Query 026425
Match_columns 238
No_of_seqs 67 out of 69
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:17:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ba2_A D12_ORF131, hypothetica 94.8 0.057 1.9E-06 41.3 5.7 77 118-206 8-84 (85)
2 1fxk_C Protein (prefoldin); ar 94.1 0.6 2.1E-05 36.5 10.6 43 142-184 86-128 (133)
3 2zdi_C Prefoldin subunit alpha 94.1 0.88 3E-05 36.5 11.8 117 30-183 6-137 (151)
4 2no2_A HIP-I, huntingtin-inter 93.4 1.3 4.5E-05 34.5 11.3 79 129-207 11-96 (107)
5 1m1j_B Fibrinogen beta chain; 91.8 2.3 8E-05 40.8 12.9 96 113-208 87-190 (464)
6 3g67_A Methyl-accepting chemot 91.1 2.7 9.2E-05 36.1 11.4 35 124-158 5-39 (213)
7 1deq_A Fibrinogen (alpha chain 90.7 2.7 9.4E-05 39.7 11.9 98 113-210 54-158 (390)
8 3ghg_A Fibrinogen alpha chain; 90.6 3.6 0.00012 40.4 13.0 99 113-211 51-156 (562)
9 3okq_A BUD site selection prot 90.6 2.5 8.7E-05 34.8 10.3 76 140-215 10-105 (141)
10 3g67_A Methyl-accepting chemot 90.0 6.5 0.00022 33.7 12.9 74 130-203 4-77 (213)
11 3na7_A HP0958; flagellar bioge 89.4 2.4 8.4E-05 36.6 9.9 63 142-204 23-85 (256)
12 3trt_A Vimentin; cytoskeleton, 87.6 6 0.00021 28.2 9.7 69 123-191 6-75 (77)
13 3oja_A Leucine-rich immune mol 87.3 4 0.00014 37.5 10.4 65 157-221 413-477 (487)
14 1m1j_A Fibrinogen alpha subuni 87.3 9.1 0.00031 37.1 13.0 102 109-210 48-156 (491)
15 3mq9_A Bone marrow stromal ant 87.2 4.2 0.00014 37.1 10.5 78 123-201 356-433 (471)
16 2yo3_A General control protein 85.9 2.1 7.2E-05 38.6 7.5 58 134-191 199-256 (268)
17 3tnu_B Keratin, type II cytosk 85.8 1.9 6.4E-05 34.0 6.4 72 131-205 20-94 (129)
18 3o0z_A RHO-associated protein 85.5 14 0.00046 31.2 11.8 80 120-206 56-138 (168)
19 3hnw_A Uncharacterized protein 85.5 9.1 0.00031 30.9 10.5 64 148-211 72-135 (138)
20 2akf_A Coronin-1A; coiled coil 85.3 0.69 2.4E-05 29.1 2.8 28 182-209 2-29 (32)
21 4dnd_A Syntaxin-10, SYN10; str 84.6 2.9 9.8E-05 33.5 7.0 27 120-146 68-94 (130)
22 1deq_A Fibrinogen (alpha chain 84.4 5.6 0.00019 37.6 9.8 66 125-190 94-159 (390)
23 3a7p_A Autophagy protein 16; c 84.2 16 0.00056 30.4 11.5 66 127-207 59-124 (152)
24 3mq9_A Bone marrow stromal ant 84.1 12 0.00042 34.0 12.0 42 122-163 369-416 (471)
25 3oja_B Anopheles plasmodium-re 83.8 11 0.00039 35.0 11.7 36 122-157 459-494 (597)
26 1c1g_A Tropomyosin; contractIl 83.7 15 0.0005 29.1 13.6 35 171-205 68-102 (284)
27 3cvf_A Homer-3, homer protein 83.5 2.7 9.3E-05 31.5 6.0 27 148-174 24-50 (79)
28 2jee_A YIIU; FTSZ, septum, coi 83.4 11 0.00037 28.4 9.3 67 153-219 8-74 (81)
29 3tnu_A Keratin, type I cytoske 83.3 2 6.8E-05 34.0 5.5 74 129-205 20-96 (131)
30 2qyw_A Vesicle transport throu 83.2 5.2 0.00018 30.5 7.7 62 114-178 14-76 (102)
31 2xzr_A Immunoglobulin-binding 83.2 15 0.00052 28.9 11.3 72 123-194 31-105 (114)
32 3onj_A T-snare VTI1; helix, HA 83.0 5.8 0.0002 29.9 7.8 53 122-177 8-60 (97)
33 3na7_A HP0958; flagellar bioge 82.9 9 0.00031 33.0 10.0 64 153-216 62-127 (256)
34 1gl2_D Syntaxin 8, vesicle tra 82.3 6.1 0.00021 27.4 7.1 51 151-201 9-59 (65)
35 3oja_B Anopheles plasmodium-re 82.0 29 0.00099 32.3 13.8 8 216-223 574-581 (597)
36 3htk_A Structural maintenance 81.8 6.7 0.00023 26.6 7.1 46 156-201 10-55 (60)
37 1ic2_A Tropomyosin alpha chain 80.8 14 0.00047 26.8 9.1 55 150-204 19-73 (81)
38 1m1j_B Fibrinogen beta chain; 79.9 23 0.00078 34.0 12.5 14 189-202 178-191 (464)
39 3c9i_A Tail needle protein GP2 79.7 6.9 0.00024 34.5 8.0 97 111-208 36-141 (242)
40 4aj5_A SKA1, spindle and kinet 79.5 19 0.00065 27.7 9.7 47 176-226 34-80 (91)
41 4abx_A DNA repair protein RECN 79.3 4.5 0.00015 33.0 6.5 93 112-208 67-165 (175)
42 3cve_A Homer protein homolog 1 78.7 11 0.00038 27.7 7.8 27 148-174 18-44 (72)
43 3gwk_C SAG1039, putative uncha 78.6 16 0.00053 26.1 11.3 76 128-203 13-93 (98)
44 3tnu_B Keratin, type II cytosk 78.5 8.2 0.00028 30.3 7.6 59 150-208 14-72 (129)
45 1n7s_D SNAP-25A; neuronal snar 78.3 14 0.00049 25.5 8.5 46 148-193 7-52 (66)
46 2l5g_B Putative uncharacterize 78.2 2.1 7.2E-05 28.7 3.3 21 145-165 3-23 (42)
47 3u59_A Tropomyosin beta chain; 77.5 20 0.0007 26.9 11.2 73 147-219 19-91 (101)
48 1sfc_D Protein (SNAP-25B), pro 76.4 20 0.00068 26.4 8.7 41 151-191 29-69 (87)
49 3tnu_A Keratin, type I cytoske 76.2 9 0.00031 30.1 7.2 55 153-207 19-73 (131)
50 3u1c_A Tropomyosin alpha-1 cha 76.1 23 0.00079 26.8 11.2 56 150-205 22-77 (101)
51 2nps_D Syntaxin-6; vesicle fus 75.8 13 0.00045 27.0 7.5 41 182-222 36-76 (82)
52 3htk_A Structural maintenance 75.8 16 0.00053 24.7 7.8 43 135-177 10-52 (60)
53 1m1j_C Fibrinogen gamma chain; 74.9 31 0.001 32.5 11.6 92 113-205 25-124 (409)
54 3m0a_A TNF receptor-associated 74.8 18 0.00062 25.0 8.0 58 149-206 3-60 (66)
55 3ghg_A Fibrinogen alpha chain; 74.6 12 0.0004 36.9 8.8 87 138-224 51-141 (562)
56 2w83_C C-JUN-amino-terminal ki 74.6 21 0.00071 26.7 8.3 65 122-207 5-72 (77)
57 2jee_A YIIU; FTSZ, septum, coi 74.6 25 0.00084 26.4 9.6 54 152-205 28-81 (81)
58 1l8d_A DNA double-strand break 74.5 24 0.00082 26.3 10.4 76 128-203 5-102 (112)
59 3ghg_C Fibrinogen gamma chain; 74.5 34 0.0012 32.4 11.8 95 113-207 25-126 (411)
60 1vcs_A Vesicle transport throu 74.3 4.4 0.00015 30.8 4.8 69 122-193 12-88 (102)
61 3efg_A Protein SLYX homolog; x 74.2 7.8 0.00027 28.5 5.9 54 147-207 10-63 (78)
62 3zbh_A ESXA; unknown function, 73.9 20 0.0007 25.1 11.6 27 130-156 16-42 (99)
63 1m1j_A Fibrinogen alpha subuni 73.2 29 0.00099 33.6 11.0 67 124-190 91-157 (491)
64 2xdj_A Uncharacterized protein 73.0 17 0.00057 27.1 7.6 26 170-195 32-57 (83)
65 2dfs_A Myosin-5A; myosin-V, in 73.0 36 0.0012 35.6 12.6 15 121-135 923-937 (1080)
66 3cvf_A Homer-3, homer protein 71.4 25 0.00084 26.2 8.1 62 143-207 5-66 (79)
67 4ioe_A Secreted protein ESXB; 71.0 24 0.00082 24.7 10.8 30 127-156 13-42 (93)
68 3swy_A Cyclic nucleotide-gated 70.8 10 0.00034 25.7 5.3 36 124-159 10-45 (46)
69 4ioe_A Secreted protein ESXB; 70.3 25 0.00085 24.6 9.6 31 133-163 12-42 (93)
70 1t3j_A Mitofusin 1; coiled coi 70.3 21 0.0007 27.6 7.7 19 144-162 47-65 (96)
71 2nps_D Syntaxin-6; vesicle fus 69.9 13 0.00045 27.0 6.3 57 151-207 19-75 (82)
72 4i0x_B ESAT-6-like protein MAB 69.7 30 0.001 25.3 9.2 34 133-166 14-47 (103)
73 3zx6_A HAMP, methyl-accepting 69.6 60 0.0021 28.7 14.1 14 56-69 37-50 (341)
74 1ic2_A Tropomyosin alpha chain 69.4 29 0.001 25.1 9.9 66 149-214 4-69 (81)
75 4h22_A Leucine-rich repeat fli 69.2 28 0.00097 27.2 8.4 58 146-203 25-82 (103)
76 1sfc_D Protein (SNAP-25B), pro 68.8 26 0.00088 25.8 7.8 49 171-219 35-83 (87)
77 3vkg_A Dynein heavy chain, cyt 67.4 53 0.0018 38.5 13.3 102 122-223 2010-2121(3245)
78 3swf_A CGMP-gated cation chann 66.5 20 0.00069 26.5 6.7 39 124-162 12-50 (74)
79 2q6q_A Spindle POLE BODY compo 65.9 37 0.0013 25.0 7.8 58 146-203 5-62 (74)
80 2v71_A Nuclear distribution pr 64.7 66 0.0022 27.4 14.0 101 119-219 28-135 (189)
81 3ci9_A Heat shock factor-bindi 64.4 17 0.00059 24.7 5.5 39 125-163 5-43 (48)
82 3zx6_A HAMP, methyl-accepting 64.2 77 0.0026 28.0 14.7 13 61-73 7-20 (341)
83 3pwx_A Putative flagellar HOOK 63.6 69 0.0024 27.3 13.3 22 53-74 69-91 (239)
84 1wle_A Seryl-tRNA synthetase; 62.8 34 0.0012 32.8 9.3 29 141-172 74-102 (501)
85 1gl2_D Syntaxin 8, vesicle tra 62.2 20 0.00069 24.7 5.8 43 174-216 18-60 (65)
86 3fav_B ESAT-6, 6 kDa early sec 61.5 39 0.0013 23.7 7.8 28 135-162 10-37 (94)
87 2zqm_A Prefoldin beta subunit 61.1 26 0.00088 26.0 6.6 15 55-69 22-36 (117)
88 3zbh_A ESXA; unknown function, 60.9 40 0.0014 23.6 10.6 31 133-163 12-42 (99)
89 2bez_C E2 glycoprotein; coiled 60.6 50 0.0017 24.6 8.8 64 123-207 13-76 (77)
90 3hd7_B Syntaxin-1A; membrane p 60.5 18 0.00061 27.7 5.7 67 153-219 23-89 (109)
91 3hnw_A Uncharacterized protein 60.3 64 0.0022 25.8 9.6 55 150-204 81-135 (138)
92 4dnd_A Syntaxin-10, SYN10; str 60.2 62 0.0021 25.6 10.1 93 107-206 19-125 (130)
93 3s84_A Apolipoprotein A-IV; fo 59.9 42 0.0014 29.6 8.8 27 163-189 207-233 (273)
94 2b9c_A Striated-muscle alpha t 59.8 68 0.0023 26.0 9.4 69 151-219 52-120 (147)
95 2v71_A Nuclear distribution pr 59.6 82 0.0028 26.8 12.2 100 124-223 22-132 (189)
96 1jcd_A Major outer membrane li 59.5 32 0.0011 23.7 6.2 13 149-161 9-21 (52)
97 1i84_S Smooth muscle myosin he 58.9 23 0.0008 36.9 7.9 10 55-64 697-706 (1184)
98 3cve_A Homer protein homolog 1 58.8 51 0.0017 24.1 8.2 50 121-170 16-65 (72)
99 4fla_A Regulation of nuclear P 58.4 74 0.0025 25.9 10.3 69 135-203 70-145 (152)
100 2pnv_A Small conductance calci 58.4 18 0.00062 24.1 4.7 30 137-166 9-38 (43)
101 1l4a_D S-SNAP25 fusion protein 58.1 47 0.0016 24.5 7.5 32 185-216 50-81 (87)
102 2ch7_A Methyl-accepting chemot 57.3 87 0.003 26.4 14.5 15 185-199 106-120 (309)
103 3v86_A De novo design helix; c 57.3 12 0.00041 22.5 3.2 23 169-191 4-26 (27)
104 3gwk_C SAG1039, putative uncha 57.0 49 0.0017 23.4 10.1 32 133-164 11-42 (98)
105 3nmd_A CGMP dependent protein 57.0 40 0.0014 24.8 6.7 46 128-174 15-63 (72)
106 2l3l_A Tubulin-specific chaper 56.4 68 0.0023 24.8 8.8 72 133-206 31-104 (111)
107 3a7p_A Autophagy protein 16; c 56.0 61 0.0021 26.9 8.5 16 191-206 101-116 (152)
108 1ses_A Seryl-tRNA synthetase; 56.0 50 0.0017 30.7 9.0 27 142-171 33-59 (421)
109 1p68_A De novo designed protei 55.6 28 0.00095 26.5 5.8 20 29-48 3-22 (102)
110 3fx7_A Putative uncharacterize 54.8 70 0.0024 24.5 8.9 73 128-200 11-84 (94)
111 2dq0_A Seryl-tRNA synthetase; 54.7 56 0.0019 30.7 9.2 63 142-208 36-98 (455)
112 1j1d_B Troponin T, TNT; THIN f 54.2 42 0.0014 26.1 6.9 27 175-202 66-92 (106)
113 3gp4_A Transcriptional regulat 54.1 78 0.0027 24.8 9.2 29 146-174 83-111 (142)
114 3zcc_A HAMP, osmolarity sensor 54.1 49 0.0017 22.5 8.5 20 165-184 66-85 (114)
115 1kmi_Z CHEZ, chemotaxis protei 53.5 73 0.0025 27.2 9.0 101 122-222 26-141 (214)
116 2nrj_A HBL B protein; enteroto 53.1 1.3E+02 0.0045 27.2 12.0 54 145-198 117-174 (346)
117 3qne_A Seryl-tRNA synthetase, 53.0 32 0.0011 33.0 7.3 63 142-208 38-100 (485)
118 3fav_A ESAT-6-like protein ESX 53.0 60 0.0021 23.2 8.7 67 135-201 12-90 (101)
119 3kkj_A Amine oxidase, flavin-c 52.9 1.9 6.7E-05 32.3 -0.9 13 13-25 5-17 (336)
120 3gp4_A Transcriptional regulat 52.6 47 0.0016 26.1 7.1 9 108-116 57-65 (142)
121 2xdj_A Uncharacterized protein 52.4 59 0.002 24.1 7.2 42 150-191 5-46 (83)
122 1jcd_A Major outer membrane li 52.1 44 0.0015 23.0 5.9 12 152-163 5-16 (52)
123 2v66_B Nuclear distribution pr 51.2 87 0.003 24.6 10.3 64 122-189 6-69 (111)
124 3u59_A Tropomyosin beta chain; 50.9 75 0.0026 23.7 12.0 67 133-199 33-99 (101)
125 1fxk_A Prefoldin; archaeal pro 50.5 43 0.0015 24.5 6.2 15 55-69 17-31 (107)
126 3hd7_A Vesicle-associated memb 50.4 74 0.0025 23.5 9.8 23 134-156 6-28 (91)
127 1n7s_D SNAP-25A; neuronal snar 50.3 59 0.002 22.3 7.6 44 174-217 19-62 (66)
128 1wyy_A E2 glycoprotein; membra 49.6 1E+02 0.0035 25.5 8.8 29 182-210 64-92 (149)
129 2vs0_A Virulence factor ESXA; 49.1 64 0.0022 22.4 10.5 33 169-201 57-89 (97)
130 3ghg_B Fibrinogen beta chain; 48.5 1.2E+02 0.0041 29.2 10.4 37 112-148 81-117 (461)
131 3ol1_A Vimentin; structural ge 48.1 93 0.0032 24.0 11.2 69 143-211 33-101 (119)
132 3o0z_A RHO-associated protein 47.9 1.2E+02 0.0042 25.4 11.9 71 137-207 55-132 (168)
133 2wrg_I Hemagglutinin HA2 chain 47.8 21 0.00072 31.2 4.6 78 119-196 36-123 (222)
134 3m0d_C TNF receptor-associated 47.7 69 0.0023 22.4 7.3 15 192-206 47-61 (65)
135 1fzc_A Fibrin; blood coagulati 47.5 21 0.00071 27.2 4.0 43 147-189 3-45 (87)
136 3vkg_A Dynein heavy chain, cyt 47.4 1.1E+02 0.0038 36.0 11.4 17 28-44 1682-1698(3245)
137 1mqm_B Hemagglutinin HA2 chain 47.1 7.7 0.00026 33.9 1.7 78 119-196 36-123 (221)
138 3ghg_C Fibrinogen gamma chain; 47.0 1.9E+02 0.0065 27.3 12.3 87 138-224 25-129 (411)
139 1wt6_A Myotonin-protein kinase 46.4 91 0.0031 23.4 7.5 10 120-129 11-20 (81)
140 3u1c_A Tropomyosin alpha-1 cha 46.3 92 0.0031 23.4 11.5 65 135-199 35-99 (101)
141 2zqm_A Prefoldin beta subunit 46.2 71 0.0024 23.5 6.9 12 150-161 83-94 (117)
142 1l4a_D S-SNAP25 fusion protein 45.6 65 0.0022 23.7 6.5 59 146-204 25-83 (87)
143 2pjw_V Vacuolar protein sortin 45.6 96 0.0033 23.4 7.6 56 133-205 33-88 (91)
144 1jsd_B Haemagglutinin (HA2 cha 45.4 31 0.0011 29.2 5.1 47 119-165 36-89 (176)
145 2dq3_A Seryl-tRNA synthetase; 44.8 50 0.0017 30.7 7.0 64 142-209 35-98 (425)
146 1aq5_A Matrilin-1, CMP, cartil 44.7 51 0.0017 22.4 5.2 10 149-158 35-44 (47)
147 4etp_A Kinesin-like protein KA 44.5 55 0.0019 30.3 7.2 50 153-202 12-61 (403)
148 3ci9_A Heat shock factor-bindi 44.3 41 0.0014 22.8 4.7 38 123-160 6-47 (48)
149 2rft_B Influenza B hemagglutin 44.3 14 0.00047 31.3 2.8 47 119-165 36-89 (176)
150 2c5k_T Syntaxin TLG1, T-snare 44.0 74 0.0025 23.9 6.7 24 184-207 66-89 (95)
151 1fxk_A Prefoldin; archaeal pro 43.8 64 0.0022 23.5 6.3 16 122-137 61-76 (107)
152 2a01_A Apolipoprotein A-I; fou 43.7 25 0.00085 30.2 4.5 15 144-158 169-183 (243)
153 1x8y_A Lamin A/C; structural p 43.3 95 0.0032 22.7 8.1 64 133-203 10-73 (86)
154 1lwu_C Fibrinogen gamma chain; 43.3 46 0.0016 30.4 6.4 11 191-201 45-55 (323)
155 1lwu_A Fibrinogen alpha-1 chai 43.3 45 0.0015 26.7 5.5 42 148-189 26-67 (119)
156 1x79_B RAB GTPase binding effe 43.2 1.2E+02 0.0041 23.9 9.7 63 136-198 9-71 (112)
157 2c5k_T Syntaxin TLG1, T-snare 43.1 45 0.0016 25.1 5.4 29 120-148 37-65 (95)
158 1t3j_A Mitofusin 1; coiled coi 43.0 1.1E+02 0.0038 23.5 7.9 31 125-155 35-65 (96)
159 3zrx_A AF1503 protein, osmolar 42.5 76 0.0026 21.4 7.1 14 60-73 9-23 (115)
160 3tul_A Cell invasion protein S 42.1 57 0.0019 27.2 6.2 21 186-206 69-89 (158)
161 2bsg_A Fibritin; viral protein 41.8 30 0.001 33.6 5.1 112 122-235 43-164 (487)
162 2nps_B Syntaxin 13, vesicle-as 41.7 66 0.0022 22.5 5.8 52 172-223 6-61 (71)
163 1xwj_B Talin, metavinculin; ce 41.6 16 0.00055 21.6 2.1 24 120-143 2-25 (26)
164 3mov_A Lamin-B1; LMNB1, B-type 41.5 1.1E+02 0.0038 23.0 8.0 70 127-203 13-82 (95)
165 3c9i_A Tail needle protein GP2 41.0 1.3E+02 0.0043 26.6 8.5 55 153-207 93-147 (242)
166 3kpe_A Fusion glycoprotein F0; 41.0 82 0.0028 21.7 5.9 39 158-196 4-42 (51)
167 3u06_A Protein claret segregat 40.7 70 0.0024 29.7 7.4 55 141-202 7-61 (412)
168 3e7k_A TRPM7 channel; coiled-c 40.6 93 0.0032 21.9 7.5 45 125-173 8-52 (56)
169 3lss_A Seryl-tRNA synthetase; 40.1 1E+02 0.0035 29.5 8.5 20 142-161 42-61 (484)
170 2epl_X N-acetyl-beta-D-glucosa 40.1 2.2E+02 0.0075 27.9 11.1 92 144-236 500-594 (627)
171 4g2k_A General control protein 39.9 78 0.0027 25.5 6.5 12 184-195 65-76 (125)
172 3ku3_B Hemagglutinin HA2 chain 39.9 22 0.00075 30.1 3.4 78 119-196 36-123 (174)
173 3trt_A Vimentin; cytoskeleton, 39.2 97 0.0033 21.6 8.8 37 170-206 40-76 (77)
174 3q0x_A Centriole protein; cent 38.9 1.1E+02 0.0036 26.8 7.7 35 144-178 164-198 (228)
175 2bez_C E2 glycoprotein; coiled 38.7 63 0.0022 24.1 5.4 21 124-144 21-41 (77)
176 1wle_A Seryl-tRNA synthetase; 38.7 2.4E+02 0.0083 26.9 10.9 7 147-153 94-100 (501)
177 1qu7_A Methyl-accepting chemot 38.4 1.8E+02 0.0061 24.5 11.1 19 55-73 68-87 (227)
178 3m5g_B Hemagglutinin; influenz 38.3 12 0.0004 32.0 1.5 78 118-195 35-122 (182)
179 3edv_A Spectrin beta chain, br 38.3 1.8E+02 0.0061 24.4 9.2 58 146-204 187-244 (323)
180 1d7m_A Cortexillin I; coiled-c 38.2 1.4E+02 0.0047 23.1 8.0 76 124-206 2-80 (101)
181 1q08_A Zn(II)-responsive regul 38.1 79 0.0027 22.5 5.9 59 150-208 9-75 (99)
182 1wyy_A E2 glycoprotein; membra 37.8 19 0.00066 29.8 2.7 29 128-156 59-87 (149)
183 3f6n_A Virion-associated prote 37.7 75 0.0025 25.7 6.0 23 165-187 9-31 (129)
184 3rkg_A Magnesium transporter M 37.4 1.1E+02 0.0038 26.9 7.8 38 124-163 132-169 (261)
185 3m91_A Proteasome-associated A 37.4 96 0.0033 21.1 5.8 35 148-182 13-47 (51)
186 2ocy_A RAB guanine nucleotide 37.3 1.2E+02 0.0043 24.9 7.6 14 56-69 16-29 (154)
187 2l7b_A Apolipoprotein E, APO-E 37.3 1.1E+02 0.0039 27.3 8.0 51 137-187 100-151 (307)
188 3swk_A Vimentin; cytoskeleton, 37.3 1.2E+02 0.0042 22.2 10.9 68 143-210 13-80 (86)
189 3b5n_D Protein transport prote 37.2 1E+02 0.0036 21.5 7.7 27 186-212 31-57 (64)
190 2nrj_A HBL B protein; enteroto 37.1 1.8E+02 0.0063 26.2 9.4 76 128-203 118-193 (346)
191 3h6p_C ESAT-6-like protein ESX 37.1 58 0.002 23.2 5.0 36 166-201 54-89 (96)
192 4ack_A TSSL; protein transport 36.8 63 0.0022 27.6 5.8 64 160-224 7-70 (185)
193 2i0m_A Phosphate transport sys 36.3 1.4E+02 0.0049 23.7 7.8 80 120-199 12-108 (216)
194 4abx_A DNA repair protein RECN 36.2 1.7E+02 0.0057 23.5 8.4 71 121-191 89-162 (175)
195 2v66_B Nuclear distribution pr 36.0 1.6E+02 0.0053 23.1 12.1 72 147-218 6-81 (111)
