Query 026426
Match_columns 238
No_of_seqs 155 out of 976
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 7.4E-65 1.6E-69 409.9 18.3 214 4-238 1-215 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 5.7E-32 1.2E-36 223.0 21.2 192 5-216 1-202 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 1.4E-28 3.1E-33 195.5 14.9 150 30-204 42-193 (198)
4 PF00957 Synaptobrevin: Synapt 99.9 3.6E-27 7.9E-32 173.1 12.1 88 147-234 2-89 (89)
5 KOG0860 Synaptobrevin/VAMP-lik 99.9 1E-26 2.3E-31 174.3 12.0 87 147-233 28-114 (116)
6 COG5143 SNC1 Synaptobrevin/VAM 99.9 1.7E-20 3.7E-25 152.9 14.2 181 6-209 3-190 (190)
7 PF13774 Longin: Regulated-SNA 99.7 1.4E-16 3E-21 115.2 9.2 74 31-104 1-76 (83)
8 COG5143 SNC1 Synaptobrevin/VAM 97.6 0.00023 4.9E-09 58.7 7.3 82 149-230 95-176 (190)
9 PF00957 Synaptobrevin: Synapt 96.5 0.072 1.6E-06 38.5 11.0 78 148-229 10-87 (89)
10 PF03908 Sec20: Sec20; InterP 96.3 0.14 3E-06 37.4 11.6 75 152-229 5-89 (92)
11 KOG0811 SNARE protein PEP12/VA 96.0 0.065 1.4E-06 46.9 9.9 45 148-192 180-224 (269)
12 KOG0810 SNARE protein Syntaxin 95.6 0.11 2.4E-06 46.2 9.5 71 148-220 206-279 (297)
13 COG5074 t-SNARE complex subuni 94.0 0.47 1E-05 40.5 8.8 42 149-190 186-227 (280)
14 PF03908 Sec20: Sec20; InterP 93.9 1.8 3.8E-05 31.5 11.2 38 149-186 9-46 (92)
15 PF04086 SRP-alpha_N: Signal r 92.7 0.2 4.3E-06 43.9 5.0 66 29-96 5-72 (279)
16 PF09753 Use1: Membrane fusion 92.3 1.8 4E-05 37.4 10.4 46 181-228 197-245 (251)
17 KOG0781 Signal recognition par 91.7 0.54 1.2E-05 44.4 6.6 86 7-94 4-95 (587)
18 PF01217 Clat_adaptor_s: Clath 91.6 5.4 0.00012 31.0 12.7 88 5-94 1-96 (141)
19 KOG0860 Synaptobrevin/VAMP-lik 91.1 5.6 0.00012 30.3 10.5 28 167-197 58-85 (116)
20 PF10779 XhlA: Haemolysin XhlA 85.7 9.4 0.0002 26.3 9.2 51 175-228 19-69 (71)
21 PF06789 UPF0258: Uncharacteri 85.6 0.46 1E-05 37.8 1.5 35 196-233 121-155 (159)
22 KOG3385 V-SNARE [Intracellular 85.1 4.7 0.0001 30.7 6.6 76 148-228 36-115 (118)
23 KOG3202 SNARE protein TLG1/Syn 81.9 21 0.00044 30.8 10.2 12 171-182 175-186 (235)
24 COG5074 t-SNARE complex subuni 81.0 8.8 0.00019 33.0 7.4 19 147-165 187-205 (280)
25 KOG0938 Adaptor complexes medi 79.5 24 0.00051 32.1 9.9 88 3-94 3-93 (446)
26 PF04099 Sybindin: Sybindin-li 79.4 19 0.00042 28.3 8.7 59 33-92 46-114 (142)
27 PRK10884 SH3 domain-containing 79.1 38 0.00081 28.5 12.1 24 174-197 130-153 (206)
28 PTZ00478 Sec superfamily; Prov 78.6 8.5 0.00018 27.5 5.6 57 172-228 10-66 (81)
29 COG5325 t-SNARE complex subuni 77.3 30 0.00066 30.4 9.8 45 148-192 195-239 (283)
30 KOG1983 Tomosyn and related SN 77.2 2.1 4.5E-05 44.3 3.1 44 164-207 943-986 (993)
31 TIGR01149 mtrG N5-methyltetrah 77.1 20 0.00043 24.8 6.9 27 177-205 20-46 (70)
32 PRK09400 secE preprotein trans 77.0 11 0.00025 25.3 5.7 50 180-229 5-54 (61)
33 PF09426 Nyv1_N: Vacuolar R-SN 74.5 5.5 0.00012 31.1 4.1 43 45-87 64-110 (141)
34 PRK01026 tetrahydromethanopter 73.7 24 0.00051 24.9 6.7 15 191-205 35-49 (77)
35 PF11166 DUF2951: Protein of u 72.7 35 0.00076 25.1 9.3 22 149-170 29-50 (98)
36 KOG0810 SNARE protein Syntaxin 72.6 16 0.00035 32.5 7.2 39 191-229 245-285 (297)
37 PF03904 DUF334: Domain of unk 72.3 62 0.0013 27.7 11.4 21 215-235 153-173 (230)
38 KOG0812 SNARE protein SED5/Syn 71.5 62 0.0013 28.8 10.2 40 148-187 227-266 (311)
39 PF07798 DUF1640: Protein of u 71.4 54 0.0012 26.7 11.4 25 148-172 80-104 (177)
40 PF09753 Use1: Membrane fusion 70.7 42 0.00091 28.9 9.3 13 185-197 208-220 (251)
41 PF13800 Sigma_reg_N: Sigma fa 70.7 8.9 0.00019 27.9 4.4 12 200-211 6-17 (96)
42 cd07912 Tweety_N N-terminal do 70.1 78 0.0017 29.7 11.4 41 126-169 104-144 (418)
43 PF04799 Fzo_mitofusin: fzo-li 69.8 37 0.00081 27.8 8.1 51 148-198 109-159 (171)
44 PF06008 Laminin_I: Laminin Do 69.6 41 0.00089 29.1 9.0 55 131-191 181-235 (264)
45 KOG0809 SNARE protein TLG2/Syn 68.0 18 0.0004 32.0 6.4 42 148-189 218-259 (305)
46 KOG1690 emp24/gp25L/p24 family 66.5 21 0.00045 29.9 6.0 17 193-209 170-187 (215)
47 PF13800 Sigma_reg_N: Sigma fa 66.2 12 0.00026 27.2 4.3 21 200-220 3-23 (96)
48 KOG1666 V-SNARE [Intracellular 63.3 94 0.002 26.4 11.2 18 149-166 129-146 (220)
49 PF04210 MtrG: Tetrahydrometha 63.2 47 0.001 23.0 7.6 28 176-205 19-46 (70)
50 PF01601 Corona_S2: Coronaviru 62.7 2.7 5.8E-05 40.7 0.2 15 126-140 479-493 (610)
51 KOG2678 Predicted membrane pro 61.9 49 0.0011 28.3 7.5 16 184-199 195-210 (244)
52 PF07204 Orthoreo_P10: Orthore 60.9 5.6 0.00012 29.2 1.6 24 210-233 40-63 (98)
53 KOG3208 SNARE protein GS28 [In 60.9 1E+02 0.0022 26.3 9.3 19 212-230 209-229 (231)
54 KOG0859 Synaptobrevin/VAMP-lik 60.6 31 0.00067 28.9 6.0 78 155-232 125-206 (217)
55 TIGR00327 secE_euk_arch protei 59.3 33 0.00072 23.1 5.0 44 186-229 7-50 (61)
56 PF05739 SNARE: SNARE domain; 58.6 48 0.001 21.6 8.5 44 148-191 4-47 (63)
57 KOG2678 Predicted membrane pro 58.1 60 0.0013 27.8 7.4 21 189-209 193-213 (244)
58 COG4064 MtrG Tetrahydromethano 57.9 60 0.0013 22.5 6.3 27 177-205 23-49 (75)
59 PF12352 V-SNARE_C: Snare regi 55.8 58 0.0013 21.6 8.3 48 147-194 7-54 (66)
60 PF04906 Tweety: Tweety; Inte 55.0 1.3E+02 0.0029 27.9 10.0 10 152-161 107-116 (406)
61 PF08006 DUF1700: Protein of u 54.6 91 0.002 25.2 8.0 7 81-87 6-12 (181)
62 PF06072 Herpes_US9: Alphaherp 53.6 41 0.00089 22.5 4.6 9 189-197 8-16 (60)
63 KOG0811 SNARE protein PEP12/VA 53.4 1.5E+02 0.0033 26.1 9.5 16 193-208 222-237 (269)
64 PF00482 T2SF: Type II secreti 51.1 33 0.00072 24.7 4.5 18 207-224 100-117 (124)
65 TIGR01478 STEVOR variant surfa 50.9 16 0.00035 32.2 3.1 19 213-231 265-283 (295)
66 PF14992 TMCO5: TMCO5 family 50.6 1.8E+02 0.0039 25.8 11.7 23 200-222 207-229 (280)
67 PF11337 DUF3139: Protein of u 49.0 18 0.00039 25.8 2.6 6 227-232 21-26 (85)
68 PTZ00370 STEVOR; Provisional 49.0 18 0.00039 32.0 3.1 18 214-231 262-279 (296)
69 PF02439 Adeno_E3_CR2: Adenovi 48.6 26 0.00057 21.3 2.8 14 215-228 7-20 (38)
70 KOG1326 Membrane-associated pr 46.9 26 0.00056 36.1 4.2 32 198-229 1057-1088(1105)
71 KOG3894 SNARE protein Syntaxin 46.6 1.6E+02 0.0035 26.4 8.6 34 148-184 232-268 (316)
72 PF01099 Uteroglobin: Uteroglo 44.9 40 0.00086 22.8 3.7 44 131-174 17-60 (67)
73 PF05478 Prominin: Prominin; 44.5 2.4E+02 0.0052 28.7 10.7 11 226-236 430-440 (806)
74 PF15339 Afaf: Acrosome format 44.2 35 0.00075 28.0 3.8 24 211-234 128-152 (200)
75 smart00397 t_SNARE Helical reg 43.7 86 0.0019 20.1 6.6 45 148-192 12-56 (66)
76 PF14575 EphA2_TM: Ephrin type 43.5 33 0.00071 24.0 3.2 19 216-234 6-24 (75)
77 PHA03240 envelope glycoprotein 43.5 23 0.00049 30.1 2.7 6 16-21 73-78 (258)
78 KOG3385 V-SNARE [Intracellular 43.1 1.5E+02 0.0033 22.7 6.9 19 212-230 95-114 (118)
79 PF01102 Glycophorin_A: Glycop 43.1 30 0.00065 26.7 3.2 15 214-228 67-81 (122)
80 PF03164 Mon1: Trafficking pro 42.6 2E+02 0.0043 26.8 9.1 87 7-93 13-103 (415)
81 smart00096 UTG Uteroglobin. 42.2 60 0.0013 22.5 4.2 41 133-173 21-61 (69)
82 KOG3498 Preprotein translocase 41.4 1E+02 0.0022 21.0 5.1 38 179-216 5-42 (67)
83 cd00193 t_SNARE Soluble NSF (N 41.2 90 0.002 19.6 6.7 44 148-191 6-49 (60)
84 PF04888 SseC: Secretion syste 41.1 1.8E+02 0.004 25.5 8.4 20 167-186 31-50 (306)
85 PF03904 DUF334: Domain of unk 40.3 2.4E+02 0.0052 24.2 8.6 13 148-160 97-109 (230)
86 KOG1666 V-SNARE [Intracellular 40.3 2.3E+02 0.005 24.1 10.8 50 148-203 135-187 (220)
87 PF12751 Vac7: Vacuolar segreg 39.7 30 0.00065 31.9 3.1 26 203-228 294-319 (387)
88 PF03302 VSP: Giardia variant- 39.7 17 0.00037 33.6 1.7 13 223-235 383-395 (397)
89 cd00633 Secretoglobin Secretog 39.7 68 0.0015 21.6 4.3 43 131-173 17-59 (67)
90 PRK10600 nitrate/nitrite senso 39.3 2.4E+02 0.0051 27.0 9.5 16 157-172 70-85 (569)
91 PF04510 DUF577: Family of unk 38.7 1E+02 0.0022 25.3 5.8 45 156-210 127-171 (174)
92 PF00558 Vpu: Vpu protein; In 38.4 38 0.00082 24.2 2.9 20 213-232 6-25 (81)
93 PRK13664 hypothetical protein; 37.6 59 0.0013 21.6 3.4 14 206-219 2-15 (62)
94 PF02038 ATP1G1_PLM_MAT8: ATP1 37.5 70 0.0015 20.7 3.7 17 208-224 11-28 (50)
95 PF04628 Sedlin_N: Sedlin, N-t 36.6 1.3E+02 0.0028 23.1 6.0 84 10-93 1-106 (132)
96 PF06837 Fijivirus_P9-2: Fijiv 36.5 55 0.0012 27.2 3.9 37 153-189 21-59 (214)
97 COG5325 t-SNARE complex subuni 35.2 3.2E+02 0.0069 24.2 8.6 42 186-229 237-278 (283)
98 PF13124 DUF3963: Protein of u 34.5 84 0.0018 18.9 3.4 16 205-220 17-32 (40)
99 KOG3369 Transport protein part 33.4 2.8E+02 0.006 22.9 8.5 46 44-91 122-168 (199)
100 PF11675 DUF3271: Protein of u 33.3 1.7E+02 0.0037 25.3 6.4 56 2-60 27-82 (249)
101 PHA02673 ORF109 EEV glycoprote 33.3 1.2E+02 0.0026 24.5 5.2 15 200-214 21-35 (161)
102 PHA02650 hypothetical protein; 33.2 53 0.0012 23.3 2.8 10 213-222 52-61 (81)
103 KOG3637 Vitronectin receptor, 33.0 40 0.00087 35.3 3.2 22 216-237 985-1006(1030)
104 PF00664 ABC_membrane: ABC tra 33.0 2.6E+02 0.0056 22.4 11.7 26 149-174 164-189 (275)
105 KOG4782 Predicted membrane pro 32.8 1.1E+02 0.0024 22.4 4.5 34 187-220 29-66 (108)
106 COG4327 Predicted membrane pro 32.7 78 0.0017 23.3 3.7 33 198-230 5-37 (101)
107 PHA02844 putative transmembran 32.7 58 0.0013 22.8 2.9 12 214-225 52-63 (75)
108 PRK10573 type IV pilin biogene 32.4 2.6E+02 0.0057 25.5 8.2 18 214-231 373-390 (399)
109 COG3524 KpsE Capsule polysacch 31.9 92 0.002 28.1 4.8 17 148-164 230-246 (372)
110 PF13172 PepSY_TM_1: PepSY-ass 31.5 1.1E+02 0.0023 17.6 3.8 16 204-219 2-17 (34)
111 cd01617 DCX Ubiquitin-like dom 31.1 84 0.0018 22.0 3.7 50 24-73 24-78 (80)
112 TIGR02120 GspF general secreti 31.0 2.9E+02 0.0063 25.2 8.3 17 215-231 375-391 (399)
113 PF14914 LRRC37AB_C: LRRC37A/B 30.8 44 0.00096 26.6 2.4 12 211-222 119-130 (154)
