKSMATAVSNLNKHLESVTEALTVA 145 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe~Vs~sL~~t 145 (238)
...+.+=+.....+|++|.......
T Consensus 177 ~~~~~~~~~~~~~~l~~v~~~~~~~ 201 (670)
T KOG0239|consen 177 SLKLESDLGDLVTELEHVTNSISEL 201 (670)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777766665553
No 294
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=49.95 E-value=2e+02 Score=26.12 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHHH-hhhcCC--CeEEEe
Q 026425 53 NFTDAIKDQLNRLKFEC-QRASSG--QIFVRN 81 (238)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~las~r--~iTvvn 81 (238)
.+-++++.+++.|.+++ .++..+ ..-++.
T Consensus 105 ~~r~aia~e~~~l~~~i~~~~Nt~~~g~ylF~ 136 (287)
T PRK08073 105 KELKAIGAEIDQILKQVVYLANTKEQGRYVFG 136 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCeeeec
Confidence 33568999999999999 877632 444444
No 295
>PRK04654 sec-independent translocase; Provisional
Probab=49.87 E-value=1.5e+02 Score=27.01 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ 154 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~ 154 (238)
+.|-.+...+++-+..+-.....+|.++.+-++
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445666667777777766667777776666543
No 296
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.77 E-value=1.1e+02 Score=34.32 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH-HHHhhhhhhhhhhhhhHHHHHHHHHH
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS-MIYCLDGKIDSLADKQDITNIGMYLL 219 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~-~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (238)
.|....+++..+...+++.+.++.+....++++..+++.+++.+......++. .+. ++.|+..+...=+.-..-+.+.
T Consensus 960 ~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~ 1038 (1293)
T KOG0996|consen 960 DLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQP 1038 (1293)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhH
Confidence 34444556666777777778888888888888888888888888888887777 555 7777776665555555555443
No 297
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=49.69 E-value=3e+02 Score=30.36 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=67.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
-+.+++-|-+.-+-+...+++|.--=+.....+.+..+..+-...++.++......|+.++..-+..+++++.|+.++|.
T Consensus 279 ns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 279 NSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 44555666665555555555554444444444445555556666778888888888999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHH
Q 026425 208 KQDITNIGMYLLCNF 222 (238)
Q Consensus 208 kQd~tn~GV~~Lc~f 222 (238)
+-|.+.+-+.-|-+-
T Consensus 359 krd~al~dvr~i~e~ 373 (1265)
T KOG0976|consen 359 KRDMALMDVRSIQEK 373 (1265)
T ss_pred HHHHHHHhHHHHHHH
Confidence 999988888776553
No 298
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.66 E-value=1.5e+02 Score=24.40 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHhhHHhHHHHHHHHHH
Q 026425 125 ATAVSNLNKHLESVTEALT-----VAKKHLTQRIQNLNDKVEKQNEISKD 169 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~-----~tKkhLsqRI~~vd~kld~~~eis~~ 169 (238)
++.+.++-..|-++.-.+. ..+..|.++|+.+...|++..++...
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444445555555444444 67889999999999999999888887
No 299
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=49.60 E-value=87 Score=28.11 Aligned_cols=59 Identities=12% Similarity=0.285 Sum_probs=37.6
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh--HHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDD--LFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d--~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
|...|.++..|+...+.....+..|+.++..- +++++..+++++..|.+.+.||..+-+
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655555555555666655543 345777777777777777777776653
No 300
>PHA03395 p10 fibrous body protein; Provisional
Probab=49.60 E-value=77 Score=25.17 Aligned_cols=22 Identities=5% Similarity=0.264 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 026425 125 ATAVSNLNKHLESVTEALTVAK 146 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tK 146 (238)
.++++.+...++.+..++...+
T Consensus 10 r~dIkavd~KVdalQ~~V~~l~ 31 (87)
T PHA03395 10 RQDIKAVSDKVDALQAAVDDVR 31 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3455555555555555554444
No 301
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.37 E-value=97 Score=30.13 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 026425 140 EALTVAKKHLTQRIQN 155 (238)
Q Consensus 140 ~sL~~tKkhLsqRI~~ 155 (238)
+.|++-|.++++.|..
T Consensus 47 ~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 47 EELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 302
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=49.30 E-value=91 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=8.1
Q ss_pred HHHHhhHHhHHHHHHHHHHH
Q 026425 151 QRIQNLNDKVEKQNEISKDI 170 (238)
Q Consensus 151 qRI~~vd~kld~~~eis~~i 170 (238)
..|.....+++...+....+
T Consensus 48 ~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 48 EEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 303
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=49.05 E-value=59 Score=23.53 Aligned_cols=30 Identities=10% Similarity=0.406 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~ 164 (238)
|+|+.+..+..-..+..|||.+..++|+..
T Consensus 12 L~qmq~kFq~mS~~I~~riDeM~~RIDdLE 41 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRIDEMSSRIDDLE 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455555555555566777777777766553
No 304
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=49.04 E-value=2e+02 Score=26.71 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=30.5
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVE 161 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld 161 (238)
+.|..+-++-..++.++.+.++.|...++.....|+..-++++
T Consensus 127 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN 169 (322)
T TIGR02492 127 ALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEIN 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777778888888888888888877777766655444433
No 305
>PRK01156 chromosome segregation protein; Provisional
Probab=48.87 E-value=2.6e+02 Score=29.31 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHH
Q 026425 134 HLESVTEALTVAKKHLTQRIQNLND 158 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~vd~ 158 (238)
.++..++.+..+.+.+..+|..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~ei~~le~ 187 (895)
T PRK01156 163 SLERNYDKLKDVIDMLRAEISNIDY 187 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665555544
No 306
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=48.65 E-value=1e+02 Score=29.43 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=21.5
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 176 EACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
|++--|.+-+.+|++++++|+++-..|.
T Consensus 114 EAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 114 EAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4555577788999999999988766655
No 307
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=48.54 E-value=1.5e+02 Score=29.71 Aligned_cols=74 Identities=22% Similarity=0.419 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH--HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ--NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~--~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
++.++.+.++-..+...+..+ ++|..|.+.+.+.+++. .++...++.++.+.-.++..+..+++........|+
T Consensus 28 ~eV~~~I~~~y~df~~~~~~~-~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~ 103 (593)
T PF06248_consen 28 EEVHSMINKKYSDFSPSLQSA-KDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE 103 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445554444444 34556666666666333 225566677777777777777777776666666555
No 308
>PRK11032 hypothetical protein; Provisional
Probab=48.50 E-value=69 Score=27.77 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH----hhhhHHHhhhhHHHHHH------HHHhhh-----
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEE----ACDDLFKVEHNLKDLQS------MIYCLD----- 199 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~----v~~d~~~i~~dv~~v~~------~V~~Le----- 199 (238)
|++|.+.|......|..-|+.....+.+ ....|++|+.. +++|++++...+..=.+ ....++
T Consensus 12 l~~v~~~l~~~~~~l~~~ve~a~~~~~~---~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~~~~~s~~~~~i~~slw~ 88 (160)
T PRK11032 12 VASLTERLRNGERDIDALVESARKRVDA---AGELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVFMRVIKESLWQ 88 (160)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 5666666666665555545554444444 44445666543 56677776654322100 011222
Q ss_pred --------hhhhhhhhhhHHHHHHHHHHHHHh
Q 026425 200 --------GKIDSLADKQDITNIGMYLLCNFV 223 (238)
Q Consensus 200 --------~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (238)
.+++-.|-.||+..+|+|.=-+.+
T Consensus 89 ~L~~ItDrTqvEw~el~~dl~h~g~Y~sGEvv 120 (160)
T PRK11032 89 ELADITDKTQLEWREVFQDLNHHGVYHSGEVV 120 (160)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhcCeeecceee
Confidence 234444566788778887644433
No 309
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=48.35 E-value=2.7e+02 Score=29.12 Aligned_cols=86 Identities=14% Similarity=0.259 Sum_probs=54.1
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 026425 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (238)
+.-|..-|.++-+|||+--.-+... +|=.+.+.-++-+|.|....++.+.+.++.-..+|..+++...+-|...-.
T Consensus 416 ~~~~~e~~~~L~qqlD~kd~~~n~~----sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~ 491 (607)
T KOG0240|consen 416 EDILTERIESLYQQLDQKDDQINKQ----SQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLT 491 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777888888888776666543 444555556666667777777766666666666666666666555555555
Q ss_pred hhhhhhhhhH
Q 026425 201 KIDSLADKQD 210 (238)
Q Consensus 201 Ki~~ie~kQd 210 (238)
.+.++..+-+
T Consensus 492 al~el~~~~~ 501 (607)
T KOG0240|consen 492 ALEELAVNYD 501 (607)
T ss_pred HHHHHHHhhh
Confidence 5555544433
No 310
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.21 E-value=1.3e+02 Score=23.50 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=22.2
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 155 NLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 155 ~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
.|..|+.+..+.+...+-||.+++++=.....+++.++.-=..|+.+-..+
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qL 58 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444445555555555444444444444333333333333333
No 311
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=48.12 E-value=78 Score=33.09 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=25.1
Q ss_pred cccchhHHHhHh--hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 026425 111 LSFADLMYVTRK--SMATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (238)
Q Consensus 111 ws~sDlMyVTkr--~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~ 155 (238)
|.++|.-|...+ +.-+|+..+..+++|+.+-+..+|.-|.+=.++
T Consensus 12 i~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~ 58 (683)
T PF08580_consen 12 ILLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREG 58 (683)
T ss_pred cccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444454444 223344445557777777777777766654333
No 312
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=48.08 E-value=1.1e+02 Score=22.74 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026425 136 ESVTEALTVAKKHLTQRIQN 155 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~ 155 (238)
+++.+.+.+++.-+.+-|+.
T Consensus 6 ~~i~~~v~~v~~im~~Ni~~ 25 (89)
T PF00957_consen 6 EQIQEQVEEVKNIMRENIDK 25 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333
No 313
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=48.07 E-value=1.2e+02 Score=24.84 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=25.7
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQR 152 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqR 152 (238)
-|+++-++++.+.+|+.++++.+++-|.++..=
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~el 34 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAEL 34 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888888888877776554
No 314
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=47.97 E-value=99 Score=27.67 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=42.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 026425 131 LNKHLESVTEALTVAKKHLTQRIQNL---NDKVEKQNEISKDIRKNVEEACDDLFKVEH 186 (238)
Q Consensus 131 v~kqLe~Vs~sL~~tKkhLsqRI~~v---d~kld~~~eis~~i~~eV~~v~~d~~~i~~ 186 (238)
+.-.++|+..++..+|+=++.-|+.+ |+|||.+..++..+.-++.-++....+++.
T Consensus 127 ~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~ 185 (190)
T COG5143 127 IQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNL 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44457888888888888888888877 778888988888888877766655554443
No 315
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=47.34 E-value=2.5e+02 Score=26.39 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 026425 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (238)
Q Consensus 137 ~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (238)
.--+.|....+.+.+.+..+...-++..+-.+..+++..++...-.+.-.+...++.-...++...++++..-++++.=+
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556666667777777666666655555566666666655556666666666666666666666666666665555
Q ss_pred HHH
Q 026425 217 YLL 219 (238)
Q Consensus 217 ~~L 219 (238)
..|
T Consensus 130 ~~L 132 (314)
T PF04111_consen 130 DRL 132 (314)
T ss_dssp HCH
T ss_pred HHH
Confidence 444
No 316
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.32 E-value=2e+02 Score=27.62 Aligned_cols=104 Identities=13% Similarity=0.262 Sum_probs=73.9
Q ss_pred hHhhHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH--------------------------------HHH
Q 026425 120 TRKSMA-TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ--------------------------------NEI 166 (238)
Q Consensus 120 Tkr~ms-~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~--------------------------------~ei 166 (238)
.++++. |+...++.+|.+.|...+...-..-.||.+-+.+-.+- .+.
T Consensus 133 ~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~ 212 (305)
T KOG0809|consen 133 SERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEV 212 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHH
Confidence 456666 88889999999999999988877777776655432111 122
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHH----HHHHHHHHHh
Q 026425 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN----IGMYLLCNFV 223 (238)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn----~GV~~Lc~f~ 223 (238)
+..=.+||+.+...+.....=++.+..+|-.=+.=+|+|.+|-+-|+ .|..-|..+-
T Consensus 213 ~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe 273 (305)
T KOG0809|consen 213 VREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE 273 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH
Confidence 22233568888888888778888888888888889999988766554 5666676644
No 317
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=47.31 E-value=1.8e+02 Score=25.01 Aligned_cols=53 Identities=17% Similarity=0.361 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
..+..-..+|..||..++..+.+.....+.++||...++--+.....-+..++
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777788888877777777777777777765555555554443
No 318
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=47.14 E-value=1.3e+02 Score=31.72 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=36.8
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 134 HLESVTEAL---TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 134 qLe~Vs~sL---~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
-++.||..| ++-|.+|.+-|+.+.-|+++++....+-|.|+..++..+++.+...+.+
T Consensus 87 I~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 87 ILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 344455443 3445677777888888888887777776777766666666555444443
No 319
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=47.13 E-value=1.4e+02 Score=24.77 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=17.5
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
++|+......+++-...+++++..+..++..+.+.+.+
T Consensus 47 q~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 47 QEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333444444444445555555555555544433
No 320
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.88 E-value=1.2e+02 Score=31.35 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=52.3
Q ss_pred ccchhHHHhHhhHHHHH------HHHHHhhHHHHHHHHHHHHHHHH----------HHHhhHHhHHHHHHHHHHHHHHHH
Q 026425 112 SFADLMYVTRKSMATAV------SNLNKHLESVTEALTVAKKHLTQ----------RIQNLNDKVEKQNEISKDIRKNVE 175 (238)
Q Consensus 112 s~sDlMyVTkr~ms~Av------~sv~kqLe~Vs~sL~~tKkhLsq----------RI~~vd~kld~~~eis~~i~~eV~ 175 (238)
+..|.+|-..+.|++.+ ..+.+.|+..+..|..+..+|.. |++.+..+|.....+.+--.-.+.
T Consensus 242 ~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~ 321 (557)
T COG0497 242 SALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIE 321 (557)
T ss_pred hHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 34566666666665333 34555566666666666555554 555555666555555554444455
Q ss_pred HhhhhHHHhhhhHHHHHHH---HHhhhhhhhhhhh
Q 026425 176 EACDDLFKVEHNLKDLQSM---IYCLDGKIDSLAD 207 (238)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~---V~~Le~Ki~~ie~ 207 (238)
++-.-..++..++..+... ...||.++..+..
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~ 356 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKA 356 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 5555555555555555433 3445555554443
No 321
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.86 E-value=1.8e+02 Score=24.72 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=4.1
Q ss_pred HHHHhhhcC
Q 026425 41 LVERLSKSG 49 (238)
Q Consensus 41 ~~k~~~k~g 49 (238)
++++|++.|
T Consensus 7 ~v~~Le~~G 15 (177)
T PF07798_consen 7 FVKRLEAAG 15 (177)
T ss_pred HHHHHHHCC
Confidence 345554443
No 322
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.82 E-value=1.1e+02 Score=29.24 Aligned_cols=39 Identities=15% Similarity=0.041 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhcCCCCcchHHHHHHHHHH------HHHHhhhcCCCeE
Q 026425 37 ELQSLVERLSKSGEQDNFTDAIKDQLNRL------KFECQRASSGQIF 78 (238)
Q Consensus 37 ~lq~~~k~~~k~g~~~~~~d~L~aQV~~L------~~El~las~r~iT 78 (238)
.+..++|+|.+. .=..+.|..+..=| .+||+.|..|..|
T Consensus 4 li~~AVkFL~~~---kVr~aPli~kr~FLksKGLT~eEI~eAfk~~gi 48 (300)
T KOG2629|consen 4 LIENAVKFLQNP---KVRDAPLIKKREFLKSKGLTEEEIQEAFKRDGI 48 (300)
T ss_pred HHHHHHHHhcCc---ccccchHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 467888888742 21123345555555 3677877766333
No 323
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=46.67 E-value=3.6e+02 Score=28.05 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhHHhHHHH
Q 026425 143 TVAKKHLTQRIQNLNDKVEKQ 163 (238)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~ 163 (238)
..=|+|...||..|..+|-+.
