BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026426
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 189
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 114/208 (54%), Gaps = 21/208 (10%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFV 64
++++ V++GT +LA+H GNF + Q L K+P+ ++K TYS + F+++ V
Sbjct: 3 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 62
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYN 124
+L + D+ RS F FL VK F+ YG+ Q ++ Y
Sbjct: 63 YLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQT--------------------ALPYA 102
Query: 125 LDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDK 184
++ EF L +++ S + + K+ + +AQ+ E+KGIM+ NI+ V RGER+ELL+DK
Sbjct: 103 MNSEFSSVLAAQLKH-HSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDK 161
Query: 185 TENLQFQADSFQRQGRQLRRRMWLQNLQ 212
TENL + +F+ R L R M ++N++
Sbjct: 162 TENLVDSSVTFKTTSRNLARAMCMKNIK 189
>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
pdb|4AFI|B Chain B, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
Length = 173
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFV 64
++++ V++GT +LA+H GNF + Q L K+P+ ++K TYS + F+++ V
Sbjct: 55 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 114
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQN 99
+L + D+ RS F FL VK F+ YG+ Q
Sbjct: 115 YLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQT 149
>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|B Chain B, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|C Chain C, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|D Chain D, Vamp7 Longin Domain Hrb Peptide Complex
Length = 169
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFV 64
++++ V++GT +LA+H GNF + Q L K+P+ ++K TYS + F+++ V
Sbjct: 45 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 104
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQN 99
+L + D+ RS F FL VK F+ YG+ Q
Sbjct: 105 YLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQT 139
>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin-
Like Protein 1
Length = 131
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFV 64
++++ V++GT +LA+H GNF + Q L K+P+ ++K TYS + F+++ V
Sbjct: 9 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 68
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPL 105
+L + D+ RS F FL +K F+ YG+ Q + +
Sbjct: 69 YLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAPPYAM 109
>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|E Chain E, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|I Chain I, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 61
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMW 207
S+ ++L+A+I + GIM DNI KV +RGER+ + DK +NL A F+R ++R+ MW
Sbjct: 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61
>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex
Length = 74
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%)
Query: 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWL 208
K+ ++ Q+ EV +M +NI KV++RGER++ L DK+E+L A +F + +QLRR+MW
Sbjct: 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 68
Query: 209 QNLQMK 214
+ ++K
Sbjct: 69 RGCKIK 74
>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 91
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 45/70 (64%)
Query: 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRM 206
M +L + +AQ+ EV IM N++KVL+R +++ L D+ + LQ A F+ +L+R+
Sbjct: 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63
Query: 207 WLQNLQMKLM 216
W +NL+M ++
Sbjct: 64 WWKNLKMMII 73
>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure
Length = 119
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 44/68 (64%)
Query: 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWL 208
+L + +AQ+ EV IM N++KVL+R +++ L D+ + LQ A F+ +L+R+ W
Sbjct: 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 93
Query: 209 QNLQMKLM 216
+NL+M ++
Sbjct: 94 KNLKMMII 101
>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
Length = 96
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%)
Query: 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWL 208
+L + +AQ+ EV IM N++KVL+R +++ L D+ + LQ A F+ +L+R+ W
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 209 QNLQM 213
+NL+M
Sbjct: 91 KNLKM 95
>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 80
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWL 208
+L + +AQ+ EV IM N++KVL+R +I L D+ + LQ A F+ +L+R+ W
Sbjct: 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWW 75
Query: 209 QNLQM 213
+N +M
Sbjct: 76 KNCKM 80
>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion
Activity Of Longin Domain Snare Ykt6
Length = 199
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 66 LVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNL 125
+V+AD V F LE+V D+F ++ I P R+
Sbjct: 79 VVIADSEYPSRVAFTLLEKVLDEFSKQVD-RIDWPVGSPATIHYTALDGHLSRYQ----- 132
Query: 126 DREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKT 185
+P E +SK++A++ E K I+ + +E +L+RGE+++ LV K+
Sbjct: 133 -----------------NPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKS 175
Query: 186 ENLQFQADSFQRQGRQ 201
E L Q+ +F + R+
Sbjct: 176 EVLGTQSKAFYKTARK 191
>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 196
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 28 FSTIAIQCLQKL-PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVK 86
