Query 026426
Match_columns 238
No_of_seqs 155 out of 976
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 2E-55 7E-60 364.2 5.5 189 3-212 1-189 (189)
2 2nut_C Vesicle-trafficking pro 100.0 4.1E-47 1.4E-51 316.2 13.2 184 5-210 2-196 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 2.4E-34 8.2E-39 239.2 10.3 176 4-204 2-194 (199)
4 4afi_A AP-3 complex subunit de 100.0 1.8E-31 6.2E-36 217.0 13.7 120 3-142 53-172 (173)
5 3hd7_A Vesicle-associated memb 100.0 1.7E-29 5.8E-34 184.7 12.2 88 147-234 4-91 (91)
6 2vx8_A Nucleoporin-like protei 99.9 1.9E-27 6.6E-32 192.7 11.6 121 3-143 43-163 (169)
7 2kog_A Vesicle-associated memb 99.9 9.2E-29 3.1E-33 189.0 1.7 89 146-234 31-119 (119)
8 2nps_A VAMP-4, vesicle-associa 99.9 1.2E-23 4.2E-28 147.9 4.8 72 143-214 3-74 (74)
9 3bw6_A Synaptobrevin homolog Y 99.9 4.7E-22 1.6E-26 157.3 12.6 123 4-149 5-144 (144)
10 1sfc_A VAMP 2, protein (synapt 99.9 2.6E-22 8.8E-27 147.7 8.9 68 147-214 29-96 (96)
11 1l4a_A Synaptobrevin; snare, s 99.9 4.1E-23 1.4E-27 147.3 3.1 71 143-213 10-80 (80)
12 1n7s_A Vesicle-associated memb 99.8 1.8E-19 6.1E-24 122.8 8.0 61 147-207 3-63 (63)
13 3b5n_A Synaptobrevin homolog 1 99.8 2.2E-19 7.4E-24 121.6 7.9 60 148-207 2-61 (61)
14 1gl2_A Endobrevin; membrane pr 99.7 6.9E-18 2.3E-22 115.5 6.0 62 143-204 4-65 (65)
15 1urq_A M-tomosyn isoform; tran 99.6 3.7E-15 1.3E-19 100.8 6.7 59 148-206 4-62 (63)
16 3fie_C Fragment of vesicle-ass 98.0 2.1E-08 7.2E-13 60.7 -7.4 30 147-176 8-37 (38)
17 3zym_A Phosphatidylinositol-bi 97.6 2.1E-05 7.2E-10 69.0 2.3 32 147-178 279-310 (310)
18 3hd7_B Syntaxin-1A; membrane p 97.5 0.005 1.7E-07 45.6 13.7 45 148-192 21-65 (109)
19 2fh5_A Signal recognition part 97.2 0.0008 2.7E-08 54.4 7.2 88 7-96 13-106 (185)
20 3hd7_A Vesicle-associated memb 95.3 0.39 1.3E-05 34.0 11.2 50 148-197 12-61 (91)
21 1w63_Q Adapter-related protein 92.4 1.1 3.8E-05 34.7 9.8 90 5-94 1-96 (158)
22 2vgl_S AP-2 complex subunit si 92.1 1.5 5E-05 33.3 9.9 49 46-94 48-96 (142)
23 3tjz_C Coatomer subunit zeta-1 91.3 4 0.00014 31.5 11.9 88 5-93 12-105 (153)
24 3hd7_B Syntaxin-1A; membrane p 89.2 4.9 0.00017 29.1 11.6 8 161-168 47-54 (109)
25 1w63_M Adaptor-related protein 87.3 2.6 8.8E-05 37.9 9.1 91 4-94 1-96 (423)
26 2vgl_M AP-2 complex subunit MU 87.2 8.8 0.0003 34.5 12.6 49 46-94 46-94 (435)
27 2kog_A Vesicle-associated memb 86.6 0.11 3.9E-06 38.8 -0.3 52 148-199 40-91 (119)
28 1jth_B Syntaxin 1A; coiled-coi 82.8 7.1 0.00024 26.3 7.6 45 148-192 10-54 (77)
29 2k1a_A Integrin alpha-IIB; sin 77.2 3.2 0.00011 25.0 3.7 21 217-237 18-38 (42)
30 2knc_A Integrin alpha-IIB; tra 74.6 2 6.8E-05 27.4 2.4 21 217-237 20-40 (54)
31 2l8s_A Integrin alpha-1; trans 74.3 2.1 7E-05 27.3 2.4 21 217-237 17-37 (54)
32 1rh5_B Preprotein translocase 71.7 3.4 0.00012 28.0 3.2 52 178-229 5-56 (74)
33 2fz0_A R-snare NYV1P, V-snare 71.2 4.5 0.00015 30.6 4.0 60 28-87 46-114 (149)
34 1sfc_A VAMP 2, protein (synapt 71.2 24 0.00083 24.8 8.8 52 155-206 30-81 (96)
35 2ww9_B Protein transport prote 70.5 4.6 0.00016 27.8 3.7 47 182-228 22-68 (80)
36 1n7s_A Vesicle-associated memb 69.2 20 0.00068 23.0 7.9 51 156-206 5-55 (63)
37 2nps_B Syntaxin 13, vesicle-as 69.0 22 0.00074 23.4 7.4 45 148-192 6-50 (71)
38 3b5n_A Synaptobrevin homolog 1 64.0 25 0.00087 22.4 7.9 51 156-206 3-53 (61)
39 2j3t_C Trafficking protein par 60.8 38 0.0013 25.5 7.7 57 33-91 46-107 (145)
40 3b5n_B Protein SSO1; snare com 58.7 35 0.0012 22.2 8.5 46 148-193 10-55 (69)
41 1t3j_A Mitofusin 1; coiled coi 56.4 50 0.0017 23.3 8.1 46 148-193 36-81 (96)
42 1n7s_B Syntaxin 1A; neuronal s 56.2 38 0.0013 21.9 7.4 45 148-192 12-56 (68)
43 1gl2_B Syntaxin 7; membrane pr 55.1 39 0.0013 21.7 7.1 45 148-192 9-53 (65)
44 2wwb_B SEC61gamma, protein tra 53.2 3 0.0001 27.8 0.1 47 181-227 7-53 (68)
45 2zxe_G FXYD10, phospholemman-l 51.9 19 0.00067 24.1 4.0 12 208-219 16-27 (74)
46 4a4y_A Protein MXIG; protein b 51.4 28 0.00096 25.0 5.0 45 3-59 83-127 (146)
47 1ccd_A Clara cell 17 KD protei 50.5 25 0.00086 23.7 4.5 44 131-174 21-64 (77)
48 3fym_A Putative uncharacterize 49.3 3.5 0.00012 30.6 0.0 25 207-231 101-125 (130)
49 1utg_A Uteroglobin; steroid bi 49.1 22 0.00076 23.5 4.0 44 131-174 19-62 (70)
50 3cue_C Transport protein parti 48.7 80 0.0027 24.1 7.8 57 33-91 52-113 (159)
51 2j3t_D Trafficking protein par 47.3 1.1E+02 0.0039 24.8 9.5 56 35-92 121-180 (219)
52 3mp7_B Preprotein translocase 47.3 10 0.00035 24.6 2.0 48 181-228 4-51 (61)
53 3j1r_A Archaeal adhesion filam 41.5 27 0.00091 18.5 2.7 16 215-230 10-25 (26)
54 3h3g_B Parathyroid hormone-rel 41.5 18 0.00063 18.8 2.0 12 200-211 5-16 (24)
55 3cue_A Transport protein parti 41.4 99 0.0034 25.2 7.5 48 45-92 119-189 (219)
56 1sfc_B Protein (syntaxin 1A), 39.2 86 0.0029 21.1 8.2 45 148-192 21-65 (83)
57 1utr_A Uteroglobin; clara cell 38.0 36 0.0012 23.9 3.9 44 131-174 40-83 (96)
58 2nps_A VAMP-4, vesicle-associa 36.5 90 0.0031 20.5 6.4 49 150-198 17-65 (74)
59 1urq_A M-tomosyn isoform; tran 35.4 89 0.003 20.1 7.2 49 149-197 12-60 (63)
60 2j3w_A Sedlin, trafficking pro 34.8 1.4E+02 0.0047 22.1 11.0 48 45-93 64-112 (142)
61 1nhl_A Synaptosomal-associated 31.4 93 0.0032 19.2 6.2 40 153-192 5-44 (54)
62 1pi7_A VPU protein, U ORF prot 31.2 47 0.0016 19.1 2.9 14 215-228 7-20 (36)
63 1gl2_A Endobrevin; membrane pr 29.6 1.1E+02 0.0038 19.5 6.8 51 155-205 9-59 (65)
64 1l4a_A Synaptobrevin; snare, s 29.2 37 0.0013 22.9 2.6 51 148-198 22-72 (80)
65 2ww9_B Protein transport prote 28.5 47 0.0016 22.7 3.0 46 175-220 8-56 (80)
66 2cly_A ATP synthase B chain, m 27.5 2.4E+02 0.0083 22.7 8.3 38 151-188 87-124 (214)