114 PF13908 Shisa: Wnt and FGF in 30.5 22 0.00048 28.8 0.7 18 216-233 80-97 (179)
115 PF12420 DUF3671: Protein of u 30.2 2.1E+02 0.0044 21.3 5.9 18 205-222 39-56 (104)
116 PF13937 DUF4212: Domain of un 29.8 1.3E+02 0.0029 21.4 4.5 23 203-225 3-25 (81)
117 PF12575 DUF3753: Protein of u 28.5 71 0.0015 22.3 2.8 9 157-165 24-32 (72)
118 PF14712 Snapin_Pallidin: Snap 28.5 1.9E+02 0.0041 20.4 5.3 27 175-201 63-89 (92)
119 PF13706 PepSY_TM_3: PepSY-ass 28.4 96 0.0021 18.4 3.1 14 206-219 3-16 (37)
120 PF08999 SP_C-Propep: Surfacta 28.0 98 0.0021 22.1 3.5 20 210-229 32-51 (93)
121 PF08372 PRT_C: Plant phosphor 28.0 2.8E+02 0.006 22.3 6.6 7 202-208 85-91 (156)
122 KOG2662 Magnesium transporters 27.6 1.7E+02 0.0037 27.3 6.0 25 210-234 383-407 (414)
123 PF06422 PDR_CDR: CDR ABC tran 27.6 71 0.0015 23.6 3.0 33 193-225 34-66 (103)
124 PRK15348 type III secretion sy 27.5 1.1E+02 0.0024 26.6 4.5 27 199-225 209-235 (249)
125 PF14004 DUF4227: Protein of u 27.5 1E+02 0.0022 21.5 3.5 24 205-228 1-24 (71)
126 PF10661 EssA: WXG100 protein 27.5 28 0.00062 27.6 0.8 17 220-236 120-136 (145)
127 PHA03011 hypothetical protein; 27.3 2.4E+02 0.0051 21.1 5.5 53 132-187 65-117 (120)
128 PF00517 GP41: Retroviral enve 27.1 2.4E+02 0.0051 23.6 6.4 11 205-215 151-161 (204)
129 KOG4433 Tweety transmembrane/c 27.1 3.7E+02 0.0081 25.8 8.1 16 209-224 211-226 (526)
130 PHA02557 22 prohead core prote 26.7 1.6E+02 0.0034 25.9 5.2 94 78-191 89-190 (271)
131 KOG2740 Clathrin-associated pr 26.4 1.7E+02 0.0036 27.0 5.5 36 59-94 61-96 (418)
132 KOG3287 Membrane trafficking p 26.2 4.2E+02 0.009 22.7 8.3 54 166-219 153-211 (236)
133 COG5547 Small integral membran 26.2 87 0.0019 20.9 2.8 14 207-220 3-16 (62)
134 PRK10884 SH3 domain-containing 26.1 3.9E+02 0.0086 22.4 11.0 12 181-192 144-155 (206)
135 PHA02975 hypothetical protein; 25.8 87 0.0019 21.6 2.8 8 217-224 51-58 (69)
136 PRK10381 LPS O-antigen length 25.6 94 0.002 28.6 4.0 17 205-221 34-50 (377)
137 PF06825 HSBP1: Heat shock fac 25.4 1.5E+02 0.0033 19.4 3.9 41 149-192 11-51 (54)
138 PHA03054 IMV membrane protein; 25.3 92 0.002 21.6 2.9 13 212-224 50-62 (72)
139 KOG0862 Synaptobrevin/VAMP-lik 25.3 4.3E+02 0.0092 22.5 9.3 66 148-215 118-194 (216)
140 PF03607 DCX: Doublecortin; I 24.9 98 0.0021 20.4 3.0 48 25-72 8-58 (60)
141 PF10039 DUF2275: Predicted in 24.8 1E+02 0.0022 26.2 3.7 29 200-229 23-51 (218)
142 PF05393 Hum_adeno_E3A: Human 24.7 58 0.0013 23.7 1.9 7 227-233 48-54 (94)
143 PF04906 Tweety: Tweety; Inte 24.7 5.7E+02 0.012 23.7 9.6 8 230-237 205-212 (406)
144 PF07792 Afi1: Docking domain 24.6 2.9E+02 0.0063 21.8 6.1 51 5-61 1-59 (145)
145 PHA02819 hypothetical protein; 24.6 1E+02 0.0022 21.4 3.0 9 214-222 50-58 (71)
146 PF09813 Coiled-coil_56: Coile 24.6 2.9E+02 0.0062 20.5 5.6 11 209-219 50-60 (100)
147 PRK15041 methyl-accepting chem 24.5 6.3E+02 0.014 24.2 12.9 12 150-161 122-133 (554)
148 COG5415 Predicted integral mem 24.5 4E+02 0.0087 22.7 7.1 18 175-192 14-31 (251)
149 PF10392 COG5: Golgi transport 24.3 3.3E+02 0.0071 20.8 7.9 58 148-205 33-94 (132)
150 PF06695 Sm_multidrug_ex: Puta 24.3 3.1E+02 0.0066 20.8 6.0 21 195-217 58-78 (121)
151 PTZ00382 Variant-specific surf 23.7 40 0.00086 24.8 0.9 13 223-235 82-94 (96)
152 KOG3251 Golgi SNAP receptor co 23.6 4.6E+02 0.0099 22.3 10.1 29 168-196 138-167 (213)
153 COG4499 Predicted membrane pro 23.4 1.1E+02 0.0024 28.4 3.9 29 31-59 40-69 (434)
154 PF04999 FtsL: Cell division p 23.3 1.9E+02 0.004 20.7 4.5 24 206-229 9-32 (97)
155 PHA03386 P10 fibrous body prot 23.1 2E+02 0.0043 21.1 4.4 36 148-187 19-54 (94)
156 COG1969 HyaC Ni,Fe-hydrogenase 22.9 64 0.0014 27.2 2.1 37 200-236 96-150 (227)
157 PF04799 Fzo_mitofusin: fzo-li 22.6 4.3E+02 0.0094 21.6 7.2 50 148-197 116-165 (171)
158 PRK10299 PhoPQ regulatory prot 22.6 66 0.0014 20.4 1.6 24 210-233 3-28 (47)
159 KOG3065 SNAP-25 (synaptosome-a 22.6 3.3E+02 0.0071 24.0 6.6 46 149-194 219-264 (273)
160 PF11026 DUF2721: Protein of u 22.0 3.7E+02 0.008 20.6 8.4 17 198-214 51-67 (130)
161 PF10168 Nup88: Nuclear pore c 21.9 7.2E+02 0.016 25.1 9.6 18 162-179 596-613 (717)
162 PF05545 FixQ: Cbb3-type cytoc 21.4 2.1E+02 0.0045 17.9 3.9 19 212-230 11-29 (49)
163 PRK11466 hybrid sensory histid 21.3 8.6E+02 0.019 24.6 12.6 6 224-229 344-349 (914)
164 PF05659 RPW8: Arabidopsis bro 21.1 2.5E+02 0.0055 22.1 5.2 31 148-178 51-81 (147)
165 PLN03223 Polycystin cation cha 21.1 1.9E+02 0.0041 31.4 5.4 43 147-189 1580-1622(1634)
166 TIGR03545 conserved hypothetic 20.8 4E+02 0.0086 26.0 7.3 51 147-197 190-240 (555)
167 PF11190 DUF2976: Protein of u 20.4 1.2E+02 0.0027 21.9 2.9 25 204-230 56-80 (87)
168 PRK12430 putative bifunctional 20.1 1.7E+02 0.0036 27.0 4.3 33 184-216 109-141 (379)
169 PHA02947 S-S bond formation pa 20.0 89 0.0019 26.5 2.4 19 211-229 177-195 (215)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-65 Score=409.87 Aligned_cols=214 Identities=59% Similarity=1.044 Sum_probs=206.6
Q ss_pred ccEEEEEEEcCCeEEEeecCCCCCHHHHHHHHHhcCCCC-CCceEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHH
Q 026426 4 KGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPAS-SSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFL 82 (238)
Q Consensus 4 ~~i~Ya~Iar~~~iLaey~~~~~~~~~~a~~il~k~~~~-~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL 82 (238)
|+|+|++||||++|||||++.+|||.++|.+||+|+|++ ++|.+|++|+|+|||+.+||++|+|++|++.++++||.||
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL 80 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL 80 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence 579999999999999999999999999999999999998 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhccCCchhhhHHHHHHHHHHHhHh
Q 026426 83 ERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKG 162 (238)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~ 162 (238)
++|++.|.+.||....++..+++ +.+|++.|++.|++|.++|+ .|++.+++.+++|+++
T Consensus 81 e~Ik~~F~k~YG~~a~ta~Aysm--------------------N~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~ 139 (217)
T KOG0859|consen 81 ERIKEDFKKRYGGGAHTAVAYSM--------------------NKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKG 139 (217)
T ss_pred HHHHHHHHHHhccchhHHHHhHh--------------------HHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHH
Confidence 99999999999887777666665 99999999999999998888 6999999999999999
Q ss_pred hhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026426 163 IMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWLVACGGFKC 238 (238)
Q Consensus 163 im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI~~~~c~gf~c 238 (238)
+|.+|||++++|||+||.|++||++|+.++..|++++++++|+|||+|.|+++++++++++++++||+.+||||+|
T Consensus 140 vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~ 215 (217)
T KOG0859|consen 140 VMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTC 215 (217)
T ss_pred HHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-32 Score=222.98 Aligned_cols=192 Identities=24% Similarity=0.478 Sum_probs=171.5
Q ss_pred cEEEEEEEc--CCeEEEeecC---CCCC----HHHHHHHHHhcCCCC-CCceEEEECCeEEEEEeeCCEEEEEEecCCCC
Q 026426 5 GLIYSFVSK--GTVVLAEHTS---YSGN----FSTIAIQCLQKLPAS-SSKYTYSCDGHTFNFLLDSGFVFLVVADESVG 74 (238)
Q Consensus 5 ~i~Ya~Iar--~~~iLaey~~---~~~~----~~~~a~~il~k~~~~-~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~ 74 (238)
||++++|+| ++.|||.-.+ .+++ +++.++.+++++.+. +++.|.+.|.+.|||++++|++|+|+||.+||
T Consensus 1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP 80 (216)
T KOG0862|consen 1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP 80 (216)
T ss_pred CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence 689999999 6899986543 2333 356889999999887 88999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhccCCchhhhHHHHHH
Q 026426 75 RSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLK 154 (238)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~p~~~dkl~~i~ 154 (238)
+.+||.||+++.++|...|+....+...+|++ +.+|++.|++..+.| +|++..+.+.++.
T Consensus 81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~-------------------FieFD~~IQk~Kk~y-nd~r~~~n~~~~n 140 (216)
T KOG0862|consen 81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYA-------------------FIEFDTFIQKTKKRY-NDTRSQRNLLKLN 140 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccCCCee-------------------EEehhHHHHHHHHHh-cCcHHHHHHHHHH
Confidence 99999999999999999998777665556664 789999999999999 4777679999999
Q ss_pred HHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 026426 155 AQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLM 216 (238)
Q Consensus 155 ~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~ii 216 (238)
+++.+|+.+|.+|++.++.|||.|+.+...+.+|+..|+.++++|+.++++..|.+|.-++.
T Consensus 141 ~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~ 202 (216)
T KOG0862|consen 141 QELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVV 202 (216)
T ss_pred HHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999884433
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-28 Score=195.54 Aligned_cols=150 Identities=23% Similarity=0.398 Sum_probs=133.2
Q ss_pred HHHHHHHhcCCCCCCceEEEECCeEEEEEee-CCEEEEEEecCCCCcccHHHHHHHHHHHHHhhh-ccccccccCCCCCC
Q 026426 30 TIAIQCLQKLPASSSKYTYSCDGHTFNFLLD-SGFVFLVVADESVGRSVPFVFLERVKDDFKQRY-GASIQNEESHPLAD 107 (238)
Q Consensus 30 ~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~-~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~-~~~~~~~~~~~l~~ 107 (238)
-+++.+.++++|+. |++++.+.|.+|.... ||+++++++|.+||.|+||.+|+++.++|.... +.+|+......