196 1gl2_B Syntaxin 7; membrane pr 36.0 1E+02 0.0035 21.2 5.9 43 172-214 9-51 (65)
197 1mqs_A SLY1 protein, SLY1P; SM 35.7 2.1E+02 0.0072 27.8 10.2 69 113-181 328-431 (671)
198 4f23_A Hemagglutinin, H16; sia 35.6 36 0.0012 33.2 4.6 78 119-196 370-457 (515)
199 2fxo_A Myosin heavy chain, car 35.5 1.5E+02 0.0053 22.9 10.0 33 140-172 72-104 (129)
200 3nmd_A CGMP dependent protein 35.2 62 0.0021 23.7 4.8 45 149-193 24-68 (72)
201 3gpv_A Transcriptional regulat 35.1 94 0.0032 24.4 6.4 25 183-207 106-130 (148)
202 2a01_A Apolipoprotein A-I; fou 35.0 1.9E+02 0.0066 24.5 8.8 23 166-188 104-126 (243)
203 2vs0_A Virulence factor ESXA; 34.6 1.1E+02 0.0038 21.1 9.5 29 134-162 10-38 (97)
204 3he5_B Synzip2; heterodimeric 34.6 76 0.0026 21.5 4.8 34 174-207 12-45 (52)
205 2efr_A General control protein 34.1 1.9E+02 0.0066 23.7 9.8 66 133-198 87-152 (155)
206 2d4y_A HAP1, flagellar HOOK-as 33.8 2.8E+02 0.0097 25.4 10.8 41 119-159 64-104 (463)
207 2bbh_A Divalent cation transpo 33.8 93 0.0032 25.9 6.5 66 132-199 174-239 (269)
208 2wr1_A Hemagglutinin; glycopro 33.7 41 0.0014 32.8 4.6 78 119-196 376-463 (509)
209 1go4_E MAD1 (mitotic arrest de 33.6 36 0.0012 26.4 3.5 37 170-206 10-46 (100)
210 2xz3_A Maltose ABC transporter 33.4 1E+02 0.0035 27.8 7.1 39 181-219 381-419 (463)
211 2p22_A Suppressor protein STP2 33.2 1.9E+02 0.0066 24.1 8.2 21 205-225 120-140 (174)
212 1sum_B Phosphate transport sys 32.9 2E+02 0.0068 23.4 9.2 81 120-200 12-109 (235)
213 2dq0_A Seryl-tRNA synthetase; 32.7 1.4E+02 0.0047 28.1 8.0 15 140-154 48-62 (455)
214 1nfn_A Apolipoprotein E3; lipi 32.5 2.1E+02 0.0073 23.6 8.9 25 164-188 98-122 (191)
215 2eqb_B RAB guanine nucleotide 32.3 1.7E+02 0.0058 22.5 7.2 51 141-191 9-59 (97)
216 2dfs_A Myosin-5A; myosin-V, in 32.1 4.6E+02 0.016 27.4 12.9 80 123-203 957-1047(1080)
217 3qne_A Seryl-tRNA synthetase, 32.1 2.2E+02 0.0075 27.3 9.4 31 187-217 72-102 (485)
218 3plt_A Sphingolipid long chain 31.7 2.6E+02 0.009 24.5 12.4 84 125-212 61-150 (234)
219 1jth_B Syntaxin 1A; coiled-coi 31.7 1.3E+02 0.0046 21.1 7.0 53 172-224 10-66 (77)
220 1l8d_A DNA double-strand break 31.6 1.5E+02 0.0052 21.7 9.4 13 133-145 3-15 (112)
221 1wt6_A Myotonin-protein kinase 31.5 1.6E+02 0.0056 22.0 8.3 41 166-206 25-65 (81)
222 1cii_A Colicin IA; bacteriocin 31.3 2.1E+02 0.0072 28.1 9.0 81 149-230 354-441 (602)
223 3oz2_A Digeranylgeranylglycero 31.2 7.2 0.00025 32.9 -0.9 13 13-25 7-19 (397)
224 3c8u_A Fructokinase; YP_612366 30.9 45 0.0015 26.5 3.9 52 62-115 8-65 (208)
225 3ghg_B Fibrinogen beta chain; 30.9 2.9E+02 0.01 26.5 10.0 23 184-206 161-183 (461)
226 3nvo_A Zinc transport protein 30.7 39 0.0013 28.2 3.6 68 129-199 147-214 (264)
227 4ev6_A Magnesium transport pro 30.4 2.5E+02 0.0085 24.6 8.9 21 122-142 167-187 (339)
228 3mts_A Histone-lysine N-methyl 30.2 15 0.0005 25.8 0.7 22 104-125 18-39 (64)
229 2lf0_A Uncharacterized protein 30.0 23 0.0008 28.5 1.9 36 31-66 15-56 (123)
230 1rty_A YVQK protein; all alpha 30.0 1.5E+02 0.0052 24.9 7.1 46 162-207 55-102 (193)
231 1v9d_A Diaphanous protein homo 29.8 1.9E+02 0.0064 25.6 8.1 42 190-231 249-290 (340)
232 3uux_B Mitochondrial division 29.8 2.9E+02 0.01 24.4 10.7 72 120-195 150-221 (242)
233 3zrx_A AF1503 protein, osmolar 29.8 1.3E+02 0.0043 20.2 8.3 17 166-182 67-83 (115)
234 3p8q_A GP5, head protein; viru 29.5 11 0.00039 34.1 0.0 35 164-205 33-67 (385)
235 4i78_C Hemagglutinin HA2; infl 29.4 26 0.00087 29.8 2.1 78 119-196 36-123 (181)
236 2lf0_A Uncharacterized protein 29.2 1.1E+02 0.0037 24.6 5.7 55 149-212 8-62 (123)
237 2z5i_A TM, general control pro 29.1 94 0.0032 21.0 4.6 30 147-176 15-44 (52)
238 4egw_A Magnesium transport pro 29.1 95 0.0033 26.3 5.8 62 135-198 162-223 (280)
239 1nog_A Conserved hypothetical 28.8 1.1E+02 0.0036 25.6 5.9 46 162-207 50-95 (177)
240 2b9b_A Fusion glycoprotein F0; 28.4 99 0.0034 30.0 6.3 22 130-151 427-448 (497)
241 3hd7_B Syntaxin-1A; membrane p 28.3 1.9E+02 0.0066 21.8 9.8 35 188-222 37-75 (109)
242 2g2d_A ATP:cobalamin adenosylt 28.1 1.7E+02 0.0057 24.6 7.1 21 162-182 58-78 (193)
243 2r2v_A GCN4 leucine zipper; co 28.1 69 0.0023 20.5 3.5 24 152-175 2-25 (34)
244 1gd2_E Transcription factor PA 27.7 1.7E+02 0.0058 21.0 8.2 50 140-189 18-67 (70)
245 2bni_A General control protein 27.6 65 0.0022 20.6 3.3 27 152-178 2-28 (34)
246 3lss_A Seryl-tRNA synthetase; 27.4 1.6E+02 0.0055 28.1 7.6 16 139-154 53-68 (484)
247 1ez3_A Syntaxin-1A; three heli 27.3 1.2E+02 0.0041 22.5 5.5 17 128-144 14-30 (127)
248 2iub_A CORA, divalent cation t 27.1 1.1E+02 0.0036 27.3 6.0 27 4-31 21-51 (363)
249 3hd7_A Vesicle-associated memb 27.1 1.9E+02 0.0064 21.3 8.3 22 129-150 8-29 (91)
250 1fxk_C Protein (prefoldin); ar 26.8 1.7E+02 0.0057 22.3 6.3 40 133-172 4-43 (133)
251 4gip_D Fusion glycoprotein F1; 26.7 46 0.0016 31.5 3.5 53 130-193 346-398 (409)
252 3c3f_A Alpha/beta peptide with 26.5 76 0.0026 20.3 3.5 27 152-178 2-28 (34)
253 2fyz_B Fusion protein, fusion 26.5 63 0.0022 22.0 3.3 21 131-151 12-32 (48)
254 1fgj_A Hydroxylamine oxidoredu 26.4 29 0.00099 33.5 2.2 10 102-111 462-471 (546)
255 3lay_A Zinc resistance-associa 26.4 2.1E+02 0.0071 23.8 7.2 6 211-216 140-145 (175)
256 4hb9_A Similarities with proba 26.4 9.8 0.00034 32.4 -0.9 12 13-24 4-15 (412)
257 2yp5_A Hemagglutinin, haemaggl 26.3 25 0.00086 34.2 1.7 78 119-196 365-452 (503)
258 3m9b_A Proteasome-associated A 26.3 88 0.003 27.8 5.2 36 148-183 58-93 (251)
259 3r4h_A Coiled coil helix CC-TE 26.3 61 0.0021 20.3 3.0 24 169-192 6-29 (34)
260 3efg_A Protein SLYX homolog; x 26.1 1.8E+02 0.0061 21.1 6.0 51 142-192 12-62 (78)
261 1gk4_A Vimentin; intermediate 26.0 1.9E+02 0.0064 20.9 9.9 35 168-202 36-70 (84)
262 4i0x_B ESAT-6-like protein MAB 25.5 1.9E+02 0.0065 20.8 8.7 11 123-133 15-25 (103)
263 2p32_A Heat shock 70 kDa prote 25.5 2.1E+02 0.0073 21.4 7.0 21 182-202 71-91 (120)
264 3b5n_B Protein SSO1; snare com 25.3 1.7E+02 0.0058 20.2 7.0 42 172-213 10-51 (69)
265 1woz_A 177AA long conserved hy 25.3 1.8E+02 0.0061 24.1 6.6 45 162-206 49-93 (177)
266 2lw1_A ABC transporter ATP-bin 25.3 1.9E+02 0.0066 20.8 7.8 24 152-175 23-46 (89)
267 1lrz_A FEMA, factor essential 25.2 1.8E+02 0.006 26.3 7.2 24 123-146 244-267 (426)
268 3mq7_A Bone marrow stromal ant 25.2 2.6E+02 0.009 22.3 11.9 72 127-208 22-100 (121)
269 1n7s_B Syntaxin 1A; neuronal s 24.9 1.7E+02 0.0059 20.1 7.0 42 172-213 12-53 (68)
270 3kpe_A Fusion glycoprotein F0; 24.8 97 0.0033 21.3 4.1 30 124-153 16-45 (51)
271 2wuj_A Septum site-determining 24.7 66 0.0023 21.9 3.3 26 181-206 29-54 (57)
272 2vrs_A Sigma-C capsid protein; 24.7 48 0.0017 28.9 3.1 35 172-206 4-38 (211)
273 1t72_A Phosphate transport sys 24.4 2.7E+02 0.0092 22.2 9.0 81 120-200 16-113 (227)
274 2xz3_A Maltose ABC transporter 23.9 1.4E+02 0.0049 26.8 6.3 54 166-224 380-433 (463)
275 1sfc_B Protein (syntaxin 1A), 23.9 2E+02 0.0069 20.5 6.9 52 172-223 21-76 (83)
276 3m9b_A Proteasome-associated A 23.8 63 0.0022 28.7 3.8 43 151-193 54-96 (251)
277 1urq_A M-tomosyn isoform; tran 23.8 1.9E+02 0.0064 20.2 7.0 30 128-157 6-35 (63)
278 3ljm_A Coil Ser L9C; de novo d 23.8 1.3E+02 0.0046 18.4 4.2 24 139-162 3-26 (31)
279 2iub_A CORA, divalent cation t 23.8 3.8E+02 0.013 23.7 9.8 19 124-142 193-211 (363)
280 2yo3_A General control protein 23.7 3E+02 0.01 24.6 8.2 59 119-177 198-256 (268)
281 2hy6_A General control protein 23.7 85 0.0029 20.0 3.3 9 155-163 5-13 (34)
282 2jqq_A Conserved oligomeric go 23.6 59 0.002 28.2 3.4 84 130-221 4-87 (204)
283 4b4t_J 26S protease regulatory 23.6 66 0.0023 30.0 4.0 44 146-189 20-63 (405)
284 3bbp_D GRIP and coiled-coil do 23.6 1.1E+02 0.0036 22.5 4.3 29 118-146 14-42 (71)
285 2zvf_A Alanyl-tRNA synthetase; 23.5 1.3E+02 0.0044 23.6 5.2 76 126-201 7-97 (171)
286 3t37_A Probable dehydrogenase; 23.3 12 0.00039 34.1 -1.1 15 13-27 20-34 (526)
287 1svf_B Protein (fusion glycopr 23.0 87 0.003 20.0 3.4 22 131-152 10-31 (38)
288 3b5n_D Protein transport prote 22.9 2E+02 0.0067 20.0 8.1 12 133-144 10-21 (64)
289 2p22_A Suppressor protein STP2 22.8 3.3E+02 0.011 22.7 10.9 44 188-231 58-101 (174)
290 2hn1_A CORA, magnesium and cob 22.8 61 0.0021 27.2 3.4 65 132-199 175-239 (266)
291 1t98_A KICB protein, chromosom 22.6 2E+02 0.0069 25.9 6.7 21 186-206 244-264 (287)
292 1nfn_A Apolipoprotein E3; lipi 22.4 1.6E+02 0.0055 24.4 5.8 10 59-68 57-66 (191)
293 2j69_A Bacterial dynamin-like 22.4 2.2E+02 0.0076 27.8 7.7 7 75-81 231-238 (695)
294 3u06_A Protein claret segregat 22.4 2.4E+02 0.0082 26.1 7.6 54 122-179 6-59 (412)
295 1u00_A HSC66, chaperone protei 22.4 3.4E+02 0.012 22.6 8.9 68 138-207 137-209 (227)
296 2pnv_A Small conductance calci 22.4 67 0.0023 21.3 2.8 15 197-211 20-34 (43)
297 1q08_A Zn(II)-responsive regul 22.4 1.6E+02 0.0056 20.8 5.2 35 144-178 39-73 (99)
298 3gpv_A Transcriptional regulat 22.3 2.4E+02 0.0082 22.0 6.6 29 146-174 97-125 (148)
299 3qfl_A MLA10; coiled-coil, (CC 22.3 1.8E+02 0.0061 21.8 5.6 26 185-210 58-83 (115)
300 2qyw_A Vesicle transport throu 22.3 2.5E+02 0.0084 21.0 7.7 61 132-192 14-76 (102)
301 4dpv_Z Protein (parvovirus coa 22.2 25 0.00084 34.7 0.8 11 101-111 522-532 (584)
302 3pp5_A BRK1, protein brick1; t 22.0 69 0.0024 23.5 3.0 26 181-206 47-72 (73)
303 2j69_A Bacterial dynamin-like 21.9 4.3E+02 0.015 25.7 9.7 25 150-174 365-389 (695)
304 1ses_A Seryl-tRNA synthetase; 21.9 3.9E+02 0.013 24.6 8.9 10 144-153 49-58 (421)
305 1lwu_A Fibrinogen alpha-1 chai 21.9 1.3E+02 0.0045 24.0 4.9 41 136-179 21-61 (119)
306 2ieq_A S glycoprotein, spike g 21.7 3E+02 0.01 21.7 8.2 28 123-150 5-32 (109)
307 2gtl_N Extracellular hemoglobi 21.7 1.2E+02 0.0043 26.4 5.1 12 152-163 11-22 (220)
308 3dyt_A Sorting nexin-9; 3-heli 21.6 3.8E+02 0.013 23.9 8.6 25 172-196 255-279 (366)
309 1r8e_A Multidrug-efflux transp 21.5 2.2E+02 0.0076 23.5 6.6 9 108-116 61-69 (278)
310 2gr7_A Adhesin; trimeric autot 21.4 1E+02 0.0036 24.4 4.3 28 132-163 24-51 (129)
311 1hx1_B BAG-1, BAG-family molec 21.4 2.2E+02 0.0076 22.5 6.1 44 122-165 14-63 (114)
312 3abi_A Putative uncharacterize 21.2 12 0.0004 33.2 -1.6 16 11-27 18-33 (365)
313 3u0c_A Invasin IPAB, 62 kDa an 21.2 3.9E+02 0.013 22.8 10.0 45 164-208 92-139 (201)
314 1gmj_A ATPase inhibitor; coile 21.0 2.7E+02 0.0091 20.9 6.4 7 143-149 43-49 (84)
315 1xsv_A Hypothetical UPF0122 pr 21.0 2.6E+02 0.0088 20.7 7.1 34 123-156 43-76 (113)
316 1lq7_A Alpha3W; three helix bu 20.9 1.2E+02 0.0041 21.5 4.0 19 185-203 47-65 (67)
317 1ud0_A HSC70, 70 kDa heat-shoc 20.9 2.2E+02 0.0074 20.8 5.8 16 121-136 6-21 (113)
318 1xwm_A PHOU, phosphate uptake 20.9 3.2E+02 0.011 21.7 9.1 80 120-199 12-108 (217)
319 3l4f_A RHO guanine nucleotide 20.8 2.2E+02 0.0074 20.3 5.3 42 169-210 11-52 (61)
320 2olt_A Hypothetical protein; s 20.8 3.4E+02 0.012 22.0 9.7 17 190-206 161-177 (227)
321 1h2v_C 80 kDa nuclear CAP bind 20.7 2.3E+02 0.0077 28.5 7.5 84 124-207 622-711 (771)
322 1cxz_B Protein (PKN); protein- 20.6 2.7E+02 0.0093 20.8 8.6 62 141-206 22-83 (86)
323 4abm_A Charged multivesicular 20.6 2.5E+02 0.0085 20.4 9.1 65 141-206 10-79 (79)
324 3p8c_D Wiskott-aldrich syndrom 20.6 1.6E+02 0.0054 26.4 5.7 16 113-128 23-38 (279)
325 1wvt_A Hypothetical protein ST 20.5 70 0.0024 26.5 3.2 44 162-207 49-92 (172)
326 3l39_A Putative PHOU-like phos 20.4 3.3E+02 0.011 22.5 7.5 77 130-206 98-178 (227)
327 3c98_B Syntaxin-1A; protein co 20.2 3.4E+02 0.012 21.8 9.2 21 126-146 47-67 (279)
No 1
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=94.77 E-value=0.057 Score=41.26 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=50.4
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 026425 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (238)
Q Consensus 118 yVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (238)
|||+|-+..-.... .++..|.+|...+...+.-|-|-+..=-+++.+++-....-|.-++.|-....+
T Consensus 8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888777642221 355555666666666555555555544556666665556667777788888888
Q ss_pred hhhhhhhhh
Q 026425 198 LDGKIDSLA 206 (238)
Q Consensus 198 Le~Ki~~ie 206 (238)
+..++|.||
T Consensus 76 ~nkRLDkle 84 (85)
T 2ba2_A 76 INKRLDNLE 84 (85)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhccC
Confidence 888998886
No 2
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=94.10 E-value=0.6 Score=36.45 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (238)
+..|++.|..|++.++..+++..+....++++++.+...+.+.
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999999999988888888888887777655543
No 3
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=94.08 E-value=0.88 Score=36.52 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=71.2
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHH---HHHH-hhhc----------CCCeEEEeCCCCCcceeehhhh
Q 026425 30 KLPELLRELQSLVERLSKSGEQDNFTDAIKDQLNRL---KFEC-QRAS----------SGQIFVRNENSGGNATSLMIPA 95 (238)
Q Consensus 30 ~Lsd~~g~lq~~~k~~~k~g~~~~~~d~L~aQV~~L---~~El-~las----------~r~iTvvn~~sGg~~~~~ivpa 95 (238)
.+++=+..|...+..++. ....|..+.++| ...+ +.-. ...-+-|.-|++--..+-|.|.
T Consensus 6 ~~~~~l~ql~~~~qql~~------~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~ 79 (151)
T 2zdi_C 6 QNNKELEKLAYEYQVLQA------QAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDK 79 (151)
T ss_dssp SSTTHHHHHHHHHHHHTT------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCT
T ss_pred hhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCC
Confidence 455556666666666653 366677777777 5544 2211 2234445655551111111111
Q ss_pred h-HhhhhheeeeeeeccccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 026425 96 A-TLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (238)
Q Consensus 96 A-~vGavGYgYmwWKGws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (238)
= ++.-+|.||+-.+- +..|+..|..||+.+...+++..+..+.+++++
T Consensus 80 ~~V~v~lG~g~~vE~~-------------------------------~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i 128 (151)
T 2zdi_C 80 NNAIVSVGSGYAVERS-------------------------------IDEAISFLEKRLKEYDEAIKKTQGALAELEKRI 128 (151)
T ss_dssp TEEEEEEETTEEEEEE-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCeEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12358899988874 578888899999999888888877777777777
Q ss_pred HHhhhhHHH
Q 026425 175 EEACDDLFK 183 (238)
Q Consensus 175 ~~v~~d~~~ 183 (238)
+.+...+.+
T Consensus 129 ~~~~~~l~~ 137 (151)
T 2zdi_C 129 GEVARKAQE 137 (151)
T ss_dssp HTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666654444
No 4
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=93.37 E-value=1.3 Score=34.54 Aligned_cols=79 Identities=14% Similarity=0.243 Sum_probs=62.7
Q ss_pred HHHHHhh---HHHHHHHHHHHHHHHHHHHhhH----HhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 026425 129 SNLNKHL---ESVTEALTVAKKHLTQRIQNLN----DKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (238)
Q Consensus 129 ~sv~kqL---e~Vs~sL~~tKkhLsqRI~~vd----~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (238)
+.++||| .+..+.+..+|+.|..+|+.+. .|++++.+....++.++..=..++..+..+++.....=..|..+
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~ 90 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 4667788999999999999865 56788888888888899888888888888888888777777777
Q ss_pred hhhhhh
Q 026425 202 IDSLAD 207 (238)
Q Consensus 202 i~~ie~ 207 (238)
++.++.
T Consensus 91 ~~~l~~ 96 (107)
T 2no2_A 91 FAELEK 96 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 5
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=91.76 E-value=2.3 Score=40.83 Aligned_cols=96 Identities=13% Similarity=0.252 Sum_probs=59.3
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH-----Hh
Q 026425 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKK---HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF-----KV 184 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKk---hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~-----~i 184 (238)
+.|+|=-..++....+..+-..|++++..-++++. +|+..+...+.++.++.+..+.-.+++.+.+.-+. ++
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 48999999999999999999999999876666553 35555555555555544444444444433332222 23
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 185 EHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
...+..++..++.|..||..+|.+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~ 190 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666655544
No 6
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=91.05 E-value=2.7 Score=36.11 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLND 158 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~ 158 (238)
++.|+..++..+..+.+.++..-.++..-++.+..