67 3lcn_C MRNA transport factor G 27.1 61 0.0021 17.4 2.6 22 147-168 5-26 (29)
68 3vmt_A Monofunctional glycosyl 26.7 29 0.00098 29.2 2.0 27 200-226 25-51 (263)
69 2ygg_A Sodium/hydrogen exchang 26.6 56 0.0019 21.7 3.0 23 154-176 6-28 (70)
70 2jp3_A FXYD domain-containing 26.4 70 0.0024 21.0 3.4 22 208-229 14-36 (67)
71 3arc_X Photosystem II PSBX pro 26.0 1E+02 0.0036 18.0 3.9 17 210-226 8-24 (39)
72 1txp_A HnRNP C, heterogeneous 25.4 54 0.0019 17.6 2.2 24 152-179 3-26 (28)
73 1zkr_A Major allergen I polype 25.2 93 0.0032 23.8 4.4 45 131-175 20-65 (153)
74 1spf_A Pulmonary surfactant-as 24.6 1E+02 0.0034 17.2 3.5 15 214-228 13-27 (35)
75 1dn1_B Syntaxin 1A, syntaxin b 24.0 48 0.0016 27.6 3.0 41 148-188 200-240 (267)
76 3bo0_B Preprotein translocase 23.1 90 0.0031 19.8 3.6 6 213-218 38-43 (65)
77 3bz1_X Photosystem II PSBX pro 22.3 1.4E+02 0.0046 18.4 3.9 19 210-228 18-36 (50)
78 2jwa_A Receptor tyrosine-prote 21.7 35 0.0012 20.6 1.2 7 216-222 14-20 (44)
79 1iij_A ERBB-2 receptor protein 21.6 77 0.0026 18.1 2.5 17 212-228 6-22 (35)
80 2jo1_A Phospholemman; FXYD1, N 21.3 95 0.0032 20.6 3.3 23 208-230 13-36 (72)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=2e-55 Score=364.18 Aligned_cols=189 Identities=34% Similarity=0.608 Sum_probs=148.6
Q ss_pred CccEEEEEEEcCCeEEEeecCCCCCHHHHHHHHHhcCCCCCCceEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHH
Q 026426 3 QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFL 82 (238)
Q Consensus 3 ~~~i~Ya~Iar~~~iLaey~~~~~~~~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL 82 (238)
.|+|+|||||||++|||||+..+|||..+|+++|+++|+.++|.+++.|+|.|||+.++|++|+||||++||+++||.||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 37899999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhccCCchhhhHHHHHHHHHHHhHh
Q 026426 83 ERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKG 162 (238)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~ 162 (238)
++|+++|...|+..+.++.++++ +.+|.+.|+++|++|+ ||.+.|++.+++++|+||++
T Consensus 81 ~~i~~eF~~~~~~~~~~~~~~~~--------------------~~~f~~~l~~~~~~y~-d~~~~d~l~~~~~~l~ev~~ 139 (189)
T 4b93_A 81 NEVKKRFQTTYGSRAQTALPYAM--------------------NSEFSSVLAAQLKHHS-ENKSLDKVMETQAQVDELKG 139 (189)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTT--------------------HHHHHHHHHHHHHHHH-CC-------CCHHHHHTTTT
T ss_pred HHHHHHHHhhccccccccCCccc--------------------cchhhHHHHHHHHhhh-cccchhhHHHHHHHHHHHHH
Confidence 99999999999877766666554 6889999999999994 67777999999999999999
Q ss_pred hhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhH
Q 026426 163 IMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQ 212 (238)
Q Consensus 163 im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k 212 (238)
||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||||+|
T Consensus 140 im~~Ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 140 IMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp CCEECCCCBCTTSSBCCCCEETTCC-------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999987
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=4.1e-47 Score=316.18 Aligned_cols=184 Identities=21% Similarity=0.423 Sum_probs=113.7
Q ss_pred cEEEEEEEcC--CeEEEeecCCC---CC----HHHHHHHHHhcCCC-CCCceEEEECCeEEEEEeeCCEEEEEEecCCCC
Q 026426 5 GLIYSFVSKG--TVVLAEHTSYS---GN----FSTIAIQCLQKLPA-SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVG 74 (238)
Q Consensus 5 ~i~Ya~Iar~--~~iLaey~~~~---~~----~~~~a~~il~k~~~-~~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~ 74 (238)
||+|+||||+ ++|||+|++.+ |+ |..+++.+++++|+ .+.|.+++.|+|.|||+.++|++|+||||++||
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 6999999999 89999998643 44 88999999999997 577999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhcccccc-ccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhccCCchhhhHHHHH
Q 026426 75 RSVPFVFLERVKDDFKQRYGASIQN-EESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKL 153 (238)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~p~~~dkl~~i 153 (238)
+++||.||++|+++|...|+..+.+ +.+++ +.+|++.|+++|++| +||.+.|++.++
T Consensus 82 ~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~---------------------~~~f~~~l~~~~~~y-~~~~~~d~l~~~ 139 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHGKKVPTVSRPYS---------------------FIEFDTFIQKTKKLY-IDSRARRNLGSI 139 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTCCSTTT---------------------TGGGHHHHHHHHTTT-SCCC--------
T ss_pred hHHHHHHHHHHHHHHHHhccchhccccCCCc---------------------hHHHHHHHHHHHHHh-cCccchhHHHHH
Confidence 9999999999999999999765543 23333 358999999999999 678878999999
Q ss_pred HHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 026426 154 KAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQN 210 (238)
Q Consensus 154 ~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~ 210 (238)
+++|+||++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||++
T Consensus 140 ~~~l~ev~~im~~ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 140 NTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp ---------CCEEEHHHHC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999985
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=2.4e-34 Score=239.18 Aligned_cols=176 Identities=23% Similarity=0.348 Sum_probs=146.8
Q ss_pred ccEEEEEEEc--C--CeEEEeecCCC----------CCHHH-HHHHHHhcCCCCCCceEEEECCeEEE-EEeeCCEEEEE
Q 026426 4 KGLIYSFVSK--G--TVVLAEHTSYS----------GNFST-IAIQCLQKLPASSSKYTYSCDGHTFN-FLLDSGFVFLV 67 (238)
Q Consensus 4 ~~i~Ya~Iar--~--~~iLaey~~~~----------~~~~~-~a~~il~k~~~~~~k~s~~~~~~~~~-~l~~~~~~~~~ 67 (238)
|.|++..|.+ + .++|+...+.+ ++|.. +++.+++++|++ +|.+++.|+|.|| |+.++|++|+|