T Consensus 42 F~sktvaeRt~~g~-rqsvk~~~Y~~h~yvrndgL~~V~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~~--- 117 (198)
T KOG0861|consen 42 FISKTVAERTGPGQ-RQSVKHEEYLVHVYVRNDGLCGVLIADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETAD--- 117 (198)
T ss_pred HHHHHHHHhcCccc-ccccccceeEEEEEEecCCeeEEEEecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCcC---
Confidence 37899999999987 8999999999997665 599999999999999999999999999996665 56777322221
Q ss_pred CCCCchhhhhhhhhccccccccchhHHHHhhhccCCchhhhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhh
Q 026426 108 DDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTEN 187 (238)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~ 187 (238)
..| |.|..++++| +||.++|++.++|++++|+|.||.++|+.+|+|||+||+|++||++
T Consensus 118 -------------------~~~-~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~ 176 (198)
T KOG0861|consen 118 -------------------LSY-PYLDTLLSKY-QDPAEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSEN 176 (198)
T ss_pred -------------------CCc-hhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHh
Confidence 222 7899999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHH
Q 026426 188 LQFQADSFQRQGRQLRR 204 (238)
Q Consensus 188 L~~~s~~f~~~a~~l~~ 204 (238)
|+.+|+.|+++|+|.++
T Consensus 177 Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 177 LSLQSKMFYKSAKKTNS 193 (198)
T ss_pred hhHHHHHHHHHHhhcCC
Confidence 99999999999998774
No 4
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.95 E-value=3.6e-27 Score=173.09 Aligned_cols=88 Identities=41% Similarity=0.753 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026426 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFII 226 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~ 226 (238)
.|++.++++++++|+++|.+|++++++|||+|+.|+++|++|+..|..|+++|++++|+|||+++|++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhC
Q 026426 227 IVWLVACG 234 (238)
Q Consensus 227 iI~~~~c~ 234 (238)
+|++++||
T Consensus 82 ~i~~~~~g 89 (89)
T PF00957_consen 82 IIIIVICG 89 (89)
T ss_dssp HHHHTT--
T ss_pred HHHHHHhC
Confidence 99999997
No 5
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1e-26 Score=174.35 Aligned_cols=87 Identities=34% Similarity=0.679 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026426 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFII 226 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~ 226 (238)
++++.++|+++++|++||++|++|+||||++|++|+++|+.|...|..|++.|.+++|+|||+|.|+.+++++|++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHhh
Q 026426 227 IVWLVAC 233 (238)
Q Consensus 227 iI~~~~c 233 (238)
+|++++-
T Consensus 108 iiii~~~ 114 (116)
T KOG0860|consen 108 VIIIYIF 114 (116)
T ss_pred HHHHHHh
Confidence 7776653
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.85 E-value=1.7e-20 Score=152.90 Aligned_cols=181 Identities=21% Similarity=0.336 Sum_probs=137.2
Q ss_pred EEEEEEEcC--CeEEEe-ecCCCCCH-H-HHHHHHHhcCCCC-CCceEEEECCeEEEEEee-CCEEEEEEecCCCCcccH
Q 026426 6 LIYSFVSKG--TVVLAE-HTSYSGNF-S-TIAIQCLQKLPAS-SSKYTYSCDGHTFNFLLD-SGFVFLVVADESVGRSVP 78 (238)
Q Consensus 6 i~Ya~Iar~--~~iLae-y~~~~~~~-~-~~a~~il~k~~~~-~~k~s~~~~~~~~~~l~~-~~~~~~~i~d~~~~~~~a 78 (238)
++|..+..| ..+|++ ++..+..| . ..+..+|..+-|. .++.+++.+++.|||+.. +|++|+|+++++||.++|
T Consensus 3 s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~la 82 (190)
T COG5143 3 SISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNKLA 82 (190)
T ss_pred eEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchhhh
Confidence 455555555 244443 22222333 2 3566667766554 346778889999999875 599999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhccCCchhhhHHHHHHHHHH
Q 026426 79 FVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQIT 158 (238)
Q Consensus 79 f~fL~~i~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~p~~~dkl~~i~~~v~ 158 (238)
++.++++..+|......+.......++. ...|++.+++ .| +||...|++.+++.+++
T Consensus 83 ~~~~~~~~~~~~~s~~~~~~~d~~~~~~-------------------~~~~d~~~e~---~y-~d~s~~D~~d~l~~el~ 139 (190)
T COG5143 83 YGYLNSIATEFLKSSALEQLIDDTVGIM-------------------RVNIDKVIEK---GY-RDPSIQDKLDQLQQELE 139 (190)
T ss_pred hHHHHhhccHhhhhhhHhhcccCccchh-------------------hhhHHHHHHh---hc-CCchhhhHHHHHHHHHH
Confidence 9999999998876653322111111220 3445555544 27 68888899999999999
Q ss_pred HhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 026426 159 EVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQ 209 (238)
Q Consensus 159 ~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~ 209 (238)
+++.+|.+|+++++.||++|+.|.++|+.|...|+.|+++|++.+..+||+
T Consensus 140 e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 140 ETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 999999999999999999999999999999999999999999999999994
No 7
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.69 E-value=1.4e-16 Score=115.20 Aligned_cols=74 Identities=31% Similarity=0.654 Sum_probs=65.2
Q ss_pred HHHHHHhcCCCCC-CceEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhc-cccccccCCC
Q 026426 31 IAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYG-ASIQNEESHP 104 (238)
Q Consensus 31 ~a~~il~k~~~~~-~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~-~~~~~~~~~~ 104 (238)
+|+++|+++++.+ .|.+++.+++.|||++++|++|+|+||++||+++||.||++|+++|.++|+ ..+.++.+++
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~ 76 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYS 76 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTT
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcc
Confidence 5889999999665 799999999999999999999999999999999999999999999999997 5666666554
No 8
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.00023 Score=58.72 Aligned_cols=82 Identities=26% Similarity=0.332 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026426 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIV 228 (238)
Q Consensus 149 kl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI 228 (238)
+...++...++++++|..|+++.++||.+...+.++..++...++.|++-+.+...++|||.-|+-.+++....+..-.+
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~ 174 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSK 174 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999999999999999999999999999999999999999999999988888666555444
Q ss_pred HH
Q 026426 229 WL 230 (238)
Q Consensus 229 ~~ 230 (238)
.+
T Consensus 175 ~~ 176 (190)
T COG5143 175 MF 176 (190)
T ss_pred HH
Confidence 43
No 9
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.53 E-value=0.072 Score=38.51 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIII 227 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~i 227 (238)
+.++.++..+.+.-+-+.++-+++-+=.++-+.|.+.|+....+|...++.. +...++-+-+.+++++++++++++
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~----~~~~~k~~~i~~~iv~~~~~~i~~ 85 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM----WWRNYKLYIIIIIIVIIIILIIII 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHhHHhhhhhhhhHHHH
Confidence 4666666666666666666666666667777888889999999997776433 334445666666666655555555
Q ss_pred HH
Q 026426 228 VW 229 (238)
Q Consensus 228 I~ 229 (238)
++
T Consensus 86 ~~ 87 (89)
T PF00957_consen 86 VI 87 (89)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 10
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.34 E-value=0.14 Score=37.38 Aligned_cols=75 Identities=13% Similarity=0.302 Sum_probs=44.5
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHH------h----HHHHHHHHHHHHhHHHHHHHHHH
Q 026426 152 KLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQR------Q----GRQLRRRMWLQNLQMKLMVGGAV 221 (238)
Q Consensus 152 ~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~------~----a~~l~~~~ww~~~k~~iii~~vv 221 (238)
.+.+.+..++..|.+.+++- ...++.|.+.|+.|......|.. . -+++.|+.|.-.+-+++.+.+++
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~ 81 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFL 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35556666666666666543 44555666666666544444332 2 25566777776667777777767
Q ss_pred HHHHHHHH
Q 026426 222 IAFIIIVW 229 (238)
Q Consensus 222 ~~ii~iI~ 229 (238)
++++||+|
T Consensus 82 ~~v~yI~~ 89 (92)
T PF03908_consen 82 LVVLYILW 89 (92)
T ss_pred HHHHHHhh
Confidence 76766665
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.065 Score=46.91 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQA 192 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s 192 (238)
..+.+++.++.||.+|+.+=-..+-+.|+.+|.+++.-++.+.++
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nv 224 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNV 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Confidence 678899999999999999877788899999999998888777555
No 12
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.11 Score=46.22 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHH---HHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQF---QADSFQRQGRQLRRRMWLQNLQMKLMVGGA 220 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~---~s~~f~~~a~~l~~~~ww~~~k~~iii~~v 220 (238)
+.+.++++.+.|++++-.+=--.+-..||.++.++...++-.+ .+..=-++|.+..++. |++|+++|++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka--RK~k~i~ii~~i 279 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA--RKWKIIIIIILI 279 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhceeeeehHHH
Confidence 5677788888888888666566677888888888766554443 3333334555555544 233444444333
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=93.97 E-value=0.47 Score=40.54 Aligned_cols=42 Identities=19% Similarity=0.378 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHH
Q 026426 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQF 190 (238)
Q Consensus 149 kl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~ 190 (238)
.+.++++-+.|+.+...+=-+.+.++.+..|.+....++-..
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~ 227 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQE 227 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHh
Confidence 344555555555555555556778899999888877766553
No 14
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=93.92 E-value=1.8 Score=31.50 Aligned_cols=38 Identities=5% Similarity=0.077 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhh
Q 026426 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTE 186 (238)
Q Consensus 149 kl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~ 186 (238)
.+..+.+.+.+.-+-...|++.+.+--+.|..+.+.=.
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~ 46 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYD 46 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444444444455555555555544444433
No 15
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=92.70 E-value=0.2 Score=43.89 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCCCCCceEEEECCeEEEEEeeC--CEEEEEEecCCCCcccHHHHHHHHHHHHHhhhccc
Q 026426 29 STIAIQCLQKLPASSSKYTYSCDGHTFNFLLDS--GFVFLVVADESVGRSVPFVFLERVKDDFKQRYGAS 96 (238)
Q Consensus 29 ~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~~--~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~ 96 (238)
..+++.+|=.=.. .-.+|++++|+.++...+ +++|++|-..-.....+=.||+.|+..|...|+..
T Consensus 5 n~LI~~vlleeR~--~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~ 72 (279)
T PF04086_consen 5 NALIRDVLLEERS--GNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQ 72 (279)
T ss_dssp HHHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhheeecc--CCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHH
Confidence 3455555533222 235688999999998876 79999999999998889999999999999999654
No 16
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=92.26 E-value=1.8 Score=37.35 Aligned_cols=46 Identities=28% Similarity=0.440 Sum_probs=22.2
Q ss_pred hHHhhhhHHHHHHHHHHhHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHH
Q 026426 181 LVDKTENLQFQADSFQRQGRQLRRR---MWLQNLQMKLMVGGAVIAFIIIV 228 (238)
Q Consensus 181 L~~ks~~L~~~s~~f~~~a~~l~~~---~ww~~~k~~iii~~vv~~ii~iI 228 (238)
|..-.+.+..+...+.+.+.+++.. .|+ +++|+++++|++++++.|
T Consensus 197 L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~mv 245 (251)
T PF09753_consen 197 LDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMMV 245 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555533 233 455555555555444443
No 17
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=0.54 Score=44.41 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=63.9
Q ss_pred EEEEEEcCCeEEEeecCCCCCHH----HHHHHHHhcCCCCCCceEEEECCeEEEEEeeC--CEEEEEEecCCCCcccHHH
Q 026426 7 IYSFVSKGTVVLAEHTSYSGNFS----TIAIQCLQKLPASSSKYTYSCDGHTFNFLLDS--GFVFLVVADESVGRSVPFV 80 (238)
Q Consensus 7 ~Ya~Iar~~~iLaey~~~~~~~~----~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~~--~~~~~~i~d~~~~~~~af~ 80 (238)
.++.+.+|+.||..|.....+|. .+.+.+|-.-..+ --+++.+.|+..|-.++ +++|+|+-.+-.....+-.
T Consensus 4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er~~--~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~~ 81 (587)
T KOG0781|consen 4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSERGG--VNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVDK 81 (587)
T ss_pred eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhhcC--cccCchhheeEeeeecCCccEEEEEEEeccchhhhHHH
Confidence 47788999999999987655554 4555544331221 12377788888877654 7999999999988888999
Q ss_pred HHHHHHHHHHhhhc
Q 026426 81 FLERVKDDFKQRYG 94 (238)
Q Consensus 81 fL~~i~~~f~~~~~ 94 (238)
||+++.+.|...|.
T Consensus 82 ll~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 82 LLNDVLNLFREKYD 95 (587)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988873
No 18
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=91.56 E-value=5.4 Score=31.05 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=60.3
Q ss_pred cEEEEEEEc--CCeEEEeec-CCCCC-----HHHHHHHHHhcCCCCCCceEEEECCeEEEEEeeCCEEEEEEecCCCCcc
Q 026426 5 GLIYSFVSK--GTVVLAEHT-SYSGN-----FSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRS 76 (238)
Q Consensus 5 ~i~Ya~Iar--~~~iLaey~-~~~~~-----~~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~ 76 (238)
||...+|.. |.++++.|= ..+.. ++...+.+..+-+.. --....+++.+-|...+++.++++++.+...-
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel 78 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQ--SPIFEHDNYRIVYKRYSDLYFVVVGDENENEL 78 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSS--TSEEEETTEEEEEEEETTEEEEEEESSTSBHH
T ss_pred CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhccccc--ceeeecccceeeeEeeccEEEEEEeecccchH
Confidence 566666664 567777763 22221 233333334332221 24577889999888889999999999999988
Q ss_pred cHHHHHHHHHHHHHhhhc
Q 026426 77 VPFVFLERVKDDFKQRYG 94 (238)
Q Consensus 77 ~af~fL~~i~~~f~~~~~ 94 (238)
....||+.+.+.+...++
T Consensus 79 ~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 79 LLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhhhhhhc
Confidence 899999999998877664
No 19
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.06 E-value=5.6 Score=30.34 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=18.1
Q ss_pred hHHHHHHhhhHHHHhHHhhhhHHHHHHHHHH
Q 026426 167 NIEKVLDRGERIELLVDKTENLQFQADSFQR 197 (238)
Q Consensus 167 ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~ 197 (238)
.++.+-+| -|.|.+.|+.-...|...++
T Consensus 58 kL~~L~dr---ad~L~~~as~F~~~A~klkr 85 (116)
T KOG0860|consen 58 KLDELDDR---ADQLQAGASQFEKTAVKLKR 85 (116)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44555444 45666777888888877764
No 20
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=85.71 E-value=9.4 Score=26.30 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=23.0
Q ss_pred hhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026426 175 GERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIV 228 (238)
Q Consensus 175 ge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI 228 (238)
.++++.++..++.+.........+-.++.-...| -+.++++++|.+++++|
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3444455555444444444444444444433322 22245555555554444
No 21
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=85.65 E-value=0.46 Score=37.83 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 026426 196 QRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWLVAC 233 (238)
Q Consensus 196 ~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI~~~~c 233 (238)
++.-.+.||.. -.|+..+++++||+++++|++.+|
T Consensus 121 KkKEae~kr~K---~Cki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 121 KKKEAELKRSK---VCKIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHheEEEEEEEE
Confidence 33444555543 346777788888888899998888
No 22
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.13 E-value=4.7 Score=30.74 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHH----hhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVD----KTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIA 223 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~----ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ 223 (238)
..++.++++|.-.|..-.+--+++-....-|+.+.+ -+.-|+..-.+|+.-|+.-.++.| .|++++++|++
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~-----~~m~~f~lV~~ 110 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLL-----CWMAVFSLVAF 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHHH
Confidence 577788888888887754433333333333333322 223333444556555555444333 35555555554
Q ss_pred HHHHH
Q 026426 224 FIIIV 228 (238)
Q Consensus 224 ii~iI 228 (238)
+|+.+
T Consensus 111 fi~~~ 115 (118)
T KOG3385|consen 111 FILWV 115 (118)
T ss_pred HHhhe
Confidence 44433
No 23
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.92 E-value=21 Score=30.80 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=5.2
Q ss_pred HHHhhhHHHHhH
Q 026426 171 VLDRGERIELLV 182 (238)
Q Consensus 171 il~Rge~L~~L~ 182 (238)
+-+.|.-||++.
T Consensus 175 L~~Q~~llDdl~ 186 (235)
T KOG3202|consen 175 LEEQGRLLDDLD 186 (235)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 24
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=80.99 E-value=8.8 Score=32.98 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHhHhhhh
Q 026426 147 MSKLSKLKAQITEVKGIMM 165 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~ 165 (238)
.-|+++.-.++.+.=+-|.
T Consensus 187 ikkiEkt~ael~qLfndm~ 205 (280)
T COG5074 187 IKKIEKTMAELTQLFNDME 205 (280)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566665555555544443
No 25
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.48 E-value=24 Score=32.15 Aligned_cols=88 Identities=15% Similarity=0.279 Sum_probs=60.5
Q ss_pred CccEEEEEEEcCCeEEEee-c-CCCCCHHHHHHH-HHhcCCCCCCceEEEECCeEEEEEeeCCEEEEEEecCCCCcccHH
Q 026426 3 QKGLIYSFVSKGTVVLAEH-T-SYSGNFSTIAIQ-CLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPF 79 (238)
Q Consensus 3 ~~~i~Ya~Iar~~~iLaey-~-~~~~~~~~~a~~-il~k~~~~~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af 79 (238)
.|.+.| =.||.++++.. . +-.++..++-+- ++..+.-. --..+.++-+|||...+++-.++||.........|
T Consensus 3 sglfi~--n~rGevlink~fr~dlkrs~~diFRv~vi~n~d~r--~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~ 78 (446)
T KOG0938|consen 3 SGLFIY--NLRGEVLINKTFRDDLKRSIVDIFRVQVINNLDVR--SPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVF 78 (446)
T ss_pred ceEEEE--eccCcEEEehhhhhhhhhhHHHHHHHhhhhccccC--CCeeEecceeEEEEeeccEEEEEEecCCCchhhHH
Confidence 344444 35888888764 3 334555544332 23222211 13467899999999999998889998888888999
Q ss_pred HHHHHHHHHHHhhhc
Q 026426 80 VFLERVKDDFKQRYG 94 (238)
Q Consensus 80 ~fL~~i~~~f~~~~~ 94 (238)
.||.++-..+..-++
T Consensus 79 eFl~kl~avm~aYfg 93 (446)
T KOG0938|consen 79 EFLYKLDAVMNAYFG 93 (446)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998876665
No 26
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=79.39 E-value=19 Score=28.27 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=37.6
Q ss_pred HHHHhcCCCC---------CCceEEEECCeEEEEEe-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHhh
Q 026426 33 IQCLQKLPAS---------SSKYTYSCDGHTFNFLL-DSGFVFLVVADESVGRSVPFVFLERVKDDFKQR 92 (238)
Q Consensus 33 ~~il~k~~~~---------~~k~s~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~ 92 (238)
+.+..++.|. ..-.+++.+.|..|++- --|+-|+++||+..+. ..-.+++.+.+.|.+.