T Consensus 42 ~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 42 KEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666554
No 324
>PRK09343 prefoldin subunit beta; Provisional
Probab=46.65 E-value=76 Score=25.73 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=11.7
Q ss_pred HhhHHHHHHHHHHhhHHHH
Q 026425 121 RKSMATAVSNLNKHLESVT 139 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe~Vs 139 (238)
|....+|.+.+.+.+|-..
T Consensus 66 ~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 66 KVDKTKVEKELKERKELLE 84 (121)
T ss_pred hccHHHHHHHHHHHHHHHH
Confidence 3466777666666665544
No 325
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.60 E-value=3.3e+02 Score=32.24 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=23.1
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHhhHHhHHH
Q 026425 115 DLMYVTRKSMATAVSNLNKHLESVTE---ALTVAKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 115 DlMyVTkr~ms~Av~sv~kqLe~Vs~---sL~~tKkhLsqRI~~vd~kld~ 162 (238)
+.++.-|-.+..-+..+..+++...+ .+...++.+.+.++.+.+.+++
T Consensus 897 ~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~ 947 (1930)
T KOG0161|consen 897 ERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEE 947 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554443 3444444444444444444443
No 326
>PLN02320 seryl-tRNA synthetase
Probab=46.59 E-value=1.2e+02 Score=30.65 Aligned_cols=96 Identities=18% Similarity=0.308 Sum_probs=52.9
Q ss_pred eeeccccchhHHHhHhhHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 026425 107 WWKGLSFADLMYVTRKSMATAVSNLNKH-----LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (238)
Q Consensus 107 wWKGws~sDlMyVTkr~ms~Av~sv~kq-----Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (238)
-||- .-|+=|. |.|......++.+- +|++- ++-..+|.+..+++.+.. +.++++++|+.. .-.++.
T Consensus 62 ~~~~--mlD~k~i-r~n~~~v~~~l~~R~~~~~vd~l~-~ld~~~r~~~~~~~~lr~---ern~~sk~i~~~--~~~~~~ 132 (502)
T PLN02320 62 QWKA--AIDFKWI-RDNKEAVAINIRNRNSNANLELVL-ELYENMLALQKEVERLRA---ERNAVANKMKGK--LEPSER 132 (502)
T ss_pred cccc--ccCHHHH-HhCHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh--hCCCCH
Confidence 3775 3566555 55655555555443 33332 234445666666665544 456677777652 223445
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 026425 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (238)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (238)
+.+..+++.+.+-+..||.++..++.+...
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666655443
No 327
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=46.27 E-value=2e+02 Score=25.11 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=46.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhH-----HHHHHHHHHHHHHHHHhhhhHHHhhhh----HHHHHHHHHhhhhhh
Q 026425 132 NKHLESVTEALTVAKKHLTQRIQNLNDKV-----EKQNEISKDIRKNVEEACDDLFKVEHN----LKDLQSMIYCLDGKI 202 (238)
Q Consensus 132 ~kqLe~Vs~sL~~tKkhLsqRI~~vd~kl-----d~~~eis~~i~~eV~~v~~d~~~i~~d----v~~v~~~V~~Le~Ki 202 (238)
-++|..--..|+.||.+|.+.|++-..-+ +.+.-.-...-..|+|+...|+.|..| +..+++.-...+.=|
T Consensus 6 ~~kL~D~D~~IqqaK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eFi 85 (157)
T PF04778_consen 6 DKKLTDNDNEIQQAKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEFI 85 (157)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444445566777777777776655443 233333344456677777777777655 444555555555555
Q ss_pred hhhhhhhHHH
Q 026425 203 DSLADKQDIT 212 (238)
Q Consensus 203 ~~ie~kQd~t 212 (238)
.....+++|+
T Consensus 86 ~~~K~NpnY~ 95 (157)
T PF04778_consen 86 NKNKNNPNYA 95 (157)
T ss_pred hhccCCccHH
Confidence 5555666666
No 328
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.23 E-value=1e+02 Score=31.39 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=47.1
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 026425 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (238)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (238)
+.|.+|+.-=|...+.-.+..+.|.++|++++.--...=--|...++.-..|+.||=+|--||...
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeil 402 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEIL 402 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888887777777777788888888888874434444556667777777777777777666543
No 329
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=46.11 E-value=1e+02 Score=27.49 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
.+++++++++.+++.+...++.+.+.|.-
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 46788999999999999999999998863
No 330
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=45.94 E-value=1.3e+02 Score=28.17 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=23.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~ 162 (238)
+....|.|||=-+.|.+..++|.+-++.+..|++.
T Consensus 125 vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 125 VKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456667777777777777777777766666554
No 331
>PRK10869 recombination and repair protein; Provisional
Probab=45.81 E-value=1.2e+02 Score=30.46 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=49.0
Q ss_pred ccchhHHHhHhhHHHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 026425 112 SFADLMYVTRKSMATA------VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (238)
Q Consensus 112 s~sDlMyVTkr~ms~A------v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (238)
+..|.+.-..+.|+.. ...+...|++++..|..+...|....+.++-.=++..+ +++.+..++.=-.+.|
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~----ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAE----LEQRLSKQISLARKHH 316 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH----HHHHHHHHHHHHHHhC
Confidence 4456666666776544 35577777788888888888887777766533222222 2333333332223344
Q ss_pred hhHHHHHHHHHhhhhhhhhhh
Q 026425 186 HNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie 206 (238)
.+++.|-..-..++.+++.++
T Consensus 317 ~~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 317 VSPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 455555444444444444433
No 332
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.79 E-value=2e+02 Score=24.84 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=28.1
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
..+++..++..+......+..++..+..|+.||..+..+.+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777777777766554
No 333
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=45.62 E-value=1.9e+02 Score=26.09 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHhhHHh-------HHHHHHHHHHHHHH--H----HHhhhhHHHhhhhH
Q 026425 123 SMATAVSNLNKHLESVTEALTVA-KKHLTQRIQNLNDK-------VEKQNEISKDIRKN--V----EEACDDLFKVEHNL 188 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~t-KkhLsqRI~~vd~k-------ld~~~eis~~i~~e--V----~~v~~d~~~i~~dv 188 (238)
+..+.+..+.++++++.+.+-.. +++...||-++... +..+.++...+... . .+.+..+..+.+++
T Consensus 146 ~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~~ 225 (318)
T TIGR00383 146 SYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDHI 225 (318)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHH
Confidence 44556677777777777766432 22333334433333 34444444333221 1 22333344455567
Q ss_pred HHHHHHHHhhhhhhhhhhhh-----hHHHHHHHHHH---------HHHhh---ccccc-ccccc
Q 026425 189 KDLQSMIYCLDGKIDSLADK-----QDITNIGMYLL---------CNFVD---GKKGR-TTERT 234 (238)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie~k-----Qd~tn~GV~~L---------c~f~~---~~~~~-~p~~~ 234 (238)
+.+.+.+..+..+++++.+. .+.+|+-++.| ..|+. |-+-+ ||+..
T Consensus 226 ~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~ 289 (318)
T TIGR00383 226 LSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELN 289 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCcccc
Confidence 77777777777777666532 22344444433 44554 33444 88865
No 334
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.50 E-value=2.4e+02 Score=25.66 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=45.1
Q ss_pred HHHhHhhHHHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 117 MYVTRKSMATAVSNLNKHLESVTE-----ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 117 MyVTkr~ms~Av~sv~kqLe~Vs~-----sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
+--+||.|+.+.+.+++.+.+++. .|+.+-++|...++.+.+-...|. ..++..+.+-+..+-.|+..|
T Consensus 44 lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl~~~QA------~~d~~tl~d~L~~~~~~~~~v 117 (230)
T cd07625 44 VSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDIDSIQA------TVDMATLYDGLEWISRDAYVV 117 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999988875 456777788877777666544332 233444444444444444444
Q ss_pred H
Q 026425 192 Q 192 (238)
Q Consensus 192 ~ 192 (238)
+
T Consensus 118 K 118 (230)
T cd07625 118 K 118 (230)
T ss_pred H
Confidence 4
No 335
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=45.46 E-value=2.9e+02 Score=29.64 Aligned_cols=83 Identities=18% Similarity=0.332 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhhHHhHHHHHHHH-------HHHHHHHHHhhhhHHHhhhhHHHHHH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKH---LTQRIQNLNDKVEKQNEIS-------KDIRKNVEEACDDLFKVEHNLKDLQS 193 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkh---LsqRI~~vd~kld~~~eis-------~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (238)
+.+.-..+-.|++-+-++|.+...| |..=++.|--+||+-.... ..++++.+-....++.+++-.+.-..
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555677888887777766543 4445555555555444444 44444444444444444444444444
Q ss_pred HHHhhhhhhhhhh
Q 026425 194 MIYCLDGKIDSLA 206 (238)
Q Consensus 194 ~V~~Le~Ki~~ie 206 (238)
-|+-|-+||+.++
T Consensus 393 ki~~Lq~kie~Le 405 (775)
T PF10174_consen 393 KINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555544444
No 336
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=45.40 E-value=2.4e+02 Score=25.59 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=32.5
Q ss_pred cccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 026425 111 LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (238)
Q Consensus 111 ws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~ 155 (238)
|||+. =|.+.+.+.|.++-++++.|+..+..-|..+..-...
T Consensus 70 WsF~s---~~~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~~ 111 (209)
T COG5124 70 WSFKS---QTLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKAT 111 (209)
T ss_pred Eecch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 45654 3899999999999999999998888777666655433
No 337
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.29 E-value=82 Score=26.36 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhh
Q 026425 186 HNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie 206 (238)
..+.++..-+..|+.||..+.
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444333
No 338
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.24 E-value=87 Score=25.87 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (238)
..|.+|-..==|-+.++-|.|+.--.+|+++.++|.--|.+..+|...++
T Consensus 57 EeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~ 106 (120)
T KOG4559|consen 57 EEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTD 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 35677777777778888888888778888888887777777666666554
No 339
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.20 E-value=4.9e+02 Score=29.96 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHH-hhhc
Q 026425 55 TDAIKDQLNRLKFEC-QRAS 73 (238)
Q Consensus 55 ~d~L~aQV~~L~~El-~las 73 (238)
.+.+...++..++=+ .+..
T Consensus 232 i~~m~~~l~~~r~t~~~~~~ 251 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRV 251 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 456777777777766 4443
No 340
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.04 E-value=99 Score=27.77 Aligned_cols=95 Identities=23% Similarity=0.331 Sum_probs=47.1
Q ss_pred hhhhheeeeeeeccccchhHHHhH------hhHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHhhHHhH
Q 026425 98 LGALGYGYMWWKGLSFADLMYVTR------KSMATAVSNLNKHLESVTEALTV-----------AKKHLTQRIQNLNDKV 160 (238)
Q Consensus 98 vGavGYgYmwWKGws~sDlMyVTk------r~ms~Av~sv~kqLe~Vs~sL~~-----------tKkhLsqRI~~vd~kl 160 (238)
+|.-|-.| -=+|-.||. |+ -.|..-.+.+-+.|+.+...... .|++|.|=++=-..+|
T Consensus 74 lG~~~~s~-~~~gTdfS~----~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql 148 (195)
T PF12761_consen 74 LGRGGKSY-KEKGTDFSA----TEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQL 148 (195)
T ss_pred hccccCCC-CCCCCCCCC----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 45555545 457877876 32 12333334444444444443332 3555555444333333
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 161 EKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 161 d~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
.+..+-......++..+++||+.|...|+-+..-...
T Consensus 149 ~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~ 185 (195)
T PF12761_consen 149 RELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSS 185 (195)
T ss_pred HhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332212223345777777777777777766655543
No 341
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.88 E-value=71 Score=34.65 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=28.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 026425 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (238)
Q Consensus 131 v~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (238)
=-|||++=-++|..-+..|++||+.+.+++-.+++..+.+....
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~ 481 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQR 481 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHH
Confidence 34667777777777777777777777777766655544444433
No 342
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=44.85 E-value=4.9e+02 Score=29.34 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
...++.++.+++..+......+..++.....++.++.+.+.+-
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666655555555554443
No 343
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=44.84 E-value=1.2e+02 Score=31.13 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 026425 123 SMATAVSNLNKHLE------SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (238)
Q Consensus 123 ~ms~Av~sv~kqLe------~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (238)
.+.++|.+....|. .+.+.|..+.++|.. +...|.++.+..+.....-.+|.++...+.+
T Consensus 222 kl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~-~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~ 287 (557)
T COG0497 222 KLAEAIQNALELLSGEDDTVSALSLLGRALEALED-LSEYDGKLSELAELLEEALYELEEASEELRA 287 (557)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-hhccChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666664 367777777777753 4445556555555555544555444444333
No 344
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=44.70 E-value=1.7e+02 Score=23.87 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=42.0
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 026425 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~ 164 (238)
|.|-+--.|+.+..-+..+.+.|+.+.+++..-...+-++|...|+.+|...
T Consensus 3 ~~~~l~~~~~el~~m~~~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~ 54 (212)
T TIGR02135 3 FDEELKELREELLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALE 54 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHH
Confidence 4556677888899999999999999999998777777888888887777664
No 345
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=44.62 E-value=2.1e+02 Score=24.73 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhHHhHHH
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKK---HLTQRIQNLNDKVEK 162 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKk---hLsqRI~~vd~kld~ 162 (238)
.+.+-++.+-+++++....+...|. .|..||+.+-.+.+.
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544444443333 344445554444443
No 346
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=44.60 E-value=2.9e+02 Score=28.52 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=27.8
Q ss_pred heecccccceeeccCCCcchHHHHHHHHHHHhhhcCCCC
Q 026425 14 MLAGLGYTGTILVKDGKLPELLRELQSLVERLSKSGEQD 52 (238)
Q Consensus 14 iLvGAG~~GSvl~k~G~Lsd~~g~lq~~~k~~~k~g~~~ 52 (238)
.|+-.||-+.+-.|+=+.|. ..+|+..||++---=||.
T Consensus 116 yL~engfd~pis~k~l~~PS-~k~F~~IFK~LY~~lDp~ 153 (622)
T COG5185 116 YLKENGFDIPISIKFLKQPS-QKGFIIIFKWLYLRLDPG 153 (622)
T ss_pred HHHHcCCCcchhHHHhcCCc-cccHHHHHHHHHhccCCC
Confidence 45667888888888766666 678888998876554655
No 347
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.43 E-value=47 Score=33.46 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=7.3
Q ss_pred hhhHHHhhhhHHHHHHHH
Q 026425 178 CDDLFKVEHNLKDLQSMI 195 (238)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V 195 (238)
+.+++....+++.|+.-+
T Consensus 103 e~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333
No 348
>PRK06696 uridine kinase; Validated
Probab=44.41 E-value=22 Score=30.64 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=22.2
Q ss_pred HHHHHHHHHHH-hhhcCCCeEE-EeCCCCCcceeeh
Q 026425 59 KDQLNRLKFEC-QRASSGQIFV-RNENSGGNATSLM 92 (238)
Q Consensus 59 ~aQV~~L~~El-~las~r~iTv-vn~~sGg~~~~~i 92 (238)
.+++..|++++ ...+.+|..| +.|.||.++|.+.