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~-~r~s~~~~~y~fH~y~~~~gl~yl~ 80 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKG-SRASVKEQEYLCHVYVRSDSLAGVV 80 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTT-EEEEEECSSEEEEEEECTTSEEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCC-CeEEEEeCCEEEEEEEecCCEEEEE
Confidence 3477777776 2 24565443221 23443 567999999885 5999999999999 89999999999
Q ss_pred EecCCCCcccHHHHHHHHHHHHHhhhcc-ccccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhccCCchh
Q 026426 68 VADESVGRSVPFVFLERVKDDFKQRYGA-SIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEE 146 (238)
Q Consensus 68 i~d~~~~~~~af~fL~~i~~~f~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~p~~ 146 (238)
+||++||+++||.||++|+++|...|+. .+......++ .| +.|+++|++| +||.+
T Consensus 81 itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~----------------------~f-~~l~~~m~~Y-~dp~~ 136 (199)
T 3kyq_A 81 IADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATI----------------------HY-TALDGHLSRY-QNPRE 136 (199)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTC----------------------CC-CTHHHHHHHT-TSGGG
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccc----------------------cc-HHHHHHHHHh-CCchh
Confidence 9999999999999999999999999964 3433333332 35 6899999999 68988
Q ss_pred hhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHH
Q 026426 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRR 204 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~ 204 (238)
.|++.+++++|+||++||.+||+++|+|||+||.|++||++|+.+|..|+++|+++++
T Consensus 137 ~d~l~~~q~el~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 137 ADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp CCCCHHHHHHHHTCCCEEESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999999999999985
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.8e-31 Score=217.00 Aligned_cols=120 Identities=29% Similarity=0.558 Sum_probs=113.1
Q ss_pred CccEEEEEEEcCCeEEEeecCCCCCHHHHHHHHHhcCCCCCCceEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHH
Q 026426 3 QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFL 82 (238)
Q Consensus 3 ~~~i~Ya~Iar~~~iLaey~~~~~~~~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL 82 (238)
+|+|+|||||||++|||||+..+|||..+|++||+++|+.+.|.+++.++|.|||+.++|++|+||||++||+++||.||
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 46799999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhccC
Q 026426 83 ERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMS 142 (238)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~ 142 (238)
++|+++|...|+.++.++.++++ +.+|++.|+++|++||+
T Consensus 133 edI~~eF~~~yg~~~~ta~pya~--------------------~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYGSRAQTALPYAM--------------------NSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTT--------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhccCcch--------------------hHHHHHHHHHHHHHhcC
Confidence 99999999999888877777776 78999999999999963
No 5
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.96 E-value=1.7e-29 Score=184.69 Aligned_cols=88 Identities=32% Similarity=0.569 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026426 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFII 226 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~ 226 (238)
.|++.+++++++||+++|.+|++++++|||+||.|++||++|+.+|..|+++|++++|+|||||+|++++++++++++++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhC
Q 026426 227 IVWLVACG 234 (238)
Q Consensus 227 iI~~~~c~ 234 (238)
+|++++|.
T Consensus 84 ii~~~~~~ 91 (91)
T 3hd7_A 84 IIIVYFST 91 (91)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhC
Confidence 99999993
No 6
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.95 E-value=1.9e-27 Score=192.68 Aligned_cols=121 Identities=29% Similarity=0.555 Sum_probs=105.1
Q ss_pred CccEEEEEEEcCCeEEEeecCCCCCHHHHHHHHHhcCCCCCCceEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHH
Q 026426 3 QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFL 82 (238)
Q Consensus 3 ~~~i~Ya~Iar~~~iLaey~~~~~~~~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL 82 (238)
+|.|+|+||+||++||+||++..+||..+++.+++++|+.+.|.+++.|+|.|||+.+||++|+||||++||+++||.||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 36799999999999999999989999999999999999977799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhccCC
Q 026426 83 ERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSH 143 (238)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~ 143 (238)
++|+++|...|+..+.++.++++ ..+|++.|++.|++|+++
T Consensus 123 edI~~eF~~~y~~~~~~a~pysf--------------------~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYGSRAQTALPYAM--------------------NSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHTTGGGTCCTTTT--------------------HHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhhhhhhccCCcch--------------------hHHHHHHHHHHHHHhcCc
Confidence 99999999999877666555554 568999999999999643
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.94 E-value=9.2e-29 Score=188.95 Aligned_cols=89 Identities=30% Similarity=0.539 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026426 146 EMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFI 225 (238)
Q Consensus 146 ~~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii 225 (238)
+.|++.+++++|+||+++|.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||||+|+++++++++++++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii 110 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 110 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 026426 226 IIVWLVACG 234 (238)
Q Consensus 226 ~iI~~~~c~ 234 (238)
++|++++|.