T Consensus 46 ~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dy 114 (142)
T PF04099_consen 46 KAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDY 114 (142)
T ss_dssp HHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHH
Confidence 3455666661 34567888999999986 4799999999999863 4555666666666543
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.10 E-value=38 Score=28.54 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=11.9
Q ss_pred hhhHHHHhHHhhhhHHHHHHHHHH
Q 026426 174 RGERIELLVDKTENLQFQADSFQR 197 (238)
Q Consensus 174 Rge~L~~L~~ks~~L~~~s~~f~~ 197 (238)
+...+..|.+.-++|..+-..-+.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555544444433
No 28
>PTZ00478 Sec superfamily; Provisional
Probab=78.57 E-value=8.5 Score=27.48 Aligned_cols=57 Identities=5% Similarity=-0.053 Sum_probs=38.5
Q ss_pred HHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026426 172 LDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIV 228 (238)
Q Consensus 172 l~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI 228 (238)
.+..+.++.+.+...+.-..+.+|-+.++|=.|+-+.+-.+...+..+++-++-|+|
T Consensus 10 ~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~I 66 (81)
T PTZ00478 10 TDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYSI 66 (81)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666777777777788888888888888888777777666555444444443
No 29
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=77.33 E-value=30 Score=30.40 Aligned_cols=45 Identities=22% Similarity=0.191 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQA 192 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s 192 (238)
..+.++..-+.|+..|..+==.-+.+.|+-++.+.-.-++.+.++
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~ 239 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNL 239 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHH
Confidence 456677777888888877767778899998888876655555433
No 30
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.17 E-value=2.1 Score=44.35 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=36.7
Q ss_pred hhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHH
Q 026426 164 MMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMW 207 (238)
Q Consensus 164 m~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~w 207 (238)
...-.+.+.+|||+|+.++++|++|++++++|...|.++..++-
T Consensus 943 ~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~ 986 (993)
T KOG1983|consen 943 ASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYK 986 (993)
T ss_pred hhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhh
Confidence 33445788999999999999999999999999998887775443
No 31
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=77.10 E-value=20 Score=24.76 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=15.2
Q ss_pred HHHHhHHhhhhHHHHHHHHHHhHHHHHHH
Q 026426 177 RIELLVDKTENLQFQADSFQRQGRQLRRR 205 (238)
Q Consensus 177 ~L~~L~~ks~~L~~~s~~f~~~a~~l~~~ 205 (238)
+||.+++|-|. .++.-|++..+++-|-
T Consensus 20 rLd~iEeKVEf--~~~E~~Qr~Gkk~GRD 46 (70)
T TIGR01149 20 RLDEIEEKVEF--VNGEVAQRIGKKVGRD 46 (70)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhhhH
Confidence 34444444333 3456677777777765
No 32
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=76.97 E-value=11 Score=25.34 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=32.8
Q ss_pred HhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026426 180 LLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVW 229 (238)
Q Consensus 180 ~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI~ 229 (238)
.+.+...+.-.++.++-+.++|=.|+-.++..+...+..+++-++-|+|-
T Consensus 5 ~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~Ik 54 (61)
T PRK09400 5 KLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIY 54 (61)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556677777777777788888777777766655555555553
No 33
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=74.55 E-value=5.5 Score=31.14 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=31.4
Q ss_pred ceEEEE-CCeEEEEEe---eCCEEEEEEecCCCCcccHHHHHHHHHH
Q 026426 45 KYTYSC-DGHTFNFLL---DSGFVFLVVADESVGRSVPFVFLERVKD 87 (238)
Q Consensus 45 k~s~~~-~~~~~~~l~---~~~~~~~~i~d~~~~~~~af~fL~~i~~ 87 (238)
|.+... +||-.+|.. +++-+++|.+....|+-++...|.+++.
T Consensus 64 K~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 64 KMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp E--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred EEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 344443 899888877 4689999999999999999999999876
No 34
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=73.70 E-value=24 Score=24.94 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=10.5
Q ss_pred HHHHHHHhHHHHHHH
Q 026426 191 QADSFQRQGRQLRRR 205 (238)
Q Consensus 191 ~s~~f~~~a~~l~~~ 205 (238)
+|.-|++..+++-|-
T Consensus 35 n~Ei~Qr~GkkvGRD 49 (77)
T PRK01026 35 NAEIFQRIGKKVGRD 49 (77)
T ss_pred HHHHHHHHhHHhhhH
Confidence 456777777777765
No 35
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=72.67 E-value=35 Score=25.05 Aligned_cols=22 Identities=5% Similarity=0.075 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHhhhhhhHHH
Q 026426 149 KLSKLKAQITEVKGIMMDNIEK 170 (238)
Q Consensus 149 kl~~i~~~v~~v~~im~~ni~~ 170 (238)
.+..-+...++|..-|..++|+
T Consensus 29 ~Ik~gq~~qe~v~~kld~tlD~ 50 (98)
T PF11166_consen 29 EIKDGQHDQELVNQKLDRTLDE 50 (98)
T ss_pred HHHHhHhhHHHHHHHHHhhHHH
Confidence 3333345556666667777776
No 36
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.61 E-value=16 Score=32.53 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=18.6
Q ss_pred HHHHHHHh-HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Q 026426 191 QADSFQRQ-GRQLRRRMWLQNL-QMKLMVGGAVIAFIIIVW 229 (238)
Q Consensus 191 ~s~~f~~~-a~~l~~~~ww~~~-k~~iii~~vv~~ii~iI~ 229 (238)
+|..|-.+ +-.+++....+.- +=|-++++++++++++|+
T Consensus 245 ~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~ 285 (297)
T KOG0810|consen 245 NAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVL 285 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHH
Confidence 44445443 3555555433333 444455555555554444
No 37
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=72.27 E-value=62 Score=27.69 Aligned_cols=21 Identities=0% Similarity=-0.064 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCC
Q 026426 215 LMVGGAVIAFIIIVWLVACGG 235 (238)
Q Consensus 215 iii~~vv~~ii~iI~~~~c~g 235 (238)
.+.+..+++++|+.++.+-|+
T Consensus 153 gi~aml~Vf~LF~lvmt~g~d 173 (230)
T PF03904_consen 153 GIGAMLFVFMLFALVMTIGSD 173 (230)
T ss_pred hHHHHHHHHHHHHHHHHhccc
Confidence 333444444445444444443
No 38
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.50 E-value=62 Score=28.75 Aligned_cols=40 Identities=20% Similarity=0.400 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhh
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTEN 187 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~ 187 (238)
..+..++..+.|+=+|+.+=-..+=+.||-+..+.+..++
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~d 266 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDD 266 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 6777888888888888888666677777755555444433
No 39
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=71.43 E-value=54 Score=26.65 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVL 172 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il 172 (238)
....+++.+++.++.-+.+-+.++-
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~ 104 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777778887777777776543
No 40
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=70.74 E-value=42 Score=28.86 Aligned_cols=13 Identities=8% Similarity=0.235 Sum_probs=5.4
Q ss_pred hhhHHHHHHHHHH
Q 026426 185 TENLQFQADSFQR 197 (238)
Q Consensus 185 s~~L~~~s~~f~~ 197 (238)
...|...+.+...
T Consensus 208 ~~~l~~~~~rl~~ 220 (251)
T PF09753_consen 208 LSSLKRESKRLKE 220 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 41
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=70.72 E-value=8.9 Score=27.90 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHh
Q 026426 200 RQLRRRMWLQNL 211 (238)
Q Consensus 200 ~~l~~~~ww~~~ 211 (238)
|+.||+..||+.
T Consensus 6 kK~K~k~~l~~~ 17 (96)
T PF13800_consen 6 KKAKRKSRLRTV 17 (96)
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 42
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=70.08 E-value=78 Score=29.67 Aligned_cols=41 Identities=7% Similarity=0.073 Sum_probs=21.5
Q ss_pred ccccchhHHHHhhhccCCchhhhHHHHHHHHHHHhHhhhhhhHH
Q 026426 126 DREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIE 169 (238)
Q Consensus 126 ~~~f~~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~im~~ni~ 169 (238)
+.+|...+.+..++. + ..++-+..+.++++.+...+..+++
T Consensus 104 N~~~h~gV~~t~~si-~--~an~tv~~l~nqv~~l~~al~~t~~ 144 (418)
T cd07912 104 NDETHDGVVQLTYSL-R--NANHTVAGIDNQTSDTEASLNVTVE 144 (418)
T ss_pred cHHHhhhHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444555555544443 1 1235556666666666666655554
No 43
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=69.81 E-value=37 Score=27.76 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHh
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQ 198 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~ 198 (238)
.-..++..++++++.-|.+.|+++-..-+.||.+..++..|...+..+...
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~e 159 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESE 159 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999988888877777766655543
No 44
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=69.56 E-value=41 Score=29.07 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=30.2
Q ss_pred hhHHHHhhhccCCchhhhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHH
Q 026426 131 PRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQ 191 (238)
Q Consensus 131 ~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~ 191 (238)
+.+++.+..|+ +|+..++.-+++..+...+--+.--.+...++.+..+-..++..
T Consensus 181 ~~i~~~L~~~~------~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~ 235 (264)
T PF06008_consen 181 EAIRDDLNDYN------AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQ 235 (264)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555552 56666666666666555554444445555555555555555443
No 45
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.01 E-value=18 Score=32.02 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQ 189 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~ 189 (238)
..+.++-+-+.|+..|+.+=-..+.+.|--+|-+.-.-++..
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~ 259 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQ 259 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhh
Confidence 457788888899999999988899999988887765555444
No 46
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.46 E-value=21 Score=29.95 Aligned_cols=17 Identities=24% Similarity=0.651 Sum_probs=11.7
Q ss_pred HHHHHhHHHHH-HHHHHH
Q 026426 193 DSFQRQGRQLR-RRMWLQ 209 (238)
Q Consensus 193 ~~f~~~a~~l~-~~~ww~ 209 (238)
..|+..|...+ |-|||-
T Consensus 170 ~~FR~tSES~NsRvm~Ws 187 (215)
T KOG1690|consen 170 ETFRDTSESANSRVMWWS 187 (215)
T ss_pred HHHHhhhhhhcceeeehh
Confidence 46777777776 557774
No 47
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=66.19 E-value=12 Score=27.20 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 026426 200 RQLRRRMWLQNLQMKLMVGGA 220 (238)
Q Consensus 200 ~~l~~~~ww~~~k~~iii~~v 220 (238)
+-+||..|+..++.+++..++
T Consensus 3 ~i~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 346777788888888665444
No 48
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.30 E-value=94 Score=26.39 Aligned_cols=18 Identities=11% Similarity=0.422 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhHhhhhh
Q 026426 149 KLSKLKAQITEVKGIMMD 166 (238)
Q Consensus 149 kl~~i~~~v~~v~~im~~ 166 (238)
.+.+.-+.+.+-+.|+.+
T Consensus 129 rLeRst~rl~ds~Ria~E 146 (220)
T KOG1666|consen 129 RLERSTDRLKDSQRIALE 146 (220)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 344444455555544443
No 49
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=63.16 E-value=47 Score=22.95 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=16.1
Q ss_pred hHHHHhHHhhhhHHHHHHHHHHhHHHHHHH
Q 026426 176 ERIELLVDKTENLQFQADSFQRQGRQLRRR 205 (238)
Q Consensus 176 e~L~~L~~ks~~L~~~s~~f~~~a~~l~~~ 205 (238)
++||.+++|-|. .+|.-+++..+|+-|-
T Consensus 19 ~rLd~iEeKvEf--~~~Ei~Qr~GkkiGRD 46 (70)
T PF04210_consen 19 KRLDEIEEKVEF--TNAEIAQRAGKKIGRD 46 (70)
T ss_pred HHHHHHHHHHHh--HHHHHHHHHhHHhhhH
Confidence 344444544333 3456677777887765
No 50
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=62.66 E-value=2.7 Score=40.70 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=0.4
Q ss_pred ccccchhHHHHhhhc
Q 026426 126 DREFGPRLKEHMQYC 140 (238)
Q Consensus 126 ~~~f~~~l~~~~~~y 140 (238)
..+|..++.+..+.+
T Consensus 479 yiDfnkel~e~~~n~ 493 (610)
T PF01601_consen 479 YIDFNKELDEIFKNL 493 (610)
T ss_dssp --------------S
T ss_pred CCChHHHHHHHHHhc
Confidence 445566666665544
No 51
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=61.86 E-value=49 Score=28.26 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHHHhH
Q 026426 184 KTENLQFQADSFQRQG 199 (238)
Q Consensus 184 ks~~L~~~s~~f~~~a 199 (238)
.++.|...+.+..+-+
T Consensus 195 N~~~L~~~Serve~y~ 210 (244)
T KOG2678|consen 195 NSQGLMDVSERVEKYD 210 (244)
T ss_pred HHHHHHhhhHHHHHHH
Confidence 3444444444444433
No 52
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=60.92 E-value=5.6 Score=29.15 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhh
Q 026426 210 NLQMKLMVGGAVIAFIIIVWLVAC 233 (238)
Q Consensus 210 ~~k~~iii~~vv~~ii~iI~~~~c 233 (238)
.|+.++..++-+++++++|.+..|
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~C 63 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCC 63 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHH
Confidence 355677666666666666666555
No 53
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.92 E-value=1e+02 Score=26.28 Aligned_cols=19 Identities=11% Similarity=0.454 Sum_probs=8.9
Q ss_pred HHHHHHHH--HHHHHHHHHHH
Q 026426 212 QMKLMVGG--AVIAFIIIVWL 230 (238)
Q Consensus 212 k~~iii~~--vv~~ii~iI~~ 230 (238)
|=.+|+++ .+|.+++++|+
T Consensus 209 rdslILa~Vis~C~llllfy~ 229 (231)
T KOG3208|consen 209 RDSLILAAVISVCTLLLLFYW 229 (231)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 33344444 45555555544
No 54
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.58 E-value=31 Score=28.94 Aligned_cols=78 Identities=10% Similarity=0.155 Sum_probs=45.7
Q ss_pred HHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHH--HHHhHHH-H-HHHHHHHHHHHHHHH
Q 026426 155 AQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMW--LQNLQMK-L-MVGGAVIAFIIIVWL 230 (238)
Q Consensus 155 ~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~w--w~~~k~~-i-ii~~vv~~ii~iI~~ 230 (238)
+++..+|+.|.+==+-++++=|++-+--++-|=|-+.+...+.++...|+.-. .|.++|. + +-.+++++++++||+
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyi 204 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYI 204 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHH
Confidence 56667777776655556666666655555656666888888888866664432 2333332 2 344444455555555
Q ss_pred Hh
Q 026426 231 VA 232 (238)
Q Consensus 231 ~~ 232 (238)
++
T Consensus 205 iv 206 (217)
T KOG0859|consen 205 IV 206 (217)
T ss_pred HH
Confidence 44
No 55
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=59.28 E-value=33 Score=23.12 Aligned_cols=44 Identities=7% Similarity=-0.134 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026426 186 ENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVW 229 (238)
Q Consensus 186 ~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI~ 229 (238)
.+.-.++.++-+.++|=.|+-.++..+...+..+++-++-|+|-
T Consensus 7 ~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ik 50 (61)
T TIGR00327 7 VEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIK 50 (61)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777788888888888888877765555555555443
No 56
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=58.64 E-value=48 Score=21.57 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQ 191 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~ 191 (238)
+.+..+...+.+++++..+=-..+-+.++-|+.+.+..+.-...