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 35678888888 5455555554 6787886665543
No 349
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.13 E-value=2.3e+02 Score=25.47 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH-HhhhhHHHHHHHHHhhhh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF-KVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~-~i~~dv~~v~~~V~~Le~ 200 (238)
-.+.++..+++++++.+++-...--+.. -+.+-.+|..+.++-.++++=. +.-+ -+..++..+...+...+.
T Consensus 87 ~~l~~~l~~~s~~~~~~s~~~~~~a~~~---~~~vlE~Lk~~~d~l~S~r~lf----~R~~k~~~~~i~~l~~ri~~~~~ 159 (246)
T cd07597 87 GDINEGLSSLSKHFQLLSDLSEDEARAE---EDGVLEKLKLQLDLLVSLRDLF----ERHEKLSLNNIQRLLKRIELNKK 159 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHH----HHHHhcccccHHHHHHHHHHHHH
Confidence 3577788889999998888776533333 2344555555555555554322 2222 355677777777888888
Q ss_pred hhhhhhhh
Q 026425 201 KIDSLADK 208 (238)
Q Consensus 201 Ki~~ie~k 208 (238)
|+.++..+
T Consensus 160 kl~~l~~~ 167 (246)
T cd07597 160 KLESLRAK 167 (246)
T ss_pred HHHHhhcC
Confidence 88877555
No 350
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=44.04 E-value=1.3e+02 Score=22.09 Aligned_cols=14 Identities=7% Similarity=0.199 Sum_probs=5.1
Q ss_pred hhhHHHhhhhHHHH
Q 026425 178 CDDLFKVEHNLKDL 191 (238)
Q Consensus 178 ~~d~~~i~~dv~~v 191 (238)
..++.++..||+.+
T Consensus 16 ~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 16 NSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 351
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=44.03 E-value=2.1e+02 Score=33.51 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=24.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 026425 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~ 164 (238)
.=+.+|-.+....-.+-.++|+.+.+||+.|.+.+...+
T Consensus 780 ~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk 818 (1822)
T KOG4674|consen 780 LLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLK 818 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555556777788888888877776655443
No 352
>PRK10807 paraquat-inducible protein B; Provisional
Probab=43.96 E-value=92 Score=31.52 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 026425 122 KSMATAVSNLNKH-LESVTEALTVAKKHLTQRIQNLNDKVE 161 (238)
Q Consensus 122 r~ms~Av~sv~kq-Le~Vs~sL~~tKkhLsqRI~~vd~kld 161 (238)
+++++.++.+.+= ||++-+.+.++-+++.+-+.+++..++
T Consensus 420 ~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~ 460 (547)
T PRK10807 420 QKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLD 460 (547)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443332 344455555555555555556655554
No 353
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.91 E-value=1.7e+02 Score=31.23 Aligned_cols=83 Identities=12% Similarity=0.255 Sum_probs=48.7
Q ss_pred eccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH---------HHHHHHHHHhhh
Q 026425 109 KGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS---------KDIRKNVEEACD 179 (238)
Q Consensus 109 KGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis---------~~i~~eV~~v~~ 179 (238)
-.-.||+=||-| -+-+-+.++.|++.++..|+..+++|-+.. +++..+-.+..+ ...+.+|.++++
T Consensus 54 ln~~fSv~~~tS---as~~s~~ia~q~~~L~q~lr~ldrqLh~qv--~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs 128 (797)
T KOG2211|consen 54 LNTLFSVQMMTS---ASKESNRIATQCDDLTQKLRELDRQLHAQV--LKRHMALLAQATEELFEDLELRSLLVKVAELQS 128 (797)
T ss_pred ccchhhhhhHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344577777532 233455688888888888888888886543 222222111111 234456777777
Q ss_pred hHHHhhhhHHHHHHHHH
Q 026425 180 DLFKVEHNLKDLQSMIY 196 (238)
Q Consensus 180 d~~~i~~dv~~v~~~V~ 196 (238)
.+.+|..|++.....++
T Consensus 129 ~i~riknd~~epyk~i~ 145 (797)
T KOG2211|consen 129 EIKRIKNDNKEPYKIIW 145 (797)
T ss_pred HHHHHHHhhhhHHHHHH
Confidence 77777777766544443
No 354
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.83 E-value=1.4e+02 Score=28.87 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=9.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Q 026425 126 TAVSNLNKHLESVTEALTVAKKH 148 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tKkh 148 (238)
...+.+.+++++..+.+...++.
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333
No 355
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=43.65 E-value=99 Score=21.99 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=11.6
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVE 175 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~ 175 (238)
++.+.|+.+..++++..+-.+..+.++.
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333333
No 356
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.60 E-value=2.2e+02 Score=24.68 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=41.0
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (238)
++..+|+.|+.+|.....+...+-+.-.++..|+..+|.-+..+=..=.+|+..|..+...-+....+.
T Consensus 18 e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~ 86 (200)
T cd07624 18 KMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAAL 86 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 345667778888877777777777777777777777666555543333334444444443333333333
No 357
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=43.57 E-value=1.6e+02 Score=23.04 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ 154 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~ 154 (238)
+.+...++.+-+....+-+.|..+...|+.=++
T Consensus 43 ~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~ 75 (113)
T PF02520_consen 43 AQVQAQKEEVRKNVTAVISNLSSAFAKLSAILD 75 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333333333333333333333333
No 358
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=43.51 E-value=3.3e+02 Score=30.03 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
|-|.|-|...-.++..+.++++.+...+. -+|+++...+.+. .+++++-..|+..+++|+.+=...+..+
T Consensus 109 riLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~l-------e~eLsAk~~eIf~~~~~L~nk~~~lt~~ 181 (1265)
T KOG0976|consen 109 RILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKL-------EDELSAKAHDIFMIGEDLHDKNEELNEF 181 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHhhhhHHHHHHHHHHhhhhhHHhHH
Confidence 34566676666666666666655543333 3455555554433 3445555555555555555544444444
Q ss_pred hhhh
Q 026425 199 DGKI 202 (238)
Q Consensus 199 e~Ki 202 (238)
+..+
T Consensus 182 ~~q~ 185 (1265)
T KOG0976|consen 182 NMEF 185 (1265)
T ss_pred HHHH
Confidence 4333
No 359
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=43.49 E-value=92 Score=30.30 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=18.7
Q ss_pred HHhhHHHHHHHHH--HHHHHHHHHHhhHHhHHHHHHHHHH
Q 026425 132 NKHLESVTEALTV--AKKHLTQRIQNLNDKVEKQNEISKD 169 (238)
Q Consensus 132 ~kqLe~Vs~sL~~--tKkhLsqRI~~vd~kld~~~eis~~ 169 (238)
+.||.++++++.. ....|.+-++.++.-++....++.+
T Consensus 306 s~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~d 345 (370)
T PLN03094 306 SEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISSD 345 (370)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555 4445555555555444444333333
No 360
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=43.42 E-value=92 Score=32.43 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (238)
++.+|..++++.+..++.+|.+...-..+. -..+..=+.++...++.|-..++.+=.||
T Consensus 256 sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q---------------------~~aL~~L~~qL~nnF~AISssI~dIy~RL 314 (610)
T PF01601_consen 256 SFNKAIGNIQLGFTTTASALNKIQDVVNQQ---------------------GQALNQLTSQLSNNFGAISSSIQDIYNRL 314 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456677777777777777766543322222 11222223445555666666666667777
Q ss_pred hhhhhhhHHH---HHHHHHHHHHhhcccccc
Q 026425 203 DSLADKQDIT---NIGMYLLCNFVDGKKGRT 230 (238)
Q Consensus 203 ~~ie~kQd~t---n~GV~~Lc~f~~~~~~~~ 230 (238)
|.+|+.+..- |--+-.|=.|+.+.-.|.
T Consensus 315 d~leAdaQVDRLItGRL~aLnafVtq~l~~~ 345 (610)
T PF01601_consen 315 DQLEADAQVDRLITGRLAALNAFVTQQLTKY 345 (610)
T ss_dssp HHHHHH-------------------------
T ss_pred HHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 8888776542 233444555665544433
No 361
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=43.41 E-value=1.8e+02 Score=25.59 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=12.6
Q ss_pred HHHHHHHhhhhhhhhhhhhh
Q 026425 190 DLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie~kQ 209 (238)
.+.+.|..++.+|.+|++++
T Consensus 139 ~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 139 LIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777766654
No 362
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.41 E-value=1.8e+02 Score=28.59 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHhhh
Q 026425 32 PELLRELQSLVERLSK 47 (238)
Q Consensus 32 sd~~g~lq~~~k~~~k 47 (238)
+|+++.+|.++..+.+
T Consensus 122 sdLv~Liq~l~a~f~~ 137 (365)
T KOG2391|consen 122 SDLVGLIQELIAAFSE 137 (365)
T ss_pred chHHHHHHHHHHHhcC
Confidence 6788888888866553
No 363
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=43.16 E-value=2.3e+02 Score=24.86 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=31.6
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026425 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQ 151 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsq 151 (238)
|.+-|--.|+...+....+-+...+.+..+..+|+..-+
T Consensus 94 ~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~ 132 (236)
T cd07651 94 FASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEA 132 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355577888999888888888888888888888887653
No 364
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=43.09 E-value=1.7e+02 Score=28.04 Aligned_cols=67 Identities=15% Similarity=0.387 Sum_probs=41.5
Q ss_pred HHHhHhhHHH----HHHHHHHhhHHHHH----HHHHHHHHHHHHHHhhHHhHH--------------HHHHHHHHHHHHH
Q 026425 117 MYVTRKSMAT----AVSNLNKHLESVTE----ALTVAKKHLTQRIQNLNDKVE--------------KQNEISKDIRKNV 174 (238)
Q Consensus 117 MyVTkr~ms~----Av~sv~kqLe~Vs~----sL~~tKkhLsqRI~~vd~kld--------------~~~eis~~i~~eV 174 (238)
=||-|.+.+= |+..+++=|+++-+ .|...|+.|..||+-+.--+| -..++++..+.|+
T Consensus 14 tfAIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~~L~~eI 93 (302)
T PF05508_consen 14 TFAIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTKDLRREI 93 (302)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 3677777654 55667776666544 588888888888887765444 4445555555555
Q ss_pred HHhhhhHHH
Q 026425 175 EEACDDLFK 183 (238)
Q Consensus 175 ~~v~~d~~~ 183 (238)
......+..
T Consensus 94 ~~f~~~l~~ 102 (302)
T PF05508_consen 94 DSFDERLEE 102 (302)
T ss_pred HHHHHHHHH
Confidence 444444443
No 365
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=43.08 E-value=2.4e+02 Score=29.73 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=42.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (238)
+..+--..++++.+|..+=.++.+|+=++...++.+..=....++++..++++++....|-.
T Consensus 40 ~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~ 101 (766)
T PF10191_consen 40 VMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTA 101 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH
Confidence 33333355677777777777888888788888877777777777777777777666555443
No 366
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=43.03 E-value=1.4e+02 Score=22.27 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=17.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 026425 127 AVSNLNKHLESVTEALTVAKKHLTQRIQ 154 (238)
Q Consensus 127 Av~sv~kqLe~Vs~sL~~tKkhLsqRI~ 154 (238)
-.+.+-.+++++.+.+...-+.+-+|=+
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge 31 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLERGE 31 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3455666677777777666666666533
No 367
>PRK15396 murein lipoprotein; Provisional
Probab=42.93 E-value=1.1e+02 Score=23.68 Aligned_cols=8 Identities=13% Similarity=-0.159 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 026425 211 ITNIGMYL 218 (238)
Q Consensus 211 ~tn~GV~~ 218 (238)
++|.-+..
T Consensus 64 raN~RlDn 71 (78)
T PRK15396 64 RANQRLDN 71 (78)
T ss_pred HHHHHHHH
Confidence 34444433
No 368
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=42.86 E-value=63 Score=26.38 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
|+.|-.++..+..++.++.+-...++++|.++-+.=....-+-+.++..+..++
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777777777777777777777777777666666677777777776653
No 369
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.85 E-value=3.3e+02 Score=31.22 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=6.1
Q ss_pred HHHhHhhHHHH
Q 026425 117 MYVTRKSMATA 127 (238)
Q Consensus 117 MyVTkr~ms~A 127 (238)
.+=||-+++.|
T Consensus 1534 L~~T~~di~ra 1544 (1758)
T KOG0994|consen 1534 LSRTKGDIARA 1544 (1758)
T ss_pred HHhhhhhHHHH
Confidence 45566555544
No 370
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.54 E-value=1.5e+02 Score=33.78 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
++++.+++++.||. |+.+..+|-+..+-...|.+++.-...||+.+..++..|..++..|+.+++.|.
T Consensus 1227 i~~l~~~~~~lr~~----l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQ----LQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHH----HHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444433 333344444444444455666777777888888888888888888888887765
No 371
>PRK08913 flgL flagellar hook-associated protein FlgL; Validated
Probab=42.34 E-value=2.6e+02 Score=25.21 Aligned_cols=21 Identities=0% Similarity=-0.162 Sum_probs=17.9
Q ss_pred cchHHHHHHHHHHHHHH-hhhc
Q 026425 53 NFTDAIKDQLNRLKFEC-QRAS 73 (238)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~las 73 (238)
.+.++++++++.|.+++ .++.
T Consensus 105 ~~~~~i~~e~~~l~~~l~~~~N 126 (301)
T PRK08913 105 TDATSAAASAQQALTQLATLLN 126 (301)
T ss_pred ccHHHHHHHHHHHHHHHHHHHc
Confidence 34678999999999999 8775
No 372
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.06 E-value=1.3e+02 Score=32.11 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIG 215 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~G 215 (238)
|+-.+-|.+....+..+|.++|++++.. |..=..--.+-+.++...+..++.|..+|.+|...-..|-.=
T Consensus 32 eqSL~~id~li~ki~~eir~~d~~l~~~----------Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~ 101 (793)
T KOG2180|consen 32 EQSLTNIDSLIQKIQGEIRRVDKNLLAV----------VRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAM 101 (793)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH----------HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHH
Q 026425 216 MYLLCN 221 (238)
Q Consensus 216 V~~Lc~ 221 (238)
|.-+|.