T Consensus 111 ~iIi~~~c~ 119 (119)
T 2kog_A 111 IIIIVYFST 119 (119)
T ss_dssp HHHHHHHHC
T ss_pred HHhhhheeC
Confidence 999999993
No 8
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.88 E-value=1.2e-23 Score=147.95 Aligned_cols=72 Identities=38% Similarity=0.660 Sum_probs=62.3
Q ss_pred CchhhhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 026426 143 HPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMK 214 (238)
Q Consensus 143 ~p~~~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~ 214 (238)
+|.+.|++.+++.+|++|++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++++|+|||+|+|++
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 566679999999999999999999999999999999999999999999999999999999999999999974
No 9
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.88 E-value=4.7e-22 Score=157.28 Aligned_cols=123 Identities=12% Similarity=0.169 Sum_probs=97.4
Q ss_pred ccEEEEEEEcC----CeEEEeecCCC----------CCH-HHHHHHHHhcCCCCCCceEEEECCeEEEEE-eeCCEEEEE
Q 026426 4 KGLIYSFVSKG----TVVLAEHTSYS----------GNF-STIAIQCLQKLPASSSKYTYSCDGHTFNFL-LDSGFVFLV 67 (238)
Q Consensus 4 ~~i~Ya~Iar~----~~iLaey~~~~----------~~~-~~~a~~il~k~~~~~~k~s~~~~~~~~~~l-~~~~~~~~~ 67 (238)
|.|+|++|+|+ .++|+++++.+ ++| ..+++++++++|++ .|.+++.++|.|||+ .++|++|+|
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~-~R~sv~~~~y~fH~~~~~~gl~~l~ 83 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-QRQSIEEGNYIGHVYARSEGICGVL 83 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT-EEEEEEETTEEEEEEECTTSEEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC-ceEEEEeCCEEEEEEEecCCEEEEE
Confidence 56788879997 78999987755 444 67899999999986 599999999999999 789999999
Q ss_pred EecCCCCcccHHHHHHHHHHHHHhhhccc-cccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhccCCchh
Q 026426 68 VADESVGRSVPFVFLERVKDDFKQRYGAS-IQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEE 146 (238)
Q Consensus 68 i~d~~~~~~~af~fL~~i~~~f~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~p~~ 146 (238)
|||++||+++||.||++|+++|...|+.. +.+... .. + ...| +.|++.|++| +||.+
T Consensus 84 i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~-~~------------------~-~~~f-~~l~~~i~kY-qdp~~ 141 (144)
T 3bw6_A 84 ITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTE-TN------------------D-ALKM-KQLDTYISKY-QDPSQ 141 (144)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSS-CC------------------G-GGCC-THHHHHHHHT-SCC--
T ss_pred EECCCCChhHHHHHHHHHHHHHHHHccchhhhhccc-cc------------------C-Ccch-HHHHHHHHHh-Cchhh
Confidence 99999999999999999999999999765 544221 00 0 1234 7899999999 78988
Q ss_pred hhH
Q 026426 147 MSK 149 (238)
Q Consensus 147 ~dk 149 (238)
+|+
T Consensus 142 aD~ 144 (144)
T 3bw6_A 142 ADA 144 (144)
T ss_dssp ---
T ss_pred cCC
Confidence 775
No 10
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.87 E-value=2.6e-22 Score=147.73 Aligned_cols=68 Identities=35% Similarity=0.613 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 026426 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMK 214 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~ 214 (238)
.|++.+++.+|++|++||.+||+++|+|||+|+.|++||++|+..|..|+++|++++|+|||+|+|++
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 49999999999999999999999999999999999999999999999999999999999999999975
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.86 E-value=4.1e-23 Score=147.31 Aligned_cols=71 Identities=34% Similarity=0.579 Sum_probs=62.7
Q ss_pred CchhhhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 026426 143 HPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQM 213 (238)
Q Consensus 143 ~p~~~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~ 213 (238)
+|.+.|++.+++.+|++|++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++++|+|||+|+|+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566999999999999999999999999999999999999999999999999999999999999999985
No 12
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.79 E-value=1.8e-19 Score=122.80 Aligned_cols=61 Identities=34% Similarity=0.613 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHH
Q 026426 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMW 207 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~w 207 (238)
.|++.+++.+|++|++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++++|+||
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3999999999999999999999999999999999999999999999999999999999998
No 13
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.79 E-value=2.2e-19 Score=121.55 Aligned_cols=60 Identities=43% Similarity=0.782 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMW 207 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~w 207 (238)
|++.+++.+|++|++||.+||+++|+|||+|+.|+++|++|+..|..|+++|++++|+||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 799999999999999999999999999999999999999999999999999999999999
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.72 E-value=6.9e-18 Score=115.53 Aligned_cols=62 Identities=29% Similarity=0.575 Sum_probs=52.8
Q ss_pred CchhhhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHH
Q 026426 143 HPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRR 204 (238)
Q Consensus 143 ~p~~~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~ 204 (238)
+|.+.|++.+++.+|++|++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++|+|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46667999999999999999999999999999999999999999999999999999999986
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.57 E-value=3.7e-15 Score=100.82 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRM 206 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ 206 (238)
.++.+++.++++|+++|.+|++++++|||+|+.|+++|++|..+|..|.+.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999875
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=97.97 E-value=2.1e-08 Score=60.67 Aligned_cols=30 Identities=40% Similarity=0.536 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHhHhhhhhhHHHHHHhhh
Q 026426 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGE 176 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni~~il~Rge 176 (238)
.|++.+++.+|++|++||.+||+++|+||+
T Consensus 8 ~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 8 NRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 489999999999999999999999999996
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=97.59 E-value=2.1e-05 Score=69.00 Aligned_cols=32 Identities=38% Similarity=0.771 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHhHhhhhhhHHHHHHhhhHH
Q 026426 147 MSKLSKLKAQITEVKGIMMDNIEKVLDRGERI 178 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni~~il~Rge~L 178 (238)
.|++.++|++++||++||.+||+++++|||+|
T Consensus 279 ~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 48999999999999999999999999999986
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.48 E-value=0.005 Score=45.58 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQA 192 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s 192 (238)
+.+.++++.+.|+.+++.+=-..+-+.|+.+|.++...++-..+.
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v 65 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 65 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 678899999999999998887888899999999998877766444
No 19
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.22 E-value=0.0008 Score=54.44 Aligned_cols=88 Identities=18% Similarity=0.308 Sum_probs=64.1
Q ss_pred EEEEEEcCCeEEEeecCCCC----CHHHHHHHHHhcCCCCCCceEEEECCeEEEEEeeC--CEEEEEEecCCCCcccHHH
Q 026426 7 IYSFVSKGTVVLAEHTSYSG----NFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDS--GFVFLVVADESVGRSVPFV 80 (238)
Q Consensus 7 ~Ya~Iar~~~iLaey~~~~~----~~~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~~--~~~~~~i~d~~~~~~~af~ 80 (238)
+++.+.+|++||..|+.... ....+.+.++=.-..+ ..+++.|+|+..+..++ +++|++|-..-.....+=.