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~ 39 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEK 39 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=90.73 E-value=2.7 Score=39.68 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=68.2
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 026425 113 FADLMYVTRKSMATAVSNLNKHLESVT-------EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av~sv~kqLe~Vs-------~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (238)
+-++|==+.|++.+.++.+...|+.++ .-+..++..|.+|.....+.=+-..|.+..++..+..+++.+..-=
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666677888888888888877663 4455666666667666666666677777777777777777776533
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 186 HNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
-+|..|+..|+.+-.||.+||..-|
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777777777777775543
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.60 E-value=3.6 Score=40.43 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=71.2
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh-------HHHHHHHHHHHHHHHHHhhhhHHHhh
Q 026425 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK-------VEKQNEISKDIRKNVEEACDDLFKVE 185 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~k-------ld~~~eis~~i~~eV~~v~~d~~~i~ 185 (238)
+-++|-=+-|++.+-++.|-.+|++++..=..+-....+..+.|..+ -+-..|++.+.+..+..+++.|.+--
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999998766555555444444444333 34445566677777777777777655
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhHH
Q 026425 186 HNLKDLQSMIYCLDGKIDSLADKQDI 211 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (238)
.-++.||..|+.+-.||.+||.--|+
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888899988855443
No 9
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=90.59 E-value=2.5 Score=34.85 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH------------HhhhhHHHhhhhHHHHHHHHH--------hhh
Q 026425 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE------------EACDDLFKVEHNLKDLQSMIY--------CLD 199 (238)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~------------~v~~d~~~i~~dv~~v~~~V~--------~Le 199 (238)
.-+..-|++|+.+.|+|-.++|+.+.+.+..|++|. .+..|+.....|++.+.+.+. .+|
T Consensus 10 ~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE 89 (141)
T 3okq_A 10 MYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWE 89 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 346778999999999999999999999999988764 466677777777777766664 367
Q ss_pred hhhhhhhhhhHHHHHH
Q 026425 200 GKIDSLADKQDITNIG 215 (238)
Q Consensus 200 ~Ki~~ie~kQd~tn~G 215 (238)
..|..|..-|+|-|.=
T Consensus 90 ~EL~~VceEQqfl~~Q 105 (141)
T 3okq_A 90 AELDKVCEEQQFLTLQ 105 (141)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888888876654
No 10
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=90.04 E-value=6.5 Score=33.72 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=39.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 130 sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
.+...+++++..+...-..+....+.+....++..+.+..+.+.+.+....+.++...+..+...+..+..++.
T Consensus 4 qva~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T 3g67_A 4 EVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIR 77 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666555555555555555555555555555555554444444444444443333
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.43 E-value=2.4 Score=36.61 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
|...+++|-..|+.+.+.+.....-...++.++.++...+.++..|++.++..+...+.++..
T Consensus 23 l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 23 LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344444444444444444444444444444444444444444444444444444444433
No 12
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=87.57 E-value=6 Score=28.15 Aligned_cols=69 Identities=14% Similarity=0.299 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 123 SMATAVSNLNKHLESVTE-ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~-sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
.|+.+.+.|=.|-|.+-. .-+.+..-...+++.+........+-....+.|+++++..+..+..+++++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666665443 334555566777777766666666666666777776666666666665554
No 13
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.35 E-value=4 Score=37.50 Aligned_cols=65 Identities=14% Similarity=-0.004 Sum_probs=49.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Q 026425 157 NDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (238)
Q Consensus 157 d~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (238)
....+++.++.++.+.+-..++.|.+.++.+++.+++.-..++..+.+++..=.-++.-...+|.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 413 RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 34555666677788888888888888888888888888888888888777776667766666664
No 14
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=87.26 E-value=9.1 Score=37.10 Aligned_cols=102 Identities=14% Similarity=0.195 Sum_probs=85.4
Q ss_pred eccccchhHHHhHhhHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 026425 109 KGLSFADLMYVTRKSMATAVSNLNKHLESV-------TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (238)
Q Consensus 109 KGws~sDlMyVTkr~ms~Av~sv~kqLe~V-------s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (238)
-|--+-++|-=+.|+..+.++.+.+.|+.+ +.-+..++.-|.+|.....+.=+-..|.+..++.....+++.+
T Consensus 48 SGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 48 SGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRV 127 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 355677888889999999999999988877 4557778888888888888888888999999999999999988
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
..--..+..|+..|+.+-.||.+||.--+
T Consensus 128 d~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 128 ATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76558899999999999999999985443
No 15
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=87.20 E-value=4.2 Score=37.15 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (238)
.|.+++..+-..=..+-++|..+.+.+.+-|++.-. ..|+......+++++++++..+.+++-.-..-++.|.+|-..
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRA-VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMAS 433 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHH-HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHH
Confidence 344455444444345677788888888877777644 447778888899999999999999888887777777666443
No 16
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=85.93 E-value=2.1 Score=38.64 Aligned_cols=58 Identities=16% Similarity=0.366 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
...|+++++..++....+|+..|+.++++...=..++.+.|.++-..+-.|..+++.+
T Consensus 199 Nv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T 2yo3_A 199 NYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARI 256 (268)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778899999988888888877766554444444444444444444444444433
No 17
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.77 E-value=1.9 Score=34.01 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=37.6
Q ss_pred HHHhhHHHHHHHHHHHHH---HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 131 LNKHLESVTEALTVAKKH---LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 131 v~kqLe~Vs~sL~~tKkh---LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
+.++...-++.+..+|.+ +..+|+.|...++.+...-......+.++. .+...+++.++..+..||.-+..+
T Consensus 20 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e---~~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 20 LQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE---QRGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333333444455555543 345677777777777666666666666665 344556677777777777766654
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.50 E-value=14 Score=31.24 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=45.9
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (238)
.-+.+.++...+-+.+-++...|..=|+--+ .+|..+..++. ....|+..++...++.-.|...+++.+.
T Consensus 56 ~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~-------~L~~El~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 56 RNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARIT-------SLQEEVKHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555566666666665555443222 22222222222 2345566666666667778888888888
Q ss_pred hhhhhhhhhh
Q 026425 197 CLDGKIDSLA 206 (238)
Q Consensus 197 ~Le~Ki~~ie 206 (238)
.||..-.+++
T Consensus 129 ~lEKe~a~~e 138 (168)
T 3o0z_A 129 HSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 8888777666
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.49 E-value=9.1 Score=30.86 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=49.7
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (238)
.+.++++.+...+++...=....+.++...+..++....++..++.-+..|+.++.++|.+.+.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677777777777777777788888888888888888888888888888888888877654
No 20
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=85.28 E-value=0.69 Score=29.11 Aligned_cols=28 Identities=18% Similarity=0.488 Sum_probs=24.5
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
+++..|+.+++.+|..|..+++++|+.-
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999764
No 21
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=84.64 E-value=2.9 Score=33.54 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=14.9
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAK 146 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tK 146 (238)
+++.|.++|.++..+|+.+.+++..+.
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555544
No 22
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=84.39 E-value=5.6 Score=37.61 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 026425 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (238)
.+....-=+|..+.-..+...-.+|.+||.-|..+++.+..-.+..|..|..++.++.++..||+.
T Consensus 94 ~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 94 VELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444445567778899999999988887777888888888888888888754
No 23
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.20 E-value=16 Score=30.36 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=39.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 127 Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
+|+.. +.+.+.-..|+.-..++..||..++..+.+-....+.+++|.. .++--..-+|.|+..++
T Consensus 59 ~vs~~-~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~--------------aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 59 IVSHD-DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALI--------------SGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 44444 3444566667777777777777777776666555555555554 44445555666666665
Q ss_pred h
Q 026425 207 D 207 (238)
Q Consensus 207 ~ 207 (238)
.
T Consensus 124 ~ 124 (152)
T 3a7p_A 124 K 124 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 24
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.13 E-value=12 Score=34.02 Aligned_cols=42 Identities=7% Similarity=0.189 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHhhHHhHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEA------LTVAKKHLTQRIQNLNDKVEKQ 163 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~s------L~~tKkhLsqRI~~vd~kld~~ 163 (238)
.+...|++.+.+++++.-+. .+.+.++|++.|+++.+++-+.
T Consensus 369 ~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 369 QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDV 416 (471)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHH
Confidence 35566666666666555443 3345667889999888887654
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.77 E-value=11 Score=35.02 Aligned_cols=36 Identities=8% Similarity=0.157 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd 157 (238)
..+.+.+..+-..+++....++..++++..|.+...
T Consensus 459 ~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 459 NELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 346677888888888888888888888887777665
No 26
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=83.70 E-value=15 Score=29.15 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=14.4
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
+.++..+...+..+..++..+...+..++..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 68 QEKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444333
No 27
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=83.48 E-value=2.7 Score=31.49 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=14.8
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNV 174 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV 174 (238)
.|..||..+...|++...=....+.|+
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666655555555555555444
No 28
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.39 E-value=11 Score=28.38 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 026425 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (238)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (238)
++.|..|+++..+.+...+-++.+++++-.....+.+.++.-...|+....++..-|..-...|..|
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555556666666665555555555555555555555555544444444444333
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.33 E-value=2 Score=34.00 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=38.9
Q ss_pred HHHHHhhHHHHHHHHHHHHH---HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 129 SNLNKHLESVTEALTVAKKH---LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 129 ~sv~kqLe~Vs~sL~~tKkh---LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
+.+.++...-++.+..+|.+ +..+|+.|...++.+...-....+.+.++. .+...+++.++..+..||.-+..+
T Consensus 20 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e---~~~~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 20 EELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK---GRYCMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445666666654 456788888888877777777777776666 345567777777788888777655
No 30
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=83.21 E-value=5.2 Score=30.50 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=41.7
Q ss_pred chhHHHhHhhHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 026425 114 ADLMYVTRKSMATAVSNLNKHLESVTEALT-VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (238)
Q Consensus 114 sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~-~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (238)
|+++----+.+...++++++.++++..... ..|+. .|..++..|||..|+..++.-|+..+-
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~---~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKK---LVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444556677777777777777643322 34433 366777889999999999888876653
No 31
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=83.15 E-value=15 Score=28.88 Aligned_cols=72 Identities=15% Similarity=0.402 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM 194 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~ 194 (238)
....++++=++.++.-|-+|++--+.|.| |++....+++|..+=-+++.+++.++-.+.-.+..++..+...
T Consensus 31 ~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 31 AIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45677788888888888888755555544 5544444555544444555566666666666666666555443
No 32
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=83.00 E-value=5.8 Score=29.92 Aligned_cols=53 Identities=6% Similarity=0.191 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (238)
+.+...++++...|+++...=...|+. -|..++..+|+..|+..++.-||..+
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~---~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRNT---TLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455677788888887776333334443 36777889999999999999999888
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.88 E-value=9 Score=33.00 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=30.4
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhh--hhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 026425 153 IQNLNDKVEKQNEISKDIRKNVEEAC--DDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (238)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~--~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (238)
+.++...+++..+-.+..++....++ .++..+..+++....-...||.+|-++...-+....-+
T Consensus 62 ~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 62 VSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444432 23444555555555555555555555555554444333
No 34
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=82.25 E-value=6.1 Score=27.42 Aligned_cols=51 Identities=8% Similarity=0.231 Sum_probs=27.7
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 026425 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (238)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (238)
+.++.|..++..++.++..|.+|+.+=-.=+.++..+++.....+..--.|
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~r 59 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARR 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666555544555555555554444433333
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.03 E-value=29 Score=32.25 Aligned_cols=8 Identities=13% Similarity=-0.263 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 026425 216 MYLLCNFV 223 (238)
Q Consensus 216 V~~Lc~f~ 223 (238)
+.-|-+.+
T Consensus 574 ~~~l~~~~ 581 (597)
T 3oja_B 574 VKQLEAKK 581 (597)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 33344333
No 36
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=81.77 E-value=6.7 Score=26.58 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=18.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 026425 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (238)
Q Consensus 156 vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (238)
+..+++++.+.-..++.+..+.+..+.+.-.++..++.-+..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334433333334444444433444444444444444333333
No 37
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.83 E-value=14 Score=26.85 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=29.3
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
..|.+.+..++.+...-.....++|..++..+..+..|++....-+.....|+..
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555556555555555555555555555444443
No 38
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=79.94 E-value=23 Score=34.03 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=5.3
Q ss_pred HHHHHHHHhhhhhh
Q 026425 189 KDLQSMIYCLDGKI 202 (238)
Q Consensus 189 ~~v~~~V~~Le~Ki 202 (238)
++++..+..||.++
T Consensus 178 ~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 178 DSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 39
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=79.72 E-value=6.9 Score=34.47 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=62.9
Q ss_pred cccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHH------HH---HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 026425 111 LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKK------HL---TQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (238)
Q Consensus 111 ws~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKk------hL---sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (238)
+|.|=+|||-... .|--+-.+|-=|-=+++..+.-| .| ..||..+..++|+..+=+-...+.+..+.--+
T Consensus 36 FS~sYllyVi~qg-tDvG~VA~KANeAGqgAYdAQVrNDEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Ri 114 (242)
T 3c9i_A 36 FSKSYLLYVIAQG-TDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRV 114 (242)
T ss_dssp SCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhccc-chHHHHhhhhhhhhhhhhHHHhcCcccceeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhhee
Confidence 5667788987654 23333344444433444433222 23 57888999999988876666666777777777
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 182 FKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
.....|+..++.-|..||+++...|.+
T Consensus 115 t~~e~~i~~l~~~v~~ld~~vt~~et~ 141 (242)
T 3c9i_A 115 TTAEGEIASLQTNVSALDGRVTTAENN 141 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhhhhhhhhhcccccccccc
Confidence 777788888877777777777655543
No 40
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=79.54 E-value=19 Score=27.67 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=41.4
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 026425 176 EACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGK 226 (238)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~ 226 (238)
..+.-+..||.++-.|+...+.||.-+. .|.-++.-..-||+|.+..
T Consensus 34 ~lk~~L~Kig~Ei~~l~eLLn~~E~eV~----~Qe~~~~sLKEL~~s~e~d 80 (91)
T 4aj5_A 34 TLKTVLNKIGDEIIVINELLNKLELEIQ----YQEQTNNSLKELCESLEED 80 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999999998 8999999999999998743
No 41
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=79.27 E-value=4.5 Score=33.01 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=55.7
Q ss_pred ccchhHHHhHhhHHH------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 026425 112 SFADLMYVTRKSMAT------AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (238)
Q Consensus 112 s~sDlMyVTkr~ms~------Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (238)
+..|.+....+.|.. ..+.+...|+.++..|..+-..|..-.++++--=+.. ..+.+.+..++.=--+.|
T Consensus 67 ~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL----~~ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 67 NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEAL----DRVEARLSALSKLKNKYG 142 (175)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH----HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH----HHHHHHHHHHHHHHHHcC
Confidence 566777777777764 3455666677777777777777776666665322222 222333444443334556
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhh
Q 026425 186 HNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
.+++.|-..-..+..++..++..
T Consensus 143 ~~~eell~~~~~~~~eL~~l~~~ 165 (175)
T 4abx_A 143 PTLEDVVEFGAQAAEELAGLEED 165 (175)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCc
Confidence 67777777777777777766543
No 42
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=78.75 E-value=11 Score=27.67 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=13.7
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNV 174 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV 174 (238)
.|..||..+...|++...=....+.++
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~El 44 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSNL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555544444444444
No 43
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=78.59 E-value=16 Score=26.12 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=39.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh-----HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDK-----VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~k-----ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (238)
+...++++.+..+.|......|.+.|+.|... -+...+.-...+..+..+..-|..|...+...-...+.-|.++
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~ 92 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADI 92 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555544221 1222333444555566666666666666666666666666555
Q ss_pred h
Q 026425 203 D 203 (238)
Q Consensus 203 ~ 203 (238)
.
T Consensus 93 A 93 (98)
T 3gwk_C 93 A 93 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.52 E-value=8.2 Score=30.25 Aligned_cols=59 Identities=7% Similarity=0.227 Sum_probs=22.2
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
..+++.+........+-...++.++++++..+.....++++++..-..||..|...|..
T Consensus 14 ~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 14 QTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555555555555555555555555555443
No 45
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=78.26 E-value=14 Score=25.53 Aligned_cols=46 Identities=2% Similarity=0.220 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (238)
+.-+.++.|..++..++.++..|-+|+..=-.=+..|..+++....
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~ 52 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444555555555555666666655554444334444444444433
No 46
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=78.19 E-value=2.1 Score=28.74 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhHHhHHHHHH
Q 026425 145 AKKHLTQRIQNLNDKVEKQNE 165 (238)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~e 165 (238)
+|.+|-|.|++||..++...+
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~ 23 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQ 23 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999998876633
No 47
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.52 E-value=20 Score=26.92 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=38.4
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 026425 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (238)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (238)
....-|.+.+..++.+..+-.....++|..++..+..+..|++....-....-.++..-+..-.-+-..|..|
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555555666666666666666666655555555555554443333333333333
No 48
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=76.37 E-value=20 Score=26.40 Aligned_cols=41 Identities=2% Similarity=0.196 Sum_probs=17.3
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
+.++.|...+..++.++..|-+||..=-.=|..|..+++..
T Consensus 29 ~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~ 69 (87)
T 1sfc_D 29 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSN 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444444444444444444443333333333333333
No 49
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.20 E-value=9 Score=30.14 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=15.7
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
++.+........+-...++.++++++..+.....++++++..-..||..|...|.
T Consensus 19 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 19 TEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444444444444444443
No 50
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=76.12 E-value=23 Score=26.82 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=29.9
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
.-|.+.+..++.+...-.....++|..++..+..+..|++..+..+...-.++..-
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555666666666666666665555555444444433
No 51
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=75.81 E-value=13 Score=26.98 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=25.1
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026425 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNF 222 (238)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f 222 (238)
..|+.+++.=..++..|+.++++...+=..++.-+..+..-
T Consensus 36 ~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 36 QRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666666666666666666665543
No 52
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=75.77 E-value=16 Score=24.68 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (238)
++.-......-.+++..+++....++++..+-...+++++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555554444444444444333
No 53
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=74.92 E-value=31 Score=32.50 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=41.5
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh--------HHHHHHHHHHHHHHHHHhhhhHHHh
Q 026425 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK--------VEKQNEISKDIRKNVEEACDDLFKV 184 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~k--------ld~~~eis~~i~~eV~~v~~d~~~i 184 (238)
+.|++===.+++-.-+..+-+.|++|+.+-+.++..+ +-|+....+ .+...+-++.+.+++..+..-+.+.
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lv-k~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~ 103 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLI-QHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAH 103 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 3444444455555555555555555555444444222 222222111 2223333444455555555444444
Q ss_pred hhhHHHHHHHHHhhhhhhhhh
Q 026425 185 EHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~i 205 (238)
...+..++..+..++.||..+
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 104 ENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 455555555555555555444
No 54
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=74.83 E-value=18 Score=24.99 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=38.3
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
|.+++.++..|+....-+...-..+|......++.....-..-+..+..||.|+.+++
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 5566667777777665555555556666666666665555555777888888877655
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.63 E-value=12 Score=36.94 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH----HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 026425 138 VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI----RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (238)
Q Consensus 138 Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i----~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (238)
+...|-++-+-|+.||+.|-.++++...-.+.+ +.....++.++.+.++.-..+.++-+.||.+|..|+.+-+--.
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788889999999999999999886665554 4556667777777774444444445588888888877666555
Q ss_pred HHHHHHHHHhh
Q 026425 214 IGMYLLCNFVD 224 (238)
Q Consensus 214 ~GV~~Lc~f~~ 224 (238)
.=|..|=.-++
T Consensus 131 snIrvLQsnLe 141 (562)
T 3ghg_A 131 QHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 56
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=74.63 E-value=21 Score=26.70 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=40.1
Q ss_pred hhHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 122 KSMATAVSNLN---KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 122 r~ms~Av~sv~---kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
++|.+-+.++= ++|-..-.+|.-+|+.|..|+|.|.+.-+ .+..++.+++++-..+
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e---------------------~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKD---------------------VLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHH
Confidence 34555555553 34444556788888888888877766533 3456677777777788
Q ss_pred hhhhhhhhh
Q 026425 199 DGKIDSLAD 207 (238)
Q Consensus 199 e~Ki~~ie~ 207 (238)
+.|+.++|.
T Consensus 64 ~~ri~elEe 72 (77)
T 2w83_C 64 EEKNRELEE 72 (77)
T ss_dssp HHHC-----
T ss_pred HHHHHHHHH
Confidence 888877764
No 57
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.59 E-value=25 Score=26.41 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
.|+.|..|-....+=...++.....+.....+...+....+..+++|=+||+.|
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~v 81 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 444444443333333333444444466677778888888888888888877643
No 58
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=74.52 E-value=24 Score=26.26 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=36.2
Q ss_pred HHHHHHhhHHHHHHHH---HHHHHHHHHHHhhHHhHHHHH-------------------HHHHHHHHHHHHhhhhHHHhh
Q 026425 128 VSNLNKHLESVTEALT---VAKKHLTQRIQNLNDKVEKQN-------------------EISKDIRKNVEEACDDLFKVE 185 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~---~tKkhLsqRI~~vd~kld~~~-------------------eis~~i~~eV~~v~~d~~~i~ 185 (238)
...+.+.++++.+.|. .-+..+.++|+.+...+.... +....+++++.+++..+..+.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~ 84 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLI 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555444433 344555566666665554432 334444445555544444444
Q ss_pred hhHHHHHHHHHhhhhhhh
Q 026425 186 HNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~ 203 (238)
..+..+..-+..|+.++.
T Consensus 85 ~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 85 DRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 59
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=74.45 E-value=34 Score=32.37 Aligned_cols=95 Identities=13% Similarity=0.201 Sum_probs=58.5
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------HHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 026425 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNL-------NDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~v-------d~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (238)
+.|+|.==.++..+-+..+...|++++.+=+.|+..+..==+.. .+..|-..+-++.+.+|+.....-+.+..
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56788777888888888888888888877777755443221111 11234445555555566665655566666
Q ss_pred hhHHHHHHHHHhhhhhhhhhhh
Q 026425 186 HNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
..|..++..+...+.||..++.
T Consensus 105 ~~i~~l~~~~~~~~~~i~~L~~ 126 (411)
T 3ghg_C 105 SSIRYLQEIYNSNNQKIVNLKE 126 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655443
No 60
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=74.29 E-value=4.4 Score=30.84 Aligned_cols=69 Identities=14% Similarity=0.287 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh--------hhHHHhhhhHHHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC--------DDLFKVEHNLKDLQS 193 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~--------~d~~~i~~dv~~v~~ 193 (238)
+.+...++++.+.+.++...=...|+. -|..++..|||..|+..++.-||..+- ..+.....|++.++.
T Consensus 12 ~df~~l~~~i~~kl~~i~~~~geerk~---~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 12 QDFAVLTAEITSKIARVPRLPPDEKKQ---MVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888765432233443 377788899999999999998886653 344445555555443
No 61
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=74.20 E-value=7.8 Score=28.52 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=35.0
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
..|.+||..|..|+--|........+.|++-+ .+|+.++.-+.-|-.|+..++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq-------~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADAR-------LTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 45778888888888888777777777776666 4455566666666777776664
No 62
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=73.88 E-value=20 Score=25.15 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 026425 130 NLNKHLESVTEALTVAKKHLTQRIQNL 156 (238)
Q Consensus 130 sv~kqLe~Vs~sL~~tKkhLsqRI~~v 156 (238)
.+++++.+..+.|......|.+.++.|
T Consensus 16 ~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 16 GVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 63
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=73.23 E-value=29 Score=33.65 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (238)
|.|....-=+|..+.-..+...-.+|..||.-+..+++.+..-....|..|...+.++.++..||..
T Consensus 91 ~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 91 TINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444556778889999999988877777777777777777777777654
No 64
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=73.02 E-value=17 Score=27.14 Aligned_cols=26 Identities=4% Similarity=0.087 Sum_probs=15.7
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHH
Q 026425 170 IRKNVEEACDDLFKVEHNLKDLQSMI 195 (238)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V 195 (238)
.+.||..+++.++....+++.+...-
T Consensus 32 Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 32 NQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35566666666666666666665433
No 65
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=73.01 E-value=36 Score=35.56 Aligned_cols=15 Identities=7% Similarity=0.335 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHhh
Q 026425 121 RKSMATAVSNLNKHL 135 (238)
Q Consensus 121 kr~ms~Av~sv~kqL 135 (238)
+..|.+-+..+...|
T Consensus 923 ~~~LE~kl~eLq~rL 937 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKI 937 (1080)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 66
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=71.44 E-value=25 Score=26.22 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
.+.+..+++|++.+..+=.+..+-....++++.+-+..-++...+++ ...+.|++||..+..
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk---~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG---RAAQLLDVSLFELSE 66 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHH
Confidence 34455666666666666555555555555555555554455544443 345667777777654
No 67
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=71.00 E-value=24 Score=24.70 Aligned_cols=30 Identities=10% Similarity=0.202 Sum_probs=17.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 026425 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNL 156 (238)
Q Consensus 127 Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~v 156 (238)
.+..+++++.+..+.|......|.++|+.|
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666665
No 68
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=70.79 E-value=10 Score=25.74 Aligned_cols=36 Identities=11% Similarity=0.364 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~k 159 (238)
|.+.+..+-..+-.+-....++..+|.|||..|..+
T Consensus 10 Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555556666666678999999999988765
No 69
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=70.28 E-value=25 Score=24.61 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=24.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~ 163 (238)
.+|+++...+..+...|.+.+++|...++..