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 67888999999999988877777888889898888766555443
No 57
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=58.09 E-value=60 Score=27.78 Aligned_cols=21 Identities=0% Similarity=0.028 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 026426 189 QFQADSFQRQGRQLRRRMWLQ 209 (238)
Q Consensus 189 ~~~s~~f~~~a~~l~~~~ww~ 209 (238)
..++...+..+.++++...-+
T Consensus 193 D~N~~~L~~~Serve~y~ksk 213 (244)
T KOG2678|consen 193 DVNSQGLMDVSERVEKYDKSK 213 (244)
T ss_pred hHHHHHHHhhhHHHHHHHHhh
Confidence 445566666777777665444
No 58
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=57.94 E-value=60 Score=22.46 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=14.3
Q ss_pred HHHHhHHhhhhHHHHHHHHHHhHHHHHHH
Q 026426 177 RIELLVDKTENLQFQADSFQRQGRQLRRR 205 (238)
Q Consensus 177 ~L~~L~~ks~~L~~~s~~f~~~a~~l~~~ 205 (238)
+||++++|-+.. ++.-|++-.+++-|-
T Consensus 23 RLdeieekvef~--~~Ev~Qr~GkkiGRD 49 (75)
T COG4064 23 RLDEIEEKVEFV--NGEVYQRIGKKIGRD 49 (75)
T ss_pred HHHHHHHHHHhh--HHHHHHHHHHHhcch
Confidence 444455444432 345566666777654
No 59
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=55.81 E-value=58 Score=21.60 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHH
Q 026426 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADS 194 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~ 194 (238)
.+.+.....-++++.++-.+.+..+-..++.|.....+..++...-..
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~ 54 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPK 54 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 378888889999999999999999999999999888887777665533
No 60
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=54.96 E-value=1.3e+02 Score=27.90 Aligned_cols=10 Identities=0% Similarity=0.258 Sum_probs=4.0
Q ss_pred HHHHHHHHhH
Q 026426 152 KLKAQITEVK 161 (238)
Q Consensus 152 ~i~~~v~~v~ 161 (238)
.++..+.++.
T Consensus 107 ~i~~~v~~~~ 116 (406)
T PF04906_consen 107 GIDNLVSDTT 116 (406)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 61
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=54.56 E-value=91 Score=25.21 Aligned_cols=7 Identities=29% Similarity=0.752 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 026426 81 FLERVKD 87 (238)
Q Consensus 81 fL~~i~~ 87 (238)
||+++++
T Consensus 6 fL~~L~~ 12 (181)
T PF08006_consen 6 FLNELEK 12 (181)
T ss_pred HHHHHHH
Confidence 4444443
No 62
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=53.59 E-value=41 Score=22.54 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 026426 189 QFQADSFQR 197 (238)
Q Consensus 189 ~~~s~~f~~ 197 (238)
.+.|..|-+
T Consensus 8 nETA~~FL~ 16 (60)
T PF06072_consen 8 NETATEFLR 16 (60)
T ss_pred cccHHHHHH
Confidence 345566654
No 63
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.38 E-value=1.5e+02 Score=26.07 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=8.6
Q ss_pred HHHHHhHHHHHHHHHH
Q 026426 193 DSFQRQGRQLRRRMWL 208 (238)
Q Consensus 193 ~~f~~~a~~l~~~~ww 208 (238)
..-...+.+|++.+..
T Consensus 222 ~nveqg~~~L~kA~~y 237 (269)
T KOG0811|consen 222 VNVEQGTENLRKAAKY 237 (269)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455666665543
No 64
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=51.13 E-value=33 Score=24.69 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=0.4
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 026426 207 WLQNLQMKLMVGGAVIAF 224 (238)
Q Consensus 207 ww~~~k~~iii~~vv~~i 224 (238)
-|-+.+..+++++++.++
T Consensus 100 ~~~~~~~~~~~~~~v~~~ 117 (124)
T PF00482_consen 100 ELIEPLILIIVGALVLFF 117 (124)
T ss_dssp H-----------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444433333
No 65
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=50.89 E-value=16 Score=32.22 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026426 213 MKLMVGGAVIAFIIIVWLV 231 (238)
Q Consensus 213 ~~iii~~vv~~ii~iI~~~ 231 (238)
..++++++|+++|++||+-
T Consensus 265 alvllil~vvliiLYiWly 283 (295)
T TIGR01478 265 ALVLIILTVVLIILYIWLY 283 (295)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566777788889874
No 66
>PF14992 TMCO5: TMCO5 family
Probab=50.64 E-value=1.8e+02 Score=25.75 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 026426 200 RQLRRRMWLQNLQMKLMVGGAVI 222 (238)
Q Consensus 200 ~~l~~~~ww~~~k~~iii~~vv~ 222 (238)
++-++..|.|..++++..+++++
T Consensus 207 ~~~~~~~wkr~lr~l~f~vL~f~ 229 (280)
T PF14992_consen 207 KKNSPTFWKRALRLLFFMVLFFT 229 (280)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Confidence 33446778888888544444333
No 67
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=49.01 E-value=18 Score=25.77 Aligned_cols=6 Identities=0% Similarity=0.030 Sum_probs=2.2
Q ss_pred HHHHHh
Q 026426 227 IVWLVA 232 (238)
Q Consensus 227 iI~~~~ 232 (238)
.+++++
T Consensus 21 ~~~~~~ 26 (85)
T PF11337_consen 21 GIYYFF 26 (85)
T ss_pred HHHHhh
Confidence 333333
No 68
>PTZ00370 STEVOR; Provisional
Probab=49.01 E-value=18 Score=31.99 Aligned_cols=18 Identities=28% Similarity=0.563 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026426 214 KLMVGGAVIAFIIIVWLV 231 (238)
Q Consensus 214 ~iii~~vv~~ii~iI~~~ 231 (238)
.++++++|+++|++||+-
T Consensus 262 lvllil~vvliilYiwly 279 (296)
T PTZ00370 262 LVLLILAVVLIILYIWLY 279 (296)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566677788888874
No 69
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=48.60 E-value=26 Score=21.28 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 026426 215 LMVGGAVIAFIIIV 228 (238)
Q Consensus 215 iii~~vv~~ii~iI 228 (238)
.|+++|++.+++++
T Consensus 7 aIIv~V~vg~~iii 20 (38)
T PF02439_consen 7 AIIVAVVVGMAIII 20 (38)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444443333
No 70
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=46.95 E-value=26 Score=36.15 Aligned_cols=32 Identities=0% Similarity=0.046 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026426 198 QGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVW 229 (238)
Q Consensus 198 ~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI~ 229 (238)
+--|--+...|+.|++++|..+++++++++.+
T Consensus 1057 sp~K~~~~i~W~~yr~~il~~l~ililll~l~ 1088 (1105)
T KOG1326|consen 1057 SPCKSFKFILWHRYRWYILLLLLILILLLLLA 1088 (1105)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444467899999999887766555554433
No 71
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.61 E-value=1.6e+02 Score=26.45 Aligned_cols=34 Identities=24% Similarity=0.531 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHH---hHhhhhhhHHHHHHhhhHHHHhHHh
Q 026426 148 SKLSKLKAQITE---VKGIMMDNIEKVLDRGERIELLVDK 184 (238)
Q Consensus 148 dkl~~i~~~v~~---v~~im~~ni~~il~Rge~L~~L~~k 184 (238)
|.+.++++.+-| ++++|. +++++..+++|-+.+-
T Consensus 232 devrqie~~lvEI~~Lq~ifs---ehvl~Q~~~Id~I~d~ 268 (316)
T KOG3894|consen 232 DEVRQIEKRLVEISALQDIFS---EHVLQQDQNIDLIHDL 268 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 455555544444 444554 5567777788777763
No 72
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=44.92 E-value=40 Score=22.84 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=29.3
Q ss_pred hhHHHHhhhccCCchhhhHHHHHHHHHHHhHhhhhhhHHHHHHh
Q 026426 131 PRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDR 174 (238)
Q Consensus 131 ~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~im~~ni~~il~R 174 (238)
+..+..++.|+.+|.......++++=+++...--+.|+.++++.
T Consensus 17 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 17 EEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667778887666666778888888887777777777666643
No 73
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=44.52 E-value=2.4e+02 Score=28.72 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=5.8
Q ss_pred HHHHHHhhCCC
Q 026426 226 IIVWLVACGGF 236 (238)
Q Consensus 226 ~iI~~~~c~gf 236 (238)
+.++.-.||-+
T Consensus 430 ~~~lGLl~G~~ 440 (806)
T PF05478_consen 430 CLLLGLLCGCC 440 (806)
T ss_pred HHHHHHHHhhc
Confidence 34444577643
No 74
>PF15339 Afaf: Acrosome formation-associated factor
Probab=44.16 E-value=35 Score=27.97 Aligned_cols=24 Identities=33% Similarity=0.726 Sum_probs=14.6
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHhhC
Q 026426 211 LQMKLMVGG-AVIAFIIIVWLVACG 234 (238)
Q Consensus 211 ~k~~iii~~-vv~~ii~iI~~~~c~ 234 (238)
.|+.+++|+ ...+++|++++++|.
T Consensus 128 ~KlkLmLGIsLmTl~lfv~Ll~~c~ 152 (200)
T PF15339_consen 128 LKLKLMLGISLMTLFLFVILLAFCS 152 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554 345566778888884
No 75
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=43.67 E-value=86 Score=20.06 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQA 192 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s 192 (238)
+.+..+...+.+++++..+=-..+-+.++.|+.+.+..+......
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~ 56 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNL 56 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 678888888899988877655666778888888887666555443
No 76
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=43.53 E-value=33 Score=24.00 Aligned_cols=19 Identities=11% Similarity=0.632 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 026426 216 MVGGAVIAFIIIVWLVACG 234 (238)
Q Consensus 216 ii~~vv~~ii~iI~~~~c~ 234 (238)
+++++++++++++++.+|+
T Consensus 6 ~~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhheeEEEEE
Confidence 4444444444555555553
No 77
>PHA03240 envelope glycoprotein M; Provisional
Probab=43.52 E-value=23 Score=30.11 Aligned_cols=6 Identities=0% Similarity=-0.153 Sum_probs=2.3
Q ss_pred eEEEee
Q 026426 16 VVLAEH 21 (238)
Q Consensus 16 ~iLaey 21 (238)
.+||-|
T Consensus 73 ~plC~Y 78 (258)
T PHA03240 73 HPICTY 78 (258)
T ss_pred ceeEEe
Confidence 333333
No 78
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.07 E-value=1.5e+02 Score=22.67 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=7.9
Q ss_pred HHHHHHHHH-HHHHHHHHHH
Q 026426 212 QMKLMVGGA-VIAFIIIVWL 230 (238)
Q Consensus 212 k~~iii~~v-v~~ii~iI~~ 230 (238)
...+....+ .+++.++|++
T Consensus 95 g~~l~~~m~~f~lV~~fi~~ 114 (118)
T KOG3385|consen 95 GISLLCWMAVFSLVAFFILW 114 (118)
T ss_pred CcchHHHHHHHHHHHHHHhh
Confidence 344444443 3344444433
No 79
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.07 E-value=30 Score=26.68 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 026426 214 KLMVGGAVIAFIIIV 228 (238)
Q Consensus 214 ~iii~~vv~~ii~iI 228 (238)
..|+.+|++.+|++|
T Consensus 67 ~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHH
Confidence 444444444444333
No 80
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=42.57 E-value=2e+02 Score=26.84 Aligned_cols=87 Identities=8% Similarity=0.067 Sum_probs=55.9
Q ss_pred EEEEEEcCCeEEEeecCCCC---CHHHHHHHHHhcCCC-CCCceEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHH
Q 026426 7 IYSFVSKGTVVLAEHTSYSG---NFSTIAIQCLQKLPA-SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFL 82 (238)
Q Consensus 7 ~Ya~Iar~~~iLaey~~~~~---~~~~~a~~il~k~~~-~~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL 82 (238)
++...+.-++++...-..+. .+-.+.+.++.-... ++.-.+++.|++.|.|+..+.+.++||+....+......-|
T Consensus 13 h~fIlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL 92 (415)
T PF03164_consen 13 HFFILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQL 92 (415)
T ss_pred eEEEECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHH
Confidence 55566666777765422111 233333444433222 24456778899999999999999999999988876666667
Q ss_pred HHHHHHHHhhh
Q 026426 83 ERVKDDFKQRY 93 (238)
Q Consensus 83 ~~i~~~f~~~~ 93 (238)
+-+........
T Consensus 93 ~~ly~qils~l 103 (415)
T PF03164_consen 93 DYLYSQILSIL 103 (415)
T ss_pred HHHHHHHHHhc
Confidence 76666554443
No 81
>smart00096 UTG Uteroglobin.