T Consensus 102 V~eiTr 107 (793)
T KOG2180|consen 102 VQEITR 107 (793)
T ss_pred HHHHHH
No 373
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=42.06 E-value=82 Score=31.58 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH------HHHHhhhhH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK------NVEEACDDL 181 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~------eV~~v~~d~ 181 (238)
.+||+..+-+|+|+.-.. ++..||++-...++...-|-+..++ -|+++++|+
T Consensus 117 i~~~~~el~~q~e~~ea~------e~e~~~erh~~h~~~le~i~~~l~n~~~~pe~v~~~q~di 174 (548)
T COG5665 117 IHDCLDELQKQLEQYEAQ------ENEEQTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDI 174 (548)
T ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHH
Confidence 689999999999987544 8889999999998888877777764 366666554
No 374
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=42.02 E-value=35 Score=29.78 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=26.3
Q ss_pred hhhhheecccccceeeccCCCcchHHHHHHHHHHHhhhc
Q 026425 10 QKILMLAGLGYTGTILVKDGKLPELLRELQSLVERLSKS 48 (238)
Q Consensus 10 ~kv~iLvGAG~~GSvl~k~G~Lsd~~g~lq~~~k~~~k~ 48 (238)
||+++.||||+.-+ -.+|+.-+.++.+.+.+..+
T Consensus 1 g~lvlFiGAG~S~~-----~glP~W~~Ll~~l~~~~~~~ 34 (242)
T cd01406 1 GRVVIFVGAGVSVS-----SGLPDWKTLLDEIASELGLE 34 (242)
T ss_pred CCEEEEecCccccc-----cCCCChHHHHHHHHHHcCCc
Confidence 68999999999733 47888888888888776543
No 375
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=42.02 E-value=51 Score=29.30 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhh-hHHHHHHHHHhhhhhhhhhh
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEH-NLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~-dv~~v~~~V~~Le~Ki~~ie 206 (238)
+|...+.|--|+.|+.. +++.++-..||+++..+..|++.-+. -..--.+.|.-||..|++..
T Consensus 38 lDElNs~IG~A~~~~~~---------~~i~~~L~~IQ~~LF~lG~dLat~~~~~~~i~~e~v~~LE~~id~y~ 101 (184)
T COG2096 38 LDELNSFIGLARALLKD---------EDIRAILRRIQNDLFDLGADLATPEEKPLRITEEDVKRLEKRIDAYN 101 (184)
T ss_pred HHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHhhhhhcCCCccccccCHHHHHHHHHHHHHHH
Confidence 67777777777776654 67777888888888888888887651 01122344555555555443
No 376
>PRK04098 sec-independent translocase; Provisional
Probab=42.00 E-value=2.4e+02 Score=24.62 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=39.1
Q ss_pred HhHhhHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhhHH--hHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 026425 119 VTRKSMATAVSNLNKH--LESVTEALTVAKKHLTQRIQNLND--KVEKQNEISKDIRKNVEEACDDLFKVEH 186 (238)
Q Consensus 119 VTkr~ms~Av~sv~kq--Le~Vs~sL~~tKkhLsqRI~~vd~--kld~~~eis~~i~~eV~~v~~d~~~i~~ 186 (238)
.-||.++++-+.+-.. ++.+-+.+...|+.|++-.++|.. .+|+..++.....+.-..+++.++.++.
T Consensus 38 ~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~~~~~~~~~~~~~~~~~~~~~ 109 (158)
T PRK04098 38 AVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITAENEIKSIQDLLQDYKK 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhcchhHHHHHhhhhh
Confidence 3455555555555553 345566666778888888888877 5666666665544443333333333333
No 377
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.95 E-value=1.6e+02 Score=28.40 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=23.6
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026425 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQ 151 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsq 151 (238)
+++.+++.+-+.++++++.+.|..+.+.|..
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888888777765
No 378
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=41.94 E-value=2e+02 Score=26.24 Aligned_cols=93 Identities=12% Similarity=0.173 Sum_probs=43.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH-------HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 026425 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD-------IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 130 sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~-------i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (238)
++-+|++..-+.=++.|.++..-++.++.++.+.+..-.. |-++....++|++++..-...+-+.+. -+.-
T Consensus 6 sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq~~~~LaE~~~--~~qy 83 (226)
T KOG3067|consen 6 SIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQKYRMLAELPP--AGQY 83 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhhcCC--ccce
Confidence 4445555555554555555554444444444333322222 222333334344433333332222222 2233
Q ss_pred hhhhhhhHHHHHHHHHHHHHhh
Q 026425 203 DSLADKQDITNIGMYLLCNFVD 224 (238)
Q Consensus 203 ~~ie~kQd~tn~GV~~Lc~f~~ 224 (238)
.+..++=++..+++-+|.+|+.
T Consensus 84 yry~~~w~~~~Q~vv~l~alv~ 105 (226)
T KOG3067|consen 84 YRYNGHWRRSTQRVVSLPALVA 105 (226)
T ss_pred EEecchHHHHHHHHHHHHHHHH
Confidence 4455666788888888888775
No 379
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=41.93 E-value=1.1e+02 Score=22.06 Aligned_cols=35 Identities=9% Similarity=0.349 Sum_probs=23.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 026425 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (238)
Q Consensus 129 ~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~ 163 (238)
..+-.+.+.+|+.|-.--.+.+.|||.|...+.+.
T Consensus 13 ~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 13 QQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34445556777777777788888888888877655
No 380
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=41.87 E-value=1.6e+02 Score=23.00 Aligned_cols=15 Identities=0% Similarity=0.120 Sum_probs=6.1
Q ss_pred HhHhhHHHHHHHHHH
Q 026425 119 VTRKSMATAVSNLNK 133 (238)
Q Consensus 119 VTkr~ms~Av~sv~k 133 (238)
+.+.++.+.++.-.+
T Consensus 29 a~~~~v~~~~~~f~~ 43 (113)
T PF02520_consen 29 AEKYGVQDQYNEFKA 43 (113)
T ss_pred HHHCCcHHHHHHHHH
Confidence 444444444433333
No 381
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.53 E-value=2.4e+02 Score=31.53 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=41.0
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH---HHHHHHHHHhhhhHHHhhhhHH
Q 026425 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS---KDIRKNVEEACDDLFKVEHNLK 189 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis---~~i~~eV~~v~~d~~~i~~dv~ 189 (238)
+-++++ ||+ -+++|..++..+-..|+-.+..+++-=..++....|..-+. ..++-+++++..++.+....++
T Consensus 668 l~ei~~--~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~ 742 (1141)
T KOG0018|consen 668 LKEIQK--RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMK 742 (1141)
T ss_pred HHHHHH--hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHH
Confidence 445566 444 56666666666666666666665543233333322222222 2223334444444444444444
Q ss_pred HHHHHHHhhhhhh
Q 026425 190 DLQSMIYCLDGKI 202 (238)
Q Consensus 190 ~v~~~V~~Le~Ki 202 (238)
+++.-++.+|.+|
T Consensus 743 ~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 743 ELEERMNKVEDRI 755 (1141)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 382
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.94 E-value=68 Score=24.39 Aligned_cols=55 Identities=18% Similarity=0.331 Sum_probs=30.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 026425 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (238)
Q Consensus 130 sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (238)
.+.+....+--.|+.+|..+. .+..++...++|.+-.++.++++..-++=+..++
T Consensus 25 d~~~~~~~lk~Klq~ar~~i~-~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKARAAIR-ELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444332 3555777777777777777776665555554444
No 383
>PF05802 EspB: Enterobacterial EspB protein
Probab=40.83 E-value=3.2e+02 Score=26.28 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
+-+.++.+=+.+++.+++..++-++|-.-.+++.+.++.+.+|+...-+....|-..+..-..|
T Consensus 148 q~kgaqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~Aa~k 211 (317)
T PF05802_consen 148 QQKGAQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQLAEQAADAAQK 211 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888999999999999999999999999999999999997777666665555543333
No 384
>PLN02678 seryl-tRNA synthetase
Probab=40.73 E-value=3.6e+02 Score=26.88 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 026425 188 LKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (238)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (238)
.+.+..-+..|-.+|..+|...+....-+..+
T Consensus 73 ~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 73 ATELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444333
No 385
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=40.64 E-value=1.2e+02 Score=20.92 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=10.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhh
Q 026425 131 LNKHLESVTEALTVAKKHLTQRIQNL 156 (238)
Q Consensus 131 v~kqLe~Vs~sL~~tKkhLsqRI~~v 156 (238)
..+.+......|...-+.|...++.+
T Consensus 12 ~a~~~~~~~~~l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 12 AAQQLQAQADELQSQLQQLESSIDSL 37 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444
No 386
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=40.55 E-value=1.9e+02 Score=29.63 Aligned_cols=30 Identities=7% Similarity=-0.005 Sum_probs=11.1
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 026425 154 QNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (238)
Q Consensus 154 ~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (238)
|.....+|++......-..++..+++|++.
T Consensus 40 d~a~~e~d~le~~l~~y~~~L~~~~~di~~ 69 (701)
T PF09763_consen 40 DEALAECDELESWLSLYDVELNSVRDDIEY 69 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 387
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=40.53 E-value=4.1e+02 Score=26.94 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 026425 136 ESVTEALTVAKKHLT 150 (238)
Q Consensus 136 e~Vs~sL~~tKkhLs 150 (238)
+++.+.+...+..+.
T Consensus 39 ~~~~~~~~~~~~~~~ 53 (475)
T PRK10361 39 EEMVAELSAAKQQIT 53 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 388
>PRK11020 hypothetical protein; Provisional
Probab=40.42 E-value=1.2e+02 Score=25.29 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=14.1
Q ss_pred HHHHHHhhhhhhhhhhhhhHHH
Q 026425 191 LQSMIYCLDGKIDSLADKQDIT 212 (238)
Q Consensus 191 v~~~V~~Le~Ki~~ie~kQd~t 212 (238)
+..-+..|+.+|.++-.+|.+-
T Consensus 36 f~~E~~~l~k~I~~lk~~~~~~ 57 (118)
T PRK11020 36 FEKEKATLEAEIARLKEVQSQK 57 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455678888887777653
No 389
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.12 E-value=3e+02 Score=27.51 Aligned_cols=64 Identities=23% Similarity=0.437 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
|...+|.+..+++.+-. +.++++++|......-.++.+.+..+++.+..-+..+|.+++.++..
T Consensus 34 ld~~~r~~~~~~e~l~~---~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~ 97 (429)
T COG0172 34 LDEERRKLLRELEELQA---ERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAE 97 (429)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45556666666666553 44566666652221111144555555555555555555555555443
No 390
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=40.01 E-value=2.5e+02 Score=24.42 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=13.0
Q ss_pred HhhhhHHHHHHHHHhhhhhhhh
Q 026425 183 KVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
...++++.++..-..|...|++
T Consensus 167 ~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 167 KHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666554
No 391
>PHA03386 P10 fibrous body protein; Provisional
Probab=39.92 E-value=1e+02 Score=24.86 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=8.3
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 026425 127 AVSNLNKHLESVTEALTVAK 146 (238)
Q Consensus 127 Av~sv~kqLe~Vs~sL~~tK 146 (238)
|++.+...++-+.+.+...+
T Consensus 13 dIkavd~KVdaLQ~qV~dv~ 32 (94)
T PHA03386 13 AVQEVDTKVDALQTQLNGLE 32 (94)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444333
No 392
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=39.88 E-value=2e+02 Score=23.29 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 026425 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~ 155 (238)
++...+++..|..+...|+...++|..-+-.
T Consensus 25 ~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~ 55 (132)
T PF10392_consen 25 SDSELDISTPLKKLNFDIQELDKRIRSQVTS 55 (132)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666666666666666555543
No 393
>PLN02320 seryl-tRNA synthetase
Probab=39.66 E-value=1.4e+02 Score=30.36 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhH--HhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 026425 140 EALTVAKKHLTQRIQNLN--DKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (238)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd--~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (238)
+.|++-++++++.|..-. ...++..+-.+.+++++.++..++..+..++..
T Consensus 110 ~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 110 ERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554310 112233333344444444444444444444333
No 394
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=39.64 E-value=3.6e+02 Score=26.12 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=16.0
Q ss_pred chhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 026425 114 ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHL 149 (238)
Q Consensus 114 sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhL 149 (238)
..-+.-.-.+++...+++=..|.+=++--..+.+|.
T Consensus 194 ~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~ 229 (412)
T PF04108_consen 194 MSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHT 229 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444444
No 395
>PRK10869 recombination and repair protein; Provisional
Probab=39.56 E-value=2.4e+02 Score=28.46 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEIS 167 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLs---qRI~~vd~kld~~~eis 167 (238)
..+.+.+.++--+|+.+...|..-...+. .|++.+.++|+....+.
T Consensus 264 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~ 312 (553)
T PRK10869 264 SGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLA 312 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777766554332 35555555554444443
No 396
>PRK09458 pspB phage shock protein B; Provisional
Probab=39.44 E-value=21 Score=27.59 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=27.9
Q ss_pred hHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 026425 116 LMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 116 lMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~ 162 (238)
|=|.||+.-+. .++..=++.-+.|...-+++.+||+.|.+=||.
T Consensus 24 LHY~sk~~~~~---~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 24 LHYRSKRQGSQ---GLSQEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HhhcccccCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44777776543 233333344455556667899999998887773
No 397
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=39.39 E-value=2.8e+02 Score=24.69 Aligned_cols=73 Identities=14% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH-HHHHHHHhhhhHHHhhhhHHH
Q 026425 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD-IRKNVEEACDDLFKVEHNLKD 190 (238)
Q Consensus 118 yVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~-i~~eV~~v~~d~~~i~~dv~~ 190 (238)
..+-..+.+.-+.+.+++..-.+.++.+=+.|..||..|...+.+..+-... |...-..+..++..+...++.
T Consensus 66 ~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 66 SKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFEN 139 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
No 398
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=39.31 E-value=2.6e+02 Score=28.49 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhhH
Q 026425 143 TVAKKHLTQRIQNLN 157 (238)
Q Consensus 143 ~~tKkhLsqRI~~vd 157 (238)
+..|..+..+|..++
T Consensus 350 en~k~~~e~~~~e~~ 364 (493)
T KOG0804|consen 350 ENQKQYYELLITEAD 364 (493)
T ss_pred HhHHHHHHHHHHHHH
Confidence 333333333333333
No 399
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=39.28 E-value=3.8e+02 Score=30.35 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=14.6
Q ss_pred cccchhHHHhHhhHHHHHHHHH
Q 026425 111 LSFADLMYVTRKSMATAVSNLN 132 (238)
Q Consensus 111 ws~sDlMyVTkr~ms~Av~sv~ 132 (238)
.+.||+-+....+.+-||..+-
T Consensus 892 ~~~p~f~~~~v~~~s~a~~~l~ 913 (1395)
T KOG3595|consen 892 FQNPDFVPEKVNRASLACEGLC 913 (1395)
T ss_pred cCCccCCHHHHHhhhhhhhhHH
Confidence 3566777777777777776654
No 400
>PRK09110 flagellar motor protein MotA; Validated
Probab=39.19 E-value=2.3e+02 Score=26.48 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=60.0
Q ss_pred Hhhhhheeeeeeec-----cccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHH
Q 026425 97 TLGALGYGYMWWKG-----LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQR---IQNLNDKVEKQNEISK 168 (238)
Q Consensus 97 ~vGavGYgYmwWKG-----ws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqR---I~~vd~kld~~~eis~ 168 (238)
++|++.+||++=.| |.+|-+|-|-=-.+ ++.-++-.+..+-.++...++-+..+ -+...+-++...+++.