+ + A Q +KL S ++ T TF+++++ G +LV+ + + + + F +LE +
Sbjct: 34 YQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLH 93
Query: 87 DDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQ-YCMSHPE 145
+F +++G + S P + EF +++ + Y S
Sbjct: 94 SEFDEQHGKKVPTV-SRPYSFI-------------------EFDTFIQKTKKLYIDSRAR 133
Query: 146 EMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRR 205
L + ++ +V+ IM+ NIE+VL RGE + L K NL + +++ + L R
Sbjct: 134 R--NLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMR 191
>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWL 208
+L + +AQ+ EV IM N++KVL+R +++ L D+ + LQ A F+ +L+R+ W
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 64
Query: 209 QN 210
+N
Sbjct: 65 KN 66
>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 63
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMW 207
+L + +AQ+ EV IM N++KVL+R +++ L D+ + LQ A F+ +L+R+ W
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63
>pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 38/56 (67%)
Query: 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRR 204
++ L++++ VK IM N+E++L RGE ++ L +KTE+L+ ++ F+ +++ R
Sbjct: 10 RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65
>pdb|3EGD|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 157
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 42 SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASI 97
S ++ T TF+++++ G +LV+ + + + + F +LE + +F +++G +
Sbjct: 48 SPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKV 103
>pdb|1IFQ|A Chain A, Sec22b N-Terminal Domain
pdb|1IFQ|B Chain B, Sec22b N-Terminal Domain
Length = 138
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 42 SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASI 97
S ++ T TF+++++ G +LV+ + + + + F +LE + +F +++G +
Sbjct: 59 SPTRCTLEAGAXTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKV 114
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERI 178
M ++ L++++ VK IM N+E++L RGE +
Sbjct: 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310
>pdb|1ITQ|A Chain A, Human Renal Dipeptidase
pdb|1ITQ|B Chain B, Human Renal Dipeptidase
pdb|1ITU|A Chain A, Human Renal Dipeptidase Complexed With Cilastatin
pdb|1ITU|B Chain B, Human Renal Dipeptidase Complexed With Cilastatin
Length = 369
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%)
Query: 120 SIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIE 179
++ + D + PR+ E ++ +P+ +++L + EVKG + DN+ +V + E+
Sbjct: 282 AVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQAS 341
Query: 180 LLVDKTE 186
L E
Sbjct: 342 NLTQAPE 348
>pdb|3RK2|A Chain A, Truncated Snare Complex
pdb|3RK2|E Chain E, Truncated Snare Complex
pdb|3RK3|A Chain A, Truncated Snare Complex With Complexin
pdb|3RL0|A Chain A, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|E Chain E, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|I Chain I, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|M Chain M, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Q Chain Q, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|U Chain U, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Y Chain Y, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|CC Chain c, Truncated Snare Complex With Complexin (P1)
Length = 37
Score = 28.9 bits (63), Expect = 2.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERI 178
+L + +AQ+ EV IM N++KVL+R +++
Sbjct: 8 RLQQTQAQVDEVVDIMRVNVDKVLERDQKL 37
>pdb|1YJE|A Chain A, Crystal Structure Of The Rngfi-B Ligand-Binding Domain
Length = 264
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 133 LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
LKEHM P+ S LS+L ++ E++ + ++++
Sbjct: 201 LKEHMAAVAGDPQPASCLSRLLGKLPELRTLCTQGLQRI 239
>pdb|3MER|A Chain A, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|3MER|B Chain B, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|2KW5|A Chain A, Solution Nmr Structure Of The Slr1183 Protein From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
Length = 202
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 129 FGPRLKEHMQYCMSHPEEM---SKLSKLKAQITEVKGIMMDNIEKVLDRG 175
F P E +QY P+++ KL L++++ + ++ +N+E+ LD G
Sbjct: 132 FAP---EQLQYNTGGPKDLDLLPKLETLQSELPSLNWLIANNLERNLDEG 178
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 122 AYNLDRE-FGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIEL 180
AY +RE FG +LKEH K++ + +I + ++++ K DRGER L
Sbjct: 256 AYAEEREQFGKKLKEHQAIAF-------KIADMHVKIAAARALVLEAARKK-DRGERFTL 307
>pdb|3FIE|C Chain C, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
pdb|3FIE|D Chain D, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
Length = 38
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 149 KLSKLKAQITEVKGIMMDNIEKVLDR 174
+L + +AQ+ EV IM N++KVL+R
Sbjct: 10 RLQQTQAQVDEVVDIMRVNVDKVLER 35
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 132 RLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENL 188
R+ +Q + PE++ ++ K +A GI+++ ++K++D G ++ L ++L
Sbjct: 255 RMAMGVQINIDDPEQLEQIRKREA------GIVLERVKKIIDAGAQVVLTTKGIDDL 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,970,291
Number of Sequences: 62578
Number of extensions: 207713
Number of successful extensions: 704
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 33
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)