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888777765
No 70
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=70.26 E-value=21 Score=27.62 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhHHhHHH
Q 026425 144 VAKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~ 162 (238)
.++++|...|+.++.+++.
T Consensus 47 ~t~~eL~~EI~~L~~eI~~ 65 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQ 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544433
No 71
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=69.89 E-value=13 Score=26.97 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=39.2
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
+.++.|..++..++.++..|.+||.+=-.=|..+..+++.....+..--.|+..+-.
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677777777777777776667777777777777766666666665543
No 72
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=69.71 E-value=30 Score=25.32 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=23.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEI 166 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~ei 166 (238)
-+|++....|..+.++|.+.|+.|+..++.....
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566667777777777777777777777766555
No 73
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=69.57 E-value=60 Score=28.73 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 026425 56 DAIKDQLNRLKFEC 69 (238)
Q Consensus 56 d~L~aQV~~L~~El 69 (238)
..|...++++...|
T Consensus 37 g~l~~~~n~~~~~l 50 (341)
T 3zx6_A 37 GILAKSIERLRRSL 50 (341)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555555
No 74
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.45 E-value=29 Score=25.07 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=48.5
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHH
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (238)
|..+|+.+-...|...+=......++.+......+...++.+++..+..||.-++..+..=.-++.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666677777777777888899999999999999988887766444443
No 75
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=69.23 E-value=28 Score=27.21 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
|.-|.=.||.|-++|+++.|.-.+++.+..+-..+++........++.-+..|...|.
T Consensus 25 Ksal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 25 KTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566999999999999999999999988888888877777777777766666554
No 76
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=68.83 E-value=26 Score=25.77 Aligned_cols=49 Identities=12% Similarity=0.035 Sum_probs=30.0
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 026425 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (238)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (238)
..-|..++.=--.||.+++.=..++..|+.++++...+=..+|.-+..|
T Consensus 35 s~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 35 SGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455667777777777777777777777666666655443
No 77
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=67.36 E-value=53 Score=38.53 Aligned_cols=102 Identities=5% Similarity=0.071 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH-------hhhhHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHL---TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK-------VEHNLKDL 191 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhL---sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~-------i~~dv~~v 191 (238)
.=+.++++...++|+...+.|++++..| ..+|+.+.++.++...=.+.+++++...+..+++ .+++=..=
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 4556677777777777777776665543 4566666666665555555556666555555444 22222233
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHh
Q 026425 192 QSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (238)
Q Consensus 192 ~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (238)
.+.+..|+.++..+-+.-=.+..-|-|+..|.
T Consensus 2090 ~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~ 2121 (3245)
T 3vkg_A 2090 EQQSENFNTQMSTVVGDVVLASAFLAYIGFFD 2121 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCC
Confidence 33344444444444444333444444444333
No 78
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=66.50 E-value=20 Score=26.52 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~ 162 (238)
|.+.+..+-..+-.+-....++..+|.|||.+|..++-.
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555555555555666678999999999998887654
No 79
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=65.85 E-value=37 Score=25.03 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
-++|..+++.-++.+|..+-+.++.+-.+..--+=-....++....+.....||.++.
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 4677777777777788888888887776655444445566677777777777777654
No 80
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=64.74 E-value=66 Score=27.40 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=67.1
Q ss_pred HhHhhHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH----HHHhhhhHHHhhhhHHHH
Q 026425 119 VTRKSMATAVSN---LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN----VEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 119 VTkr~ms~Av~s---v~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e----V~~v~~d~~~i~~dv~~v 191 (238)
-++..+.++.++ +-.-||.=-+.....-++|..++.++...+++.+.=-...+.+ ++.++.+++........+
T Consensus 28 ~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l 107 (189)
T 2v71_A 28 EARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQL 107 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555543 3334444445566666778888888888877776666666655 777788888888888888
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 026425 192 QSMIYCLDGKIDSLADKQDITNIGMYLL 219 (238)
Q Consensus 192 ~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (238)
+.-++.||-+=|.+|.+-..+..-+-.+
T Consensus 108 ~~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 108 HKYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 8888888877777777666665544433
No 81
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=64.44 E-value=17 Score=24.72 Aligned_cols=39 Identities=10% Similarity=0.315 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 026425 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~ 163 (238)
.+-.+.|-.=|+|+.+..+..-..+..|||.+..++|+.
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444445566666666677777778888877777764
No 82
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=64.16 E-value=77 Score=28.02 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=7.1
Q ss_pred HHHHHHHHH-hhhc
Q 026425 61 QLNRLKFEC-QRAS 73 (238)
Q Consensus 61 QV~~L~~El-~las 73 (238)
-+++|...+ .++.
T Consensus 7 pl~~l~~~~~~ia~ 20 (341)
T 3zx6_A 7 PIIELSNTVDKIAE 20 (341)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 455566666 5553
No 83
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=63.61 E-value=69 Score=27.28 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=18.9
Q ss_pred cchHHHHHHHHHHHHHH-hhhcC
Q 026425 53 NFTDAIKDQLNRLKFEC-QRASS 74 (238)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~las~ 74 (238)
.+-.+|+.+++.|.+|| .++.+
T Consensus 69 ~dr~ai~~E~~~l~~~i~~iaNt 91 (239)
T 3pwx_A 69 QDRSGMITELKSYRDSIESSFNA 91 (239)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 55778999999999999 88854
No 84
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=62.82 E-value=34 Score=32.80 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK 172 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~ 172 (238)
+|-..+|.+..+++.+..+ .++++++|..
T Consensus 74 ~ld~~~r~~~~~~~~l~~~---rn~~sk~i~~ 102 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEE---KEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3455677777777776654 4455666553
No 85
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=62.24 E-value=20 Score=24.66 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=24.5
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 026425 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (238)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (238)
|..++.=-..||.+++.=..++..|+.++++...+-..++.-+
T Consensus 18 v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl 60 (65)
T 1gl2_D 18 ISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRV 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333355666666666666666666666666555555544
No 86
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=61.47 E-value=39 Score=23.73 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~ 162 (238)
|++....|....++|.+.|+.|+..++.
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~ 37 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTK 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 87
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=61.15 E-value=26 Score=26.05 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHH
Q 026425 55 TDAIKDQLNRLKFEC 69 (238)
Q Consensus 55 ~d~L~aQV~~L~~El 69 (238)
...|..|+..|..++
T Consensus 22 ~~~l~~q~~~l~~~~ 36 (117)
T 2zqm_A 22 LQLVVQQKQKVQLEL 36 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777777777776
No 88
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=60.93 E-value=40 Score=23.59 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=23.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~ 163 (238)
.+|+++...+..+..+|.+.++.|+..++..
T Consensus 12 ~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 12 EELRGVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888887777765
No 89
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=60.65 E-value=50 Score=24.64 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (238)
++.+|..++.+.+..++.+|.+. +.|-.+.- ..+..-+.++...++.|-..+..+=.|+
T Consensus 13 sFN~A~~~i~~g~~tts~AL~ki--------QdVVN~q~-------------~aL~~L~~qL~~NFgAISssi~dIy~RL 71 (77)
T 2bez_C 13 QFNKAISQIQESLTTTSTALGKL--------QDVVNQNA-------------QALNTLVKQLSSNFGAISSVLNDILSRL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46677777777777777777543 33322211 1112223444555555555666666666
Q ss_pred hhhhh
Q 026425 203 DSLAD 207 (238)
Q Consensus 203 ~~ie~ 207 (238)
+.+|+
T Consensus 72 d~leA 76 (77)
T 2bez_C 72 DKVEA 76 (77)
T ss_dssp HHHHH
T ss_pred Hhhhc
Confidence 66664
No 90
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=60.48 E-value=18 Score=27.70 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=45.4
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 026425 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (238)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (238)
|.++...+.+..++-..+..-|.+=.+-+.+|...+++...-|+.=...+..-...|..+..-.+++
T Consensus 23 I~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~ 89 (109)
T 3hd7_B 23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMI 89 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeh
Confidence 6666777777777777777777777777777777777776666666666655555565555555543
No 91
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.35 E-value=64 Score=25.82 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=31.0
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
.+.|+.++..+.+.+.=....+.+..++...++....+++.++.-+..||.++..
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444445555555666666666667777777777776653
No 92
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=60.20 E-value=62 Score=25.63 Aligned_cols=93 Identities=15% Similarity=0.258 Sum_probs=55.7
Q ss_pred eeeccccchhHHHhHhhHHHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH
Q 026425 107 WWKGLSFADLMYVTRKSMATAVSNLNKHLESV-----------TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE 175 (238)
Q Consensus 107 wWKGws~sDlMyVTkr~ms~Av~sv~kqLe~V-----------s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~ 175 (238)
+.-+-|.-|=+|+-|....++++.+-.-..+- ++.+..++++|..-|+.+.+.|++..+...-+..+
T Consensus 19 ~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n-- 96 (130)
T 4dnd_A 19 YFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN-- 96 (130)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred eeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 34456677999999988888888776665552 12577888888888888888888887666654432
Q ss_pred HhhhhHHHhh---hhHHHHHHHHHhhhhhhhhhh
Q 026425 176 EACDDLFKVE---HNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 176 ~v~~d~~~i~---~dv~~v~~~V~~Le~Ki~~ie 206 (238)
=++++ .++..=++.|..++.+|..|+
T Consensus 97 -----p~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 97 -----PGKFKLPAGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp -----HHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22332 224444455555555555554
No 93
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=59.93 E-value=42 Score=29.58 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 026425 163 QNEISKDIRKNVEEACDDLFKVEHNLK 189 (238)
Q Consensus 163 ~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (238)
..+++.+++.+|.+.+.++.-.+.|+.
T Consensus 207 l~~~~~~~~qq~e~f~~~~~p~~e~~~ 233 (273)
T 3s84_A 207 LAELGGHLDQQVEEFRRRVEPYGENFN 233 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 345667888888888888877666653
No 94
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=59.78 E-value=68 Score=25.95 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=53.0
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 026425 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (238)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (238)
.||+.+..+|.+...+.+.......++.+.+.-+..|+..-.......|.|+..++..=.....-+.-|
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777777777777888777888888888888999999888888888888888887655544444433
No 95
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=59.65 E-value=82 Score=26.81 Aligned_cols=100 Identities=10% Similarity=0.089 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh-----------HHHhhhhHHHHH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD-----------LFKVEHNLKDLQ 192 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d-----------~~~i~~dv~~v~ 192 (238)
+...+..+-.-|+.+.++=..-..+|..-|+....+.-+...-....+.++...+.. ++.+..++..++
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444443333332 222344444555
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHh
Q 026425 193 SMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (238)
Q Consensus 193 ~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (238)
.....|-.+|-.+|-..|--.+-....|.-+
T Consensus 102 ~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sl 132 (189)
T 2v71_A 102 AIKEQLHKYVRELEQANDDLERAKRATIMSL 132 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 5555555555555555554444444444433
No 96
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.45 E-value=32 Score=23.71 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=5.4
Q ss_pred HHHHHHhhHHhHH
Q 026425 149 LTQRIQNLNDKVE 161 (238)
Q Consensus 149 LsqRI~~vd~kld 161 (238)
|+..++.|..|+|
T Consensus 9 Lss~V~~L~~kVd 21 (52)
T 1jcd_A 9 ASSDAQTANAKAD 21 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 97
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=58.89 E-value=23 Score=36.86 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=6.0
Q ss_pred hHHHHHHHHH
Q 026425 55 TDAIKDQLNR 64 (238)
Q Consensus 55 ~d~L~aQV~~ 64 (238)
...+..|++-
T Consensus 697 ~~~V~~QLr~ 706 (1184)
T 1i84_S 697 AHLVLEQLRC 706 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4456667765
No 98
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=58.79 E-value=51 Score=24.13 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=39.3
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH
Q 026425 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI 170 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i 170 (238)
...|..=|.++-.+|++-...=...|.+|.+=++-+|-|+++..++-..+
T Consensus 16 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 16 NKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45677778888888888888888888899999999999998776554443
No 99
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=58.45 E-value=74 Score=25.93 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH-------HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK-------NVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~-------eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
.+.++..+..+-..|.....+|...+++...+++.+++ .+.+++..++....-...|..+=..|+..|.
T Consensus 70 ~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 70 AERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555566666666655555544432 3333344444444444444444444444444
No 100
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=58.39 E-value=18 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Q 026425 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEI 166 (238)
Q Consensus 137 ~Vs~sL~~tKkhLsqRI~~vd~kld~~~ei 166 (238)
.+-+.+++-...|..||..+..|||...+.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888999999999999976553
No 101
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=58.14 E-value=47 Score=24.51 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 026425 185 EHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (238)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (238)
+.+++.=..++..++.|+++...+-..+|.-+
T Consensus 50 g~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~ 81 (87)
T 1l4a_D 50 GNEIGSQNRQVDRIQQKAESNESRIDEANKKA 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555544444443
No 102
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=57.28 E-value=87 Score=26.35 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=5.4
Q ss_pred hhhHHHHHHHHHhhh
Q 026425 185 EHNLKDLQSMIYCLD 199 (238)
Q Consensus 185 ~~dv~~v~~~V~~Le 199 (238)
...++.+...+..|.
T Consensus 106 ~~~~~~~~~~~~~l~ 120 (309)
T 2ch7_A 106 SNSAKDVERVVESFQ 120 (309)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 103
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=57.25 E-value=12 Score=22.52 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHH
Q 026425 169 DIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
+.++||.++++.+..+.++++.+
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 56788888887777666666544
No 104
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=56.98 E-value=49 Score=23.40 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=23.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~ 164 (238)
.+|+++...+..+...+.+.+.+|...++...
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~ 42 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLLTQEQAVID 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777776653
No 105
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.96 E-value=40 Score=24.77 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=22.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHH
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNV 174 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV 174 (238)
.++|++ +.++.+.|..--.+|.+ ||+.++..|++-.+..+..+.++
T Consensus 15 ~~~mgt-i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 15 IEGRGS-LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 66666666655544443 45555555555544444444443
No 106
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=56.40 E-value=68 Score=24.84 Aligned_cols=72 Identities=8% Similarity=0.120 Sum_probs=54.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhh--HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNL--NDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~v--d~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
...+..+.+.+.-+..|..+|+.. -+.+|++..-+...++.|++.-.-|-. +|+..-+..+..|..+++...
T Consensus 31 E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp~--YD~R~~q~~i~~L~~~l~e~r 104 (111)
T 2l3l_A 31 ENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLAA--YDLRQGQEALARLQAALAERR 104 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777766 455777777777778888887765554 899999999999999888654
No 107
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=56.04 E-value=61 Score=26.91 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=5.7
Q ss_pred HHHHHHhhhhhhhhhh
Q 026425 191 LQSMIYCLDGKIDSLA 206 (238)
Q Consensus 191 v~~~V~~Le~Ki~~ie 206 (238)
+++-...|--.+..+|
T Consensus 101 l~DEl~aLqlq~n~lE 116 (152)
T 3a7p_A 101 LNAALISGTIENNVLQ 116 (152)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 108
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=56.02 E-value=50 Score=30.66 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (238)
+-..+|.+..+++.+..+ .++++++|.
T Consensus 33 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~ 59 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTE---RNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 445566666666666544 455666665
No 109
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=55.57 E-value=28 Score=26.47 Aligned_cols=20 Identities=45% Similarity=0.777 Sum_probs=18.4
Q ss_pred CCcchHHHHHHHHHHHhhhc
Q 026425 29 GKLPELLRELQSLVERLSKS 48 (238)
Q Consensus 29 G~Lsd~~g~lq~~~k~~~k~ 48 (238)
|||.|++.+||+++|.+-|.
T Consensus 3 gklndlledlqevlknlhkn 22 (102)
T 1p68_A 3 GKLNDLLEDLQEVLKNLHKN 22 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999874
No 110
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=54.76 E-value=70 Score=24.52 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=53.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhH-HhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLN-DKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd-~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (238)
+...+++|++.-+.|+..=..|..+.++|+ +.=++........++-+..++.-.+.....|.-++..++-||.
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 456789999999999999999999999998 3344445555555666666666666666777777777666664
No 111
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=54.70 E-value=56 Score=30.74 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
|-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+...+..+..-+..||.++..++.+
T Consensus 36 l~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHE---RNKIAVEIGKR-RKKGEPVDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777776666554 44556665531 1112333444444444444444445555444443
No 112
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=54.23 E-value=42 Score=26.10 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=15.4
Q ss_pred HHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 026425 175 EEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 175 ~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (238)
.++...+..-..||..++..|..| +|.
T Consensus 66 YDlE~kv~kq~yEI~eL~~rV~dl-gKf 92 (106)
T 1j1d_B 66 FDLQEKFKQQKYEINVLRNRINDN-QKV 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred hhHHHHHHhhhHHHHHHHHHHHHh-cCc
Confidence 334444455567777787777777 654
No 113
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=54.11 E-value=78 Score=24.84 Aligned_cols=29 Identities=10% Similarity=0.233 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (238)
+..|.++++.++.++++..++.+.+...+
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 114
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=54.06 E-value=49 Score=22.50 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhhhHHHh
Q 026425 165 EISKDIRKNVEEACDDLFKV 184 (238)
Q Consensus 165 eis~~i~~eV~~v~~d~~~i 184 (238)
.++.+++.-++.++.-.+.+
T Consensus 66 ~~shel~tpl~~i~~~~e~l 85 (114)
T 3zcc_A 66 GVSHDLRTPLTRIRLATEMM 85 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HhhHHHcChHHHHHHHHHHH
Confidence 34444444444444444333
No 115
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=53.51 E-value=73 Score=27.19 Aligned_cols=101 Identities=9% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh-------------h
Q 026425 122 KSMATAVSNLN--KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE-------------H 186 (238)
Q Consensus 122 r~ms~Av~sv~--kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~-------------~ 186 (238)
|.|.++...++ +.|.+..+.|-.|+.+|.-=++.-...=++.....+.+.....++...+..+. .
T Consensus 26 R~Lh~sl~~l~~d~~l~~a~~~ipdA~~rL~~Vv~~TE~AA~~iLd~vE~~~~~~~~l~~~~~~l~~~w~~l~~~~~~~~ 105 (214)
T 1kmi_Z 26 RMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLA 105 (214)
T ss_dssp HHHHHHHHHHTHHHHHHHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHH
T ss_pred HHHHHHHHHcCCChHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCHH
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026425 187 NLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNF 222 (238)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f 222 (238)
+++.+-.-++.+=..+.+....-+-...-|+.-|.|
T Consensus 106 ~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~AqdF 141 (214)
T 1kmi_Z 106 DARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDF 141 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 116
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=53.11 E-value=1.3e+02 Score=27.16 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH----HHhhhhHHHHHHHHHhh
Q 026425 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL----FKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~----~~i~~dv~~v~~~V~~L 198 (238)
.|..|...|+.|-..+.+..+-++.+.+++..-+..+ ..++.+...++..+.+-
T Consensus 117 d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~ 174 (346)
T 2nrj_A 117 DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQ 174 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcc
Confidence 3455556666555555555444444444444433332 23444444444444333
No 117
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=53.01 E-value=32 Score=33.05 Aligned_cols=63 Identities=17% Similarity=0.082 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
|-..+|.+..+++.+..+. ++++++|..- ..-.+|.+.+..++..+..-+..||.++..++.+
T Consensus 38 ld~~~r~~~~~~~~l~~~r---n~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKL---NSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777766554 4555555431 1122334444444555555555555555555444
No 118
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=52.99 E-value=60 Score=23.24 Aligned_cols=67 Identities=9% Similarity=0.131 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHH------------HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEK------------QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~------------~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (238)
|++....+.....+|.+.++.|+..++. ..+...+-.....++..-|..|..-+.........-|.+
T Consensus 12 l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~d~~ 90 (101)
T 3fav_A 12 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRADEE 90 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555544433 233444444445555555555555555555444444443
No 119
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=52.90 E-value=1.9 Score=32.25 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=10.2
Q ss_pred hheecccccceee
Q 026425 13 LMLAGLGYTGTIL 25 (238)
Q Consensus 13 ~iLvGAG~~GSvl 25 (238)
+++||||++|..+
T Consensus 5 V~IIGaGpaGL~a 17 (336)
T 3kkj_A 5 IAIIGTGIAGLSA 17 (336)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 6789999988654
No 120
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=52.63 E-value=47 Score=26.14 Aligned_cols=9 Identities=44% Similarity=0.575 Sum_probs=5.1
Q ss_pred eeccccchh
Q 026425 108 WKGLSFADL 116 (238)
Q Consensus 108 WKGws~sDl 116 (238)
--|+|+.++
T Consensus 57 ~~G~sL~eI 65 (142)
T 3gp4_A 57 RAGLSIEAL 65 (142)
T ss_dssp HTTCCHHHH
T ss_pred HcCCCHHHH
Confidence 346666655
No 121
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.44 E-value=59 Score=24.10 Aligned_cols=42 Identities=7% Similarity=0.275 Sum_probs=18.2
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
.+|++++...++......-.+..++..++.++.++++.++..
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~ 46 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN 46 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345555544333333333334444444444444444444443
No 122
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=52.06 E-value=44 Score=22.99 Aligned_cols=12 Identities=0% Similarity=0.166 Sum_probs=5.5
Q ss_pred HHHhhHHhHHHH
Q 026425 152 RIQNLNDKVEKQ 163 (238)
Q Consensus 152 RI~~vd~kld~~ 163 (238)
+|+.|..++++.
T Consensus 5 ki~~Lss~V~~L 16 (52)
T 1jcd_A 5 KADQASSDAQTA 16 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 123
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=51.23 E-value=87 Score=24.57 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (238)
|.|...++.+..-+|+.-+.+...++.-..-|..|.+.+++..+.-...+..+ +++++-.+|++
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~i----ReLEq~NDDLE 69 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV----RELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhchHHH
Confidence 34555555556666666666666666555555555555555433333333222 44444444444
No 124
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=50.88 E-value=75 Score=23.73 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=36.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
|+.++-.+.+..--..|+.||..+...+|...+-....+..+.+.....+.-..++.++++.+.-||
T Consensus 33 k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 33 KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444444444556666666666665555555555555555555555556666666555554
No 125
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=50.46 E-value=43 Score=24.46 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHH
Q 026425 55 TDAIKDQLNRLKFEC 69 (238)
Q Consensus 55 ~d~L~aQV~~L~~El 69 (238)
...+..|+..|..|+
T Consensus 17 ~~~l~~q~~~l~~~~ 31 (107)
T 1fxk_A 17 AQAISVQKQTVEMQI 31 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666777777666
No 126
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=50.44 E-value=74 Score=23.51 Aligned_cols=23 Identities=4% Similarity=0.160 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 026425 134 HLESVTEALTVAKKHLTQRIQNL 156 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~v 156 (238)
.|.++.+.+.++|.-+..-||.+
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kv 28 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKV 28 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444
No 127
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=50.28 E-value=59 Score=22.31 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=26.4
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 026425 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (238)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (238)
|..++.=-..||.+++.=..++..|+.++++...+=..++.-+.
T Consensus 19 v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~ 62 (66)
T 1n7s_D 19 IGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33344334556666666666677777777766666666655543
No 128
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=49.59 E-value=1e+02 Score=25.47 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=17.5
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
.++...++.|-..+..+=.+++.+|+.+.
T Consensus 64 ~qL~~nFgAISssi~dIy~rLd~leAdaQ 92 (149)
T 1wyy_A 64 KQLSSNFGAISSVLNDILSRLDKVEAEVQ 92 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666677777776543
No 129
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=49.09 E-value=64 Score=22.39 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 026425 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (238)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (238)
+.+..+..+..-|..|...+.......+.-|.+
T Consensus 57 ~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~d~~ 89 (97)
T 2vs0_A 57 QLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQQ 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555544444444443
No 130
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=48.53 E-value=1.2e+02 Score=29.20 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=30.0
Q ss_pred ccchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 026425 112 SFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKH 148 (238)
Q Consensus 112 s~sDlMyVTkr~ms~Av~sv~kqLe~Vs~sL~~tKkh 148 (238)
-+.|+|.==.++..+-+..|-..|++++.+=+.|+..