T Consensus 10 ~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtl--ga~lv~~p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l~~l~~ 87 (283)
T PRK09110 10 VLGSVFGGYLLAGGHLGALIQPAELLIIGGAAL--GAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALLYELLR 87 (283)
T ss_pred HHHHHHHHHHHcCCChhHhhchhHHHHHHHhHH--HHHHHcCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Confidence 56677777776555 66777777765444 34456677888888888888877633 5556667778888888
Q ss_pred HHHHH-HHHhhhhHHHhhh
Q 026425 169 DIRKN-VEEACDDLFKVEH 186 (238)
Q Consensus 169 ~i~~e-V~~v~~d~~~i~~ 186 (238)
..|++ +-.+.++++++.+
T Consensus 88 ~aRk~GllaLE~~v~~~~~ 106 (283)
T PRK09110 88 KARQEGMMALEAHIENPEE 106 (283)
T ss_pred HHHhcCHHHHHhhhcCccc
Confidence 77766 5566666666553
No 401
>PF14182 YgaB: YgaB-like protein
Probab=39.16 E-value=1.9e+02 Score=22.67 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=34.6
Q ss_pred HHHHhhHHhHHHHHHHHHHHH-----HHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 151 QRIQNLNDKVEKQNEISKDIR-----KNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~-----~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
-++=.|-..||-|.+|-++.+ .+...+++.+++...+++.||.+...
T Consensus 14 D~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 14 DKLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888888887765 34777888888888888888877653
No 402
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=38.96 E-value=2.7e+02 Score=24.44 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=48.5
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH--HHhhhhHHH--hhhhHHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV--EEACDDLFK--VEHNLKDLQSMI 195 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV--~~v~~d~~~--i~~dv~~v~~~V 195 (238)
-|.......+.+.+++++....+.. |..+|..+..++++...--..+.-.+ ...+..+.. -+.|+.+-...+
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~----l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~f 168 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAK----LQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARF 168 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5666677777777777766555554 44455555555555443322222111 111111111 135666667777
Q ss_pred HhhhhhhhhhhhhhHHH
Q 026425 196 YCLDGKIDSLADKQDIT 212 (238)
Q Consensus 196 ~~Le~Ki~~ie~kQd~t 212 (238)
+-+|.|+.++|..-+..
T Consensus 169 er~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 169 EQYERRVDELEAQAESY 185 (219)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77788888888665544
No 403
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=38.93 E-value=1.3e+02 Score=20.76 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVE 161 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld 161 (238)
|.+....++....+|...++.+...++
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~ 35 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSID 35 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 404
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=38.86 E-value=2.2e+02 Score=26.58 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
|.+-...|.+-+..++.++. +++....+-..+..+.+..+..++.++..-+..|..+|.+
T Consensus 12 L~~Ep~~L~~~~~~l~~ql~---~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~ 71 (338)
T PF04124_consen 12 LFSEPQSLSEEIASLDAQLQ---SLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPE 71 (338)
T ss_pred HHhhHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444432 3333333334444444444444444444444444444433
No 405
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.84 E-value=2.2e+02 Score=30.19 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHhhhcCCCC-cchHHHHHHHHHHHHHH-hhhcC-------------CCeEEEeCCCCCcceeehhhh
Q 026425 31 LPELLRELQSLVERLSKSGEQD-NFTDAIKDQLNRLKFEC-QRASS-------------GQIFVRNENSGGNATSLMIPA 95 (238)
Q Consensus 31 Lsd~~g~lq~~~k~~~k~g~~~-~~~d~L~aQV~~L~~El-~las~-------------r~iTvvn~~sGg~~~~~ivpa 95 (238)
++++...+..++..-..--|.+ |..+.|-.+++++.++| +...+ +.||+-| +-+.+-|++
T Consensus 128 ~~~l~~~i~~~id~~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~-----~r~~i~vk~ 202 (782)
T PRK00409 128 LPELEQEIHNCIDEEGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRN-----DRYVLPVKA 202 (782)
T ss_pred cHHHHHHHHHHhCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEC-----CEEEEEech
Q ss_pred hHhhhhheeeeeeeccccch-hHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH
Q 026425 96 ATLGALGYGYMWWKGLSFAD-LMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI 170 (238)
Q Consensus 96 A~vGavGYgYmwWKGws~sD-lMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i 170 (238)
---+.+. || |.+.|-|- ..|++-..+..--+.+..--.+..+.....-++|+.+|..--..+....++...+
T Consensus 203 ~~~~~~~-g~--v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~l 275 (782)
T PRK00409 203 EYKHAIK-GI--VHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDEL 275 (782)
T ss_pred hhhccCC-Cc--eeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 406
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=38.83 E-value=1.4e+02 Score=27.09 Aligned_cols=27 Identities=11% Similarity=0.368 Sum_probs=11.6
Q ss_pred hhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 177 ACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 177 v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
++++|+.|+.++..+...++.+|..|.
T Consensus 20 ~~~~L~~i~~~~~~i~~~l~~~~~~l~ 46 (243)
T PF07160_consen 20 LKDTLSKIDQEVSAIEELLNDIEQELQ 46 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 407
>PLN03184 chloroplast Hsp70; Provisional
Probab=38.75 E-value=3e+02 Score=28.40 Aligned_cols=71 Identities=6% Similarity=0.195 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHH-----HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQ-----NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~-----~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
|........+|.+|..-|..+..++++. .+-.+.+++.+++.++=|. ++|.+.+++..+.|+..+..++.+
T Consensus 558 D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~--~~d~~~ik~~~~~l~~~l~~l~~~ 633 (673)
T PLN03184 558 DKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIA--SGSTQKMKDAMAALNQEVMQIGQS 633 (673)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677888888888888888642 2222344455555555554 357778888888888888777753
No 408
>PRK12687 flagellin; Reviewed
Probab=38.66 E-value=3.3e+02 Score=25.41 Aligned_cols=31 Identities=6% Similarity=-0.043 Sum_probs=23.4
Q ss_pred CCcchHHHHHHHHHHHHHH-hhhcC---CCeEEEe
Q 026425 51 QDNFTDAIKDQLNRLKFEC-QRASS---GQIFVRN 81 (238)
Q Consensus 51 ~~~~~d~L~aQV~~L~~El-~las~---r~iTvvn 81 (238)
++.+-..|+.++++|.+|| ..+.+ +.+-+++
T Consensus 105 ~~~dr~~i~~Ei~~L~~~i~~ia~~~~fnG~~lL~ 139 (311)
T PRK12687 105 PGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLS 139 (311)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCEeccC
Confidence 3356788999999999999 87753 4566665
No 409
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.66 E-value=4e+02 Score=26.89 Aligned_cols=86 Identities=13% Similarity=0.212 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHH----------------------HHHHHHHHHHhhHHhHHHHHHHHHHHHHHH------
Q 026425 123 SMATAVSNLNKHLESVTEALTV----------------------AKKHLTQRIQNLNDKVEKQNEISKDIRKNV------ 174 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~----------------------tKkhLsqRI~~vd~kld~~~eis~~i~~eV------ 174 (238)
++-+|.+.+.+|+|.+.+.+.. +|+-++.+|++...+++....+--+|-+-.
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl 316 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVL 316 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 4556666777777766665543 345566778888888888877777665432
Q ss_pred -------HHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 175 -------EEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 175 -------~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
..++.-+.+ +.-.+.|++.+..+..-+++=++=+
T Consensus 317 ~AyksGs~alK~il~~-~~s~ekVed~Ldev~et~d~~~EV~ 357 (439)
T KOG2911|consen 317 QAYKSGSEALKAILAQ-GGSTEKVEDVLDEVNETLDRQEEVE 357 (439)
T ss_pred HHHHHhHHHHHHHHhc-cCChhhHHHHHHHHHHHHhhHHHHH
Confidence 122222233 3444567777777776666554433
No 410
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=38.58 E-value=4.1e+02 Score=27.95 Aligned_cols=83 Identities=14% Similarity=0.246 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh-----------hhHHHhhhhHHHHHHHHHhhhhhh
Q 026425 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC-----------DDLFKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~-----------~d~~~i~~dv~~v~~~V~~Le~Ki 202 (238)
+.-..-.-|...+..+..++..+++|++.+....+.|+++.++.+ ..++-|=.|++.=++.+..||..+
T Consensus 179 ~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~ 258 (629)
T KOG0963|consen 179 EWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREV 258 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555566666666665555555555554444 446667788888888888888888
Q ss_pred hhhhhhhHHHHHHH
Q 026425 203 DSLADKQDITNIGM 216 (238)
Q Consensus 203 ~~ie~kQd~tn~GV 216 (238)
+.+...=.-+|++.
T Consensus 259 e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 259 EQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHhhhhhh
Confidence 88876655555554
No 411
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=38.52 E-value=2.7e+02 Score=27.71 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=29.7
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~k 159 (238)
+.|..+-.+-..++.++.++++.|...++.+...|+.--++
T Consensus 139 ~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~ 179 (507)
T PRK07739 139 GARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKE 179 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778888888888888888888777777666544333
No 412
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=38.50 E-value=2.3e+02 Score=23.47 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=13.0
Q ss_pred hhhHHHhhhhHHHHHHHHHhhhhh
Q 026425 178 CDDLFKVEHNLKDLQSMIYCLDGK 201 (238)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V~~Le~K 201 (238)
+.+.++..+|++..+..+..++.+
T Consensus 89 q~~~~~l~~ei~~~~~~~sd~~k~ 112 (115)
T COG4980 89 QPEIERLKSEIEDLQEAISDETKT 112 (115)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Confidence 333455666666666555555443
No 413
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.40 E-value=2.1e+02 Score=29.71 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=36.5
Q ss_pred HHHHHHhhHHhHHHHH---HHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 149 LTQRIQNLNDKVEKQN---EISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 149 LsqRI~~vd~kld~~~---eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
|.+..+.|-.+++.|. +=.+.+.-|-.++.+++..|+.+.+.+...|..++.++.
T Consensus 313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~ 370 (581)
T KOG0995|consen 313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIE 370 (581)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444555555555442 222344566778888999999999999999988876543
No 414
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=38.34 E-value=2.4e+02 Score=23.57 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=13.7
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 026425 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (238)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (238)
.||.+==+.|..+++....-.+++..++..+
T Consensus 38 ~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l 68 (131)
T PF10158_consen 38 EHLNQCAEAVAFDQNALAKRIKEVDQEIAKL 68 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555444444433344444343333
No 415
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=38.34 E-value=4.1e+02 Score=28.46 Aligned_cols=89 Identities=21% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH
Q 026425 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM 194 (238)
Q Consensus 115 DlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~ 194 (238)
+.|-..|.+|....+.-..+++....-| ++..++|..|..+|+..++-......++...+.....+..-...+..-
T Consensus 599 E~le~eK~~Le~~L~~~~d~lE~~~~qL----~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E 674 (769)
T PF05911_consen 599 EKLESEKEELEMELASCQDQLESLKNQL----KESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE 674 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHhhhhhhhhhhh
Q 026425 195 IYCLDGKIDSLAD 207 (238)
Q Consensus 195 V~~Le~Ki~~ie~ 207 (238)
+..|-.|+..+|.
T Consensus 675 ~~~l~~Ki~~Le~ 687 (769)
T PF05911_consen 675 AEELQSKISSLEE 687 (769)
T ss_pred HHHHHHHHHHHHH
No 416
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=38.28 E-value=74 Score=24.80 Aligned_cols=15 Identities=7% Similarity=0.114 Sum_probs=8.9
Q ss_pred eeeccccchhHHHhH
Q 026425 107 WWKGLSFADLMYVTR 121 (238)
Q Consensus 107 wWKGws~sDlMyVTk 121 (238)
.--|.|++|+.=..+
T Consensus 55 r~~G~sl~~i~~l~~ 69 (108)
T cd01107 55 RDLGFPLEEIKEILD 69 (108)
T ss_pred HHcCCCHHHHHHHHh
Confidence 345777777654443
No 417
>COG1511 Predicted membrane protein [Function unknown]
Probab=38.18 E-value=4.7e+02 Score=27.61 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=57.3
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHH--HHHHHHH-------HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEAL--TVAKKHL-------TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL--~~tKkhL-------sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (238)
|-+.++++.+.+++++-..+... -.+=+.+ ...+..+.+-.++.....+.+.+..+.+..-...+..++..
T Consensus 145 ~~~~~~~l~~~is~~~t~t~~~~v~~~~i~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (780)
T COG1511 145 TEKAADKLLNEISKELTETYTKVVAFPTIYDLGGGVKGAADGAEKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNA 224 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHH
Confidence 44556677777777776665554 1222222 33444445555555555555555555555555555555566
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Q 026425 191 LQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (238)
Q Consensus 191 v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (238)
+..-+..+...+..+....+.-+.|+..|-+..+
T Consensus 225 l~~~~~~l~d~l~~i~~~~~~~~~~~~~l~~~~~ 258 (780)
T COG1511 225 LTSGLTTLTDGLNQLDSGLGTLAAGIGELKQGAE 258 (780)
T ss_pred HhhhhHHHhhhHHHHHhhhhHHhhhhHHHHHHHH
Confidence 6666666666666666555555555555555443
No 418
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=38.11 E-value=3.1e+02 Score=27.76 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHH-----HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 137 SVTEALTVAKKHLTQRIQNLNDKVEKQ-----NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 137 ~Vs~sL~~tKkhLsqRI~~vd~kld~~-----~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
........+|.+|..-|..+.++|++. .+-.+.+++.+.+.++-|.. +|.+.+++....|+..+..+..++
T Consensus 520 ~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~--~~~~~i~~k~~~L~~~~~~~~~~~ 595 (627)
T PRK00290 520 KKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKG--EDKEAIKAKTEELTQASQKLGEAM 595 (627)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667788888888888888642 22234444455555554442 377888888888888888888754
No 419
>PRK11020 hypothetical protein; Provisional
Probab=38.04 E-value=32 Score=28.70 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHHHHhhhcCCCC------cchHHHHHHHHHHH-----------HHH-hhhcCCCeEE
Q 026425 30 KLPELLRELQSLVERLSKSGEQD------NFTDAIKDQLNRLK-----------FEC-QRASSGQIFV 79 (238)
Q Consensus 30 ~Lsd~~g~lq~~~k~~~k~g~~~------~~~d~L~aQV~~L~-----------~El-~las~r~iTv 79 (238)
+|+|-++.++.=+......||+. .+.+.|..++.+|+ ++| .+.-+|+||=
T Consensus 9 ~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK 76 (118)
T PRK11020 9 RLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITK 76 (118)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccH
Confidence 35666666666555555566665 45677777777764 344 4445777774
No 420
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=37.84 E-value=2.7e+02 Score=28.66 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=28.8
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd 157 (238)
+.|..+-..-.+++.++.++++.|...++.+..+|+.--
T Consensus 139 a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V 177 (627)
T PRK06665 139 AERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITV 177 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777788888888888888888877777765433
No 421
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=37.84 E-value=1.5e+02 Score=28.91 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 026425 140 EALTVAKKHLTQRI 153 (238)
Q Consensus 140 ~sL~~tKkhLsqRI 153 (238)
+.|++-+++++..|
T Consensus 45 ~~lr~~rn~~sk~i 58 (425)
T PRK05431 45 EELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 422
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.67 E-value=1.9e+02 Score=22.36 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=14.8
Q ss_pred hhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHH
Q 026425 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESV 138 (238)
Q Consensus 99 GavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~V 138 (238)
--+|++|+-. +++.+|...+.+.++.+
T Consensus 73 v~iG~~~~ve-------------~~~~eA~~~l~~r~~~l 99 (129)
T cd00890 73 VDLGTGVYVE-------------KSLEEAIEFLKKRLETL 99 (129)
T ss_pred EEecCCEEEE-------------ecHHHHHHHHHHHHHHH
Confidence 4677777544 45566655544444433
No 423
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.57 E-value=3.2e+02 Score=24.85 Aligned_cols=10 Identities=10% Similarity=0.607 Sum_probs=3.7
Q ss_pred HhhhhHHHHH
Q 026425 183 KVEHNLKDLQ 192 (238)
Q Consensus 183 ~i~~dv~~v~ 192 (238)
+|..|+..+.