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 57788999999999954322 2456666665332322 24588899999998876 7999999888888888889
Q ss_pred HHHHHHHHHHhhhccc
Q 026426 81 FLERVKDDFKQRYGAS 96 (238)
Q Consensus 81 fL~~i~~~f~~~~~~~ 96 (238)
||+.++..|...|+..
T Consensus 91 LL~~v~~~Fv~~Y~~~ 106 (185)
T 2fh5_A 91 LIDDVHRLFRDKYRTE 106 (185)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999543
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=95.26 E-value=0.39 Score=34.01 Aligned_cols=50 Identities=10% Similarity=0.203 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQR 197 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~ 197 (238)
+.++.++.-+.+.-+-+.+.-+++-+=.++-+.|...|.....+|...++
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~r 61 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 61 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544555555555555555566667777777777766654
No 21
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.42 E-value=1.1 Score=34.73 Aligned_cols=90 Identities=9% Similarity=0.114 Sum_probs=58.7
Q ss_pred cEEEEEEE--cCCeEEEee-cCCCCCHH-HHHHHHHhcCCC--CCCceEEEECCeEEEEEeeCCEEEEEEecCCCCcccH
Q 026426 5 GLIYSFVS--KGTVVLAEH-TSYSGNFS-TIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVP 78 (238)
Q Consensus 5 ~i~Ya~Ia--r~~~iLaey-~~~~~~~~-~~a~~il~k~~~--~~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~a 78 (238)
||....|. +|.++|+-| ......++ .+.+.+.+++.. ....-.++.+++.|.|...+++.|+|+++.+...-..
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~ 80 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT 80 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 45666665 356666664 43332222 222222222211 1112356778999989888999999999999999899
Q ss_pred HHHHHHHHHHHHhhhc
Q 026426 79 FVFLERVKDDFKQRYG 94 (238)
Q Consensus 79 f~fL~~i~~~f~~~~~ 94 (238)
+.||..+.+.+..-++
T Consensus 81 le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 81 LELIHRYVELLDKYFG 96 (158)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999888877664
No 22
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=92.06 E-value=1.5 Score=33.32 Aligned_cols=49 Identities=6% Similarity=0.074 Sum_probs=42.4
Q ss_pred eEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhc
Q 026426 46 YTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYG 94 (238)
Q Consensus 46 ~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (238)
-.+..+++.|.|...+++.|+++++.+...-..+.||..+.+.+..-++
T Consensus 48 ~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4567789999998889999999999999999999999999888876664
No 23
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=91.34 E-value=4 Score=31.45 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=62.0
Q ss_pred cEEEEEEE--cCCeEEEeecCCC-CCH---HHHHHHHHhcCCCCCCceEEEECCeEEEEEeeCCEEEEEEecCCCCcccH
Q 026426 5 GLIYSFVS--KGTVVLAEHTSYS-GNF---STIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVP 78 (238)
Q Consensus 5 ~i~Ya~Ia--r~~~iLaey~~~~-~~~---~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~a 78 (238)
||.+.+|- +|.++|+.|=... ++. ....+.+.+++...+ .-....+++.+.|....++.|+++++.+...-..
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 57777776 4678888763321 222 112233333333222 2466779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 026426 79 FVFLERVKDDFKQRY 93 (238)
Q Consensus 79 f~fL~~i~~~f~~~~ 93 (238)
+.||..+.+.+...+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888777
No 24
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=89.19 E-value=4.9 Score=29.12 Aligned_cols=8 Identities=50% Similarity=0.883 Sum_probs=3.4
Q ss_pred HhhhhhhH
Q 026426 161 KGIMMDNI 168 (238)
Q Consensus 161 ~~im~~ni 168 (238)
++-|.++|
T Consensus 47 Qge~Id~I 54 (109)
T 3hd7_B 47 QGEMIDRI 54 (109)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 34444444
No 25
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=87.32 E-value=2.6 Score=37.88 Aligned_cols=91 Identities=13% Similarity=0.185 Sum_probs=59.0
Q ss_pred ccEEEEEEEc--CCeEEEe-ecCC-CCC-HHHHHHHHHhcCCCCCCceEEEECCeEEEEEeeCCEEEEEEecCCCCcccH
Q 026426 4 KGLIYSFVSK--GTVVLAE-HTSY-SGN-FSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVP 78 (238)
Q Consensus 4 ~~i~Ya~Iar--~~~iLae-y~~~-~~~-~~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~a 78 (238)
|||...+|.. |..+|+- |... ..+ .+..-+.++.+.......-.+..+++.|.|...+++.|+|+++.+...-..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 4677777763 3445544 3322 222 223333444332211112356778999999889999999999999998899
Q ss_pred HHHHHHHHHHHHhhhc
Q 026426 79 FVFLERVKDDFKQRYG 94 (238)
Q Consensus 79 f~fL~~i~~~f~~~~~ 94 (238)
+.||..+.+.+...++
T Consensus 81 le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 81 FSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988876664
No 26
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=87.20 E-value=8.8 Score=34.48 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=42.8
Q ss_pred eEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhc
Q 026426 46 YTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYG 94 (238)
Q Consensus 46 ~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (238)
-.+..+++.|.|...+++.|+|+++.+...-..+.||..+.+.+...++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4567789999998899999999999999988999999999988877664
No 27
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=86.61 E-value=0.11 Score=38.79 Aligned_cols=52 Identities=10% Similarity=0.179 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQG 199 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a 199 (238)
+.++.++.-+.+.-+-+.+.-+++-+=.++-+.|.+.|.....+|...+++.