Probab=42.21 E-value=60 Score=22.46 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=28.8
Q ss_pred HHHHhhhccCCchhhhHHHHHHHHHHHhHhhhhhhHHHHHH
Q 026426 133 LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLD 173 (238)
Q Consensus 133 l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~im~~ni~~il~ 173 (238)
....++.|+.+|+..+...++++=+|....-=+.||-++++
T Consensus 21 Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~ 61 (69)
T smart00096 21 YEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTE 61 (69)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45566788777777777788888887766666666665554
No 82
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.44 E-value=1e+02 Score=21.04 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=18.7
Q ss_pred HHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 026426 179 ELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLM 216 (238)
Q Consensus 179 ~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~ii 216 (238)
+.+.+-+.+-..++.+|.++..+=-|+-+-+-.+-..+
T Consensus 5 ~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~ai 42 (67)
T KOG3498|consen 5 DQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAI 42 (67)
T ss_pred HHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 33444444444455555555555555555544444443
No 83
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=41.24 E-value=90 Score=19.59 Aligned_cols=44 Identities=30% Similarity=0.468 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQ 191 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~ 191 (238)
+.+..+...+.+++++..+=-..+-+-|+.|+.+.+..+.....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888887655556666778888888665555443
No 84
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=41.07 E-value=1.8e+02 Score=25.50 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=11.5
Q ss_pred hHHHHHHhhhHHHHhHHhhh
Q 026426 167 NIEKVLDRGERIELLVDKTE 186 (238)
Q Consensus 167 ni~~il~Rge~L~~L~~ks~ 186 (238)
+.+++-++.++++..+++.+
T Consensus 31 ~~~~~~e~~~~~~e~~~kae 50 (306)
T PF04888_consen 31 QEKKAEEKAEEIEEAQEKAE 50 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666666665555543
No 85
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=40.31 E-value=2.4e+02 Score=24.20 Aligned_cols=13 Identities=15% Similarity=0.255 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHh
Q 026426 148 SKLSKLKAQITEV 160 (238)
Q Consensus 148 dkl~~i~~~v~~v 160 (238)
|=+..++.++++|
T Consensus 97 dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 97 DFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHHHhh
Confidence 4445555555554
No 86
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.30 E-value=2.3e+02 Score=24.07 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhHhh---hhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHH
Q 026426 148 SKLSKLKAQITEVKGI---MMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLR 203 (238)
Q Consensus 148 dkl~~i~~~v~~v~~i---m~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~ 203 (238)
+++..-+.-..|+.+| |.+|+ +..=+.|+..=+.|........+..+-|+
T Consensus 135 ~rl~ds~Ria~ETEqIG~~IL~dL------~~QRe~L~rar~rL~~td~~lgkS~kiL~ 187 (220)
T KOG1666|consen 135 DRLKDSQRIALETEQIGSEILEDL------HGQREQLERARERLRETDANLGKSRKILT 187 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhchhhhhHHHHHHH
Confidence 6666666555555555 44444 22223333333444444444444443333
No 87
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=39.71 E-value=30 Score=31.90 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026426 203 RRRMWLQNLQMKLMVGGAVIAFIIIV 228 (238)
Q Consensus 203 ~~~~ww~~~k~~iii~~vv~~ii~iI 228 (238)
+++-||.++...+++.+++++++..+
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~~ 319 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGFA 319 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHHH
Confidence 45689999988877666554444333
No 88
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=39.70 E-value=17 Score=33.64 Aligned_cols=13 Identities=23% Similarity=0.721 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhCC
Q 026426 223 AFIIIVWLVACGG 235 (238)
Q Consensus 223 ~ii~iI~~~~c~g 235 (238)
||-|+.||++|+|
T Consensus 383 lvGfLcWwf~crg 395 (397)
T PF03302_consen 383 LVGFLCWWFICRG 395 (397)
T ss_pred HHHHHhhheeecc
Confidence 4457899999987
No 89
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=39.66 E-value=68 Score=21.58 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=30.5
Q ss_pred hhHHHHhhhccCCchhhhHHHHHHHHHHHhHhhhhhhHHHHHH
Q 026426 131 PRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLD 173 (238)
Q Consensus 131 ~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~im~~ni~~il~ 173 (238)
..+...++.|+.+|.......++|+=+++...-=+.|+-++++
T Consensus 17 ~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 17 EEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 4567777888877877788888888887775555556655543
No 90
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=39.31 E-value=2.4e+02 Score=26.96 Aligned_cols=16 Identities=6% Similarity=0.281 Sum_probs=6.2
Q ss_pred HHHhHhhhhhhHHHHH
Q 026426 157 ITEVKGIMMDNIEKVL 172 (238)
Q Consensus 157 v~~v~~im~~ni~~il 172 (238)
.+++.....+.+...+
T Consensus 70 ~~~~~~~w~~~~~~~~ 85 (569)
T PRK10600 70 LQALQDYWRNELKPAL 85 (569)
T ss_pred HHHHHHHHHHhhhHHh
Confidence 3333333333444433
No 91
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=38.71 E-value=1e+02 Score=25.30 Aligned_cols=45 Identities=16% Similarity=0.300 Sum_probs=31.5
Q ss_pred HHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 026426 156 QITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQN 210 (238)
Q Consensus 156 ~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~ 210 (238)
-+.++-.+|.+.+.++++||...+-+. +.|+.=.+-+++.++|=+
T Consensus 127 ~vk~L~~~mv~Sv~elV~~g~E~~~l~----------rgl~~~e~~v~~~~~~y~ 171 (174)
T PF04510_consen 127 LVKELLPKMVKSVKELVERGMEVGFLR----------RGLRDFESFVSRQMNWYK 171 (174)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHH----------HHHHHHHHHHHHHHHHhh
Confidence 344555669999999999998766665 345555566777777744
No 92
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=38.43 E-value=38 Score=24.20 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026426 213 MKLMVGGAVIAFIIIVWLVA 232 (238)
Q Consensus 213 ~~iii~~vv~~ii~iI~~~~ 232 (238)
+..|++++|.+++.++++.+
T Consensus 6 i~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444433
No 93
>PRK13664 hypothetical protein; Provisional
Probab=37.56 E-value=59 Score=21.65 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=8.4
Q ss_pred HHHHHhHHHHHHHH
Q 026426 206 MWLQNLQMKLMVGG 219 (238)
Q Consensus 206 ~ww~~~k~~iii~~ 219 (238)
.|...|.+++++.+
T Consensus 2 ~WLadyWWilill~ 15 (62)
T PRK13664 2 DWLAKYWWILVLVF 15 (62)
T ss_pred chHHHHHHHHHHHH
Confidence 36677777655444
No 94
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=37.46 E-value=70 Score=20.68 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=7.8
Q ss_pred HHHhHHHHH-HHHHHHHH
Q 026426 208 LQNLQMKLM-VGGAVIAF 224 (238)
Q Consensus 208 w~~~k~~ii-i~~vv~~i 224 (238)
|...++.-+ ++++++++
T Consensus 11 y~tLrigGLi~A~vlfi~ 28 (50)
T PF02038_consen 11 YETLRIGGLIFAGVLFIL 28 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHhhccchHHHHHHHHH
Confidence 455565543 33333333
No 95
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=36.56 E-value=1.3e+02 Score=23.06 Aligned_cols=84 Identities=15% Similarity=0.275 Sum_probs=45.9
Q ss_pred EEEcCCeEEEeec--CCCCC--------HHHH---HHHHHhc-CCC-CCC---ceEEEECCe-EEEEEeeCCEEEEEEec
Q 026426 10 FVSKGTVVLAEHT--SYSGN--------FSTI---AIQCLQK-LPA-SSS---KYTYSCDGH-TFNFLLDSGFVFLVVAD 70 (238)
Q Consensus 10 ~Iar~~~iLaey~--~~~~~--------~~~~---a~~il~k-~~~-~~~---k~s~~~~~~-~~~~l~~~~~~~~~i~d 70 (238)
.|++.+.+|.+++ ..+.. ++-+ |..+++. +.. ... +..+..+++ .|.|+...++=|+.+++
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~ 80 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD 80 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence 4788899998764 22222 3322 3334443 222 211 345556666 45576677888888887
Q ss_pred ---CCCCcccHHHHHHHHHHHHHhhh
Q 026426 71 ---ESVGRSVPFVFLERVKDDFKQRY 93 (238)
Q Consensus 71 ---~~~~~~~af~fL~~i~~~f~~~~ 93 (238)
........-.|.+++.+.|....
T Consensus 81 ~~~~~~~d~~ik~fF~~vh~~Y~~~~ 106 (132)
T PF04628_consen 81 MSDNSIRDEDIKQFFKEVHELYVKAL 106 (132)
T ss_dssp GGG-S--HHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHc
Confidence 34455567889999998887665
No 96
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=36.52 E-value=55 Score=27.16 Aligned_cols=37 Identities=35% Similarity=0.479 Sum_probs=23.1
Q ss_pred HHHHHHHhHhhhhh--hHHHHHHhhhHHHHhHHhhhhHH
Q 026426 153 LKAQITEVKGIMMD--NIEKVLDRGERIELLVDKTENLQ 189 (238)
Q Consensus 153 i~~~v~~v~~im~~--ni~~il~Rge~L~~L~~ks~~L~ 189 (238)
.|-+++.++.+|.+ |-+.+++|.-.=.+|.++-++|.
T Consensus 21 aKiq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE 59 (214)
T PF06837_consen 21 AKIQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLE 59 (214)
T ss_pred HHHHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHh
Confidence 34456677888877 77888877544444555555554
No 97
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=35.21 E-value=3.2e+02 Score=24.18 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026426 186 ENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVW 229 (238)
Q Consensus 186 ~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI~ 229 (238)
.+|....+...+.-..-||..-|+-|- +++.+||++++++|.
T Consensus 237 ~n~k~A~kEL~kA~~hqrrt~k~~~~~--Llil~vv~lfv~l~~ 278 (283)
T COG5325 237 DNLKNANKELEKAPAHQRRTKKCRFYL--LLILLVVLLFVSLIK 278 (283)
T ss_pred HHHHhhHHHHHHhHHHHhhhccchhhH--HHHHHHHHHHHHHHH
Confidence 445555555544333333433333333 233334444444443
No 98
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=34.52 E-value=84 Score=18.85 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=9.5
Q ss_pred HHHHHHhHHHHHHHHH
Q 026426 205 RMWLQNLQMKLMVGGA 220 (238)
Q Consensus 205 ~~ww~~~k~~iii~~v 220 (238)
+.|-||...-+.+.++
T Consensus 17 qkwirnit~cfal~vv 32 (40)
T PF13124_consen 17 QKWIRNITFCFALLVV 32 (40)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4688887655544433
No 99
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.44 E-value=2.8e+02 Score=22.94 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=35.1
Q ss_pred CceEEEECCeEEEEEe-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHh
Q 026426 44 SKYTYSCDGHTFNFLL-DSGFVFLVVADESVGRSVPFVFLERVKDDFKQ 91 (238)
Q Consensus 44 ~k~s~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~ 91 (238)
.......+.++.|+.- --|+-|++++++.. ..|=.||+++...|..
T Consensus 122 Gie~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYsD 168 (199)
T KOG3369|consen 122 GIEVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYSD 168 (199)
T ss_pred ceEEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHHH
Confidence 3456667888887765 57999999999877 4677888888887643
No 100
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=33.33 E-value=1.7e+02 Score=25.25 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=39.0
Q ss_pred CCccEEEEEEEcCCeEEEeecCCCCCHHHHHHHHHhcCCCCCCceEEEECCeEEEEEee
Q 026426 2 NQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60 (238)
Q Consensus 2 ~~~~i~Ya~Iar~~~iLaey~~~~~~~~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~ 60 (238)
+|.+|-|..||.-+..+.........+-.+...++..-..+. +..++.++| |+.+.
T Consensus 27 ~pk~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eSeN~-Kyayeg~nY--HwvIT 82 (249)
T PF11675_consen 27 NPKPIAYISVAQPTATFEHDEKKHTKYLDIINDILRDESENI-KYAYEGGNY--HWVIT 82 (249)
T ss_pred CCCceeEEeccCceEEEeecCccchhHHHHHHHHHhcccccc-ceeeeCCce--EEEEE
Confidence 467899999998887776665556666677888887766553 666666665 55443
No 101
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=33.32 E-value=1.2e+02 Score=24.52 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhHHH
Q 026426 200 RQLRRRMWLQNLQMK 214 (238)
Q Consensus 200 ~~l~~~~ww~~~k~~ 214 (238)
...|.+|-.|-.++.
T Consensus 21 s~~r~k~~~R~i~l~ 35 (161)
T PHA02673 21 SVKRQKAIRRYIKLF 35 (161)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444544444444
No 102
>PHA02650 hypothetical protein; Provisional
Probab=33.16 E-value=53 Score=23.29 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 026426 213 MKLMVGGAVI 222 (238)
Q Consensus 213 ~~iii~~vv~ 222 (238)
+++++..+++
T Consensus 52 ~ii~i~~v~i 61 (81)
T PHA02650 52 FIFLIFSLII 61 (81)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 103
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=33.01 E-value=40 Score=35.27 Aligned_cols=22 Identities=32% Similarity=0.763 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC
Q 026426 216 MVGGAVIAFIIIVWLVACGGFK 237 (238)
Q Consensus 216 ii~~vv~~ii~iI~~~~c~gf~ 237 (238)
++++++++.++++++|-||-||
T Consensus 985 vl~GLLlL~llv~~LwK~GFFK 1006 (1030)
T KOG3637|consen 985 VLGGLLLLALLVLLLWKCGFFK 1006 (1030)
T ss_pred HHHHHHHHHHHHHHHHhcCccc
Confidence 4556667777778889997764
No 104
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=32.95 E-value=2.6e+02 Score=22.43 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHh
Q 026426 149 KLSKLKAQITEVKGIMMDNIEKVLDR 174 (238)
Q Consensus 149 kl~~i~~~v~~v~~im~~ni~~il~R 174 (238)
++.+..++..+..+-+.+.+.+.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~e~l~g 189 (275)
T PF00664_consen 164 KIRKLSKKYQEANSELNSFLSESLSG 189 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccchhh
Confidence 33444444444444444444444433
No 105
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=32.79 E-value=1.1e+02 Score=22.44 Aligned_cols=34 Identities=15% Similarity=0.369 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhHHHHHHH----HHHHHhHHHHHHHHH
Q 026426 187 NLQFQADSFQRQGRQLRRR----MWLQNLQMKLMVGGA 220 (238)
Q Consensus 187 ~L~~~s~~f~~~a~~l~~~----~ww~~~k~~iii~~v 220 (238)
+|.-.-+.|.+++.+.++. .+-+|||-.+-.+++
T Consensus 29 dL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i 66 (108)
T KOG4782|consen 29 DLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGI 66 (108)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 3444445555555554432 244566654444433
No 106
>COG4327 Predicted membrane protein [Function unknown]
Probab=32.68 E-value=78 Score=23.27 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026426 198 QGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWL 230 (238)
Q Consensus 198 ~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI~~ 230 (238)
.+...++..|..|..++.++.+|=.++-|+.++
T Consensus 5 ~~~~~a~aywranttli~~lL~vwflVSfvvi~ 37 (101)
T COG4327 5 DAEHPARAYWRANTTLIAALLGVWFLVSFVVIL 37 (101)
T ss_pred ccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345556777888888877666655555554443
No 107
>PHA02844 putative transmembrane protein; Provisional
Probab=32.65 E-value=58 Score=22.81 Aligned_cols=12 Identities=25% Similarity=0.013 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 026426 214 KLMVGGAVIAFI 225 (238)
Q Consensus 214 ~iii~~vv~~ii 225 (238)
+++++.++++++
T Consensus 52 ii~i~~v~~~~~ 63 (75)
T PHA02844 52 ILTIIFVVFATF 63 (75)
T ss_pred HHHHHHHHHHHH
Confidence 333333444333
No 108
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=32.36 E-value=2.6e+02 Score=25.47 Aligned_cols=18 Identities=22% Similarity=0.576 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026426 214 KLMVGGAVIAFIIIVWLV 231 (238)
Q Consensus 214 ~iii~~vv~~ii~iI~~~ 231 (238)
+++++++|.++++.+.++
T Consensus 373 il~ig~~v~~i~~~i~lP 390 (399)
T PRK10573 373 MIITGGIVGTLVVAMYLP 390 (399)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 109
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=31.95 E-value=92 Score=28.05 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhHhhh
Q 026426 148 SKLSKLKAQITEVKGIM 164 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im 164 (238)
+.+.+++.+++.++.+|
T Consensus 230 ~eL~~iqaqL~tvks~m 246 (372)
T COG3524 230 DELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67778899999999999
No 110
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=31.55 E-value=1.1e+02 Score=17.64 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=7.2
Q ss_pred HHHHHHHhHHHHHHHH
Q 026426 204 RRMWLQNLQMKLMVGG 219 (238)
Q Consensus 204 ~~~ww~~~k~~iii~~ 219 (238)
|+.|++-.++..++.+
T Consensus 2 r~~~~~~H~~~g~~~~ 17 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAA 17 (34)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444454444433
No 111
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=31.14 E-value=84 Score=21.98 Aligned_cols=50 Identities=20% Similarity=0.338 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHhcCCC--CCCceEEEECC-eEEEEEe--eCCEEEEEEecCCC
Q 026426 24 YSGNFSTIAIQCLQKLPA--SSSKYTYSCDG-HTFNFLL--DSGFVFLVVADESV 73 (238)
Q Consensus 24 ~~~~~~~~a~~il~k~~~--~~~k~s~~~~~-~~~~~l~--~~~~~~~~i~d~~~ 73 (238)
.-.+|+.+...+-+++.+ +.-+..|+.+| +...-+- ++|-.|+|...+.+
T Consensus 24 ~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~f 78 (80)
T cd01617 24 RFKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPF 78 (80)
T ss_pred hhCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCC
Confidence 347899988888888774 55588888887 5443332 58999999876654
No 112
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=31.03 E-value=2.9e+02 Score=25.17 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026426 215 LMVGGAVIAFIIIVWLV 231 (238)
Q Consensus 215 iii~~vv~~ii~iI~~~ 231 (238)
++++++|+++++.+.++
T Consensus 375 l~ig~~v~~i~~~~~lP 391 (399)
T TIGR02120 375 VVMGGVVLFIVLAVLLP 391 (399)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 113
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=30.82 E-value=44 Score=26.65 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHH
Q 026426 211 LQMKLMVGGAVI 222 (238)
Q Consensus 211 ~k~~iii~~vv~ 222 (238)
.|+++.+.+.++
T Consensus 119 nklilaisvtvv 130 (154)
T PF14914_consen 119 NKLILAISVTVV 130 (154)
T ss_pred chhHHHHHHHHH
Confidence 344444444333
No 114
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=30.54 E-value=22 Score=28.85 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 026426 216 MVGGAVIAFIIIVWLVAC 233 (238)
Q Consensus 216 ii~~vv~~ii~iI~~~~c 233 (238)
|+++||+++++||++.+|
T Consensus 80 iivgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 80 IIVGVICGVIAIVVLIVC 97 (179)
T ss_pred eeeehhhHHHHHHHhHhh
Confidence 333444444444555555
No 115
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=30.25 E-value=2.1e+02 Score=21.32 Aligned_cols=18 Identities=6% Similarity=0.122 Sum_probs=10.0
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 026426 205 RMWLQNLQMKLMVGGAVI 222 (238)
Q Consensus 205 ~~ww~~~k~~iii~~vv~ 222 (238)
+.-||+|-..+++-+++.