T Consensus 57 qI~~DIn~lE 66 (230)
T PF10146_consen 57 QINQDINTLE 66 (230)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 424
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=37.47 E-value=1.8e+02 Score=21.84 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 026425 160 VEKQNEISKDIRKNVEEACD 179 (238)
Q Consensus 160 ld~~~eis~~i~~eV~~v~~ 179 (238)
......+++..+..+.+...
T Consensus 28 el~~~~~IKKLr~~~~e~e~ 47 (74)
T PF12329_consen 28 ELKLNNTIKKLRAKIKELEK 47 (74)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 425
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=37.46 E-value=2.5e+02 Score=27.08 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=17.7
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHL 149 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhL 149 (238)
|.|.-..-++.+++..++-+.+|...|++|
T Consensus 19 thr~Y~qKleel~~lQ~~C~ssI~~QkkrL 48 (330)
T PF07851_consen 19 THRSYKQKLEELSKLQDKCSSSISHQKKRL 48 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666654
No 426
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=37.42 E-value=2.3e+02 Score=24.26 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=13.0
Q ss_pred hHhhhhhee-eeeeeccccchh
Q 026425 96 ATLGALGYG-YMWWKGLSFADL 116 (238)
Q Consensus 96 A~vGavGYg-YmwWKGws~sDl 116 (238)
++++.+||| |.=+|=-|=||+
T Consensus 16 a~~~flgYciYFD~KRR~dPdF 37 (148)
T TIGR00985 16 AAAAFLGYAIYFDYKRRNDPDF 37 (148)
T ss_pred HHHHHHHHHHhhhhhhccCHHH
Confidence 456778898 544665555554
No 427
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=37.41 E-value=27 Score=28.49 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHH
Q 026425 145 AKKHLTQRIQNLNDKVEKQNEISKD 169 (238)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~ 169 (238)
+..+|..|++.+.. +|+..+.++
T Consensus 79 ~~~~lqkRle~l~~--eE~~~L~~e 101 (104)
T PF11460_consen 79 TNEELQKRLEELSP--EELEALQAE 101 (104)
T ss_pred hHHHHHHHHHhCCH--HHHHHHHHH
Confidence 34478888887754 344444433
No 428
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=37.26 E-value=2.9e+02 Score=24.27 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 026425 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (238)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (238)
-|.+..+.++.+...++.+.+.....+..+.+++..+...
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555444444444444443
No 429
>PRK09039 hypothetical protein; Validated
Probab=37.19 E-value=3.7e+02 Score=25.51 Aligned_cols=41 Identities=10% Similarity=0.210 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 168 KDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 168 ~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
...+.+.++.+.++..++.+|..++.-...|+.-|+..|..
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555556666666666666666666666655533
No 430
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=37.08 E-value=4.2e+02 Score=26.15 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHH-hhhcCCCeEEEeCCCC
Q 026425 55 TDAIKDQLNRLKFEC-QRASSGQIFVRNENSG 85 (238)
Q Consensus 55 ~d~L~aQV~~L~~El-~las~r~iTvvn~~sG 85 (238)
...+.+|+.++++.+ +-...+.+.++.+++.
T Consensus 312 ~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~ 343 (475)
T PLN03226 312 FKAYQKQVKANAAALANRLMSKGYKLVTGGTD 343 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 345677777777777 5333478888876543
No 431
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.06 E-value=3e+02 Score=24.37 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=33.4
Q ss_pred hHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 026425 116 LMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNL 156 (238)
Q Consensus 116 lMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~v 156 (238)
-..=.|+.+.+.+..+.+.+...+..+..+|+.--++=..+
T Consensus 96 ~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 96 KQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999999999998877654443
No 432
>PRK09546 zntB zinc transporter; Reviewed
Probab=37.00 E-value=3.2e+02 Score=25.03 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=17.1
Q ss_pred HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 173 NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 173 eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
...++.+.+.++-+|++..++....|-....++
T Consensus 223 ~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~ 255 (324)
T PRK09546 223 RMQDIADRLGRGLDDLDACIARTAVLADEIASV 255 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666665555554444433
No 433
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=36.96 E-value=2e+02 Score=22.33 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 026425 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (238)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (238)
...+++..+..|-+++-.++++...-...||.-=.++...=+.+...|.
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666555555555555555554445544443
No 434
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.95 E-value=3.5e+02 Score=25.14 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=51.0
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----hhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh-------hh
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ-----NLNDKVEKQNEISKDIRKNVEEACDDLFKVE-------HN 187 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~-----~vd~kld~~~eis~~i~~eV~~v~~d~~~i~-------~d 187 (238)
.++.-.+|+.-+.+||+.....|.++.+.|..==+ ..+..-....+....++.+..+++..+.... -+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 45556789999999999999999999877654211 1222222334455555666666665555442 23
Q ss_pred HHHHHHHHHhhhhhhhh
Q 026425 188 LKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ 204 (238)
+..++.-+..|+.+|..
T Consensus 244 v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDE 260 (362)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55555555555555543
No 435
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=36.83 E-value=1.2e+02 Score=22.17 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=10.0
Q ss_pred HHHHHHHhhHHhHH
Q 026425 148 HLTQRIQNLNDKVE 161 (238)
Q Consensus 148 hLsqRI~~vd~kld 161 (238)
++.+||+.|..+||
T Consensus 76 ~l~~~i~~L~~~le 89 (89)
T PF05164_consen 76 RLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC
Confidence 67777777777665
No 436
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=36.73 E-value=1.4e+02 Score=20.48 Aligned_cols=39 Identities=36% Similarity=0.527 Sum_probs=22.5
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 026425 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (238)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (238)
--..+...+++|.++...|.+.|......+..-...+..
T Consensus 19 ~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 19 MFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666555554444443
No 437
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.71 E-value=1.1e+02 Score=33.35 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (238)
.+++.=..++......+..|+....+.++.+......+-++...+...+++....++.....+..+-.|+.+++..-+..
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse 888 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSE 888 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcch
Q ss_pred H
Q 026425 213 N 213 (238)
Q Consensus 213 n 213 (238)
+
T Consensus 889 ~ 889 (970)
T KOG0946|consen 889 T 889 (970)
T ss_pred H
No 438
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=36.64 E-value=58 Score=27.70 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=32.4
Q ss_pred eeeccccchhHHHhHhh---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 026425 107 WWKGLSFADLMYVTRKS---MATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (238)
Q Consensus 107 wWKGws~sDlMyVTkr~---ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~ 155 (238)
-||--|+++|--+|--. +.+..---.++|+.+-..|..-|..|..+|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yM~~~ql~~fr~~L~~~r~eL~~~i~~ 57 (151)
T PRK10778 6 NRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVDR 57 (151)
T ss_pred hcccccchhccccccccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38888888888777766 33333333467777777777777777666653
No 439
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=36.54 E-value=27 Score=23.09 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=21.1
Q ss_pred eeeeeeccccchhHHHhHhhHHHH
Q 026425 104 GYMWWKGLSFADLMYVTRKSMATA 127 (238)
Q Consensus 104 gYmwWKGws~sDlMyVTkr~ms~A 127 (238)
-++.|+|++-+|--+++..+|.++
T Consensus 22 y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 22 YLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred EEEEECCCCCccCccccHHHhCch
Confidence 367999999999999999998876
No 440
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=36.53 E-value=1.3e+02 Score=20.79 Aligned_cols=27 Identities=4% Similarity=0.318 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHH
Q 026425 143 TVAKKHLTQRIQNLNDKVEKQNEISKD 169 (238)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~ 169 (238)
...+..+..+++.++.++++..++...
T Consensus 35 ~~~~~~l~~~~~~i~~~i~~L~~~~~~ 61 (65)
T PF09278_consen 35 ADRRALLEEKLEEIEEQIAELQALRAQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444433
No 441
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=36.47 E-value=2.3e+02 Score=22.88 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 026425 164 NEISKDIRKNVEEACDDLFKVEHNLKD 190 (238)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (238)
.+..+.+++...+++....+...+++.
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~~~~~l~~ 105 (158)
T PF03938_consen 79 QKRQQELQQKEQELQQFQQQAQQQLQQ 105 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544
No 442
>PRK04406 hypothetical protein; Provisional
Probab=36.40 E-value=1.9e+02 Score=21.89 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
+.+--.+|.-||...++.+|+.+++.-.=+.++..++..+..+..-++++
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444556666666666666666666666666666666666665544443
No 443
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=36.39 E-value=2.6e+02 Score=26.80 Aligned_cols=24 Identities=13% Similarity=0.372 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 185 EHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
..-++.++.-+..+..+|+++|+.
T Consensus 294 k~vv~el~k~~~~f~~qleELeeh 317 (336)
T PF05055_consen 294 KEVVKELKKNVESFTEQLEELEEH 317 (336)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444445555555544
No 444
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=36.37 E-value=3.6e+02 Score=26.95 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHH-----HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQ-----NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~-----~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
|........+|.+|..-|-.+.++|++. .+-.+.+++.+.+.++=|. ..|...++...+.|+..++.++.+
T Consensus 517 D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~--~~d~~~i~~~~~~l~~~~~~~~~~ 592 (595)
T TIGR02350 517 DKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALK--GEDVEEIKAKTEELQQALQKLAEA 592 (595)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677888888888888888642 2222333333333333332 236666766666666666666543
No 445
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.18 E-value=2.3e+02 Score=26.06 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 026425 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (238)
+||.+|+++... ||..++|- ..|++|..+.....+++....
T Consensus 153 ~Ld~ls~ti~rl-k~~a~~~g---~EL~~Q~~llDdl~~e~d~t~ 193 (235)
T KOG3202|consen 153 GLDGLSATVQRL-KGMALAMG---EELEEQGRLLDDLDNEMDRTE 193 (235)
T ss_pred HHHHHHHHHHHH-HHHHHHHh---HHHHHHHHHHHHHHHHHHHHH
Confidence 466666666655 34454443 566666666554444444433
No 446
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.18 E-value=3.1e+02 Score=24.85 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=39.6
Q ss_pred cccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 026425 111 LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (238)
Q Consensus 111 ws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (238)
||||.=--..| ..-|..+-++|+..+.. +..|.+.|++...-.++..|.+.++.++.+.++.+++.++-|+..
T Consensus 69 wsfps~a~~~~---ks~~qeLe~~L~~~~qk----~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k 141 (203)
T KOG3433|consen 69 WSFPSEAICDR---KSVLQELESQLATGSQK----KATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAK 141 (203)
T ss_pred cccchHHHHHH---HHHHHHHHHHHHHhhhh----HhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67876433333 23333444444333322 223344555555556666666666666666666666666666655
Q ss_pred HHH
Q 026425 191 LQS 193 (238)
Q Consensus 191 v~~ 193 (238)
+++
T Consensus 142 ~~e 144 (203)
T KOG3433|consen 142 IQE 144 (203)
T ss_pred Hhh
Confidence 543
No 447
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=36.15 E-value=3.1e+02 Score=26.79 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=27.8
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~ 155 (238)
+.|..+-.+-..+.+++.+++..|...++.+.+.|+.
T Consensus 127 ~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~ 163 (456)
T PRK07191 127 PMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDA 163 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777888888888888888777777666543
No 448
>PRK02119 hypothetical protein; Provisional
Probab=36.14 E-value=1.9e+02 Score=21.73 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
+.+--.+|.-|+...++.+|+.+++.-.-+.++..++..+..+..-++.+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445566666666666776666666666666666666666665555543
No 449
>PF11358 DUF3158: Protein of unknown function (DUF3158); InterPro: IPR021502 Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=36.12 E-value=69 Score=27.93 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=20.5
Q ss_pred HHHhhhcCCCCcchHHHHHHHHHHHHHH-hhhc
Q 026425 42 VERLSKSGEQDNFTDAIKDQLNRLKFEC-QRAS 73 (238)
Q Consensus 42 ~k~~~k~g~~~~~~d~L~aQV~~L~~El-~las 73 (238)
+|++-+.=++-++.+.++.|+..++.++ .++.
T Consensus 18 LKgLlkpfkgkg~l~~la~q~~~lr~~l~~l~q 50 (159)
T PF11358_consen 18 LKGLLKPFKGKGELEQLAEQCRALRDELISLAQ 50 (159)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333366788888888888887 5553
No 450
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=36.11 E-value=3e+02 Score=24.22 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=18.1
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
+.++..-.........++..++.-+..|..||.+
T Consensus 156 ~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 156 RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555566666666666666554
No 451
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.02 E-value=1.7e+02 Score=21.39 Aligned_cols=46 Identities=15% Similarity=0.367 Sum_probs=27.4
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
..|.-||...++.+++.+++.-.=+.++..++..+..+..-+.++.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666777777777777666667777777766666555555553
No 452
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=36.00 E-value=2.6e+02 Score=24.92 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHH
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISK 168 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~ 168 (238)
.|..+...|.+|..+++.+++++.+.++
T Consensus 31 ~Lk~~~~~L~krq~~Le~kIe~e~~~Ak 58 (191)
T PTZ00446 31 KNREAIDALEKKQVQVEKKIKQLEIEAK 58 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778888888888877777665
No 453
>PHA01750 hypothetical protein
Probab=35.97 E-value=1.1e+02 Score=23.45 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=5.1
Q ss_pred HHHHhhHHhHHHH
Q 026425 151 QRIQNLNDKVEKQ 163 (238)
Q Consensus 151 qRI~~vd~kld~~ 163 (238)
+.++||-..+++.
T Consensus 42 ~ELdNL~~ei~~~ 54 (75)
T PHA01750 42 SELDNLKTEIEEL 54 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444333333
No 454
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=35.89 E-value=1.5e+02 Score=21.66 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=26.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 156 vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
++.+|-.....-..+.+.-....+.+.++..=++-+++.+=.|..|+|
T Consensus 6 ~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiD 53 (57)
T PF02346_consen 6 IEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKID 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333333333333444444444556666667777777777777776
No 455
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.69 E-value=5.9e+02 Score=28.64 Aligned_cols=86 Identities=13% Similarity=0.242 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQR---IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqR---I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
-+-.-+..-.++|..+.++|..+++++..+ |+.+-..+.+...=......+...++..+..+..+...++...+-..
T Consensus 668 e~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~ 747 (1200)
T KOG0964|consen 668 ELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKG 747 (1200)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH
Confidence 344445555678888899999988876543 44444433333222233333444444444444444444444444444
Q ss_pred hhhhhhhhh
Q 026425 200 GKIDSLADK 208 (238)
Q Consensus 200 ~Ki~~ie~k 208 (238)
.+|..+...
T Consensus 748 ~~Le~i~~~ 756 (1200)
T KOG0964|consen 748 KELEEIKTS 756 (1200)
T ss_pred HHHHHHHHH
Confidence 444444433
No 456
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=35.57 E-value=3.1e+02 Score=24.11 Aligned_cols=114 Identities=10% Similarity=0.070 Sum_probs=66.2
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHhhHHhHHHHHHHHHHHHHHH-----------HHhh
Q 026425 121 RKSMATAVSNLNKHLESVTEALTV-----------AKKHLTQRIQNLNDKVEKQNEISKDIRKNV-----------EEAC 178 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe~Vs~sL~~-----------tKkhLsqRI~~vd~kld~~~eis~~i~~eV-----------~~v~ 178 (238)
|+.|++.+..++..--.|.+.... ..+.+.+++-.+-.+|.......+.++-|. .++.