T Consensus 40 ~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkm 91 (119)
T 2kog_A 40 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665555555555555556666677888888888887776544
No 28
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=82.79 E-value=7.1 Score=26.28 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQA 192 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s 192 (238)
+.+.+++..+.++.+++.+=-..+.+.|+.|+.++...+.-..+.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 54 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 678899999999999999888888999999999887776665433
No 29
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=77.23 E-value=3.2 Score=24.96 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCC
Q 026426 217 VGGAVIAFIIIVWLVACGGFK 237 (238)
Q Consensus 217 i~~vv~~ii~iI~~~~c~gf~ 237 (238)
+++++++.+++..++-||-||
T Consensus 18 l~GLllL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 18 LGGLLLLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHcCccc
Confidence 444455555666688997664
No 30
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=74.57 E-value=2 Score=27.37 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCC
Q 026426 217 VGGAVIAFIIIVWLVACGGFK 237 (238)
Q Consensus 217 i~~vv~~ii~iI~~~~c~gf~ 237 (238)
+++++++.+++.+++-||-||
T Consensus 20 l~GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 20 LGGLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccc
Confidence 444555555666788997664
No 31
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=74.28 E-value=2.1 Score=27.28 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCC
Q 026426 217 VGGAVIAFIIIVWLVACGGFK 237 (238)
Q Consensus 217 i~~vv~~ii~iI~~~~c~gf~ 237 (238)
+++++++.+++.+++-||-||
T Consensus 17 l~GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 17 FAGLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccc
Confidence 444555555666688997664
No 32
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=71.71 E-value=3.4 Score=28.04 Aligned_cols=52 Identities=4% Similarity=-0.030 Sum_probs=31.4
Q ss_pred HHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026426 178 IELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVW 229 (238)
Q Consensus 178 L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI~ 229 (238)
++.+.+...+.-.++.+|-+.++|=.|+-.++..|...+..+++.++-|+|-
T Consensus 5 ~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 5 FNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp -------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666777888888888888888888877665555555544443
No 33
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=71.20 E-value=4.5 Score=30.64 Aligned_cols=60 Identities=17% Similarity=0.290 Sum_probs=42.7
Q ss_pred HHHHH-HHHHhcCCCC-CCce---EEE-ECCeEEEEEe---eCCEEEEEEecCCCCcccHHHHHHHHHH
Q 026426 28 FSTIA-IQCLQKLPAS-SSKY---TYS-CDGHTFNFLL---DSGFVFLVVADESVGRSVPFVFLERVKD 87 (238)
Q Consensus 28 ~~~~a-~~il~k~~~~-~~k~---s~~-~~~~~~~~l~---~~~~~~~~i~d~~~~~~~af~fL~~i~~ 87 (238)
|..+. ..++.++-+- .+|. +.. .+||-.+|.. +++-+|+|.+..+.|+-++...|.+++.
T Consensus 46 Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 46 FHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 44433 3345555443 2343 333 3899988876 3578999999999999999999999976
No 34
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=71.17 E-value=24 Score=24.83 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=25.6
Q ss_pred HHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHH
Q 026426 155 AQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRM 206 (238)
Q Consensus 155 ~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ 206 (238)
..+..++.-+.+..+-+.++-+++-+=-++-+.|.+.|..+...|.+.++..
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A 81 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555444444455555555555555555544443
No 35
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=70.54 E-value=4.6 Score=27.78 Aligned_cols=47 Identities=9% Similarity=-0.033 Sum_probs=30.2
Q ss_pred HHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026426 182 VDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIV 228 (238)
Q Consensus 182 ~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI 228 (238)
.+...+.-.++.+|-+.++|=.|+-+++..|...+..+++.++.|+|
T Consensus 22 ~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 22 VEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566677777777778888888887776555555555553
No 36
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=69.16 E-value=20 Score=23.02 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHH
Q 026426 156 QITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRM 206 (238)
Q Consensus 156 ~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ 206 (238)
.+..++.-+.+..+-+.++-+++-.=-++-+.|.+.|..+...|...++..
T Consensus 5 ~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a 55 (63)
T 1n7s_A 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555666666665555666666666666666666666554
No 37
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=68.99 E-value=22 Score=23.40 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQA 192 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s 192 (238)
..+.+++..+.++.+++.+=-..+.+.|+.|+.++...+.-....
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 50 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHV 50 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 678899999999999999888888899999999998777666444
No 38
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=63.99 E-value=25 Score=22.38 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=28.6
Q ss_pred HHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHH
Q 026426 156 QITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRM 206 (238)
Q Consensus 156 ~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ 206 (238)
++..++.-+.+..+-+.++-+++-.=.++-+.|.+.|..+...|...++..
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a 53 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555556666666666666555544
No 39
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=60.82 E-value=38 Score=25.54 Aligned_cols=57 Identities=11% Similarity=0.164 Sum_probs=40.6
Q ss_pred HHHHhcCCCC---CCceEEEECCeEEEEEe-eCCEEEEEEecCCCCcccHHHHHHHHH-HHHHh
Q 026426 33 IQCLQKLPAS---SSKYTYSCDGHTFNFLL-DSGFVFLVVADESVGRSVPFVFLERVK-DDFKQ 91 (238)
Q Consensus 33 ~~il~k~~~~---~~k~s~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~~i~-~~f~~ 91 (238)
..+.+++.|. ....+++.+.+..|+.. -.|+=|+.++|+..+ ..-.||++|. +.|.+
T Consensus 46 ~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~ 107 (145)
T 2j3t_C 46 RSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVG--PIRDVLHHIYSALYVE 107 (145)
T ss_dssp HHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCC--CCHHHHHHHHHTTHHH
T ss_pred HHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcc--hHHHHHHHHHHHHHHH
Confidence 3355665553 33567777888777655 579999999998744 4778999999 56655
No 40
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=58.66 E-value=35 Score=22.24 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQAD 193 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~ 193 (238)
+.+.++.+.+.++.+++.+=-..+.+.|+.|+.++...+.-.....
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 55 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVE 55 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999888899999999999977776665443
No 41
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=56.45 E-value=50 Score=23.35 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQAD 193 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~ 193 (238)
.-...+..+|++++.-|.+-|+.+-..=..||.+..++..|...|.
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~ 81 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAV 81 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4556788999999999999998888888888777655555544443
No 42
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=56.24 E-value=38 Score=21.94 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQA 192 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s 192 (238)
+.+.++++.+.++.+++.+=-..+.+.|+.|+.++...+.-..+.
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 56 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 56 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 678899999999999999988889999999999987766665544
No 43
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=55.10 E-value=39 Score=21.72 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQA 192 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s 192 (238)
..+.++++.+.++.+++.+=-..+-+.|+.|+.++...+.-....
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 53 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999888888899999999987776665544
No 44
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=53.16 E-value=3 Score=27.85 Aligned_cols=47 Identities=4% Similarity=-0.027 Sum_probs=29.8
Q ss_pred hHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026426 181 LVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIII 227 (238)
Q Consensus 181 L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~i 227 (238)
+.+...+.-.++.+|-+.++|=.|+-.++..|...+..+++-++-|+
T Consensus 7 ~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 7 FVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp SSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677777777777777888777766555544444444
No 45
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=51.92 E-value=19 Score=24.13 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=5.7
Q ss_pred HHHhHHHHHHHH
Q 026426 208 LQNLQMKLMVGG 219 (238)
Q Consensus 208 w~~~k~~iii~~ 219 (238)
|...++.-++.+
T Consensus 16 Y~tLRigGLifA 27 (74)
T 2zxe_G 16 YYRLRVVGLIVA 27 (74)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHheeccchhH
Confidence 455555543333
No 46
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=51.37 E-value=28 Score=25.01 Aligned_cols=45 Identities=22% Similarity=0.462 Sum_probs=33.9
Q ss_pred CccEEEEEEEcCCeEEEeecCCCCCHHHHHHHHHhcCCCCCCceEEEECCeEEEEEe
Q 026426 3 QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLL 59 (238)
Q Consensus 3 ~~~i~Ya~Iar~~~iLaey~~~~~~~~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~ 59 (238)
.+.|+|..|++++. |++++..|. ++.-+...-+++++|.+||..-
T Consensus 83 sdgiiyltiskdni--cqfsdekge----------qidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 83 SDGIIYLTISKDNI--CQFSDEKGE----------QIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp SCEEEEEEECTTCC--EEEECTTSC----------EECCCSSSSEEEETTEEEEEEE
T ss_pred CCcEEEEEEecCcc--eecccccCc----------EeeccccccceeecceEeehhc
Confidence 45699999999986 789887653 3444444568999999999854
No 47
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=50.48 E-value=25 Score=23.71 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=33.2
Q ss_pred hhHHHHhhhccCCchhhhHHHHHHHHHHHhHhhhhhhHHHHHHh
Q 026426 131 PRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDR 174 (238)
Q Consensus 131 ~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~im~~ni~~il~R 174 (238)
+..+..++.|+.+|...+...++++=++....-=+.|+.+++++
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34666778887777777888888888887777777788777654
No 48
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=49.32 E-value=3.5 Score=30.56 Aligned_cols=25 Identities=12% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 026426 207 WLQNLQMKLMVGGAVIAFIIIVWLV 231 (238)
Q Consensus 207 ww~~~k~~iii~~vv~~ii~iI~~~ 231 (238)
.++.+.+.++++++++++++++|+.