T Consensus 39 ki~~KKyg~~~il~~l~~ 56 (104)
T PF12420_consen 39 KIIFKKYGLIFILPFLVP 56 (104)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 356677766655544433
No 116
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=29.85 E-value=1.3e+02 Score=21.36 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=14.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 026426 203 RRRMWLQNLQMKLMVGGAVIAFI 225 (238)
Q Consensus 203 ~~~~ww~~~k~~iii~~vv~~ii 225 (238)
++..|.+|.+++.++.++=.++.
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~vvs 25 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFVVS 25 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888776555433333
No 117
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=28.53 E-value=71 Score=22.29 Aligned_cols=9 Identities=33% Similarity=0.552 Sum_probs=4.0
Q ss_pred HHHhHhhhh
Q 026426 157 ITEVKGIMM 165 (238)
Q Consensus 157 v~~v~~im~ 165 (238)
+|.|+.+|.
T Consensus 24 i~vVksVlt 32 (72)
T PF12575_consen 24 INVVKSVLT 32 (72)
T ss_pred HHHHHHHHc
Confidence 444444443
No 118
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=28.48 E-value=1.9e+02 Score=20.43 Aligned_cols=27 Identities=7% Similarity=0.226 Sum_probs=10.9
Q ss_pred hhHHHHhHHhhhhHHHHHHHHHHhHHH
Q 026426 175 GERIELLVDKTENLQFQADSFQRQGRQ 201 (238)
Q Consensus 175 ge~L~~L~~ks~~L~~~s~~f~~~a~~ 201 (238)
-.+|..+..+-..+.......++.+.+
T Consensus 63 ~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 63 VKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444443333
No 119
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=28.38 E-value=96 Score=18.37 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=6.3
Q ss_pred HHHHHhHHHHHHHH
Q 026426 206 MWLQNLQMKLMVGG 219 (238)
Q Consensus 206 ~ww~~~k~~iii~~ 219 (238)
.|.+-.++..++.+
T Consensus 3 ~~~~~H~W~Gl~~g 16 (37)
T PF13706_consen 3 ILRKLHRWLGLILG 16 (37)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455544444
No 120
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=27.97 E-value=98 Score=22.14 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=9.0
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 026426 210 NLQMKLMVGGAVIAFIIIVW 229 (238)
Q Consensus 210 ~~k~~iii~~vv~~ii~iI~ 229 (238)
+.|=.+|+.++|++++.+|+
T Consensus 32 ~lKrlliivvVvVlvVvviv 51 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLVVVVIV 51 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEeeehhHHHHH
Confidence 44444444444444444443
No 121
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=27.97 E-value=2.8e+02 Score=22.31 Aligned_cols=7 Identities=14% Similarity=0.073 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 026426 202 LRRRMWL 208 (238)
Q Consensus 202 l~~~~ww 208 (238)
++.-.-|
T Consensus 85 l~allsW 91 (156)
T PF08372_consen 85 LQALLSW 91 (156)
T ss_pred HHHhhcc
Confidence 3333444
No 122
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=27.63 E-value=1.7e+02 Score=27.26 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhC
Q 026426 210 NLQMKLMVGGAVIAFIIIVWLVACG 234 (238)
Q Consensus 210 ~~k~~iii~~vv~~ii~iI~~~~c~ 234 (238)
-++|++++.++.|+++|+++++.|+
T Consensus 383 ~F~~vv~~~~~~~~~lf~~i~~~~k 407 (414)
T KOG2662|consen 383 AFKWVVGITFTLCIVLFVVILGYAK 407 (414)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778888888888777663
No 123
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=27.63 E-value=71 Score=23.57 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026426 193 DSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFI 225 (238)
Q Consensus 193 ~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii 225 (238)
.+|-+.+-.....-.|||+-+.+.+.++.+++.
T Consensus 34 ~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~ 66 (103)
T PF06422_consen 34 DDYLEESYGYSYSHRWRNFGILIAFWIFFIVLT 66 (103)
T ss_pred HHHHhhhccccccchhhhHHHHHHHHHHHHHHH
Confidence 345555556666778899887766555444333
No 124
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=27.50 E-value=1.1e+02 Score=26.61 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026426 199 GRQLRRRMWLQNLQMKLMVGGAVIAFI 225 (238)
Q Consensus 199 a~~l~~~~ww~~~k~~iii~~vv~~ii 225 (238)
+.+-+--.||..|.+++++++.+.++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLLLG 235 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555689999998888777654443
No 125
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=27.49 E-value=1e+02 Score=21.46 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=16.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 026426 205 RMWLQNLQMKLMVGGAVIAFIIIV 228 (238)
Q Consensus 205 ~~ww~~~k~~iii~~vv~~ii~iI 228 (238)
|.||+..|..+++.+..+++-+.|
T Consensus 1 r~~~~~ik~~~LF~~~T~lfYy~~ 24 (71)
T PF14004_consen 1 RRWLDMIKFFLLFTGCTLLFYYAI 24 (71)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888898887777665554433
No 126
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=27.48 E-value=28 Score=27.61 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCC
Q 026426 220 AVIAFIIIVWLVACGGF 236 (238)
Q Consensus 220 vv~~ii~iI~~~~c~gf 236 (238)
+|+++|+++++.+|||+
T Consensus 120 ~i~~~i~g~ll~i~~gi 136 (145)
T PF10661_consen 120 TILLSIGGILLAICGGI 136 (145)
T ss_pred HHHHHHHHHHHHHHHHH
No 127
>PHA03011 hypothetical protein; Provisional
Probab=27.30 E-value=2.4e+02 Score=21.07 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=33.9
Q ss_pred hHHHHhhhccCCchhhhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhh
Q 026426 132 RLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTEN 187 (238)
Q Consensus 132 ~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~ 187 (238)
.+.++..+|| .-.|...-+..+..+...+.++|.+.+.--...+|.|.+.-.+
T Consensus 65 ~ldeL~~qYN---~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 65 ILDELIAQYN---ELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 3444555553 2236666677777788888888888777666666666655443
No 128
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=27.10 E-value=2.4e+02 Score=23.58 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=4.1
Q ss_pred HHHHHHhHHHH
Q 026426 205 RMWLQNLQMKL 215 (238)
Q Consensus 205 ~~ww~~~k~~i 215 (238)
..|..-.|+.+
T Consensus 151 t~W~~~Iki~i 161 (204)
T PF00517_consen 151 TKWLWYIKIFI 161 (204)
T ss_dssp HHHHHHHHH--
T ss_pred HHHHHHHHHHH
Confidence 34444445444
No 129
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=27.06 E-value=3.7e+02 Score=25.78 Aligned_cols=16 Identities=13% Similarity=-0.101 Sum_probs=7.2
Q ss_pred HHhHHHHHHHHHHHHH
Q 026426 209 QNLQMKLMVGGAVIAF 224 (238)
Q Consensus 209 ~~~k~~iii~~vv~~i 224 (238)
--+-+.+++.++||++
T Consensus 211 ~~~v~lL~l~LvvC~v 226 (526)
T KOG4433|consen 211 LAYVLLLTLLLVVCLV 226 (526)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444455543
No 130
>PHA02557 22 prohead core protein; Provisional
Probab=26.67 E-value=1.6e+02 Score=25.94 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHh-hhccCCch-hhhHHHHHHH
Q 026426 78 PFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHM-QYCMSHPE-EMSKLSKLKA 155 (238)
Q Consensus 78 af~fL~~i~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~-~~y~~~p~-~~dkl~~i~~ 155 (238)
+-+||+.+-++|.....-..++.....+ +..|-..|+.+. +++-.-|. ..|.+..+..
T Consensus 89 vd~~l~~~~~eW~~ENk~Av~~~IKaem--------------------~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~ 148 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKLAVDRGIKAEL--------------------FESFLGGLKELFVEHNVVVPEEKVDVVAEMEE 148 (271)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHH
Confidence 4568999988887766433333222222 344445566655 33323454 3578888889
Q ss_pred HHHHhHhhhhhhHHHHHHhhhHHHH------hHHhhhhHHHH
Q 026426 156 QITEVKGIMMDNIEKVLDRGERIEL------LVDKTENLQFQ 191 (238)
Q Consensus 156 ~v~~v~~im~~ni~~il~Rge~L~~------L~~ks~~L~~~ 191 (238)
+|++...-...-++...+..+.+.. +.+.|.+|++.
T Consensus 149 ~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtds 190 (271)
T PHA02557 149 ELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTES 190 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHH
Confidence 9888887777777666666665544 44455666543
No 131
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.37 E-value=1.7e+02 Score=27.04 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=30.1
Q ss_pred eeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhc
Q 026426 59 LDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYG 94 (238)
Q Consensus 59 ~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (238)
..+++.+++++.-+.|.=.++.||.+|-+-|.+-++
T Consensus 61 ~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 61 YRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred eccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 457777777777888888999999999999988775
No 132
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.23 E-value=4.2e+02 Score=22.70 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=31.9
Q ss_pred hhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHH-----HHHHHHHhHHHHHHHH
Q 026426 166 DNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLR-----RRMWLQNLQMKLMVGG 219 (238)
Q Consensus 166 ~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~-----~~~ww~~~k~~iii~~ 219 (238)
-+++.+.++-+++..-..++..+.+-+..+..+=+.|. |--||.-+-...++++
T Consensus 153 ~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v 211 (236)
T KOG3287|consen 153 VKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILV 211 (236)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHH
Confidence 35555666666666666666777666666555444433 4568877766554444
No 133
>COG5547 Small integral membrane protein [Function unknown]
Probab=26.15 E-value=87 Score=20.90 Aligned_cols=14 Identities=14% Similarity=0.403 Sum_probs=8.7
Q ss_pred HHHHhHHHHHHHHH
Q 026426 207 WLQNLQMKLMVGGA 220 (238)
Q Consensus 207 ww~~~k~~iii~~v 220 (238)
|.+.+|+-++-+++
T Consensus 3 flk~fkypIIgglv 16 (62)
T COG5547 3 FLKKFKYPIIGGLV 16 (62)
T ss_pred HHHHhccchHHHHH
Confidence 66777776664443
No 134
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.08 E-value=3.9e+02 Score=22.38 Aligned_cols=12 Identities=17% Similarity=-0.009 Sum_probs=4.7
Q ss_pred hHHhhhhHHHHH
Q 026426 181 LVDKTENLQFQA 192 (238)
Q Consensus 181 L~~ks~~L~~~s 192 (238)
|.++-+.++...
T Consensus 144 L~~~l~~~~~~~ 155 (206)
T PRK10884 144 LKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333334444333
No 135
>PHA02975 hypothetical protein; Provisional
Probab=25.82 E-value=87 Score=21.60 Aligned_cols=8 Identities=0% Similarity=-0.479 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 026426 217 VGGAVIAF 224 (238)
Q Consensus 217 i~~vv~~i 224 (238)
++.+++++
T Consensus 51 i~~v~~~~ 58 (69)
T PHA02975 51 IIFITCIA 58 (69)
T ss_pred HHHHHHHH
Confidence 33333333
No 136
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=25.57 E-value=94 Score=28.62 Aligned_cols=17 Identities=6% Similarity=-0.011 Sum_probs=9.4
Q ss_pred HHHHHHhHHHHHHHHHH
Q 026426 205 RMWLQNLQMKLMVGGAV 221 (238)
Q Consensus 205 ~~ww~~~k~~iii~~vv 221 (238)
+.+||+.++++++++++
T Consensus 34 ~~L~r~k~~Il~~~~~~ 50 (377)
T PRK10381 34 SVLWKAKKTIIAITFAF 50 (377)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666665544433
No 137
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=25.37 E-value=1.5e+02 Score=19.38 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHH
Q 026426 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQA 192 (238)
Q Consensus 149 kl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s 192 (238)
-+.++|.+.+..-.-+. .++-+=|.+|++|+..-.+|..+|
T Consensus 11 lL~qmq~kFq~mS~~I~---~riDeM~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 11 LLQQMQDKFQTMSDQIL---GRIDEMSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCHHHH-------
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHhc
Confidence 33444555444443333 333344667777776666665544
No 138
>PHA03054 IMV membrane protein; Provisional
Probab=25.30 E-value=92 Score=21.62 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 026426 212 QMKLMVGGAVIAF 224 (238)
Q Consensus 212 k~~iii~~vv~~i 224 (238)
.++++++.+++++
T Consensus 50 ~~ii~l~~v~~~~ 62 (72)
T PHA03054 50 WLIIIFFIVLILL 62 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 139
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.27 E-value=4.3e+02 Score=22.49 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhh--------hHHHHhHH---hhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRG--------ERIELLVD---KTENLQFQADSFQRQGRQLRRRMWLQNLQMKL 215 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rg--------e~L~~L~~---ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~i 215 (238)
.-|.++++.-++++. ++|+.++.+-- ++|+++.. ..+.|+..+..+...+++-+...-.=|.+..+
T Consensus 118 ~~IQk~Kk~ynd~r~--~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~ 194 (216)
T KOG0862|consen 118 TFIQKTKKRYNDTRS--QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLI 194 (216)
T ss_pred HHHHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHH
Confidence 346777777777754 44444433222 23333333 34555667777777776666555444544443
No 140
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=24.93 E-value=98 Score=20.37 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHhcCCCC-CCceEEEECCeEEEEEe--eCCEEEEEEecCC
Q 026426 25 SGNFSTIAIQCLQKLPAS-SSKYTYSCDGHTFNFLL--DSGFVFLVVADES 72 (238)
Q Consensus 25 ~~~~~~~a~~il~k~~~~-~~k~s~~~~~~~~~~l~--~~~~~~~~i~d~~ 72 (238)
-.+|+.+...+-+++... .-|..|+.+|+..+-+- .+|-.|+|...+.