T Consensus 81 glad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~ 117 (461)
T 3ghg_B 81 QLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQY 117 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 4789999889999999999999999987776666543
No 131
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=48.09 E-value=93 Score=24.02 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 026425 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (238)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (238)
..-|.+|.-.|+++-.-+|+.+.=-+.=...=..+..|+..++.|++...-.=-.||.++.++..-=+|
T Consensus 33 ~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 33 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555554444311111011123445566667777777776777788888887764444
No 132
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=47.90 E-value=1.2e+02 Score=25.36 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHH-------HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 137 SVTEALTVAKKHLTQRIQNLNDKVEKQ-------NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 137 ~Vs~sL~~tKkhLsqRI~~vd~kld~~-------~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
.....|...|..|.+-+..|...|++= .+++...+..+..++.++++...-...+..-...|-.||..+|.
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666543 34445555566666666666666666666666777777777664
No 133
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=47.80 E-value=21 Score=31.21 Aligned_cols=78 Identities=22% Similarity=0.216 Sum_probs=49.7
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 026425 119 VTRKSMATAVSNLNKHLESVTEA-------LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~s-------L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (238)
+-++|-..|.+.++..|..+.+. +...=.++.+||++|++++|+...=.-.-..|+-.+ +..+.--..++
T Consensus 36 AD~kSTQ~AId~It~KlN~liek~N~qf~~i~~EF~e~e~rI~~l~~~vdD~~~DvwsyNaELLVlleNq~Tld~~Ds~v 115 (222)
T 2wrg_I 36 ADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNV 115 (222)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSCCCCSCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHhccchhhhHHHHH
Confidence 34688899999999999888654 444556788999999999988743222222332222 23333344555
Q ss_pred HHHHHHHH
Q 026425 189 KDLQSMIY 196 (238)
Q Consensus 189 ~~v~~~V~ 196 (238)
.++++.|+
T Consensus 116 ~~L~ekvr 123 (222)
T 2wrg_I 116 RNLYEKVK 123 (222)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555553
No 134
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=47.69 E-value=69 Score=22.37 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=10.5
Q ss_pred HHHHHhhhhhhhhhh
Q 026425 192 QSMIYCLDGKIDSLA 206 (238)
Q Consensus 192 ~~~V~~Le~Ki~~ie 206 (238)
++.+..||.|+.+.+
T Consensus 47 ~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 47 RERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777776554
No 135
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=47.49 E-value=21 Score=27.22 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=22.9
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 026425 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (238)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (238)
..|..||+.|..|+++|..-....++.|.+---+..+..-|++
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDID 45 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 45 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3567788888888777766666555555444444455555554
No 136
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.36 E-value=1.1e+02 Score=36.02 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=9.8
Q ss_pred CCCcchHHHHHHHHHHH
Q 026425 28 DGKLPELLRELQSLVER 44 (238)
Q Consensus 28 ~G~Lsd~~g~lq~~~k~ 44 (238)
+=.+.|+-.+|+.+++.
T Consensus 1682 ~Y~~~~f~eDLk~l~~~ 1698 (3245)
T 3vkg_A 1682 NYKSSDFDDDLRMLLKR 1698 (3245)
T ss_dssp -CCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 33466666666666654
No 137
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1 PDB: 1mql_B* 1mqn_B* 2l4g_A
Probab=47.08 E-value=7.7 Score=33.90 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=49.5
Q ss_pred HhHhhHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 026425 119 VTRKSMATAVSNLNKHLESVTE-------ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~-------sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (238)
+-++|-..|.+.+++.|..+.+ ++...=.+|.+||++|++|+|+...=.-.-..|+-.+ +..+.--..++
T Consensus 36 AD~kSTQ~AId~It~KlN~~iekmN~qfe~v~~ef~~~e~ri~~l~~~vdD~~~DvwsyNaELLVlleNq~Tld~hDsnv 115 (221)
T 1mqm_B 36 ADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLADSEM 115 (221)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSCCCEECSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHhccchhhHHHHHH
Confidence 3568889999999999988843 4555566788999999999998743222222332222 22333344555
Q ss_pred HHHHHHHH
Q 026425 189 KDLQSMIY 196 (238)
Q Consensus 189 ~~v~~~V~ 196 (238)
.++.+.|+
T Consensus 116 ~nL~ekvr 123 (221)
T 1mqm_B 116 NKLFEKTR 123 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 138
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=46.99 E-value=1.9e+02 Score=27.28 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh------------------HHHhhhhHHHHHHHHHhhh
Q 026425 138 VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD------------------LFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 138 Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d------------------~~~i~~dv~~v~~~V~~Le 199 (238)
+.+.|....+.....|+.|...|++....+..+.+-|..++.- .+++-+++..+...+...+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5566777777777777777777877777777777776666642 2335566666666676667
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhh
Q 026425 200 GKIDSLADKQDITNIGMYLLCNFVD 224 (238)
Q Consensus 200 ~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (238)
..|..++..-+.-+.-|..|-+-+.
T Consensus 105 ~~i~~l~~~~~~~~~~i~~L~~~v~ 129 (411)
T 3ghg_C 105 SSIRYLQEIYNSNNQKIVNLKEKVA 129 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777665655666666644443
No 139
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=46.45 E-value=91 Score=23.40 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.8
Q ss_pred hHhhHHHHHH
Q 026425 120 TRKSMATAVS 129 (238)
Q Consensus 120 Tkr~ms~Av~ 129 (238)
++++|..|..
T Consensus 11 ~~leLQSALe 20 (81)
T 1wt6_A 11 TLRELQEALE 20 (81)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445554443
No 140
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=46.30 E-value=92 Score=23.42 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
+++-......--..|+.||+.+...+|...+--...++.+.+.....+.--.++.++++.+.-||
T Consensus 35 ~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 35 AEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333344555555555555555444444444444444444444445555555444443
No 141
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=46.22 E-value=71 Score=23.54 Aligned_cols=12 Identities=17% Similarity=0.327 Sum_probs=4.7
Q ss_pred HHHHHhhHHhHH
Q 026425 150 TQRIQNLNDKVE 161 (238)
Q Consensus 150 sqRI~~vd~kld 161 (238)
..+|+.+..+++
T Consensus 83 e~~i~~le~~~~ 94 (117)
T 2zqm_A 83 EVRLNALERQEK 94 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 142
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=45.63 E-value=65 Score=23.73 Aligned_cols=59 Identities=7% Similarity=0.187 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
..+.-+-++.|...+..++.++..|-+|+..=-.=|.+|..+++.+...+..--.|+..
T Consensus 25 e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 25 EDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666677777777777666666666666666666555555555544
No 143
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=45.62 E-value=96 Score=23.43 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=40.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
.+|.++++++...|-+|..-|+.=..|.++ ..++.++++.+-..-+++ ||.++.+|
T Consensus 33 ~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~-----------L~~mn~Kls~a~rlYD~l------LE~~l~~~ 88 (91)
T 2pjw_V 33 SKLQNLAQRVFASKARLNYALNDKAQKYNT-----------LIEMNGKISEIMNIYDRL------LEQQLQSI 88 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------HHHHHHhc
Confidence 578899999999999998888877777554 455566666666666665 67777655
No 144
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Probab=45.45 E-value=31 Score=29.17 Aligned_cols=47 Identities=13% Similarity=0.344 Sum_probs=37.0
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHHH
Q 026425 119 VTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQNE 165 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL-------~~tKkhLsqRI~~vd~kld~~~e 165 (238)
+-++|-.+|+..++..|..+.+.. ...=.++.+||.+|+.++|+...
T Consensus 36 ad~~sTQ~aid~It~K~N~~iekmn~qf~~i~~ef~e~e~ri~~l~~~vdD~~~ 89 (176)
T 1jsd_B 36 ADSDSTQKAIDKITSKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNKIDDQIQ 89 (176)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999998887543 33345788999999999998753
No 145
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=44.81 E-value=50 Score=30.68 Aligned_cols=64 Identities=20% Similarity=0.416 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
+-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+...+..+..-+..||.++..++.+-
T Consensus 35 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSE---RNKLSKEIGKL-KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHTTGG-GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777776666554 45566666531 01113344444555555555555555555555443
No 146
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=44.74 E-value=51 Score=22.41 Aligned_cols=10 Identities=30% Similarity=0.704 Sum_probs=4.4
Q ss_pred HHHHHHhhHH
Q 026425 149 LTQRIQNLND 158 (238)
Q Consensus 149 LsqRI~~vd~ 158 (238)
+++|++.++.
T Consensus 35 vt~rle~lEn 44 (47)
T 1aq5_A 35 VAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 147
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.49 E-value=55 Score=30.27 Aligned_cols=50 Identities=28% Similarity=0.330 Sum_probs=19.7
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 026425 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (238)
|+++..+..+..+-.+..+.++.++.+.+.+-...-..+|..+..|.++|
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 33333333333333333333333333333333333344455555544443
No 148
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=44.30 E-value=41 Score=22.80 Aligned_cols=38 Identities=13% Similarity=0.425 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHhhHHhH
Q 026425 123 SMATAVSNLNKH----LESVTEALTVAKKHLTQRIQNLNDKV 160 (238)
Q Consensus 123 ~ms~Av~sv~kq----Le~Vs~sL~~tKkhLsqRI~~vd~kl 160 (238)
-|..+|.++=.| .+.+|+.|-.-=...+.|||.|+..+
T Consensus 6 dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 6 DLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 344454444444 44566666666778888888777654
No 149
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB: 2rfu_B* 3bt6_B*
Probab=44.25 E-value=14 Score=31.29 Aligned_cols=47 Identities=30% Similarity=0.429 Sum_probs=36.7
Q ss_pred HhHhhHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHH
Q 026425 119 VTRKSMATAVSNLNKHLESVTE-------ALTVAKKHLTQRIQNLNDKVEKQNE 165 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~-------sL~~tKkhLsqRI~~vd~kld~~~e 165 (238)
+-++|-.+|+..++..|..+.+ ++...=.++.+||.+|++++|+...
T Consensus 36 ad~ksTQ~aId~It~K~N~~iek~n~qfe~i~~ef~~~e~rI~~l~~~vdD~~~ 89 (176)
T 2rft_B 36 ADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRA 89 (176)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCCCCCCCCCSSCCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999888854 2334445889999999999998753
No 150
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=44.00 E-value=74 Score=23.91 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 184 VEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
-..||..=+..|..++.+|..|..
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~ 89 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKL 89 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777766654
No 151
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.75 E-value=64 Score=23.47 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHhhHH
Q 026425 122 KSMATAVSNLNKHLES 137 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~ 137 (238)
+...+|...+.+..+.
T Consensus 61 ~~~~e~~~~L~~~~e~ 76 (107)
T 1fxk_A 61 VAKDELTEELQEKLET 76 (107)
T ss_dssp ECHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3445554444444433
No 152
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=43.67 E-value=25 Score=30.17 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhhHH
Q 026425 144 VAKKHLTQRIQNLND 158 (238)
Q Consensus 144 ~tKkhLsqRI~~vd~ 158 (238)
..|.++.+|++.+..
T Consensus 169 e~r~kl~~~~~el~~ 183 (243)
T 2a01_A 169 ELRQRLAARLEALKE 183 (243)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 153
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.33 E-value=95 Score=22.72 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=35.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
.+...+-.+|+.+..++...++....+ ......++..++.|+...-.|-+.+-.+=..||-.|.
T Consensus 10 ~q~~~Le~~l~e~E~~~~~~l~~~q~~-------i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 10 CQLAAKEAKLRDLEDSLARERDTSRRL-------LAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333444555555555555544444443 3344666777777777766666666555555555443
No 154
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=43.30 E-value=46 Score=30.35 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=4.1
Q ss_pred HHHHHHhhhhh
Q 026425 191 LQSMIYCLDGK 201 (238)
Q Consensus 191 v~~~V~~Le~K 201 (238)
+++.|..|+.+
T Consensus 45 l~~~i~~l~~~ 55 (323)
T 1lwu_C 45 LQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 155
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=43.26 E-value=45 Score=26.71 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=25.5
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (238)
.|..||+.|-.|+++|..-....++.|.+=--+..+..-|++
T Consensus 26 dLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLEVDID 67 (119)
T 1lwu_A 26 ELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDID 67 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 466788887777777766555555555444444455555554
No 156
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=43.25 E-value=1.2e+02 Score=23.86 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
+++...++.+++.|+.=.+--++=-+..++-.+..+.+|.++.+-+..-...+..++..+...
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333334455555666666666666666666666665555443
No 157
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=43.15 E-value=45 Score=25.11 Aligned_cols=29 Identities=7% Similarity=0.311 Sum_probs=24.3
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKH 148 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkh 148 (238)
++.-+.+.|.++.-.|+.+.+|+..+++.
T Consensus 37 ~~~El~~~l~el~e~l~DL~~SI~i~e~~ 65 (95)
T 2c5k_T 37 QEEEIQDILKDVEETIVDLDRSIIVMKRD 65 (95)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 78888999999999999999998885544
No 158
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=42.98 E-value=1.1e+02 Score=23.45 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 026425 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~ 155 (238)
+...+-+-.+.+.+...|..==+.|.++|+.
T Consensus 35 s~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~ 65 (96)
T 1t3j_A 35 ATTFARLCQQVDMTQKHLEEEIARLSKEIDQ 65 (96)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443
No 159
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=42.48 E-value=76 Score=21.36 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=7.2
Q ss_pred HHHHHHHHHH-hhhc
Q 026425 60 DQLNRLKFEC-QRAS 73 (238)
Q Consensus 60 aQV~~L~~El-~las 73 (238)
..+++|.+.+ .++.
T Consensus 9 ~pl~~l~~~~~~i~~ 23 (115)
T 3zrx_A 9 RPIIELSNTFDKIAE 23 (115)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 3455555555 4543
No 160
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=42.09 E-value=57 Score=27.23 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhh
Q 026425 186 HNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie 206 (238)
+.+++.+..+..|+.|+.+++
T Consensus 69 ~n~~sA~~~~d~lekKl~~aq 89 (158)
T 3tul_A 69 KKTDTAKSVYDAATKKLTQAQ 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHH
Confidence 444455555555555555444
No 161
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=41.81 E-value=30 Score=33.61 Aligned_cols=112 Identities=12% Similarity=0.176 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
-+|..|--.|-|..+.+.+-+...+..+.. +|...++-|+..-... .-++|..-+.|++.+..++...+..+..+
T Consensus 43 G~lNra~v~VQ~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~~L~~~GD~~--vi~qI~~n~~dI~~Lk~~~~~~~~~l~~~ 120 (487)
T 2bsg_A 43 GSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIE--ALAQIGINKKDISDLKTLTSEHTEILNGT 120 (487)
T ss_pred cccccchhhhhhhHHHHhhhHHHHHhhHHHHHHHHHHHHHHHhccccHH--HHHHHHhhHHHHHHHhcchhhhhhhhhhh
Confidence 356677777888888888888888877776 4444444444322221 23445555555555555555555555555
Q ss_pred hhhhhhhhhhh-------HHHHHHHHHHHHHhhccccccccccc
Q 026425 199 DGKIDSLADKQ-------DITNIGMYLLCNFVDGKKGRTTERTI 235 (238)
Q Consensus 199 e~Ki~~ie~kQ-------d~tn~GV~~Lc~f~~~~~~~~p~~~~ 235 (238)
..++++|+..- |...+=|+.=..|+...-+.-|+..|
T Consensus 121 ~~~~~ei~~diG~~~~~~d~~~rTV~~DI~~IK~elG~Y~g~DI 164 (487)
T 2bsg_A 121 NNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDI 164 (487)
T ss_pred ccchHHHHhhcCccCcccCCCccccchhHHHHHHHhccCCCCCC
Confidence 55555555432 22223344444555555555554443
No 162
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=41.75 E-value=66 Score=22.48 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=32.1
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh----hHHHHHHHHHHHHHh
Q 026425 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK----QDITNIGMYLLCNFV 223 (238)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k----Qd~tn~GV~~Lc~f~ 223 (238)
+++..+..++..+..=+..+..+|..=+.-|++||++ ++.+..|...|-.+.
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 61 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAA 61 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666677777777777777766 444455666665443
No 163
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=41.57 E-value=16 Score=21.56 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.3
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALT 143 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~ 143 (238)
|+|-+++++..|+..+.+|-++|.
T Consensus 2 ~q~el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999998888877764
No 164
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=41.49 E-value=1.1e+02 Score=22.99 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=37.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 127 Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
-.+++-++...+-.+|+.++.++...++.....+. ....++..++.|+..--.|-+.+-.+=..||-.|.
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~-------~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRMLT-------DKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666666665555555444443 34556666666666666666666555555655443
No 165
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=41.02 E-value=1.3e+02 Score=26.56 Aligned_cols=55 Identities=11% Similarity=0.262 Sum_probs=42.6
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
+++=+.++-...+-.....-.++....|+....-+|..++..|.+.|.+|+.|+.
T Consensus 93 l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 93 VDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 3333444555555556667778999999999999999999999999999999874
No 166
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=41.01 E-value=82 Score=21.66 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 026425 158 DKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (238)
Q Consensus 158 ~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (238)
.++...++-.+.|-+-|.++...++.+.-=++.+|.-+.
T Consensus 4 ~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN 42 (51)
T 3kpe_A 4 GEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556667787888777877777777776654
No 167
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=40.74 E-value=70 Score=29.75 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (238)
.|+..-++|.+|++.++.+..++.+..+..++++ -+-...-..+|..+..|.+.|
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l-------~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL-------FQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCE
Confidence 3444444555555555555555544444444333 333344456677777666655
No 168
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=40.62 E-value=93 Score=21.86 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Q 026425 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN 173 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e 173 (238)
++=+++|.-+|+.|.+.....|.. |..||.++-+.++++..+-+-
T Consensus 8 ~eRve~m~~~l~Evnekv~~ik~s----L~~LD~~lg~Lqdlsal~v~t 52 (56)
T 3e7k_A 8 FERVEQMSIQIKEVGDRVNYIKRS----LQSLDSQIGHLQDLSALTVDT 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHH
Confidence 445788888999999988888885 457888888888888776543
No 169
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.13 E-value=1e+02 Score=29.51 Aligned_cols=20 Identities=0% Similarity=-0.125 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhHHhHH
Q 026425 142 LTVAKKHLTQRIQNLNDKVE 161 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld 161 (238)
|-..+|.+..+++.+..+.+
T Consensus 42 ld~~~r~~~~~~~~l~~~rN 61 (484)
T 3lss_A 42 ADKKWRRTQFLTEASKKLIN 61 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566777777776665544
No 170
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=40.11 E-value=2.2e+02 Score=27.91 Aligned_cols=92 Identities=15% Similarity=0.107 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH---HHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q 026425 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL---QSMIYCLDGKIDSLADKQDITNIGMYLLC 220 (238)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v---~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 220 (238)
..|-+|..+|.+...+=|. ..+.+..+..+.++..+++.+...-..+ ...-.|||--..|+.+--.+.-.-.+.|-
T Consensus 500 ~~k~~l~~~l~~~y~~~d~-~~l~~l~~~~~~~l~~~~~~l~~~~~~~Wl~~~kp~Gle~~~~R~~g~~~R~~~~~~r~~ 578 (627)
T 2epl_X 500 ALKISITSGIQKAYRNGDK-EHLSALAEKDFPQLYQMVEDFSDQFSRQWQQENKIFGLDTIDIRFGGLLKRIKRAQERLE 578 (627)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHBCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777666544222 2233333444555566666555444332 11112333333333333333333345677
Q ss_pred HHhhcccccccccccc
Q 026425 221 NFVDGKKGRTTERTIK 236 (238)
Q Consensus 221 ~f~~~~~~~~p~~~~~ 236 (238)
+|+.|+..+++|+.+.
T Consensus 579 ~~~~g~~~~~~el~~~ 594 (627)
T 2epl_X 579 QFISGQIDCVEELEQE 594 (627)
T ss_dssp HHHHTSSSCCGGGGSC
T ss_pred HHHcCCcCChhhcCCC
Confidence 8999999999987764
No 171
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=39.88 E-value=78 Score=25.53 Aligned_cols=12 Identities=0% Similarity=-0.028 Sum_probs=5.1
Q ss_pred hhhhHHHHHHHH
Q 026425 184 VEHNLKDLQSMI 195 (238)
Q Consensus 184 i~~dv~~v~~~V 195 (238)
+..|+.++++++
T Consensus 65 L~~q~Tslr~~~ 76 (125)
T 4g2k_A 65 LLRVTTEERTFS 76 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 172
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=39.86 E-value=22 Score=30.08 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=50.7
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALT-------VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~-------~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (238)
+.++|-..|...++..|..|.+... ..=.++.+||.+|++|+|++..-.=.-.-|+-.+ +..+.--.+.|
T Consensus 36 AD~kSTQ~AId~It~KvN~iiekmn~qf~~v~~ef~~~e~ri~~l~~kvdD~~~DvwsYnAELLVllENq~TlD~hDsnv 115 (174)
T 3ku3_B 36 ADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNV 115 (174)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHTSSCCCCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHhcccccchhhHHH
Confidence 5789999999999999988876543 2234678999999999998754433333343322 23334444555
Q ss_pred HHHHHHHH
Q 026425 189 KDLQSMIY 196 (238)
Q Consensus 189 ~~v~~~V~ 196 (238)
.++.+.|+
T Consensus 116 ~nLyekvr 123 (174)
T 3ku3_B 116 KNLYDKVR 123 (174)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 173
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=39.15 E-value=97 Score=21.65 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=26.9
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
.+..+..-.+++.....++..++..+..|+..|+++.
T Consensus 40 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 40 LSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555666777888889999999999888763
No 174
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=38.89 E-value=1.1e+02 Score=26.81 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 026425 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (238)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (238)
..|++|..|+..+-.++.....--+.|++|....+
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~ 198 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMV 198 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333334444433333
No 175
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=38.74 E-value=63 Score=24.06 Aligned_cols=21 Identities=5% Similarity=0.235 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 026425 124 MATAVSNLNKHLESVTEALTV 144 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~ 144 (238)
|+++..+++.-|.++.+.+..
T Consensus 21 i~~g~~tts~AL~kiQdVVN~ 41 (77)
T 2bez_C 21 IQESLTTTSTALGKLQDVVNQ 41 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455545444444443
No 176
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.71 E-value=2.4e+02 Score=26.89 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 026425 147 KHLTQRI 153 (238)
Q Consensus 147 khLsqRI 153 (238)
..+++.|
T Consensus 94 n~~sk~i 100 (501)
T 1wle_A 94 EAVTEAV 100 (501)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 177
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=38.41 E-value=1.8e+02 Score=24.48 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHH-hhhc
Q 026425 55 TDAIKDQLNRLKFEC-QRAS 73 (238)
Q Consensus 55 ~d~L~aQV~~L~~El-~las 73 (238)
+..+..-|+..+.+- .||-
T Consensus 68 I~~i~~~I~~IA~QTNLLAL 87 (227)
T 1qu7_A 68 IADIISVIDGIAFQTNILAL 87 (227)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555 4443
No 178
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST cell membrane, HOST membrane, membrane, transmembrane, viral protein; HET: NAG; 2.60A {Influenza a virus} PDB: 3m5h_B* 3m5i_B* 3m5j_B* 4dj6_B* 4dj7_B* 4dj8_B* 4fqv_B 1ti8_B*
Probab=38.31 E-value=12 Score=31.96 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=51.1
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh---hhHHHhhhh
Q 026425 118 YVTRKSMATAVSNLNKHLESVTE-------ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC---DDLFKVEHN 187 (238)
Q Consensus 118 yVTkr~ms~Av~sv~kqLe~Vs~-------sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~---~d~~~i~~d 187 (238)
=+.++|-..|...++..|-.|.+ ++...=.++.+||.+|++|+|++..=.=.-.-|+-.+- ..+..-...