T Consensus 101 ~~~~~~~~~i~~~~~i~i~~~~~~~ 125 (130)
T 3fym_A 101 KSKEPIQLLVIMGITVLITLLLWIM 125 (130)
T ss_dssp -------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 49
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=49.14 E-value=22 Score=23.47 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=32.6
Q ss_pred hhHHHHhhhccCCchhhhHHHHHHHHHHHhHhhhhhhHHHHHHh
Q 026426 131 PRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDR 174 (238)
Q Consensus 131 ~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~im~~ni~~il~R 174 (238)
+.....++.|+.+|...+...++++=++....-=+.|+.+++++
T Consensus 19 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566778887777777888888888887777777778777654
No 50
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=48.73 E-value=80 Score=24.15 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=41.1
Q ss_pred HHHHhcCCCCC---CceEEEECCeEEEEEe-eCCEEEEEEecCCCCcccHHHHHHHHHH-HHHh
Q 026426 33 IQCLQKLPASS---SKYTYSCDGHTFNFLL-DSGFVFLVVADESVGRSVPFVFLERVKD-DFKQ 91 (238)
Q Consensus 33 ~~il~k~~~~~---~k~s~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~~i~~-~f~~ 91 (238)
+.+.+++.|.+ .-..++.+.|..|+.. -.|+-|++++|+..+ ..-.+|++|.. .|.+
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVK 113 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHH
Confidence 44566766543 3456666888887765 469999999998743 56788999997 6665
No 51
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=47.32 E-value=1.1e+02 Score=24.78 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=41.1
Q ss_pred HHhcCCCCC---CceEEEECCeEEEEEe-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHhh
Q 026426 35 CLQKLPASS---SKYTYSCDGHTFNFLL-DSGFVFLVVADESVGRSVPFVFLERVKDDFKQR 92 (238)
Q Consensus 35 il~k~~~~~---~k~s~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~ 92 (238)
+.+++.|.+ .-.+++.+.+..|+.. -.|+-|++++|+. ....-.||++|.+.|.+.
T Consensus 121 i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~ 180 (219)
T 2j3t_D 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDF 180 (219)
T ss_dssp HHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHH
Confidence 445665532 3467778888887665 5699999999986 446789999999877664
No 52
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=47.30 E-value=10 Score=24.58 Aligned_cols=48 Identities=2% Similarity=-0.065 Sum_probs=29.5
Q ss_pred hHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026426 181 LVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIV 228 (238)
Q Consensus 181 L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI 228 (238)
+.+...+.-.++.+|-+.++|=.|+-..+..|...+..+++-++-|+|
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLI 51 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556667777777777777778777777766555555544444
No 53
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=41.52 E-value=27 Score=18.47 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 026426 215 LMVGGAVIAFIIIVWL 230 (238)
Q Consensus 215 iii~~vv~~ii~iI~~ 230 (238)
+|+..+...+++.+|+
T Consensus 10 LIviav~aaVllylW~ 25 (26)
T 3j1r_A 10 LILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444455555554
No 54
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=41.47 E-value=18 Score=18.84 Aligned_cols=12 Identities=50% Similarity=1.002 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHh
Q 026426 200 RQLRRRMWLQNL 211 (238)
Q Consensus 200 ~~l~~~~ww~~~ 211 (238)
..++|+||..+.
T Consensus 5 Q~~rRr~wL~~l 16 (24)
T 3h3g_B 5 QDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 568899999874
No 55
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=41.41 E-value=99 Score=25.16 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=34.2
Q ss_pred ceEEEECCeEEEEEe-eCCEEEEEEecCCCCc----------------------ccHHHHHHHHHHHHHhh
Q 026426 45 KYTYSCDGHTFNFLL-DSGFVFLVVADESVGR----------------------SVPFVFLERVKDDFKQR 92 (238)
Q Consensus 45 k~s~~~~~~~~~~l~-~~~~~~~~i~d~~~~~----------------------~~af~fL~~i~~~f~~~ 92 (238)
-..+..+.+..|+.. -.|+=|++++|+..+. ...-.||.+|.+.|.+.
T Consensus 119 ~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~ 189 (219)
T 3cue_A 119 LRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDY 189 (219)
T ss_dssp CCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 356666777776554 5799999999987633 34678888888777653
No 56
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=39.23 E-value=86 Score=21.07 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQA 192 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s 192 (238)
..+.++...+.++.+++.+=-..+.+.|+.|+.++...+.-....
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 65 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 678899999999999999888888899999999987776665444
No 57
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=38.02 E-value=36 Score=23.85 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=33.0
Q ss_pred hhHHHHhhhccCCchhhhHHHHHHHHHHHhHhhhhhhHHHHHHh
Q 026426 131 PRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDR 174 (238)
Q Consensus 131 ~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~im~~ni~~il~R 174 (238)
+..+..++.|+.+|...+...++|+=+++....-+.|+.+++++
T Consensus 40 ~~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 40 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp SHHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566677887777777788888888887777777788777654
No 58
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=36.46 E-value=90 Score=20.51 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHh
Q 026426 150 LSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQ 198 (238)
Q Consensus 150 l~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~ 198 (238)
+..++.-+.+.-+-+.+.-+++-.=.++-+.|...|......|...++.