T Consensus 8 ~~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e~ 58 (60)
T PF03607_consen 8 FRSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGREP 58 (60)
T ss_dssp HSSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSSS
T ss_pred hcCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCCc
Confidence 367888888888877643 25888999887665443 4888999986553
No 141
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=24.76 E-value=1e+02 Score=26.25 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026426 200 RQLRRRMWLQNLQMKLMVGGAVIAFIIIVW 229 (238)
Q Consensus 200 ~~l~~~~ww~~~k~~iii~~vv~~ii~iI~ 229 (238)
++.=.+||.+.+|.+.++++++ +++...+
T Consensus 23 ~~~~~~~~~k~~r~~Al~alil-~i~as~~ 51 (218)
T PF10039_consen 23 KKGVFRMWRKYKRAIALAALIL-FILASLG 51 (218)
T ss_pred cccHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 4433345555555555544433 3333333
No 142
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=24.72 E-value=58 Score=23.65 Aligned_cols=7 Identities=14% Similarity=0.786 Sum_probs=3.2
Q ss_pred HHHHHhh
Q 026426 227 IVWLVAC 233 (238)
Q Consensus 227 iI~~~~c 233 (238)
+|.+.+|
T Consensus 48 VilwfvC 54 (94)
T PF05393_consen 48 VILWFVC 54 (94)
T ss_pred HHHHHHH
Confidence 3444455
No 143
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=24.67 E-value=5.7e+02 Score=23.73 Aligned_cols=8 Identities=25% Similarity=-0.064 Sum_probs=3.2
Q ss_pred HHhhCCCC
Q 026426 230 LVACGGFK 237 (238)
Q Consensus 230 ~~~c~gf~ 237 (238)
++.|+.-+
T Consensus 205 ~glar~Sk 212 (406)
T PF04906_consen 205 LGLARQSK 212 (406)
T ss_pred HHHHhcCc
Confidence 34444333
No 144
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast. This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth.
Probab=24.63 E-value=2.9e+02 Score=21.83 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=32.3
Q ss_pred cEEEEEEE-----cCCeEEEeecCC-CC--CHHHHHHHHHhcCCCCCCceEEEECCeEEEEEeeC
Q 026426 5 GLIYSFVS-----KGTVVLAEHTSY-SG--NFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDS 61 (238)
Q Consensus 5 ~i~Ya~Ia-----r~~~iLaey~~~-~~--~~~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~~ 61 (238)
.|.|.++| +|.++-.+|+.. .| +-.-+|..+| |.+ .....++.+++|+..+
T Consensus 1 ~veyIL~AEFDid~Gp~l~hQYP~~i~g~~de~~LAelML---PDg---~h~r~~DwTvFfL~~~ 59 (145)
T PF07792_consen 1 HVEYILLAEFDIDKGPVLKHQYPSPIPGLEDEHMLAELML---PDG---AHKRSEDWTVFFLNRD 59 (145)
T ss_pred CeeEEEEEEEecCcCCEEEEeCCCCccCCccHHHHHHhhC---Ccc---cccccCCEEEEEEccC
Confidence 36799988 578888999864 33 5555677665 332 2233357777777653
No 145
>PHA02819 hypothetical protein; Provisional
Probab=24.63 E-value=1e+02 Score=21.42 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 026426 214 KLMVGGAVI 222 (238)
Q Consensus 214 ~iii~~vv~ 222 (238)
+++++.+++
T Consensus 50 ii~l~~~~~ 58 (71)
T PHA02819 50 IIGLVTIVF 58 (71)
T ss_pred HHHHHHHHH
Confidence 333333333
No 146
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=24.61 E-value=2.9e+02 Score=20.54 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=4.3
Q ss_pred HHhHHHHHHHH
Q 026426 209 QNLQMKLMVGG 219 (238)
Q Consensus 209 ~~~k~~iii~~ 219 (238)
||.-.-+.|++
T Consensus 50 rN~~Tgl~L~~ 60 (100)
T PF09813_consen 50 RNLLTGLALGA 60 (100)
T ss_pred hhHHHHHHHHH
Confidence 34433333333
No 147
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=24.53 E-value=6.3e+02 Score=24.20 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhH
Q 026426 150 LSKLKAQITEVK 161 (238)
Q Consensus 150 l~~i~~~v~~v~ 161 (238)
+..+++..+.-.
T Consensus 122 ~~~~~~~~~~y~ 133 (554)
T PRK15041 122 AAEIKRNYDIYH 133 (554)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 148
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=24.45 E-value=4e+02 Score=22.70 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=7.5
Q ss_pred hhHHHHhHHhhhhHHHHH
Q 026426 175 GERIELLVDKTENLQFQA 192 (238)
Q Consensus 175 ge~L~~L~~ks~~L~~~s 192 (238)
++.|+.|+.+-+++.-..
T Consensus 14 ~~~L~rle~qi~q~~~~~ 31 (251)
T COG5415 14 TADLSRLESQIHQLDVAL 31 (251)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 149
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=24.31 E-value=3.3e+02 Score=20.83 Aligned_cols=58 Identities=26% Similarity=0.338 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhH----hhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHH
Q 026426 148 SKLSKLKAQITEVK----GIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRR 205 (238)
Q Consensus 148 dkl~~i~~~v~~v~----~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~ 205 (238)
..+.+++..++++. ..+.+|.+.++..-..++.++.-.+.+............+++..
T Consensus 33 ~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~e 94 (132)
T PF10392_consen 33 TPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSE 94 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554443 45566778888877777777776666666666666666666644
No 150
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=24.28 E-value=3.1e+02 Score=20.81 Aligned_cols=21 Identities=0% Similarity=0.142 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHH
Q 026426 195 FQRQGRQLRRRMWLQNLQMKLMV 217 (238)
Q Consensus 195 f~~~a~~l~~~~ww~~~k~~iii 217 (238)
..+++++ ++.+|++|.++.+.
T Consensus 58 ~~~k~~~--~~~~i~kyg~~GL~ 78 (121)
T PF06695_consen 58 LEKKAEK--KSKKIEKYGFWGLA 78 (121)
T ss_pred HHHHHHH--HHHHHHHHhHHHHH
Confidence 3344444 66778888755443
No 151
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=23.69 E-value=40 Score=24.76 Aligned_cols=13 Identities=23% Similarity=0.744 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhCC
Q 026426 223 AFIIIVWLVACGG 235 (238)
Q Consensus 223 ~ii~iI~~~~c~g 235 (238)
++.++.|+++|++
T Consensus 82 lv~~l~w~f~~r~ 94 (96)
T PTZ00382 82 LVGFLCWWFVCRG 94 (96)
T ss_pred HHHHHhheeEEee
Confidence 3345667777753
No 152
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.62 E-value=4.6e+02 Score=22.26 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=14.2
Q ss_pred HHHHHHhhh-HHHHhHHhhhhHHHHHHHHH
Q 026426 168 IEKVLDRGE-RIELLVDKTENLQFQADSFQ 196 (238)
Q Consensus 168 i~~il~Rge-~L~~L~~ks~~L~~~s~~f~ 196 (238)
+|.++++|. -+|.|.++-..|+..-+++.
T Consensus 138 lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~ 167 (213)
T KOG3251|consen 138 LDDLLESGSAILENLVEQRLTLKGTQKKIL 167 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555553 34555555555554444443
No 153
>COG4499 Predicted membrane protein [Function unknown]
Probab=23.40 E-value=1.1e+02 Score=28.35 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=16.0
Q ss_pred HHHHHHhcCCCCC-CceEEEECCeEEEEEe
Q 026426 31 IAIQCLQKLPASS-SKYTYSCDGHTFNFLL 59 (238)
Q Consensus 31 ~a~~il~k~~~~~-~k~s~~~~~~~~~~l~ 59 (238)
+-..++++.||.- ...+.+.+.+.+||-+
T Consensus 40 ~~~~lld~~~~f~~~eit~~~Ds~vIsy~i 69 (434)
T COG4499 40 LLAELLDKSPPFIVAEITEDNDSFVISYPI 69 (434)
T ss_pred HHHHHhccCCCccceeecccCceeEEEecC
Confidence 4456778877763 2223344566666643
No 154
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=23.30 E-value=1.9e+02 Score=20.73 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=9.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 026426 206 MWLQNLQMKLMVGGAVIAFIIIVW 229 (238)
Q Consensus 206 ~ww~~~k~~iii~~vv~~ii~iI~ 229 (238)
.-|.+.-.+++++++++..++++|
T Consensus 9 ~~~~~~l~i~l~~~v~~~a~~~v~ 32 (97)
T PF04999_consen 9 IKRQKKLIILLVIVVLISALGVVY 32 (97)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444
No 155
>PHA03386 P10 fibrous body protein; Provisional
Probab=23.08 E-value=2e+02 Score=21.10 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhh
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTEN 187 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~ 187 (238)
+|+..+|.+|++++.- .+++-.--+.|+.+..+-.+
T Consensus 19 ~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~ 54 (94)
T PHA03386 19 TKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSD 54 (94)
T ss_pred hHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHH
Confidence 7888899998888743 33333333444444444433
No 156
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=22.94 E-value=64 Score=27.22 Aligned_cols=37 Identities=19% Similarity=0.548 Sum_probs=24.0
Q ss_pred HHHHHHHHHH----HhHHHHHHH-------------H-HHHHHHHHHHHHhhCCC
Q 026426 200 RQLRRRMWLQ----NLQMKLMVG-------------G-AVIAFIIIVWLVACGGF 236 (238)
Q Consensus 200 ~~l~~~~ww~----~~k~~iii~-------------~-vv~~ii~iI~~~~c~gf 236 (238)
..+.++.||+ ..|+++.++ . ......++|++.+|.||
T Consensus 96 ~~fw~k~w~eg~~~~ik~Ylfl~kkPh~~~~~NPia~~AyFf~~lmiv~MiltGf 150 (227)
T COG1969 96 VPFWRKAWWEGVWYQIKWYLFLGKKPHTKGGHNPIAQVAYFFYFLMIVFMILTGF 150 (227)
T ss_pred hhhhHHHHHHHHHHHhhhheeecCCCccccccCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4567899999 788877632 2 23334456667777776
No 157
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.64 E-value=4.3e+02 Score=21.61 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQR 197 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~ 197 (238)
...+..+.++++--.-+.+.|+.+-+-..++..|.+|+..|...-..|..
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555566666677777777766666654
No 158
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.63 E-value=66 Score=20.43 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=11.2
Q ss_pred HhHHHHHH-HHHHHHHHHHHHH-Hhh
Q 026426 210 NLQMKLMV-GGAVIAFIIIVWL-VAC 233 (238)
Q Consensus 210 ~~k~~iii-~~vv~~ii~iI~~-~~c 233 (238)
+++|.+++ ++++|++++...+ .-|
T Consensus 3 k~rwiili~iv~~Cl~lyl~ald~~C 28 (47)
T PRK10299 3 KFRWVVLVVVVLACLLLWAQVFNMMC 28 (47)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 44555443 3345555544433 344
No 159
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.56 E-value=3.3e+02 Score=24.04 Aligned_cols=46 Identities=24% Similarity=0.453 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHH
Q 026426 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADS 194 (238)
Q Consensus 149 kl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~ 194 (238)
.+.++..-+..+|+...+--.++=...+.|+.+.++++++...-..
T Consensus 219 NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~ 264 (273)
T KOG3065|consen 219 NLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDK 264 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHH
Confidence 4555666666666665555556666677888888888888765543
No 160
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=21.96 E-value=3.7e+02 Score=20.59 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHhHHH
Q 026426 198 QGRQLRRRMWLQNLQMK 214 (238)
Q Consensus 198 ~a~~l~~~~ww~~~k~~ 214 (238)
+-+.++|++++=+.-+.
T Consensus 51 el~~L~rR~~li~~ai~ 67 (130)
T PF11026_consen 51 ELRILRRRARLIRRAIT 67 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555444443
No 161
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.87 E-value=7.2e+02 Score=25.11 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=10.1
Q ss_pred hhhhhhHHHHHHhhhHHH
Q 026426 162 GIMMDNIEKVLDRGERIE 179 (238)
Q Consensus 162 ~im~~ni~~il~Rge~L~ 179 (238)
+.+.+.++.+.+|.+.|.
T Consensus 596 e~LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 596 EKLAERYEEAKDKQEKLM 613 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444556666666665544
No 162
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.38 E-value=2.1e+02 Score=17.89 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026426 212 QMKLMVGGAVIAFIIIVWL 230 (238)
Q Consensus 212 k~~iii~~vv~~ii~iI~~ 230 (238)
+.+.++..+++++.+++|+
T Consensus 11 ~~~~~v~~~~~F~gi~~w~ 29 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWA 29 (49)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 163
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=21.30 E-value=8.6e+02 Score=24.55 Aligned_cols=6 Identities=50% Similarity=1.597 Sum_probs=2.4
Q ss_pred HHHHHH
Q 026426 224 FIIIVW 229 (238)
Q Consensus 224 ii~iI~ 229 (238)
+++++|
T Consensus 344 ~~~~~~ 349 (914)
T PRK11466 344 LILILW 349 (914)
T ss_pred HHHHHH
Confidence 334444
No 164
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=21.12 E-value=2.5e+02 Score=22.15 Aligned_cols=31 Identities=13% Similarity=0.492 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERI 178 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L 178 (238)
..+.+...+++.-..-..+-+...|++|..|
T Consensus 51 ~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 51 KEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 5566666666665444445556666666543
No 165
>PLN03223 Polycystin cation channel protein; Provisional
Probab=21.10 E-value=1.9e+02 Score=31.44 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHH
Q 026426 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQ 189 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~ 189 (238)
.|.+.+-++.+-+++.-+.++-.++++|+++|.++++|-.+|.
T Consensus 1580 ~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~ 1622 (1634)
T PLN03223 1580 VDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLE 1622 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 3566677778888888888888888888888888887766654
No 166
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.83 E-value=4e+02 Score=26.02 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHH
Q 026426 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQR 197 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~ 197 (238)
.+++...++++++++.-=.+|...+.++-+.++.|.............|++
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~ 240 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKN 240 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999988855567778888888888777766665544444443
No 167
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=20.44 E-value=1.2e+02 Score=21.87 Aligned_cols=25 Identities=16% Similarity=0.547 Sum_probs=16.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026426 204 RRMWLQNLQMKLMVGGAVIAFIIIVWL 230 (238)
Q Consensus 204 ~~~ww~~~k~~iii~~vv~~ii~iI~~ 230 (238)
.|.=|..+...++++++++ +++||+
T Consensus 56 gK~~W~~fg~~~vVGvvLl--v~viwL 80 (87)
T PF11190_consen 56 GKKTWGDFGATVVVGVVLL--VFVIWL 80 (87)
T ss_pred CcccHHHhhhHHHHHHHHH--HHHHHH
Confidence 4556778888777766444 455665
No 168
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=20.11 E-value=1.7e+02 Score=27.04 Aligned_cols=33 Identities=18% Similarity=0.505 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 026426 184 KTENLQFQADSFQRQGRQLRRRMWLQNLQMKLM 216 (238)
Q Consensus 184 ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~ii 216 (238)
|+.+.--.++.|..+-+.-+|-+|-|.+++-++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (379)
T PRK12430 109 KTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRII 141 (379)
T ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 333333344556555566677778777776665
No 169
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=20.04 E-value=89 Score=26.50 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 026426 211 LQMKLMVGGAVIAFIIIVW 229 (238)
Q Consensus 211 ~k~~iii~~vv~~ii~iI~ 229 (238)
.+.|+++++++++++++|.
T Consensus 177 ~~~W~i~~~~~i~~i~~i~ 195 (215)
T PHA02947 177 NKPWFIVGVVIILIIFVIA 195 (215)
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 4566666666666666553
Done!