T Consensus 35 AAD~kSTQ~AId~IT~KvN~iIeKmN~qf~~i~~Ef~eve~ri~~l~~kvdD~~~DiWsYnaELLVlLENq~TlD~hDsn 114 (182)
T 3m5g_B 35 AADYKSTQSAIDQITGKLNRLIGKTNQQFELIDNEFNEIEQQIGNVINWTRDAMTEIWSYNAELLVAMENQHTIDLADSE 114 (182)
T ss_dssp EECHHHHHHHHHHHHHHHHHHSSCCCEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHhcccccchhhHH
Confidence 35899999999999999888764 33344457789999999999987544444444433332 333334455
Q ss_pred HHHHHHHH
Q 026425 188 LKDLQSMI 195 (238)
Q Consensus 188 v~~v~~~V 195 (238)
|.++.+.|
T Consensus 115 v~nLyekv 122 (182)
T 3m5g_B 115 MSKLYERV 122 (182)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 179
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=38.27 E-value=1.8e+02 Score=24.42 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (238)
...+.+|++.|..+-+.....+..-+..+.+.. ++.+|..+++.+..=+...+..|.+
T Consensus 187 ~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~-~~~~F~~~~~~l~~Wl~~~~~~l~~ 244 (323)
T 3edv_A 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMEDVIRQIEA 244 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666666666666666666665555554 3455555655555555555544443
No 180
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=38.21 E-value=1.4e+02 Score=23.10 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 026425 124 MATAVSNLNKHLES---VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 124 ms~Av~sv~kqLe~---Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (238)
|+|-.+++-..|+. -.+.|...|++|..-+..+...=. +-.+.+.+++..+...=..++.=+-.-..||.
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~-------~R~~~i~el~akidd~Lk~l~~EklAkldLE~ 74 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGA-------EREKRLRELEAKLDETLKNLELEKLARMELEA 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44555555554443 234445555554443333222211 11223444444443333333333334445666
Q ss_pred hhhhhh
Q 026425 201 KIDSLA 206 (238)
Q Consensus 201 Ki~~ie 206 (238)
++...|
T Consensus 75 RLsKtE 80 (101)
T 1d7m_A 75 RLAKTE 80 (101)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 665444
No 181
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=38.13 E-value=79 Score=22.49 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=32.0
Q ss_pred HHHHHhhHHhHHHHHHHHHHHH--------HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 150 TQRIQNLNDKVEKQNEISKDIR--------KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~--------~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
..++..++=.|++.+++...-. +-..-++.....+...+..++.+...|+.+++..+..
T Consensus 9 I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~ 75 (99)
T 1q08_A 9 IRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGT 75 (99)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344445555555555543221 1123344455566666666777777777777766653
No 182
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=37.79 E-value=19 Score=29.83 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=12.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNL 156 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~v 156 (238)
.+.+.+||.+--.+|++.-..+-+|+|.+
T Consensus 59 L~~l~~qL~~nFgAISssi~dIy~rLd~l 87 (149)
T 1wyy_A 59 LNTLVKQLSSNFGAISSVLNDILSRLDKV 87 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444554444
No 183
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=37.73 E-value=75 Score=25.71 Aligned_cols=23 Identities=9% Similarity=0.032 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhh
Q 026425 165 EISKDIRKNVEEACDDLFKVEHN 187 (238)
Q Consensus 165 eis~~i~~eV~~v~~d~~~i~~d 187 (238)
++++.+.+++..+..++.+|-.|
T Consensus 9 ~ei~e~~~~i~~l~~~Ik~il~~ 31 (129)
T 3f6n_A 9 KEVSEILSDQKSMKADIKAILEL 31 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333
No 184
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=37.42 E-value=1.1e+02 Score=26.90 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~ 163 (238)
|..+|+.+...+..+......+-++|..+|++ .+|...
T Consensus 132 L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~--~~L~~L 169 (261)
T 3rkg_A 132 FINVMSALETDFKLHSQICIQILNDLENEVNR--LKLRHL 169 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHH
Confidence 45677777777777777777788888766654 444443
No 185
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.40 E-value=96 Score=21.14 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=15.4
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF 182 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~ 182 (238)
+|..+++.|..+=....+.-+.-++++..+++.++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 186
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.31 E-value=1.2e+02 Score=24.93 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 026425 56 DAIKDQLNRLKFEC 69 (238)
Q Consensus 56 d~L~aQV~~L~~El 69 (238)
..|-..+.++|+||
T Consensus 16 s~LeD~L~~~R~el 29 (154)
T 2ocy_A 16 SHLEEQLNKSLKTI 29 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 44455555555555
No 187
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=37.31 E-value=1.1e+02 Score=27.32 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHH-HHHHHHHHHHHHHhhhhHHHhhhh
Q 026425 137 SVTEALTVAKKHLTQRIQNLNDKVEKQ-NEISKDIRKNVEEACDDLFKVEHN 187 (238)
Q Consensus 137 ~Vs~sL~~tKkhLsqRI~~vd~kld~~-~eis~~i~~eV~~v~~d~~~i~~d 187 (238)
+++...+..+..|...++.+-.+|.-- .|+...+++++.+++..+.-+..+
T Consensus 100 ~l~~~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~E 151 (307)
T 2l7b_A 100 RLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRK 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555544422 223333333444444444433333
No 188
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=37.29 E-value=1.2e+02 Score=22.24 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
..-|.+|..-|+|+-.-+++.+.=-+.=...=+.+..|+..++.|++...-.=..||.|++++..--+
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444322222112223455566677778888888888899999998865443
No 189
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=37.21 E-value=1e+02 Score=21.46 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 026425 186 HNLKDLQSMIYCLDGKIDSLADKQDIT 212 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (238)
.++++=+..+..++.|.+++..+=..+
T Consensus 31 ~Eid~QN~~ldrI~~k~d~~d~ri~~~ 57 (64)
T 3b5n_D 31 KELDSQQKRLNNIEESTDDLDINLHMN 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 190
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=37.15 E-value=1.8e+02 Score=26.16 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=48.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (238)
++.+.+.|+.+...+..-+.+..+=++.|.+=-+++.+=....+..+..+..-+..-+.|+..++.-++.+...|+
T Consensus 118 ~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 118 GETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444444444444444445556677777777777778888888888888888877
No 191
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=37.09 E-value=58 Score=23.18 Aligned_cols=36 Identities=8% Similarity=0.097 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 026425 166 ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (238)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (238)
...+-.....+++.-|..|+.-++.-+.....-|.+
T Consensus 54 ~~~~W~~~~~~l~~~L~~i~~~l~~a~~~y~~~d~~ 89 (96)
T 3h6p_C 54 WQTQWNQALEDLVRAYQSMSGTHESNTMAMLARDGA 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455544444444444444443
No 192
>4ack_A TSSL; protein transport, microbial surface structures, virul factor; 2.15A {Francisella novicida} PDB: 4acl_A
Probab=36.84 E-value=63 Score=27.62 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Q 026425 160 VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (238)
Q Consensus 160 ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (238)
++=.-+|.+.|++-+.+-.-|-++|-.-=.+|++.|..+-..+.. ...+...-.-++.+|+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ir~~I~~~re~L~~-gysE~~~~~ilFAlcAlID 70 (185)
T 4ack_A 7 IEIILDIIKTTREIIEDNDNDNEKISYHRNNIRKSIFFLQEELLE-KYSETVCKYIVFPLLAYVD 70 (185)
T ss_dssp HHHHHHHHHHHHHHTC---CCTTHHHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 344567888888888888888888888888888888888777777 7777777888899999986
No 193
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=36.31 E-value=1.4e+02 Score=23.73 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=46.9
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH-----HH--H----HH------HHHhhhhHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISK-----DI--R----KN------VEEACDDLF 182 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~-----~i--~----~e------V~~v~~d~~ 182 (238)
.++.+..-+..+.++|+...+++..--..+.++|...|+++|+...-.. .+ + .+ +..+-.|++
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~I~~~~~~lla~~~p~a~dlr~i~~~l~i~~dlE 91 (216)
T 2i0m_A 12 LEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARLLALQQPQVSDLRFVISIMSSCSDLE 91 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 4556666666667777777777765555666777776766665433211 11 0 11 333446777
Q ss_pred HhhhhHHHHHHHHHhhh
Q 026425 183 KVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 183 ~i~~dv~~v~~~V~~Le 199 (238)
+||+-..+|-..+..+.
T Consensus 92 RIgD~a~~Ia~~~~~~~ 108 (216)
T 2i0m_A 92 RMGDHMAGIAKAVLQLK 108 (216)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777777766665544
No 194
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=36.19 E-value=1.7e+02 Score=23.49 Aligned_cols=71 Identities=6% Similarity=0.140 Sum_probs=52.7
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 121 RKSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe~Vs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
=..+.+.+.+.--+|+.++..|+....++. .|++.+..+|+....+.+--...+.++-.-..++...+..+
T Consensus 89 l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~l 162 (175)
T 4abx_A 89 VMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGL 162 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 356888888999999999999988877774 78999999999888887766544555544445555555544
No 195
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.98 E-value=1.6e+02 Score=23.10 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=47.7
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHH----HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Q 026425 147 KHLTQRIQNLNDKVEKQNEISKDIRK----NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYL 218 (238)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~----eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 218 (238)
+.|..+..+|.-..|+.+.=-.+-+. .++.++.++++....-+.++.-++.||-+=|.+|-....|..-+-.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 34444555544444444433333333 3677788888888888888889999999988888877777665543
No 196
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=35.95 E-value=1e+02 Score=21.18 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=27.3
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHH
Q 026425 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (238)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (238)
+++..+..++..+..=+..+..+|..=+.-|++||+|-+-|..
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 51 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEV 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666677777777778888876555443
No 197
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=35.68 E-value=2.1e+02 Score=27.76 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=53.0
Q ss_pred cchhHHHhHh--hHHHHHHHHHHhhHHHHHHHHHHHH-----------------------------HHHHHHHhhHHhHH
Q 026425 113 FADLMYVTRK--SMATAVSNLNKHLESVTEALTVAKK-----------------------------HLTQRIQNLNDKVE 161 (238)
Q Consensus 113 ~sDlMyVTkr--~ms~Av~sv~kqLe~Vs~sL~~tKk-----------------------------hLsqRI~~vd~kld 161 (238)
-.|-+|+.-| ++.++...+.+.+++..+..+..++ +++++-..++..+.
T Consensus 328 ~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ 407 (671)
T 1mqs_A 328 PNDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMN 407 (671)
T ss_dssp SSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3799999888 7889999999999988887654332 56677777888888
Q ss_pred HHHHHHHHHHH----HHHHhhhhH
Q 026425 162 KQNEISKDIRK----NVEEACDDL 181 (238)
Q Consensus 162 ~~~eis~~i~~----eV~~v~~d~ 181 (238)
=..+|.+.+++ ++.++..++
T Consensus 408 ia~~l~~~i~~~~l~~~~e~EQ~l 431 (671)
T 1mqs_A 408 IFAALLSQLESKSLDTFFEVEQDP 431 (671)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTSCC
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHH
Confidence 88888888873 567777666
No 198
>4f23_A Hemagglutinin, H16; sialic acid, glycolysation, membrane, viral P; HET: NAG; 1.70A {Influenza a virus} PDB: 4fiu_A*
Probab=35.64 E-value=36 Score=33.21 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=50.9
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH---HhhhhHHHhhhhH
Q 026425 119 VTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE---EACDDLFKVEHNL 188 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL-------~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~---~v~~d~~~i~~dv 188 (238)
|-++|=..|.+.++..|..+.|.. ...=.+|..||++|++|+|+...=.=.-..|+- |=+..+..-..+|
T Consensus 370 AD~kSTQ~AId~It~k~N~iiekmn~qf~~i~~ef~~~e~ri~~l~~~~~D~~~dvwsynaELlVlleN~~tld~~Dsnv 449 (515)
T 4f23_A 370 ADKTSTQKAINEITTKINNIIEKMNGNYDSIRGEFNQVEKRINMIADRVDDAVTDIWSYNAKLLVLIENDRTLDLHDANV 449 (515)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTCCSCCSCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcHHHHhhhccCcccchhhHHH
Confidence 568999999999999998887643 333346889999999999987322222222222 2223444445666
Q ss_pred HHHHHHHH
Q 026425 189 KDLQSMIY 196 (238)
Q Consensus 189 ~~v~~~V~ 196 (238)
.++.+.|+
T Consensus 450 ~~L~ekvr 457 (515)
T 4f23_A 450 RNLHEQIK 457 (515)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 199
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=35.48 E-value=1.5e+02 Score=22.89 Aligned_cols=33 Identities=18% Similarity=0.485 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Q 026425 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK 172 (238)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~ 172 (238)
+.|.+.|..|..+|..+..++++..+.......
T Consensus 72 ~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~ 104 (129)
T 2fxo_A 72 DQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554444433333
No 200
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.19 E-value=62 Score=23.74 Aligned_cols=45 Identities=9% Similarity=0.262 Sum_probs=23.7
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (238)
|..=++.-+..|.+..++.+....++.+-...+.++.+.++.++.
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333334445555555555566665555555566666655544
No 201
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=35.15 E-value=94 Score=24.41 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=11.3
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 183 KVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
.+...+..++.....|+.+|+..+.
T Consensus 106 ~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 106 NVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555554443
No 202
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=35.04 E-value=1.9e+02 Score=24.50 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhH
Q 026425 166 ISKDIRKNVEEACDDLFKVEHNL 188 (238)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv 188 (238)
+...+.+++.++|..++-+..++
T Consensus 104 l~~~~~~~~eelr~~L~P~~eel 126 (243)
T 2a01_A 104 FQKKWQEEMELYRQKVEPLRAEL 126 (243)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 44444555555555554444444
No 203
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=34.65 E-value=1.1e+02 Score=21.06 Aligned_cols=29 Identities=7% Similarity=0.206 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 026425 134 HLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 134 qLe~Vs~sL~~tKkhLsqRI~~vd~kld~ 162 (238)
+|+++...+.....+|.+.++.|...++.
T Consensus 10 ~l~~~A~~~~~~~~~l~~~l~~L~~~~~~ 38 (97)
T 2vs0_A 10 EIRAKSQSYGQGSDQIRQILSDLTRAQGE 38 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444
No 204
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=34.63 E-value=76 Score=21.52 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=18.6
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
+..++.|--++..|-+++..++..|...|.++|.
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3344444444555556666666666666666553
No 205
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=34.15 E-value=1.9e+02 Score=23.66 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
|.-+.=.+.-...=..|..-||++.++|+..++--+.|++++...-.++..+..++..+..-|..|
T Consensus 87 KEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 87 KEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
No 206
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=33.82 E-value=2.8e+02 Score=25.44 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=28.4
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~k 159 (238)
+.|..+-..-..++.++.++++.|...+..+.++|+.--++
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~ 104 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQ 104 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777777777666544333
No 207
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=33.81 E-value=93 Score=25.91 Aligned_cols=66 Identities=12% Similarity=0.241 Sum_probs=42.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 132 NKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 132 ~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
-.=|+.+.+.....-+++..+|+.+++++-+.. ......++..++.++-.++.=+...+.++..|.
T Consensus 174 ~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~--~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 239 (269)
T 2bbh_A 174 YSLIDALVDDYFVLLEKIDDEIDVLEEEVLERP--EKETVQRTHQLKRNLVELRKTIWPLREVLSSLY 239 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888764321 223345566677666666666666666666664
No 208
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A* 2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A* 3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Probab=33.65 E-value=41 Score=32.80 Aligned_cols=78 Identities=22% Similarity=0.229 Sum_probs=52.1
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH---HHhhhhHHHhhhhH
Q 026425 119 VTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV---EEACDDLFKVEHNL 188 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL-------~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV---~~v~~d~~~i~~dv 188 (238)
|-++|=+.|...++..|..+-|.. ..-=.+|.+||++|.+++|+...=.=.-..|+ -|=+..+.--..+|
T Consensus 376 AD~kSTQ~AId~It~K~N~iiek~n~qf~~i~~ef~~~e~ri~~l~~~v~D~~~dvwsynaeLLV~leN~~Tld~~Dsnv 455 (509)
T 2wr1_A 376 ADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNV 455 (509)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhccHHHHhhhccchhhhhhhhHH
Confidence 457899999999999988886532 22235788999999999998743222222332 22334555566777
Q ss_pred HHHHHHHH
Q 026425 189 KDLQSMIY 196 (238)
Q Consensus 189 ~~v~~~V~ 196 (238)
+++++.|+
T Consensus 456 ~~l~ekvr 463 (509)
T 2wr1_A 456 KNLYDKVR 463 (509)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777765
No 209
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.56 E-value=36 Score=26.37 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=33.0
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
+.++++.++..++....+-+.+++-+..||.+|.+..
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~ 46 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA 46 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999998744
No 210
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=33.36 E-value=1e+02 Score=27.78 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=29.4
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 026425 181 LFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (238)
Q Consensus 181 ~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (238)
+.....|++.+...|.+|+..|.++..=.---.+|+.+|
T Consensus 381 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 419 (463)
T 2xz3_A 381 IHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWL 419 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Confidence 456778888899999999999998776544445666655
No 211
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.16 E-value=1.9e+02 Score=24.13 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=12.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhc
Q 026425 205 LADKQDITNIGMYLLCNFVDG 225 (238)
Q Consensus 205 ie~kQd~tn~GV~~Lc~f~~~ 225 (238)
+-+.......-||+|.+.+..
T Consensus 120 l~Aed~AieDaIy~L~~al~~ 140 (174)
T 2p22_A 120 LVAQDYALTDTIECLSRMLHR 140 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 334444455678888877653
No 212
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=32.85 E-value=2e+02 Score=23.42 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=48.3
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH-----HHH------HH------HHHhhhhHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISK-----DIR------KN------VEEACDDLF 182 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~-----~i~------~e------V~~v~~d~~ 182 (238)
.++.+..-+..+.++|+...++|..--..+.++|...|+.+|....-.. .+. .+ +..+-.|++
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlE 91 (235)
T 1sum_B 12 FKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIE 91 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 3555666666667777777777766556677777777777665533221 110 11 134446778
Q ss_pred HhhhhHHHHHHHHHhhhh
Q 026425 183 KVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~ 200 (238)
+||+-..+|-..+..+..
T Consensus 92 RIgD~a~~Ia~~~~~~~~ 109 (235)
T 1sum_B 92 NIADKCHDIAKNVLELME 109 (235)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 888777777666655544
No 213
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.70 E-value=1.4e+02 Score=28.07 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 026425 140 EALTVAKKHLTQRIQ 154 (238)
Q Consensus 140 ~sL~~tKkhLsqRI~ 154 (238)
+.|++-+..++..|.
T Consensus 48 ~~l~~~~n~~sk~i~ 62 (455)
T 2dq0_A 48 NRLRHERNKIAVEIG 62 (455)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 214
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=32.46 E-value=2.1e+02 Score=23.61 Aligned_cols=25 Identities=12% Similarity=0.381 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhH
Q 026425 164 NEISKDIRKNVEEACDDLFKVEHNL 188 (238)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~i~~dv 188 (238)
.++...++.++.+++..++-+..++
T Consensus 98 e~lr~~l~kdlEelr~kL~P~~eEL 122 (191)
T 1nfn_A 98 QAAQARLGADMEDVCGRLVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455666666666666554443
No 215
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.34 E-value=1.7e+02 Score=22.47 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (238)
++...-++|..+...++.++....+--..-+..=..+....++|..+++.+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555555555544333333333334444445555555544
No 216
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.13 E-value=4.6e+02 Score=27.36 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh-----------hhHHHhhhhHHHH
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC-----------DDLFKVEHNLKDL 191 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~-----------~d~~~i~~dv~~v 191 (238)
.+.+-|+.+-+.++.+-.. ..-++.+..++..++.++++..+-.+...+|..+++ +.++++..+...+
T Consensus 957 ~~~~e~~~L~~~l~~le~~-~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L 1035 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMS-EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555443 223334445555555555444444333333333333 3333444444444
Q ss_pred HHHHHhhhhhhh
Q 026425 192 QSMIYCLDGKID 203 (238)
Q Consensus 192 ~~~V~~Le~Ki~ 203 (238)
++-+..||..+.
T Consensus 1036 ~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1036 KTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 217
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.12 E-value=2.2e+02 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 026425 187 NLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (238)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (238)
|.+.+..-+..|..+|..+|....-...-+.
T Consensus 72 ~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 72 DAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333
No 218
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=31.75 E-value=2.6e+02 Score=24.47 Aligned_cols=84 Identities=13% Similarity=0.215 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH------HHHHhh
Q 026425 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ------SMIYCL 198 (238)
Q Consensus 125 s~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~------~~V~~L 198 (238)
.+++..|+-.|-.+...+.++-.++.++++..-..|-.. ..+.+.|...|+.=..+.++|..+. ..+..|
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~L 136 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSI----RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVL 136 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 467777777777777777777777777766555444332 2222345555555555555555555 345566
Q ss_pred hhhhhhhhhhhHHH
Q 026425 199 DGKIDSLADKQDIT 212 (238)
Q Consensus 199 e~Ki~~ie~kQd~t 212 (238)
|..|.+.|.....+
T Consensus 137 eqELvraEae~lva 150 (234)
T 3plt_A 137 EQELVRAEAESLVA 150 (234)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHH
Confidence 66666555444333
No 219
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=31.74 E-value=1.3e+02 Score=21.09 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=33.1
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh----hHHHHHHHHHHHHHhh
Q 026425 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK----QDITNIGMYLLCNFVD 224 (238)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k----Qd~tn~GV~~Lc~f~~ 224 (238)
+++..+..++..++.=+..+..+|..=+.-|++||+| ++.+..|...|-.+..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666666676667777887766 4455566666766553
No 220
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.62 E-value=1.5e+02 Score=21.70 Aligned_cols=13 Identities=31% Similarity=0.256 Sum_probs=6.1
Q ss_pred HhhHHHHHHHHHH
Q 026425 133 KHLESVTEALTVA 145 (238)
Q Consensus 133 kqLe~Vs~sL~~t 145 (238)
|.|+.+.+.+...
T Consensus 3 ~~~~~~~~~~~~~ 15 (112)
T 1l8d_A 3 KLLEELETKKTTI 15 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 4455555544333
No 221
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.53 E-value=1.6e+02 Score=22.00 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 166 ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
.-+.|++|++.++.+.-.+.++++.-...-..|+..|..++
T Consensus 25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~ 65 (81)
T 1wt6_A 25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQ 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777776666655555555554444433
No 222
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=31.29 E-value=2.1e+02 Score=28.11 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh-------hHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACD-------DLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~-------d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (238)
|.||++.-..++.....-..+.+..|..+.. .+.....+=..++..+..++.|+.+-..|++-- .-|..-+.
T Consensus 354 lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~-~aIKDAVk 432 (602)
T 1cii_A 354 LRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDEL-KATKDAIN 432 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHH-HHHHHHHH
Confidence 4466554444444433333333333333332 333333333445666677777777777777733 33666666
Q ss_pred Hhhcccccc
Q 026425 222 FVDGKKGRT 230 (238)
Q Consensus 222 f~~~~~~~~ 230 (238)
|+.+...++
T Consensus 433 fTAdFykkI 441 (602)
T 1cii_A 433 FTTEFLKSV 441 (602)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666554443
No 223
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=31.20 E-value=7.2 Score=32.89 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.4
Q ss_pred hheecccccceee
Q 026425 13 LMLAGLGYTGTIL 25 (238)
Q Consensus 13 ~iLvGAG~~GSvl 25 (238)
+++||||++|+.+
T Consensus 7 ViIVGaGpaGl~~ 19 (397)
T 3oz2_A 7 VLVVGGGPGGSTA 19 (397)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 5789999998744
No 224
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=30.92 E-value=45 Score=26.54 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=32.8
Q ss_pred HHHHHHHH-hhhcCCCeEEEeCCCCCcceeehhhhhHhhhhh-----eeeeeeeccccch
Q 026425 62 LNRLKFEC-QRASSGQIFVRNENSGGNATSLMIPAATLGALG-----YGYMWWKGLSFAD 115 (238)
Q Consensus 62 V~~L~~El-~las~r~iTvvn~~sGg~~~~~ivpaA~vGavG-----YgYmwWKGws~sD 115 (238)
+++|++.+ .+...+.++.+-|.||.++|.+. -+..|.+. .||+...|.-++.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~--~~l~~~~~~~g~~~g~v~~d~~~~~~ 65 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS--NPLAAALSAQGLPAEVVPMDGFHLDN 65 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH--HHHHHHHHHTTCCEEEEESGGGBCCH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH--HHHHHHHhhcCCceEEEecCCCcCCH
Confidence 34555666 44334456667888887776665 23445554 7888888876654
No 225
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=30.90 E-value=2.9e+02 Score=26.51 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhh
Q 026425 184 VEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
+-..|+.++.+++.+..||..++
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~ 183 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLE 183 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666544
No 226
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=30.70 E-value=39 Score=28.20 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=41.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 129 ~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
.-+-.=|+.+.+.....-+++..+|+.+++++-+. ......++..+|.++-.++.=+...+.++..|.