T Consensus 11 Rk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G~FP~~~Y~~l~ 90 (229)
T PF10334_consen 11 RKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKGRFPKETYQRLL 90 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCCHHHHHHHH
Confidence 778888888888877777766665 123455667777777777777777775443 2444
Q ss_pred hhHHHhhhhHHHHHHHHHhhh-hhh-h----hhh-hhhHH--HHHHHHHHHHHhhcccccccccc
Q 026425 179 DDLFKVEHNLKDLQSMIYCLD-GKI-D----SLA-DKQDI--TNIGMYLLCNFVDGKKGRTTERT 234 (238)
Q Consensus 179 ~d~~~i~~dv~~v~~~V~~Le-~Ki-~----~ie-~kQd~--tn~GV~~Lc~f~~~~~~~~p~~~ 234 (238)
.-..+|-+=+..+..+...|| ... . .+. ...++ .-.-+-++|.-.=..+.++|+.+
T Consensus 91 ~~~~~il~~l~~l~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g~pLP~~l 155 (229)
T PF10334_consen 91 ELCQNILDLLSLLSYVSTRLEPSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTGQPLPPYL 155 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCccC
Confidence 444555555555555555553 110 0 000 11111 12345566666667888888765
No 457
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=35.56 E-value=52 Score=28.19 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHH-h-h--hcCCCeEEEe-CCCCCcceeehhh
Q 026425 58 IKDQLNRLKFEC-Q-R--ASSGQIFVRN-ENSGGNATSLMIP 94 (238)
Q Consensus 58 L~aQV~~L~~El-~-l--as~r~iTvvn-~~sGg~~~~~ivp 94 (238)
=+.+|.+||+|| - | |....=-+|. -++||-+.+|.+.
T Consensus 110 ~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~Vh~YGLA 151 (155)
T PF08496_consen 110 KASEVESLREEISAILSVATPEDEVLVRLESPGGMVHGYGLA 151 (155)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCceeeccchh
Confidence 368999999999 3 3 3333333344 4556667777763
No 458
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=35.52 E-value=5.3e+02 Score=26.83 Aligned_cols=72 Identities=18% Similarity=0.354 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 122 KSMATAVSNLNKHLESV----------TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~V----------s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
|.+.+-..++.+.+++| |+.++.+-..+..-+..+.+++++..|--.+++++=.++|++++++..-+..+
T Consensus 350 r~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 350 RKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555444 44555555555555555555666655555566655556666666555554444
Q ss_pred HH
Q 026425 192 QS 193 (238)
Q Consensus 192 ~~ 193 (238)
.+
T Consensus 430 kR 431 (570)
T COG4477 430 KR 431 (570)
T ss_pred HH
Confidence 33
No 459
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=35.21 E-value=2.1e+02 Score=26.62 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=59.8
Q ss_pred Hhhhhheeeeeeec-----cccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHH
Q 026425 97 TLGALGYGYMWWKG-----LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQR---IQNLNDKVEKQNEISK 168 (238)
Q Consensus 97 ~vGavGYgYmwWKG-----ws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqR---I~~vd~kld~~~eis~ 168 (238)
++|++.+||++=.| |.+|-+|-|-=-.+ +..-++.-+..+..++...|+-+..+ -+...+-++...+++.
T Consensus 10 ~~~~v~~g~~l~Gg~~~~l~~~~~~lIV~Ggtl--ga~lis~p~~~~~~~~~~~~~~f~~~~~~~~~~~~li~~l~~la~ 87 (282)
T TIGR03818 10 VLGCVFGGYLLAGGHLAALWQPAELLIIGGAAI--GAFIIANPPKVLKETLKGLPKVFKGSKYGKADYLDLLSLLYELLR 87 (282)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Confidence 55666667755333 55666666655444 34446777888888888888888666 4455677788888888
Q ss_pred HHHHH-HHHhhhhHHHhhh
Q 026425 169 DIRKN-VEEACDDLFKVEH 186 (238)
Q Consensus 169 ~i~~e-V~~v~~d~~~i~~ 186 (238)
..|++ +-.+.++++++.+
T Consensus 88 ~aR~~GllaLE~~v~~~~~ 106 (282)
T TIGR03818 88 KARREGLMAIESHIENPEE 106 (282)
T ss_pred HHHhcCHHHHHhhhcCccc
Confidence 88877 6667766666654
No 460
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=35.12 E-value=2.8e+02 Score=26.71 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHhhHHh-----------------HHHHHHHHHHHHH
Q 026425 113 FADLMYVTRKSMATAVSNLNKHLESVT---EALTVAKKHLTQRIQNLNDK-----------------VEKQNEISKDIRK 172 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av~sv~kqLe~Vs---~sL~~tKkhLsqRI~~vd~k-----------------ld~~~eis~~i~~ 172 (238)
+.+++.+...-..++++-+.+-|...- +.+.+.+.-...=++..++- ++.+.++.++-++
T Consensus 195 ~~ey~~~~~~~~~ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe 274 (320)
T TIGR01834 195 MADYQLLEADIGYKSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQE 274 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHH-hhhhHHHHHHHHHhhhhhhhhhh
Q 026425 173 NVEEACDDLFK-VEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 173 eV~~v~~d~~~-i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
.+.+.-..+-- .++||+.+++.+..||.++.+++
T Consensus 275 ~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~ 309 (320)
T TIGR01834 275 IVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLK 309 (320)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 461
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.02 E-value=1.2e+02 Score=28.86 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH-HHhhhhhhhh
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM-IYCLDGKIDS 204 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~-V~~Le~Ki~~ 204 (238)
.++-|.|+.-|+.|.|+=+.+- .-.+++++++.| .+-..+++..|.+ |..|-.|+.+
T Consensus 228 ~~lkeeia~Lkk~L~qkdq~il-----------eKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~ 285 (305)
T KOG3990|consen 228 QKLKEEIARLKKLLHQKDQLIL-----------EKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEE 285 (305)
T ss_pred HHHHHHHHHHHHHHhhhHHHHH-----------hhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555433322 224456777766 4444556666666 6666665543
No 462
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.98 E-value=4.8e+02 Score=26.50 Aligned_cols=78 Identities=19% Similarity=0.427 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 122 KSMATAVSNLNKHLESVT---EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs---~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
|-+-..+..+-+.|+.+- +.|.+--+.|.+|-+++|.++++- ++.+=.++..+.++...+...++..+..|
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a------v~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA------VQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH------HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433 233344445555555555554433 22222344445555566666666666666
Q ss_pred hhhhhhh
Q 026425 199 DGKIDSL 205 (238)
Q Consensus 199 e~Ki~~i 205 (238)
..+++.+
T Consensus 136 ~~~l~~~ 142 (472)
T TIGR03752 136 QRRLAGV 142 (472)
T ss_pred HHHHhhc
Confidence 6666543
No 463
>PRK01156 chromosome segregation protein; Provisional
Probab=34.91 E-value=3.4e+02 Score=28.45 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=4.2
Q ss_pred HHHHHHhhHHh
Q 026425 149 LTQRIQNLNDK 159 (238)
Q Consensus 149 LsqRI~~vd~k 159 (238)
|.++|..+..+
T Consensus 368 l~~~l~~~~~~ 378 (895)
T PRK01156 368 YLKSIESLKKK 378 (895)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 464
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.79 E-value=2e+02 Score=21.59 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026425 157 NDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNF 222 (238)
Q Consensus 157 d~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f 222 (238)
..+|.+-.+.+.+.++|-..+...--....-|+.++..+..+|..+..+..+.+-...-+..|-++
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556555555555555555555565555555555555555544444444444333
No 465
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.78 E-value=3.7e+02 Score=24.78 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhHHhHH
Q 026425 146 KKHLTQRIQNLNDKVE 161 (238)
Q Consensus 146 KkhLsqRI~~vd~kld 161 (238)
...++.+|+.+..+++
T Consensus 61 v~~~e~ei~~~r~r~~ 76 (239)
T COG1579 61 VSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 466
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=34.74 E-value=1.1e+02 Score=31.01 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 026425 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (238)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (238)
.....++..++.+++.++..+.+++++-.+.|+.++++++.=.++.
T Consensus 88 ~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~ld 133 (646)
T PRK05771 88 IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFD 133 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 3344555666666666666666667666667777777776554443
No 467
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=34.60 E-value=2.7e+02 Score=23.14 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHh-------HHHHHHHHHHHHHHHHHhhhhH-HHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDK-------VEKQNEISKDIRKNVEEACDDL-FKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~k-------ld~~~eis~~i~~eV~~v~~d~-~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
.+.+.+|....+.+.+.+..|... ++........++.....++... .....+++.+=-.+..++.|+...
T Consensus 26 ~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~ky 103 (136)
T PF04871_consen 26 SQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKY 103 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHH
Confidence 444455555545555544444442 2223333333333333333222 457788888888899999988743
No 468
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=34.57 E-value=4.3e+02 Score=27.13 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=40.2
Q ss_pred eeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh
Q 026425 106 MWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159 (238)
Q Consensus 106 mwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~k 159 (238)
-|-+-.+.||.| |+++.++++.-=-.|| +-.|.++|+-|..|.+++..-
T Consensus 157 ~~a~d~~~s~~~--q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~ 205 (554)
T KOG4677|consen 157 SYAPDLGRSKGE--QYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF 205 (554)
T ss_pred hcccccccchhh--hHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH
Confidence 367888899999 8899988887766666 888899999888888877655
No 469
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=34.51 E-value=4e+02 Score=25.12 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHH-hhhcCCCeEEEeCCCCCcceeehhhhhHhhhhheeeeeeeccccchhHHHhHhhHHHHHHHHHH
Q 026425 55 TDAIKDQLNRLKFEC-QRASSGQIFVRNENSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNK 133 (238)
Q Consensus 55 ~d~L~aQV~~L~~El-~las~r~iTvvn~~sGg~~~~~ivpaA~vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~k 133 (238)
...++.|+..|.-|+ +.-...| -|+..+.. |+ .++ .|..|.. +..
T Consensus 54 l~ll~~~~k~L~aE~~qwqk~~p-eii~~n~~------VL--~~l---------------------gkeelqk----l~~ 99 (268)
T PF11802_consen 54 LSLLMMRVKCLTAELEQWQKRTP-EIIPLNPE------VL--LTL---------------------GKEELQK----LIS 99 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CcCCCCHH------HH--HHH---------------------HHHHHHH----HHH
Confidence 346888999999999 6555433 23332222 11 022 3555544 455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 026425 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (238)
+|+.|-..+.+=.++|..-+++-..=|++++++-........+++.....+.. +.++..|+.||..++..+.-.
T Consensus 100 eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-----~rv~~el~~K~~~~k~~~e~L- 173 (268)
T PF11802_consen 100 ELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-----SRVFQELKTKIEKIKEYKEKL- 173 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-----HHHHHHHHHHHHHHHHHHHHH-
Confidence 77888788888888888888888888999999999888888877765544433 456678899988887554432
Q ss_pred HHHHHHHHHhh
Q 026425 214 IGMYLLCNFVD 224 (238)
Q Consensus 214 ~GV~~Lc~f~~ 224 (238)
+..|-.|.+
T Consensus 174 --l~~LgeFLe 182 (268)
T PF11802_consen 174 --LSFLGEFLE 182 (268)
T ss_pred --HHHHHHHHH
Confidence 334556665
No 470
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=34.37 E-value=1.7e+02 Score=24.60 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhh--HHHHHHHHHhhhhhhhhhh
Q 026425 163 QNEISKDIRKNVEEACDDLFKVEHN--LKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 163 ~~eis~~i~~eV~~v~~d~~~i~~d--v~~v~~~V~~Le~Ki~~ie 206 (238)
..+.-..||+++..+..++..-..+ -.--...|..||..|+.++
T Consensus 51 ~~~~L~~iq~~L~~l~~~la~~~~~~~~~i~~~~v~~Le~~i~~~~ 96 (163)
T PF01923_consen 51 LREILERIQNELFDLGAELATPEEDEEPEITEEDVQELEEEIDEYS 96 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSSSCS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHHHHHHHHH
Confidence 3344445555555555555442200 1112344555566655555
No 471
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=34.28 E-value=2.9e+02 Score=24.60 Aligned_cols=15 Identities=13% Similarity=0.414 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHH
Q 026425 55 TDAIKDQLNRLKFEC 69 (238)
Q Consensus 55 ~d~L~aQV~~L~~El 69 (238)
...|..++.+..++.
T Consensus 43 q~~Le~kIe~e~~~A 57 (191)
T PTZ00446 43 QVQVEKKIKQLEIEA 57 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555544
No 472
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.28 E-value=1.6e+02 Score=26.92 Aligned_cols=54 Identities=20% Similarity=0.371 Sum_probs=32.4
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHH---HHHH-------------HHHHHHHhhHHhHHHHHHHHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALT---VAKK-------------HLTQRIQNLNDKVEKQNEISKDIRKN 173 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~---~tKk-------------hLsqRI~~vd~kld~~~eis~~i~~e 173 (238)
++.=|++++..+..|+|..-..+. ..++ +|..+|++.-..+....-+...+.++
T Consensus 123 ~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~ 192 (233)
T PF04065_consen 123 ARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDND 192 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444577788888888777765544 2221 55556666666666665566655544
No 473
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=34.18 E-value=1.1e+02 Score=26.31 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (238)
+.+++..+-..+. +.+......++|.+|++.+..+|+.+.+.-..|.+..
T Consensus 38 v~~~v~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A 87 (180)
T PF04678_consen 38 VKEAVHRLLPLLN-VEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKA 87 (180)
T ss_pred HHHHHHHHhcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433322 3333345556677777777777777665555555444
No 474
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=34.15 E-value=1.2e+02 Score=22.13 Aligned_cols=54 Identities=11% Similarity=0.215 Sum_probs=31.2
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (238)
.+..++-+|..+.--. +..-.++.--+.|||..|..+|.+...=.+..+.+...
T Consensus 4 k~~~la~~~~L~~~~~---~~~a~a~~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 4 KKLALAVAILLASSAC---SASAQAAPLTIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred cHHHHHHHHHHHHHHH---HHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333 22223334458899999999888876666666665543
No 475
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=34.14 E-value=2.1e+02 Score=21.67 Aligned_cols=26 Identities=8% Similarity=0.262 Sum_probs=14.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026425 126 TAVSNLNKHLESVTEALTVAKKHLTQ 151 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tKkhLsq 151 (238)
+-|..|...|.++...+..-++-..+
T Consensus 8 ~~v~~I~~~I~~i~~~v~~l~~l~~~ 33 (117)
T smart00503 8 EKVEEIRANIQKISQNVAELQKLHEE 33 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777666666544443333
No 476
>PHA03332 membrane glycoprotein; Provisional
Probab=33.89 E-value=2.2e+02 Score=32.03 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=6.2
Q ss_pred HHHHHHHHHHh
Q 026425 60 DQLNRLKFECQ 70 (238)
Q Consensus 60 aQV~~L~~El~ 70 (238)
-++.-|-+|.+
T Consensus 807 ~si~gL~~eFe 817 (1328)
T PHA03332 807 VSIAGLLLEFE 817 (1328)
T ss_pred HHHHHHHHHHH
Confidence 35556666653
No 477
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=33.85 E-value=3.6e+02 Score=27.86 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
+-+..-++..-+.++.--.....++..+. .||..+..++...+.-.+.+.+|+..++...++|..+++.++.-+..