T Consensus 147 ~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~---~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 214 (264)
T 3nvo_A 147 GWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ---QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLA 214 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33445566677777777777777777777776432 233445566666666666666666666666654
No 227
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=30.38 E-value=2.5e+02 Score=24.56 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEAL 142 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL 142 (238)
.+..+.+..+..+++.+.+.+
T Consensus 167 d~~~~~l~~l~~~i~~lE~~l 187 (339)
T 4ev6_A 167 RSYSRILMNLEDELEELEDKL 187 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666665543
No 228
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=30.24 E-value=15 Score=25.79 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=18.7
Q ss_pred eeeeeeccccchhHHHhHhhHH
Q 026425 104 GYMWWKGLSFADLMYVTRKSMA 125 (238)
Q Consensus 104 gYmwWKGws~sDlMyVTkr~ms 125 (238)
-++.|||++-+|--|-...||.
T Consensus 18 YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 18 YLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEecCCCcCCcEeEHHHCC
Confidence 4579999999998888888884
No 229
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=30.05 E-value=23 Score=28.49 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHHhhhcCCCC------cchHHHHHHHHHHH
Q 026425 31 LPELLRELQSLVERLSKSGEQD------NFTDAIKDQLNRLK 66 (238)
Q Consensus 31 Lsd~~g~lq~~~k~~~k~g~~~------~~~d~L~aQV~~L~ 66 (238)
|+|-++.++.=+......||.. .+.+.|.++|.+|+
T Consensus 15 L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 15 LSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665555555566766 45677777777775
No 230
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=30.03 E-value=1.5e+02 Score=24.92 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhh--HHHHHHHHHhhhhhhhhhhh
Q 026425 162 KQNEISKDIRKNVEEACDDLFKVEHN--LKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~~i~~d--v~~v~~~V~~Le~Ki~~ie~ 207 (238)
+..+.-..||+++..+..++..=..+ ..--...|..||..|+++..
T Consensus 55 ~~~~~L~~IQ~~Lf~lga~la~p~~~~~~~i~~~~v~~LE~~Id~~~~ 102 (193)
T 1rty_A 55 DLTAELLTIQHELFDCGGDLAIVTERKDYKLTEESVSFLETRIDAYTA 102 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHHHh
Confidence 34455556666666666665542110 00012455566666665543
No 231
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=29.81 E-value=1.9e+02 Score=25.62 Aligned_cols=42 Identities=7% Similarity=-0.013 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccccccc
Q 026425 190 DLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGRTT 231 (238)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~p 231 (238)
.+..-+..-+.++..++.-...+..-...+|.|.+....++|
T Consensus 249 ~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~~~ 290 (340)
T 1v9d_A 249 KMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLS 290 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 344555666677777776666666667788888876655544
No 232
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=29.80 E-value=2.9e+02 Score=24.40 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=55.7
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMI 195 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V 195 (238)
+...|.+-.++|...||-+ .--|.-...-|..+|.|+++...+.+.+-+.+..+..+=.....|+..|...+
T Consensus 150 Sl~~Lkk~~~~i~~~LelL----~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Ri 221 (242)
T 3uux_B 150 SPSALKSFSQTLVNSLEFL----NIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRL 221 (242)
T ss_dssp CSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4566777888888888753 44556667789999999999999999999999888887777777777774433
No 233
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=29.77 E-value=1.3e+02 Score=20.17 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhhhHH
Q 026425 166 ISKDIRKNVEEACDDLF 182 (238)
Q Consensus 166 is~~i~~eV~~v~~d~~ 182 (238)
++.+++.-++.+..-++
T Consensus 67 ~shel~~~l~~i~~~~~ 83 (115)
T 3zrx_A 67 VSHDLRTPLTRIRLATE 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 33333333333333333
No 234
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=29.54 E-value=11 Score=34.14 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 026425 164 NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (238)
.+++..++++| .++..+++.++..+..||.|+.+.
T Consensus 33 ~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~ 67 (385)
T 3p8q_A 33 GQVSKQLQSDL-------MKVQEELTKSGTRLFDLEQKLASG 67 (385)
T ss_dssp ------------------------------------------
T ss_pred CCccHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444455555 444455555555556666666554
No 235
>4i78_C Hemagglutinin HA2; influenza VRUS, hemagglutinin homologue, viral protein, ectodomain; HET: NAG FUC; 3.18A {Influenza a virus}
Probab=29.39 E-value=26 Score=29.82 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=50.1
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALT-------VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~-------~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (238)
+.++|-..|...++..|..|.+... ..=.++.+||.+|++++|+...-.=.-..|+-.+ +..+.--.+.|
T Consensus 36 AD~kSTQ~AId~It~KvN~iiekmn~qfe~v~~Ef~~~e~ri~~l~~~vdD~~~dvwsynaELLVlleNe~tld~hDsnv 115 (181)
T 4i78_C 36 ADKEATQKAVDGITNKVNSIIDKMNSQFESNIKEFNRLELRIQHLSDRVDDALLDIWSYNTELLVLLENERTLDFHDANV 115 (181)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTCCCCEEECBCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHccccccchhhHHH
Confidence 5789999999999999988876432 2234677899999999998754333333343322 23344444555
Q ss_pred HHHHHHHH
Q 026425 189 KDLQSMIY 196 (238)
Q Consensus 189 ~~v~~~V~ 196 (238)
.++.+.|+
T Consensus 116 ~nL~ekvr 123 (181)
T 4i78_C 116 KNLFEKVK 123 (181)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 236
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=29.22 E-value=1.1e+02 Score=24.62 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 026425 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (238)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (238)
+.+-|++|.++||.+.- +..-...++|.+- +..+..-+..|+.+|.++..+|.+.
T Consensus 8 ~K~Eiq~L~drLD~~~r-----Klaaa~~rgd~~~----i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRH-----QQADLSLVEAADK----YAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHSCTTTCTTH----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHhCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777776621 1111122333322 2334445566688888888777653
No 237
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=29.15 E-value=94 Score=21.03 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=22.1
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 026425 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (238)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (238)
..|...||+|.++|...++--+.+.+++.-
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457777888888888887777777666643
No 238
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=29.14 E-value=95 Score=26.33 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 026425 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (238)
Q Consensus 135 Le~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (238)
|+.+.+.....-+++..+|+.+++++-+. .....-.++..++.++-.++.=+...+.++..|
T Consensus 162 ld~ivd~y~~~l~~i~~~id~lE~~l~~~--~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L 223 (280)
T 4egw_A 162 LNEITRSYSRILMNLEDELEELEDKLLAG--YDREVMEKILGLRKTLVYFHKSLIANRDVLVLL 223 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 55555555666666666666666554321 122333445555555555555555555555555
No 239
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=28.83 E-value=1.1e+02 Score=25.58 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 162 KQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
+..+.-..||+++..+..++..=..+..--...|..||..|+++..
T Consensus 50 ~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~ 95 (177)
T 1nog_A 50 DIRNDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKEMKA 95 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHh
Confidence 4455556666666666666654211000012555556666665543
No 240
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=28.42 E-value=99 Score=30.04 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q 026425 130 NLNKHLESVTEALTVAKKHLTQ 151 (238)
Q Consensus 130 sv~kqLe~Vs~sL~~tKkhLsq 151 (238)
+++.+|.+|..+|+.++.||.+
T Consensus 427 DISseL~~vn~sl~~a~~~I~~ 448 (497)
T 2b9b_A 427 DISQNLAAVNKSLSDALQHLAQ 448 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999888654
No 241
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=28.28 E-value=1.9e+02 Score=21.77 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHH----HHHHHHHHHHH
Q 026425 188 LKDLQSMIYCLDGKIDSLADKQDI----TNIGMYLLCNF 222 (238)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~kQd~----tn~GV~~Lc~f 222 (238)
+..+..+|..=+.-|++||+|-+. ...|...|-.+
T Consensus 37 F~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA 75 (109)
T 3hd7_B 37 FMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445566677665444 34455555443
No 242
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=28.13 E-value=1.7e+02 Score=24.62 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHH
Q 026425 162 KQNEISKDIRKNVEEACDDLF 182 (238)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~ 182 (238)
+..+.-..||+++..+..++.
T Consensus 58 ~~~~~L~~IQ~~Lf~lga~la 78 (193)
T 2g2d_A 58 QITDVLRQIQNDLFDAGADLS 78 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344555556666666665555
No 243
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=28.06 E-value=69 Score=20.47 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=9.5
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHH
Q 026425 152 RIQNLNDKVEKQNEISKDIRKNVE 175 (238)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~ 175 (238)
|...|.+|+++...=-....+||.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~ 25 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHH
Confidence 334444444444333333333443
No 244
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.75 E-value=1.7e+02 Score=20.97 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 026425 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (238)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (238)
.+=.+-+..=.++|..|..++++.......+..+...++..+..+..++.
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556777888888877777777666666666666655555443
No 245
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=27.60 E-value=65 Score=20.59 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=13.8
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 026425 152 RIQNLNDKVEKQNEISKDIRKNVEEAC 178 (238)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~ 178 (238)
|...+.+|+++...--..+.+||.-++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 444555565555554555555554444
No 246
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.41 E-value=1.6e+02 Score=28.15 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026425 139 TEALTVAKKHLTQRIQ 154 (238)
Q Consensus 139 s~sL~~tKkhLsqRI~ 154 (238)
.+.|++-+..++..|.
T Consensus 53 ~~~l~~~rN~~sk~i~ 68 (484)
T 3lss_A 53 TEASKKLINICSKAVG 68 (484)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 247
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=27.31 E-value=1.2e+02 Score=22.51 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=7.4
Q ss_pred HHHHHHhhHHHHHHHHH
Q 026425 128 VSNLNKHLESVTEALTV 144 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~ 144 (238)
|..+-..|+.+...+..
T Consensus 14 v~~I~~~i~~i~~~v~~ 30 (127)
T 1ez3_A 14 VEEIRGFIDKIAENVEE 30 (127)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 248
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=27.10 E-value=1.1e+02 Score=27.31 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=14.8
Q ss_pred cccccchhhhheeccc----ccceeeccCCCc
Q 026425 4 QAGMSFQKILMLAGLG----YTGTILVKDGKL 31 (238)
Q Consensus 4 q~g~~l~kv~iLvGAG----~~GSvl~k~G~L 31 (238)
..|.+.|.++.. |-. ..-.+.+.+|+.
T Consensus 21 ~~g~~pg~~~~~-~~~~~~~~i~~~~y~~~~~ 51 (363)
T 2iub_A 21 KKGLPPGTLVYT-GKYREDFEIEVMNYSIEEF 51 (363)
T ss_dssp CCSCCTTCCCCC-SSCCSCCEEEEEEECSSCE
T ss_pred CCCCCCcceecc-CCCCCCeEEEEEEEcCCce
Confidence 568888866433 532 123345566665
No 249
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=27.08 E-value=1.9e+02 Score=21.25 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=9.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 026425 129 SNLNKHLESVTEALTVAKKHLT 150 (238)
Q Consensus 129 ~sv~kqLe~Vs~sL~~tKkhLs 150 (238)
+.+-.++++|...+...=..+-
T Consensus 8 ~~vq~ev~evk~iM~~NI~kvL 29 (91)
T 3hd7_A 8 QQTQAQVDEVVDIMRVNVDKVL 29 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 250
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.84 E-value=1.7e+02 Score=22.25 Aligned_cols=40 Identities=5% Similarity=0.160 Sum_probs=28.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Q 026425 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK 172 (238)
Q Consensus 133 kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~ 172 (238)
.+|......+..--.+|+++++.+..++.+..+....++.
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566667777777778888888888887777666665553
No 251
>4gip_D Fusion glycoprotein F1; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=26.68 E-value=46 Score=31.52 Aligned_cols=53 Identities=19% Similarity=0.464 Sum_probs=18.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 026425 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (238)
Q Consensus 130 sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (238)
.++..|..|..+|..|+++| |+.+.+-+.+++++.++-.++-+|..++..++.
T Consensus 346 DIsteL~~vn~~L~~A~~~l-----------~~Sn~iL~svn~Ki~~~~~~~~~~~~~~~~~~~ 398 (409)
T 4gip_D 346 DISQNLAAVNKSLSDALQHL-----------AQSDTYLSAIEDKIEEILSKIYHIENEIARIKK 398 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHTC-----------------------
T ss_pred chhhhHHHHHHHHHHHHHHH-----------HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777776654 334444445555555555555555555555543
No 252
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.55 E-value=76 Score=20.25 Aligned_cols=27 Identities=11% Similarity=0.136 Sum_probs=12.3
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 026425 152 RIQNLNDKVEKQNEISKDIRKNVEEAC 178 (238)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~ 178 (238)
|...+.+|+++...--...++||.-++
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344455555544444444444444433
No 253
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=26.54 E-value=63 Score=21.97 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=16.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 026425 131 LNKHLESVTEALTVAKKHLTQ 151 (238)
Q Consensus 131 v~kqLe~Vs~sL~~tKkhLsq 151 (238)
++.+|.++..+|++++.||.+
T Consensus 12 ISseL~~iNnsL~~A~~~I~e 32 (48)
T 2fyz_B 12 ISTELSKVNASLQNTVKYIKE 32 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888887654
No 254
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A {Nitrosomonas europaea} SCOP: a.138.1.3
Probab=26.40 E-value=29 Score=33.53 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=8.0
Q ss_pred heeeeeeecc
Q 026425 102 GYGYMWWKGL 111 (238)
Q Consensus 102 GYgYmwWKGw 111 (238)
...|.||.||
T Consensus 462 ~~~~~~~~G~ 471 (546)
T 1fgj_A 462 PGGWTYTEGW 471 (546)
T ss_dssp GGGTSSSSTH
T ss_pred CCccceecch
Confidence 3459999999
No 255
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.37 E-value=2.1e+02 Score=23.76 Aligned_cols=6 Identities=17% Similarity=0.672 Sum_probs=2.3
Q ss_pred HHHHHH
Q 026425 211 ITNIGM 216 (238)
Q Consensus 211 ~tn~GV 216 (238)
.+.+||
T Consensus 140 m~KeGi 145 (175)
T 3lay_A 140 MAQAGI 145 (175)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 333344
No 256
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=26.37 E-value=9.8 Score=32.41 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.7
Q ss_pred hheeccccccee
Q 026425 13 LMLAGLGYTGTI 24 (238)
Q Consensus 13 ~iLvGAG~~GSv 24 (238)
+++||||++|..
T Consensus 4 V~IVGaGpaGl~ 15 (412)
T 4hb9_A 4 VGIIGAGIGGTC 15 (412)
T ss_dssp EEEECCSHHHHH
T ss_pred EEEECcCHHHHH
Confidence 468899999864
No 257
>2yp5_A Hemagglutinin, haemagglutinin; viral protein, receptor binding, membrane fusion, influenza evolution, glycoprotein; HET: NAG MAN EPE TAM SIA; 1.79A {Influenza a virus} PDB: 2yp2_A* 2yp3_A* 2yp4_A* 2yp9_A* 2yp7_A* 2yp8_A* 1ha0_A* 3vun_A* 1mqm_A* 1mql_A* 1mqn_A* 3ztj_A* 1hge_A* 1hgd_A* 2hmg_A* 1hgh_A* 1hgf_A* 1hgg_A* 1eo8_A* 1hgi_A* ...
Probab=26.31 E-value=25 Score=34.23 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=50.9
Q ss_pred HhHhhHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 026425 119 VTRKSMATAVSNLNKHLESVTE-------ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~-------sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (238)
|-++|=.+|.+.++..|-.+.| ++...=.+|..||++|++|+|+...=.=.-..|+-.+ +..+..-..+|
T Consensus 365 AD~kSTQ~AId~It~KvN~iiek~n~qf~~i~~Ef~~le~ri~~l~~~vdD~~~diwsynaELlVlleNe~tld~~Dsnv 444 (503)
T 2yp5_A 365 ADLKSTQAAINQINGKLNRLIGKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEM 444 (503)
T ss_dssp ECHHHHHHHHHHHHHHHHHHSSCCEEECSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhcccccchhhHHH
Confidence 4689999999999999888865 3444445788999999999998743332233332222 23344445566
Q ss_pred HHHHHHHH
Q 026425 189 KDLQSMIY 196 (238)
Q Consensus 189 ~~v~~~V~ 196 (238)
.++.+.|+
T Consensus 445 ~nL~ekvr 452 (503)
T 2yp5_A 445 NKLFERTK 452 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
No 258
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.31 E-value=88 Score=27.82 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=18.0
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 026425 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (238)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (238)
.|..+++.+..+.+.+.+..+..++|+..+++.+++
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444555555444444433
No 259
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=26.30 E-value=61 Score=20.31 Aligned_cols=24 Identities=13% Similarity=0.337 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 169 DIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
.|+.|+..++..+..|.+++..++
T Consensus 6 aikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777778777764
No 260
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.13 E-value=1.8e+02 Score=21.09 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
+..--.+|.-||...++.+|+.+++.-.=+.++..++..+..+..-+.++.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445677788888888888888877777888777766666555555443
No 261
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.95 E-value=1.9e+02 Score=20.89 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 026425 168 KDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 168 ~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (238)
.....++..++.|+.+.-.|-+.+-.+=..||-.|
T Consensus 36 ~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 36 GRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33455566666666666556555555544555444
No 262
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=25.51 E-value=1.9e+02 Score=20.83 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=4.1
Q ss_pred hHHHHHHHHHH
Q 026425 123 SMATAVSNLNK 133 (238)
Q Consensus 123 ~ms~Av~sv~k 133 (238)
.|.++...+..
T Consensus 15 ~l~~~a~~~~~ 25 (103)
T 4i0x_B 15 HIEQVTSRARG 25 (103)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 263
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=25.50 E-value=2.1e+02 Score=21.38 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=9.0
Q ss_pred HHhhhhHHHHHHHHHhhhhhh
Q 026425 182 FKVEHNLKDLQSMIYCLDGKI 202 (238)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki 202 (238)
+.|..-++.|+..+..+..|+
T Consensus 71 e~ik~k~~eL~~~~~~i~~k~ 91 (120)
T 2p32_A 71 EEFEHQQKDLEGLANPIISKL 91 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 264
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=25.34 E-value=1.7e+02 Score=20.19 Aligned_cols=42 Identities=5% Similarity=0.192 Sum_probs=25.6
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 026425 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (238)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (238)
+++..+..++..+..=+..+..+|..=+.-|++||+|-+-|.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 51 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQ 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555555555666666666666777777776654443
No 265
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=25.33 E-value=1.8e+02 Score=24.14 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 162 KQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
+..+.-..||+++..+..++..=..+..--...|..||..|+++.
T Consensus 49 ~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~ 93 (177)
T 1woz_A 49 DMKKDLERVQVELFEIGEDLSTQSSKKKIDEKYVKWLEERTVEYR 93 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCHHHHHHHHHHHHHHH
Confidence 455555666666666666665421100001244555566665544
No 266
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.29 E-value=1.9e+02 Score=20.84 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=10.7
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHH
Q 026425 152 RIQNLNDKVEKQNEISKDIRKNVE 175 (238)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~ 175 (238)
.++.+..++++..+-...+..++.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444443
No 267
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=25.17 E-value=1.8e+02 Score=26.30 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHH
Q 026425 123 SMATAVSNLNKHLESVTEALTVAK 146 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tK 146 (238)
|+.+..+++.++++++...+++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 244 NFDEYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444443
No 268
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.17 E-value=2.6e+02 Score=22.31 Aligned_cols=72 Identities=11% Similarity=0.221 Sum_probs=40.4
Q ss_pred HHHHHHH----hhHHHHHHHHHHH---HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 127 AVSNLNK----HLESVTEALTVAK---KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 127 Av~sv~k----qLe~Vs~sL~~tK---khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
-|-+++. ||.+-.+.|..+. ---.+-+..|-+.|++-+.-. ++.| ..+.++|..+++.+...+
T Consensus 22 ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~v-------qeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 22 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKV-------EELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4555554 4455666676666 233445555556665432221 3344 445566666777777777
Q ss_pred hhhhhhhhh
Q 026425 200 GKIDSLADK 208 (238)
Q Consensus 200 ~Ki~~ie~k 208 (238)
.+++++...
T Consensus 92 ae~erlr~~ 100 (121)
T 3mq7_A 92 AEVERLRRE 100 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777776643
No 269
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=24.88 E-value=1.7e+02 Score=20.07 Aligned_cols=42 Identities=7% Similarity=0.122 Sum_probs=26.9
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 026425 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (238)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (238)
+++..+..++..++.=+..+..+|..=+.-|++||++-+-|.
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 53 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 53 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445555555556666666666777777777888887655443
No 270
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=24.84 E-value=97 Score=21.30 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRI 153 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI 153 (238)
=..||.+++..+.++-.++.+.++++..-|
T Consensus 16 TNeAV~~L~~g~~~la~Av~~iQ~~IN~~i 45 (51)
T 3kpe_A 16 TNKAVVSLSNGVSVLTSKVLDLKNYIDKQL 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888888888888776544
No 271
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.73 E-value=66 Score=21.92 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=11.4
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 181 LFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 181 ~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
|.++..|++.+..-...|..++.+++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555554443
No 272
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=24.69 E-value=48 Score=28.88 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
..|..+.-|+++.+.||-..-..+..||.|+..+|
T Consensus 4 ~~v~~~st~v~NlkssVS~~~l~ls~L~~Rv~~le 38 (211)
T 2vrs_A 4 TTVDGNSTAISNLKSDISSNGLAITDLQDRVKSLE 38 (211)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhchhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34566667777777777777777777888887777
No 273
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=24.41 E-value=2.7e+02 Score=22.18 Aligned_cols=81 Identities=14% Similarity=0.193 Sum_probs=45.4
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH-----HHHHH------H------HHHHhhhhHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEI-----SKDIR------K------NVEEACDDLF 182 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~ei-----s~~i~------~------eV~~v~~d~~ 182 (238)
.++.+..-...+.+.|+...+++..--..+..+|...|+++|+...- .+.+. . .+..+-.+++
T Consensus 16 ~~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l~i~~~lE 95 (227)
T 1t72_A 16 TKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLE 95 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666554455666777777776654321 11111 1 1223456777
Q ss_pred HhhhhHHHHHHHHHhhhh
Q 026425 183 KVEHNLKDLQSMIYCLDG 200 (238)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~ 200 (238)
+||+-..+|-+.+..+..
T Consensus 96 RIgD~a~nIa~~~~~~~~ 113 (227)
T 1t72_A 96 RMGDEAENIAERAILLAE 113 (227)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 777777777666555443
No 274
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=23.92 E-value=1.4e+02 Score=26.82 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Q 026425 166 ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (238)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (238)
+....++++.++.+-+++++..+.++-.+|..=.--|+-+-..|. ..-||.|+.
T Consensus 380 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 433 (463)
T 2xz3_A 380 LIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLYIRLG-----FQSLCPTIN 433 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHhC-----cCccchhhc
Confidence 345666667777777777777777777777665555666655554 334566553
No 275
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=23.89 E-value=2e+02 Score=20.53 Aligned_cols=52 Identities=8% Similarity=0.071 Sum_probs=33.2
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH----HHHHHHHHHHHHh
Q 026425 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD----ITNIGMYLLCNFV 223 (238)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd----~tn~GV~~Lc~f~ 223 (238)
+++..+..++..++.=+..+..+|..=+.-|++||+|-+ .+..|...|..+.
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666666777777778888886654 4555666665544
No 276
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.85 E-value=63 Score=28.74 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=30.1
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 026425 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (238)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (238)
.|+..+..++++..+--+.++++..+++..+.+.+.+++.+++
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677777777666666666677777777777777777777653
No 277
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.82 E-value=1.9e+02 Score=20.17 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=21.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 026425 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (238)
Q Consensus 128 v~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd 157 (238)
.+.+-.|++.|...+......+..|-++|+
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~ 35 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLS 35 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777888888777777755544
No 278
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=23.80 E-value=1.3e+02 Score=18.42 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHH
Q 026425 139 TEALTVAKKHLTQRIQNLNDKVEK 162 (238)
Q Consensus 139 s~sL~~tKkhLsqRI~~vd~kld~ 162 (238)
|++|..--..|.++++.+..||+.