T Consensus 116 ~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 116 TKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
No 478
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.78 E-value=3.3e+02 Score=23.95 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 121 RKSMATAVSNLNKHLESV---TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe~V---s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
++..-+-...+-+++++. -..+....+.|.++|-.+.++.....+.-+....++..++.+.+.+..++.+...-.+.
T Consensus 105 ~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 105 QEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.77 E-value=2.4e+02 Score=23.25 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH----HHHHHH
Q 026425 123 SMATAVSNLNKHLE--SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI----RKNVEE 176 (238)
Q Consensus 123 ~ms~Av~sv~kqLe--~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i----~~eV~~ 176 (238)
++++...-+...-. ...+.+....+++..+|+.++.++.+..+....+ ++++++
T Consensus 58 sL~eI~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~ 117 (134)
T cd04779 58 SLAEIKDQLEEVQRSDKEQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTK 117 (134)
T ss_pred CHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.77 E-value=4.6e+02 Score=28.87 Aligned_cols=102 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred ccchhHHHhHhhHHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 026425 112 SFADLMYVTRKSMATAVSNLNKHLESV----------TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (238)
Q Consensus 112 s~sDlMyVTkr~ms~Av~sv~kqLe~V----------s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (238)
++-|+|..++..+..-....-..|.++ .-....+-+|-++|...|.....+-.+|.+.|+|++.++.-..
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 026425 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (238)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (238)
+.--.|++.++.-...|-.-+. +|..+.+-.|
T Consensus 559 esk~~eidi~n~qlkelk~~~~----~q~lake~~y 590 (1118)
T KOG1029|consen 559 ESKLNEIDIFNNQLKELKEDVN----SQQLAKEELY 590 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH----HHHHHHHHHH
No 481
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=33.65 E-value=2.8e+02 Score=23.04 Aligned_cols=57 Identities=12% Similarity=0.302 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (238)
++|..-+..+-..+.+--+.-++.|-+.-.|+|.|-+.+-....-....+++|++++
T Consensus 11 ~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 11 GTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhcc
No 482
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=33.62 E-value=1e+02 Score=29.55 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH-------hhhhHHH
Q 026425 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK-------VEHNLKD 190 (238)
Q Consensus 118 yVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~-------i~~dv~~ 190 (238)
|+.+--..|-|.+-++-+..++..++-=...|..|++.+=..++++....+.+.+.+..+++-|.+ ++.|+
T Consensus 203 ~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~-- 280 (307)
T PF15112_consen 203 HIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEEL-- 280 (307)
T ss_pred cCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHH--
Q ss_pred HHHHHHhhhhhhhhhhh
Q 026425 191 LQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 191 v~~~V~~Le~Ki~~ie~ 207 (238)
+.+..|+.|+.+.+.
T Consensus 281 --qkL~~l~~k~~~~~~ 295 (307)
T PF15112_consen 281 --QKLDSLQTKHQKLES 295 (307)
T ss_pred --HHHHHHHHHhcchhh
No 483
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=33.35 E-value=3.4e+02 Score=23.91 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH-HHHHHHHhhhhHHHhhhhHHHHHH
Q 026425 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD-IRKNVEEACDDLFKVEHNLKDLQS 193 (238)
Q Consensus 115 DlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~-i~~eV~~v~~d~~~i~~dv~~v~~ 193 (238)
|.|---||.|+++...+++.+..++..=..+ -|++-+.++.+--+...++... -.++...+.+.+...-..+.+|+.
T Consensus 36 e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~--~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~ 113 (224)
T cd07623 36 ESLVNHRKELALNTGSFAKSAAMLSNCEEHT--SLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKD 113 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 026425 194 MIY 196 (238)
Q Consensus 194 ~V~ 196 (238)
++.
T Consensus 114 ~f~ 116 (224)
T cd07623 114 VFH 116 (224)
T ss_pred HHH
No 484
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.29 E-value=2e+02 Score=28.66 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH----HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK----NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~----eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
+|...+|.+..+++.+-.+-++...-.+.... +..++..++..+..+++.+....+.++.++..+
T Consensus 33 ~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 33 ELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 485
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=33.23 E-value=3.5e+02 Score=28.32 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=0.0
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
+.|..+-..-+.+..++.++++.|...++.+.++|+..-.++.+..+=...+-+++..++..=..-.+=+++=.+.+..|
T Consensus 127 aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eL 206 (676)
T PRK05683 127 AARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQL 206 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHH
Q ss_pred hhhhh
Q 026425 199 DGKID 203 (238)
Q Consensus 199 e~Ki~ 203 (238)
-..++
T Consensus 207 S~~v~ 211 (676)
T PRK05683 207 NELVG 211 (676)
T ss_pred HhhcC
No 486
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=33.22 E-value=3.5e+02 Score=24.64 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred chhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 026425 114 ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (238)
Q Consensus 114 sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (238)
.|-|-..||+|+++-..+++.+..++.+-...-.+.-.++..+-.|+. +--..+-.+|...+.+-+...-.+++.++.
T Consensus 46 ~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t~L~~~l~~laev~eki~--~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kd 123 (218)
T cd07662 46 SDRMTRSHKSAADDYNRIGSSLYTLGTQDSTDICKFFLKVSELFDKTR--KIEARVAADEDLKLSDLLKYYLRESQAAKD 123 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH--HHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 026425 194 MIY 196 (238)
Q Consensus 194 ~V~ 196 (238)
+..
T Consensus 124 ll~ 126 (218)
T cd07662 124 LLY 126 (218)
T ss_pred HHH
No 487
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=33.03 E-value=2.2e+02 Score=22.68 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (238)
|-++.+.|...-.++..++.....+.++...-.+.-++++..++..+
T Consensus 71 Ll~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 71 LLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 488
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.97 E-value=6.4e+02 Score=27.93 Aligned_cols=92 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhh-hHHHHHHHHHhh
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEH-NLKDLQSMIYCL 198 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~-dv~~v~~~V~~L 198 (238)
+.+....-....-..+.++.+.+...++...+..+.++..++...+-.+.++.++..+...-..+.. |+..+..-+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l 354 (1201)
T PF12128_consen 275 DEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQL 354 (1201)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Q ss_pred hhhhhhhhhhhHH
Q 026425 199 DGKIDSLADKQDI 211 (238)
Q Consensus 199 e~Ki~~ie~kQd~ 211 (238)
+.=-.+++..+..
T Consensus 355 ~~~~~~~~~l~~~ 367 (1201)
T PF12128_consen 355 PEWRNELENLQEQ 367 (1201)
T ss_pred HHHHHHHHHHHHH
No 489
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=32.97 E-value=1.4e+02 Score=28.73 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhH
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNL 188 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv 188 (238)
+..++.+.+.+++++....++..+..|.++- +...|+.+..+-.+...+++.++++-+..-++++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~ 303 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNP-KKKNKLKELEEQLASLEKRIEEAEELIAEYGDEI 303 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
No 490
>PLN03223 Polycystin cation channel protein; Provisional
Probab=32.88 E-value=2.5e+02 Score=32.45 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHhHhhHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH---HHHhhhhHHHhhhhHHHH
Q 026425 117 MYVTRKSMA--TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN---VEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 117 MyVTkr~ms--~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e---V~~v~~d~~~i~~dv~~v 191 (238)
|-+.||.|. ||-+.++.-|+||. .|+-+..-|...|+.|..++|-++...+.=-.+ .+-+......|..-=..+
T Consensus 764 ~~~~~r~l~~~~~~~~l~~~~~~v~-~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~~~~~~i~~g~~d~~~~~~~~ 842 (1634)
T PLN03223 764 TRANRRRLQQTNAAATLTNILTQVG-TLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNSLETLINAGFTDIKAGQAAL 842 (1634)
T ss_pred chhhhhhhhhcchHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHhchhHHHhHHHHH
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHH
Q 026425 192 QSMIYCLDGKIDSLADKQDITNIGM 216 (238)
Q Consensus 192 ~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (238)
|.||++|-+||+-+....
T Consensus 843 -------~~~~~~il~kq~~al~~~ 860 (1634)
T PLN03223 843 -------EAKLDEILGKQQQALAAA 860 (1634)
T ss_pred -------HhHHHHHHHHHHHHHHHH
No 491
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=32.85 E-value=4.1e+02 Score=24.69 Aligned_cols=146 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHhhhcCCCC---cchHHHHHHHHHHHHHH-hhhcCCCe--EEEeCCCCCcceeehhhhhHhhhhhee
Q 026425 31 LPELLRELQSLVERLSKSGEQD---NFTDAIKDQLNRLKFEC-QRASSGQI--FVRNENSGGNATSLMIPAATLGALGYG 104 (238)
Q Consensus 31 Lsd~~g~lq~~~k~~~k~g~~~---~~~d~L~aQV~~L~~El-~las~r~i--Tvvn~~sGg~~~~~ivpaA~vGavGYg 104 (238)
|..+...|+.+-.-+-..+.++ .+-.+|+.+++.|.++| .++.+... ..+=+|+-..-.++.. .-|.
T Consensus 80 L~~i~~~l~r~rel~v~a~ngt~s~~dr~aia~Ei~~l~~~l~~~aNt~~~nG~ylFsG~~t~t~Pf~~---~~g~---- 152 (317)
T PRK08027 80 LSQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGRYIFAGYKTDKAPFDE---ATGG---- 152 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCcccCCCCCCCCCeeC---CCCC----
Q ss_pred eeeeec------cccchh--------------------------------HHHhHhhHHHHH-----------HHHHHhh
Q 026425 105 YMWWKG------LSFADL--------------------------------MYVTRKSMATAV-----------SNLNKHL 135 (238)
Q Consensus 105 YmwWKG------ws~sDl--------------------------------MyVTkr~ms~Av-----------~sv~kqL 135 (238)
|.| +.+++= +|-|=.+|..+. +.....|
T Consensus 153 ---y~G~~~~~~~~i~~~~~v~~n~~g~~vF~~~~~~~~~~~~~~~~~~~if~~l~~l~~~l~~~~~~~~~~~~~~~~~l 229 (317)
T PRK08027 153 ---YVGGTESITQQVDAARSMVIGHTGDQIFDSITSNAVPEPDGSASETNLFAMLDSAIAALKTPVAGSDADKETAAAAL 229 (317)
T ss_pred ---ccCCCcceEEEecCCceeccCCCHHHHhcCCCCCCCCCCCCCcccchHHHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEH 186 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~ 186 (238)
...-+.|..+..|+......+..++.....+.....+.-..+..-++++.+
T Consensus 230 ~~a~~~id~~~~~v~~~~a~vGar~n~le~~~~~~~~~~l~~~~~~s~led 280 (317)
T PRK08027 230 DKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSDRALGQKQQMSDLVD 280 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhc
No 492
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=32.83 E-value=2.5e+02 Score=22.28 Aligned_cols=102 Identities=11% Similarity=0.155 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (238)
..+++..+.+..-++.+..+=..++.=.+.-.++...-..+...+...++.+...-+.|+..+..-..+|...-....+.
T Consensus 33 ~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~ 112 (213)
T cd00176 33 ESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFF 112 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhccccccccccc
Q 026425 213 NIGMYLLCNFVDGKKGRTTERTI 235 (238)
Q Consensus 213 n~GV~~Lc~f~~~~~~~~p~~~~ 235 (238)
..-.. ++.|+......+.....
T Consensus 113 ~~~~~-l~~wl~~~e~~l~~~~~ 134 (213)
T cd00176 113 RDADD-LEQWLEEKEAALASEDL 134 (213)
T ss_pred HHHHH-HHHHHHHHHHHhcCccc
No 493
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=32.83 E-value=1.3e+02 Score=26.10 Aligned_cols=62 Identities=15% Similarity=0.334 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
|+.+.+.....-+.+..+++.+++.+ ...-....-+++..++.++..+..-+...++++..+
T Consensus 116 l~~~~~~~~~~l~~l~~~l~~le~~~--~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~ 177 (292)
T PF01544_consen 116 LDEIVDDYFEVLEELEDELDELEDEL--DDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRL 177 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--THTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--ccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
No 494
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.81 E-value=2.1e+02 Score=21.35 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 139 TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 139 s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
.+++.+--.+|.-||...++.+|+.+++.-.-+.++..++..+..+..-++.+
T Consensus 3 ~~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 3 DSSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 495
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.77 E-value=2.3e+02 Score=21.89 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh-----HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 026425 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK-----VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~k-----ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (238)
.+.....+.+..-++.|......|.++|+.|-.. -+.-..-..+....++++..-+.+|+..++..-..++.-|.
T Consensus 10 ~~~~~~A~~~~~~~~~i~~~l~~l~s~~~~l~~~W~G~a~~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a~~~~~~d~ 89 (97)
T COG4842 10 EEMRATAKDYAGSSGEIQALLQDLASEIAKLQSAWEGDAAEAFQSEQQQWNQAATELNEALEQLADALRHAADAFEEADQ 89 (97)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 026425 201 KIDS 204 (238)
Q Consensus 201 Ki~~ 204 (238)
++..
T Consensus 90 ~~a~ 93 (97)
T COG4842 90 RVAQ 93 (97)
T ss_pred HHHh
No 496
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.76 E-value=4.5e+02 Score=26.72 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
+|-+..+.-++.++-..++...++=..-.+.-+.-......+-++|++.|...+.++.+ +.++++.-...+.+.|.+
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~---~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTK---EIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 026425 205 LADK 208 (238)
Q Consensus 205 ie~k 208 (238)
+...
T Consensus 135 l~~~ 138 (472)
T TIGR03752 135 LQRR 138 (472)
T ss_pred HHHH
No 497
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.73 E-value=2.4e+02 Score=29.25 Aligned_cols=77 Identities=8% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH--HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN--VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 131 v~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e--V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
+..+++.=++.-+.|.+.|.+|++.+..+|++..+-.+.-+++ +..+..+....-..+..++.-...|+.+...+..
T Consensus 254 i~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~ 332 (726)
T PRK09841 254 LQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQ 332 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=32.65 E-value=2.1e+02 Score=23.56 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKK---HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKk---hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (238)
..+.+-++.+.++-.+.+..|+.+|+ +|+.|+=+|-.+++-..--.-.+..+-.+++..++.+..++..
T Consensus 54 ~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 54 KEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
No 499
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.61 E-value=2.2e+02 Score=23.83 Aligned_cols=65 Identities=9% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHhH-HHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Q 026425 157 NDKV-EKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (238)
Q Consensus 157 d~kl-d~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (238)
.+.+ .|..|..+..++.|+.+++=.-+|+.||+.=+++..++++-.++....=--|-.-+.-+.+
T Consensus 27 ~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar 92 (118)
T KOG3385|consen 27 LASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMAR 92 (118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHh
No 500
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=32.58 E-value=1.5e+02 Score=24.28 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHhHHHHHHHHH------HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 148 HLTQRIQNLNDKVEKQNEISK------DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~------~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
++..++..++=.|++..++.. ...+-..-++..++++...++.++++-..|+.+++.++.+.+
T Consensus 48 ~~I~~lr~~GfsL~eI~~ll~~~~~~~~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~~~~ 116 (131)
T cd04786 48 EIISSAQQAGFSLDEIRQLLPADASNWQHDELLAALERKVADIEALEARLAQNKAQLLVLIDLIESKPD 116 (131)
T ss_pred HHHHHHHHcCCCHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Done!