T Consensus 3 wealekkcaalesklqalekklea 26 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666556677778888777764
No 279
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.79 E-value=3.8e+02 Score=23.65 Aligned_cols=19 Identities=5% Similarity=0.293 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 026425 124 MATAVSNLNKHLESVTEAL 142 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL 142 (238)
..+.+..+...+|.+.+.+
T Consensus 193 y~~~l~~l~~~id~lE~~v 211 (363)
T 2iub_A 193 YFVLLEKIDDEIDVLEEEV 211 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554443
No 280
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=23.74 E-value=3e+02 Score=24.63 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=27.8
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 026425 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (238)
Q Consensus 119 VTkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (238)
|.-+.|..+++...+--++-...|...=..+..|+..+|+++++...-+..|.++|..+
T Consensus 198 VNv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T 2yo3_A 198 VNYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARI 256 (268)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444433333334444434444444445555555555555555555443
No 281
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.68 E-value=85 Score=20.03 Aligned_cols=9 Identities=44% Similarity=0.567 Sum_probs=3.5
Q ss_pred hhHHhHHHH
Q 026425 155 NLNDKVEKQ 163 (238)
Q Consensus 155 ~vd~kld~~ 163 (238)
.|.+|.++.
T Consensus 5 QLEdkVEeL 13 (34)
T 2hy6_A 5 QLADAVEEL 13 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333443333
No 282
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=23.63 E-value=59 Score=28.18 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=27.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 026425 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (238)
Q Consensus 130 sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (238)
++.++|.+++..+..| =++.+..+-|+-..+.+.-.++=+|+.-.+.++..|++++..-.+.|-. ..|...|
T Consensus 4 ~L~~dls~Lsq~m~~~------LLe~i~~~YddY~~fC~~f~~~n~E~l~eLQ~v~~Dl~~F~~QL~qL~~--~~i~~Tr 75 (204)
T 2jqq_A 4 SLIRDLSGLSQKMVQT------LLEQIRSNYDDYLTFSNTYTDEENETLINLEKTQSDLQKFMTQLDHLIK--DDISNTQ 75 (204)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHHHHHHHH--HSCSTTH
T ss_pred hHHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHH
Confidence 4455555555555444 2567778888888888888887788888888888998888666655543 3567788
Q ss_pred HHHHHHHHHHHH
Q 026425 210 DITNIGMYLLCN 221 (238)
Q Consensus 210 d~tn~GV~~Lc~ 221 (238)
+..+.-|.||=.
T Consensus 76 e~v~d~l~YLkk 87 (204)
T 2jqq_A 76 EIIKDVLEYLKK 87 (204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999988843
No 283
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.58 E-value=66 Score=30.00 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (238)
|.+..++|+.+..++.+..+-.+.++.+-.++...+..+.++++
T Consensus 20 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~ 63 (405)
T 4b4t_J 20 KPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELR 63 (405)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666655555544444444444444444444444443
No 284
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=23.56 E-value=1.1e+02 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=12.0
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHH
Q 026425 118 YVTRKSMATAVSNLNKHLESVTEALTVAK 146 (238)
Q Consensus 118 yVTkr~ms~Av~sv~kqLe~Vs~sL~~tK 146 (238)
+-|+--|.++.+.++|+++++++-|+.+-
T Consensus 14 ~~s~eel~~~L~~~~k~~~Hl~~LL~EsE 42 (71)
T 3bbp_D 14 EFTKEELVQKLSSTTKSADHLNGLLRETE 42 (71)
T ss_dssp ---------------CTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45888999999999999999999988763
No 285
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.52 E-value=1.3e+02 Score=23.59 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh-hhHHHh--------------hhhHHH
Q 026425 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC-DDLFKV--------------EHNLKD 190 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~-~d~~~i--------------~~dv~~ 190 (238)
+.....-..|.++++.|..-..++..||+++-+++.+...-.+..+.+..... .++..- +.|.+.
T Consensus 7 ~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~~~~i~g~~~~~~~~~~d~~~ 86 (171)
T 2zvf_A 7 EAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVAEVVDADMQA 86 (171)
T ss_dssp HHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEEEEECSCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEeCCEEEEEEEeCCCHHH
Q ss_pred HHHHHHhhhhh
Q 026425 191 LQSMIYCLDGK 201 (238)
Q Consensus 191 v~~~V~~Le~K 201 (238)
++.++..|-.+
T Consensus 87 lr~~~~~l~~~ 97 (171)
T 2zvf_A 87 LQKLAERLAEK 97 (171)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
No 286
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=23.34 E-value=12 Score=34.12 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=13.2
Q ss_pred hheecccccceeecc
Q 026425 13 LMLAGLGYTGTILVK 27 (238)
Q Consensus 13 ~iLvGAG~~GSvl~k 27 (238)
+|+||+|.+|++++.
T Consensus 20 ~IIVGsG~aG~v~A~ 34 (526)
T 3t37_A 20 IVIVGGGSAGSLLAA 34 (526)
T ss_dssp EEEECCSHHHHHHHH
T ss_pred EEEECccHHHHHHHH
Confidence 599999999999874
No 287
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=23.03 E-value=87 Score=20.02 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=17.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 026425 131 LNKHLESVTEALTVAKKHLTQR 152 (238)
Q Consensus 131 v~kqLe~Vs~sL~~tKkhLsqR 152 (238)
++.+|.++..+|++++.||.+=
T Consensus 10 IS~eL~~~n~sl~~A~~~l~~S 31 (38)
T 1svf_B 10 ISQNLAAVNKSLSDALQHLAQS 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887653
No 288
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=22.90 E-value=2e+02 Score=20.02 Aligned_cols=12 Identities=8% Similarity=0.338 Sum_probs=5.2
Q ss_pred HhhHHHHHHHHH
Q 026425 133 KHLESVTEALTV 144 (238)
Q Consensus 133 kqLe~Vs~sL~~ 144 (238)
..|++++..+..
T Consensus 10 ~nLd~l~~~~~r 21 (64)
T 3b5n_D 10 RNLDQIQQVSNR 21 (64)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 344444444433
No 289
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.84 E-value=3.3e+02 Score=22.68 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccccccc
Q 026425 188 LKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGRTT 231 (238)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~p 231 (238)
.+.++.++..||....+++.+=+....-+..+=+|..-++..-|
T Consensus 58 ~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~ 101 (174)
T 2p22_A 58 KNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDE 101 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 34444444555555555544444444434445556544433333
No 290
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=22.81 E-value=61 Score=27.16 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=36.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 026425 132 NKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 132 ~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (238)
-.=|+.+.+.....-+++..+|+.+++++-+... ....++..++.++-.++.=+...+.++..|.
T Consensus 175 ~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~---~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 239 (266)
T 2hn1_A 175 YTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS---TLIGKIHSLKREILAFRNAVWPLRDVLSFFT 239 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777766532211 2233455555555555555555555555553
No 291
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=22.63 E-value=2e+02 Score=25.90 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHhhhhhhhhhh
Q 026425 186 HNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie 206 (238)
.|++.|.+++..|-.|+++|-
T Consensus 244 ~~l~~vd~l~~~Lq~klDRI~ 264 (287)
T 1t98_A 244 DDLHFVDRLVFDLQSKLDRII 264 (287)
T ss_dssp SSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 466678888999999999875
No 292
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=22.40 E-value=1.6e+02 Score=24.38 Aligned_cols=10 Identities=30% Similarity=0.272 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 026425 59 KDQLNRLKFE 68 (238)
Q Consensus 59 ~aQV~~L~~E 68 (238)
..|++.|..+
T Consensus 57 ~~el~~l~~e 66 (191)
T 1nfn_A 57 TQELRALMDE 66 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 293
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.39 E-value=2.2e+02 Score=27.76 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=3.1
Q ss_pred CCeEE-Ee
Q 026425 75 GQIFV-RN 81 (238)
Q Consensus 75 r~iTv-vn 81 (238)
.|+.+ +|
T Consensus 231 ~~iiiVlN 238 (695)
T 2j69_A 231 LTVFFLVN 238 (695)
T ss_dssp CCEEEEEE
T ss_pred CCEEEEEE
Confidence 34444 45
No 294
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.39 E-value=2.4e+02 Score=26.14 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (238)
..|++.+..+-++.+++-+.+...+.+ ++.+..+|-+....-+..-+++.++++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~----~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAE----LETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444444444444444443333222 223333333333333444455555544
No 295
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=22.37 E-value=3.4e+02 Score=22.57 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHH-----HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 138 VTEALTVAKKHLTQRIQNLNDKVEKQ-----NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 138 Vs~sL~~tKkhLsqRI~~vd~kld~~-----~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
.-.....+|..|..-|-.+..+|++. .+--+.+.+.+.+++.=+. +.|.+.++.....|+.....|..
T Consensus 137 ~~~e~~e~kn~le~~i~~~~~~l~~~~~~~~~~~k~~i~~~l~~~~~wl~--~~d~~~~~~~~~~L~~~~~~i~~ 209 (227)
T 1u00_A 137 KARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQ--GDDVDAIEQAIKNVDKQTQDFAA 209 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHH
Confidence 33445666667777777777776642 1222334444444443332 44666777777777666665554
No 296
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.37 E-value=67 Score=21.28 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=6.6
Q ss_pred hhhhhhhhhhhhhHH
Q 026425 197 CLDGKIDSLADKQDI 211 (238)
Q Consensus 197 ~Le~Ki~~ie~kQd~ 211 (238)
.||.+|+.+|.|=+.
T Consensus 20 ~LE~Ri~~LE~KLd~ 34 (43)
T 2pnv_A 20 DFEKRIVTLETKLET 34 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 297
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.37 E-value=1.6e+02 Score=20.76 Aligned_cols=35 Identities=11% Similarity=0.428 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 026425 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (238)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (238)
..+..|.++++.++.++++..++.+.+..-+....
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666666665555554443
No 298
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.34 E-value=2.4e+02 Score=21.99 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 026425 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (238)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (238)
+..|.++++.++.++++..+..+.+.+.+
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKI 125 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 299
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=22.30 E-value=1.8e+02 Score=21.83 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 185 EHNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
..=+++|+++....|.=||+....-+
T Consensus 58 k~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 58 KLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456777788888888887765544
No 300
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=22.28 E-value=2.5e+02 Score=20.97 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=37.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHH--hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 026425 132 NKHLESVTEALTVAKKHLTQRIQNLND--KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (238)
Q Consensus 132 ~kqLe~Vs~sL~~tKkhLsqRI~~vd~--kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (238)
+.-+++--+-....-..++++|..+-. .-++-+.....++..+.++.+=|.++.-++.++.
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555555555555666666666522 1255566677777777777777777777766654
No 301
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=22.21 E-value=25 Score=34.69 Aligned_cols=11 Identities=45% Similarity=1.325 Sum_probs=9.5
Q ss_pred hheeeeeeecc
Q 026425 101 LGYGYMWWKGL 111 (238)
Q Consensus 101 vGYgYmwWKGw 111 (238)
+-|+|.||||.
T Consensus 522 vty~~f~wkgk 532 (584)
T 4dpv_Z 522 VTYSDFWWKGK 532 (584)
T ss_dssp CEEEEEEEEEE
T ss_pred EEEeeEEEccE
Confidence 56999999994
No 302
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=21.96 E-value=69 Score=23.53 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=12.9
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 181 LFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 181 ~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
+..+..-++.+...+.-||.|+.+|.
T Consensus 47 La~ln~kL~~lE~~L~iLEAklsSI~ 72 (73)
T 3pp5_A 47 LSDLNEKLTILDRQVDYLEATFKTVQ 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34444444445555555666666553
No 303
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=21.94 E-value=4.3e+02 Score=25.67 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=9.7
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHH
Q 026425 150 TQRIQNLNDKVEKQNEISKDIRKNV 174 (238)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV 174 (238)
.++++.+...+++.......+++++
T Consensus 365 ~~~l~~~~~~~~~l~~~~~~~~~~l 389 (695)
T 2j69_A 365 KKRIDSVEPEFNKLTGIRDEFQKEI 389 (695)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333333333
No 304
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.91 E-value=3.9e+02 Score=24.63 Aligned_cols=10 Identities=10% Similarity=0.547 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 026425 144 VAKKHLTQRI 153 (238)
Q Consensus 144 ~tKkhLsqRI 153 (238)
+-+..++..|
T Consensus 49 ~~~n~~sk~i 58 (421)
T 1ses_A 49 TERNQVAKRV 58 (421)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 305
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=21.89 E-value=1.3e+02 Score=24.01 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 026425 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (238)
Q Consensus 136 e~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (238)
-+|++.|+.==.+|..| ++.++.....+...|+++|.++++
T Consensus 21 ~qvsedLrrrIe~LkrK---V~~Qvq~i~~Lq~nVrdQvveMkR 61 (119)
T 1lwu_A 21 SEVLRELERRIIHLQRR---INMQLQQLTLLQHNIKTQVSQILR 61 (119)
T ss_dssp HHHHTTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544555555 456788888999999999888765
No 306
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=21.70 E-value=3e+02 Score=21.65 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLT 150 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLs 150 (238)
|..-|.+++.+-+.|.++.+..+-.-++
T Consensus 5 nit~a~~~~n~Ai~~~~~gf~tv~~Al~ 32 (109)
T 2ieq_A 5 NIVASFSSVNDAITQTAEAIHTVTIALN 32 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666544443
No 307
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=21.68 E-value=1.2e+02 Score=26.37 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=6.1
Q ss_pred HHHhhHHhHHHH
Q 026425 152 RIQNLNDKVEKQ 163 (238)
Q Consensus 152 RI~~vd~kld~~ 163 (238)
||.+|++++|+.
T Consensus 11 ~~~~l~~~~e~l 22 (220)
T 2gtl_N 11 LIIRLDRIIEKL 22 (220)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 308
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=21.60 E-value=3.8e+02 Score=23.88 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=15.5
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHH
Q 026425 172 KNVEEACDDLFKVEHNLKDLQSMIY 196 (238)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (238)
++...+.+.|....+++.+++.++.
T Consensus 255 ~d~~~l~E~L~~Y~~~l~avKd~l~ 279 (366)
T 3dyt_A 255 KDLHFLMECNHEYKGFLGCFPDIIG 279 (366)
T ss_dssp GTHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666677766666553
No 309
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.52 E-value=2.2e+02 Score=23.47 Aligned_cols=9 Identities=11% Similarity=0.564 Sum_probs=5.1
Q ss_pred eeccccchh
Q 026425 108 WKGLSFADL 116 (238)
Q Consensus 108 WKGws~sDl 116 (238)
--|.|+.++
T Consensus 61 ~~g~~l~~i 69 (278)
T 1r8e_A 61 YIGTPLEEM 69 (278)
T ss_dssp HTTCCHHHH
T ss_pred HCCCCHHHH
Confidence 346666664
No 310
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=21.43 E-value=1e+02 Score=24.40 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=12.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 026425 132 NKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (238)
Q Consensus 132 ~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~ 163 (238)
..||.+|...+.. +.+||++|+.++|+.
T Consensus 24 g~QL~~v~~~v~~----~~~~in~L~~~I~~~ 51 (129)
T 2gr7_A 24 GSQLYAVAKGVTN----LAGQVNNLEGKVNKV 51 (129)
T ss_dssp -----CHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3566666555532 456666666665544
No 311
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=21.38 E-value=2.2e+02 Score=22.50 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHhhHHhHHHHHH
Q 026425 122 KSMATAVSNLNKHLESVTEALTVAKK------HLTQRIQNLNDKVEKQNE 165 (238)
Q Consensus 122 r~ms~Av~sv~kqLe~Vs~sL~~tKk------hLsqRI~~vd~kld~~~e 165 (238)
+.+..+|.+++++|+++...|....+ +...-+-.||.++--..|
T Consensus 14 ~~veksv~~~~kkl~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E 63 (114)
T 1hx1_B 14 KHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIE 63 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHH
Confidence 45667888889999998888876543 333334445555444433
No 312
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=21.22 E-value=12 Score=33.21 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=11.7
Q ss_pred hhhheecccccceeecc
Q 026425 11 KILMLAGLGYTGTILVK 27 (238)
Q Consensus 11 kv~iLvGAG~~GSvl~k 27 (238)
||+| +|||++|+.+++
T Consensus 18 kilv-lGaG~vG~~~~~ 33 (365)
T 3abi_A 18 KVLI-LGAGNIGRAIAW 33 (365)
T ss_dssp EEEE-ECCSHHHHHHHH
T ss_pred EEEE-ECCCHHHHHHHH
Confidence 5554 599999987654
No 313
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=21.18 E-value=3.9e+02 Score=22.81 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=27.5
Q ss_pred HHHHHHHHHH---HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 026425 164 NEISKDIRKN---VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (238)
Q Consensus 164 ~eis~~i~~e---V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (238)
.|.+..++.- -.++-++.++--...+..+..+..+|.|+..++.+
T Consensus 92 ~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~k 139 (201)
T 3u0c_A 92 LEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTR 139 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444533 33344455555666777778888888888777644
No 314
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.04 E-value=2.7e+02 Score=20.90 Aligned_cols=7 Identities=43% Similarity=0.468 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 026425 143 TVAKKHL 149 (238)
Q Consensus 143 ~~tKkhL 149 (238)
..-|+||
T Consensus 43 ~~LKkkl 49 (84)
T 1gmj_A 43 AALKKHK 49 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3345554
No 315
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=21.02 E-value=2.6e+02 Score=20.72 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 026425 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNL 156 (238)
Q Consensus 123 ~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~v 156 (238)
+.......++-....|+..+..++++|...+...
T Consensus 43 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~ 76 (113)
T 1xsv_A 43 SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL 76 (113)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777888899999999998887653
No 316
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=20.95 E-value=1.2e+02 Score=21.47 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHhhhhhhh
Q 026425 185 EHNLKDLQSMIYCLDGKID 203 (238)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~ 203 (238)
|.+++.+.+-|..||..|.
T Consensus 47 ggevkkveeevkkleeeik 65 (67)
T 1lq7_A 47 GGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp SSTHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHh
Confidence 4577777777777776654
No 317
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=20.91 E-value=2.2e+02 Score=20.76 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=7.3
Q ss_pred HhhHHHHHHHHHHhhH
Q 026425 121 RKSMATAVSNLNKHLE 136 (238)
Q Consensus 121 kr~ms~Av~sv~kqLe 136 (238)
|-++.+-|-++-+.|+
T Consensus 6 rN~aE~~iy~~e~~L~ 21 (113)
T 1ud0_A 6 SHMLESYAFNMKATVE 21 (113)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3344444444444443
No 318
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=20.87 E-value=3.2e+02 Score=21.70 Aligned_cols=80 Identities=10% Similarity=0.121 Sum_probs=48.0
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH-----HH------------HHHHHhhhhHH
Q 026425 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD-----IR------------KNVEEACDDLF 182 (238)
Q Consensus 120 Tkr~ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~-----i~------------~eV~~v~~d~~ 182 (238)
.++.+..-+..+.+.|+...+++..--..+..+|...|+.+|+...-... +. -.+..+-.+++
T Consensus 12 ~~~~l~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~p~~~d~~~~~~~l~i~~~lE 91 (217)
T 1xwm_A 12 LHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFALWLIAAQQPVATDLRRIVAAIKIASDIE 91 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 34555666666677777777777766667777787777777765322211 11 11233446777
Q ss_pred HhhhhHHHHHHHHHhhh
Q 026425 183 KVEHNLKDLQSMIYCLD 199 (238)
Q Consensus 183 ~i~~dv~~v~~~V~~Le 199 (238)
+||+-..+|-..+..+.
T Consensus 92 RIgD~a~nIa~~~~~~~ 108 (217)
T 1xwm_A 92 RIADFAVNIAKACIRIG 108 (217)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77777777666555443
No 319
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=20.84 E-value=2.2e+02 Score=20.29 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 026425 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (238)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (238)
.++++|.+++.|......=++..+.+=..||.-+-++-.+++
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456777777777777777777777777777776666655544
No 320
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=20.83 E-value=3.4e+02 Score=21.99 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=9.5
Q ss_pred HHHHHHHhhhhhhhhhh
Q 026425 190 DLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie 206 (238)
..-..|..+|.+.+.++
T Consensus 161 ~~~~~i~~lE~~~D~l~ 177 (227)
T 2olt_A 161 KMINELDIIEEDTDDLQ 177 (227)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33345566666666655
No 321
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=20.72 E-value=2.3e+02 Score=28.55 Aligned_cols=84 Identities=15% Similarity=0.296 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH-HHHHHHHHHHHHHHhhhhHHHhhhhHHH-----HHHHHHh
Q 026425 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK-QNEISKDIRKNVEEACDDLFKVEHNLKD-----LQSMIYC 197 (238)
Q Consensus 124 ms~Av~sv~kqLe~Vs~sL~~tKkhLsqRI~~vd~kld~-~~eis~~i~~eV~~v~~d~~~i~~dv~~-----v~~~V~~ 197 (238)
|.+++.-|++++.++...++++|+++...-.+..+..|+ ..+--+...++|...+..++....+.+. ++.-|.-
T Consensus 622 l~~ti~kv~~rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~~l~~~~~~~k~l~~~~~~~fv~~ 701 (771)
T 1h2v_C 622 LHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI 701 (771)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888888888887777766633222111111 1111222234455555555555555444 3444555
Q ss_pred hhhhhhhhhh
Q 026425 198 LDGKIDSLAD 207 (238)
Q Consensus 198 Le~Ki~~ie~ 207 (238)
|-..+..-+.
T Consensus 702 l~~~~~~~~~ 711 (771)
T 1h2v_C 702 LTEHLVRCET 711 (771)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhccchhc
Confidence 5555544333
No 322
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.64 E-value=2.7e+02 Score=20.83 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
.+...|.+|.+.|.+ -=.+++-++.+++-.+..+.-..++..++...+..+..|..+|.+++
T Consensus 22 ~le~~r~~ir~eI~K----ElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 22 QLELERERLRREIRK----ELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555543 23345556666655555444455566666666666666666665554
No 323
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=20.63 E-value=2.5e+02 Score=20.36 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH-----HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 026425 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIR-----KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (238)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~-----~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (238)
.|..+..-|.++...++.+++++.++++.-- .-...++.. ......++.+.....+||.-+..||
T Consensus 10 ~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~aLkrK-K~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 10 RLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRK-KRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666777778888888887777666421 112222221 2234455555555555565555443
No 324
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=20.61 E-value=1.6e+02 Score=26.44 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=10.6
Q ss_pred cchhHHHhHhhHHHHH
Q 026425 113 FADLMYVTRKSMATAV 128 (238)
Q Consensus 113 ~sDlMyVTkr~ms~Av 128 (238)
.++|=+||.-.|++..
T Consensus 23 ~~eLe~V~n~tL~gil 38 (279)
T 3p8c_D 23 KNELECVTNISLANII 38 (279)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677777777666654
No 325
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=20.47 E-value=70 Score=26.54 Aligned_cols=44 Identities=5% Similarity=0.178 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 026425 162 KQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (238)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (238)
+..++-..||+++..+..++. +....--...|..||..|+++..
T Consensus 49 ~~~~~L~~IQ~~Lf~lga~la--~~~~~i~~~~v~~LE~~id~~~~ 92 (172)
T 1wvt_A 49 ELSEVIQKLQNDIFSISSEIA--GFDMNFSDEKVKGIEELITNYSK 92 (172)
T ss_dssp GGHHHHHHHHHHHHHHHHHHT--TCCCCCCTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHh
Confidence 455666677777777777766 21100011445555666665543
No 326
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=20.41 E-value=3.3e+02 Score=22.51 Aligned_cols=77 Identities=14% Similarity=0.289 Sum_probs=37.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH-HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh---HHHHHHHHHhhhhhhhhh
Q 026425 130 NLNKHLESVTEALTVAKKHLTQ-RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN---LKDLQSMIYCLDGKIDSL 205 (238)
Q Consensus 130 sv~kqLe~Vs~sL~~tKkhLsq-RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d---v~~v~~~V~~Le~Ki~~i 205 (238)
.+...+|.+-+.+.++=+.+.- +++.++..+.++.++....-+++.++=..+.+++.| +...-.-|..+|.+.|.+
T Consensus 98 ~L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~~~~~~~i~~~~~eI~~lE~eaD~l 177 (227)
T 3l39_A 98 DLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDV 177 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666665555542 233334444444444333333333333333333324 344444566777777766
Q ss_pred h
Q 026425 206 A 206 (238)
Q Consensus 206 e 206 (238)
.
T Consensus 178 ~ 178 (227)
T 3l39_A 178 Y 178 (227)
T ss_dssp H
T ss_pred H
Confidence 4
No 327
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=20.18 E-value=3.4e+02 Score=21.81 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=11.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 026425 126 TAVSNLNKHLESVTEALTVAK 146 (238)
Q Consensus 126 ~Av~sv~kqLe~Vs~sL~~tK 146 (238)
+-|..+...+++++..+....
T Consensus 47 ~~ve~i~~~i~~i~~~v~el~ 67 (279)
T 3c98_B 47 EQVEEIRGFIDKIAENVEEVK 67 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555443
Done!