T Consensus 17 l~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 65 (74)
T 2nps_A 17 VDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 65 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433333333344444444444555556677777777777766654
No 59
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=35.35 E-value=89 Score=20.10 Aligned_cols=49 Identities=12% Similarity=0.172 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHH
Q 026426 149 KLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQR 197 (238)
Q Consensus 149 kl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~ 197 (238)
.+..+...+.+..+-+.+.-+++-.=.++-+.|.+.+++.+..|..+++
T Consensus 12 qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 12 AASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555566666777777777777766654
No 60
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=34.82 E-value=1.4e+02 Score=22.13 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=34.1
Q ss_pred ceEEEECCeEEEEEe-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhh
Q 026426 45 KYTYSCDGHTFNFLL-DSGFVFLVVADESVGRSVPFVFLERVKDDFKQRY 93 (238)
Q Consensus 45 k~s~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~ 93 (238)
..+...+++..|+.. -.|+=|+.++|+. .....-.||++|.+.|.+..
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v 112 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFA 112 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHh
Confidence 355566777776554 5799999999973 23356788999998776643
No 61
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=31.41 E-value=93 Score=19.15 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=30.5
Q ss_pred HHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHH
Q 026426 153 LKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQA 192 (238)
Q Consensus 153 i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s 192 (238)
...-..+..++-.+.+..+...||.|+...+.-++.....
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l 44 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHH
Confidence 4556678888888999999999999998776665555443
No 62
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=31.22 E-value=47 Score=19.07 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 026426 215 LMVGGAVIAFIIIV 228 (238)
Q Consensus 215 iii~~vv~~ii~iI 228 (238)
.++++++.+++.++
T Consensus 7 ~ivalivalIiaIV 20 (36)
T 1pi7_A 7 AIVALVVAIIIAIV 20 (36)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445444444433
No 63
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=29.61 E-value=1.1e+02 Score=19.50 Aligned_cols=51 Identities=8% Similarity=0.162 Sum_probs=25.2
Q ss_pred HHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHH
Q 026426 155 AQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRR 205 (238)
Q Consensus 155 ~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~ 205 (238)
..+..++.-+.+..+-+.++-+++-.=-++-+.|.+.|..+...|...++.
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~ 59 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTT 59 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444454555544444445555555555555555555443
No 64
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=29.25 E-value=37 Score=22.91 Aligned_cols=51 Identities=10% Similarity=0.207 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHh
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQ 198 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~ 198 (238)
+.+..++.-+.+.-+-+.+.-+++-.=.++-+.|...|......|...++.
T Consensus 22 ~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk 72 (80)
T 1l4a_A 22 AQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666777778888888888888877654
No 65
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=28.50 E-value=47 Score=22.65 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=15.0
Q ss_pred hhHHHHhHHhhhhHHHHHHHHHHhHHHHHHH---HHHHHhHHHHHHHHH
Q 026426 175 GERIELLVDKTENLQFQADSFQRQGRQLRRR---MWLQNLQMKLMVGGA 220 (238)
Q Consensus 175 ge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~---~ww~~~k~~iii~~v 220 (238)
|++.+...++.+.+.+....|.++++++=++ -=|+-|.-.+-+.++
T Consensus 8 ~~~~~~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~i 56 (80)
T 2ww9_B 8 GEEKKQSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGI 56 (80)
T ss_dssp -------------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3333334444444555555666555444322 234444444444333
No 66
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=27.48 E-value=2.4e+02 Score=22.69 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=17.0
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhH
Q 026426 151 SKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENL 188 (238)
Q Consensus 151 ~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L 188 (238)
.++.+.++++++.=.+.++..++....+....+.+..|
T Consensus 87 ~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~L 124 (214)
T 2cly_A 87 EQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYL 124 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444
No 67
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=27.06 E-value=61 Score=17.40 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHhHhhhhhhH
Q 026426 147 MSKLSKLKAQITEVKGIMMDNI 168 (238)
Q Consensus 147 ~dkl~~i~~~v~~v~~im~~ni 168 (238)
.+|+.-++.+++|-+.|..++-
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~~ 26 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKTH 26 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4788889999999888877653
No 68
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=26.65 E-value=29 Score=29.20 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026426 200 RQLRRRMWLQNLQMKLMVGGAVIAFII 226 (238)
Q Consensus 200 ~~l~~~~ww~~~k~~iii~~vv~~ii~ 226 (238)
.+-.++.|+++.-.+++++++++++++
T Consensus 25 ~~~~kk~~~~~~~~~~~~~~l~~~~~~ 51 (263)
T 3vmt_A 25 GKPPKKKKSKRILLKILLTILIIIALF 51 (263)
T ss_dssp ----------CCTTHHHHHHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344456677766555555444444433
No 69
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=26.64 E-value=56 Score=21.69 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.4
Q ss_pred HHHHHHhHhhhhhhHHHHHHhhh
Q 026426 154 KAQITEVKGIMMDNIEKVLDRGE 176 (238)
Q Consensus 154 ~~~v~~v~~im~~ni~~il~Rge 176 (238)
..+++++++|+..|+.++-+|.-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45789999999999999988754
No 70
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=26.40 E-value=70 Score=21.00 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=9.4
Q ss_pred HHHhHHHH-HHHHHHHHHHHHHH
Q 026426 208 LQNLQMKL-MVGGAVIAFIIIVW 229 (238)
Q Consensus 208 w~~~k~~i-ii~~vv~~ii~iI~ 229 (238)
|...++.- ++++|++++-++|+
T Consensus 14 Y~tLRigGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 14 WESLQLGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHheecchhhHHHHHHHHHHHH
Confidence 44455543 34444443333333
No 71
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=25.98 E-value=1e+02 Score=17.95 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=8.0
Q ss_pred HhHHHHHHHHHHHHHHH
Q 026426 210 NLQMKLMVGGAVIAFII 226 (238)
Q Consensus 210 ~~k~~iii~~vv~~ii~ 226 (238)
|+-+=++.+++|++++.
T Consensus 8 nFl~Sl~aG~vvvv~i~ 24 (39)
T 3arc_X 8 GFFIGLLSGAVVLGLTF 24 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555444443
No 72
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=25.37 E-value=54 Score=17.62 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=14.4
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHhhhHHH
Q 026426 152 KLKAQITEVKGIMMDNIEKVLDRGERIE 179 (238)
Q Consensus 152 ~i~~~v~~v~~im~~ni~~il~Rge~L~ 179 (238)
.++.++.++| .++|.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 3555555544 35777777766653
No 73
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=25.16 E-value=93 Score=23.84 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=31.7
Q ss_pred hhHHHHhhhccCCchhhhHHHHHHHHHH-HhHhhhhhhHHHHHHhh
Q 026426 131 PRLKEHMQYCMSHPEEMSKLSKLKAQIT-EVKGIMMDNIEKVLDRG 175 (238)
Q Consensus 131 ~~l~~~~~~y~~~p~~~dkl~~i~~~v~-~v~~im~~ni~~il~Rg 175 (238)
+.....++.|+.+|.......++++=++ ....-=+.|+.+++++-
T Consensus 20 eeYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLekI 65 (153)
T 1zkr_A 20 DEYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDKI 65 (153)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 3456667788777777778888888888 65566666776666553
No 74
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=24.58 E-value=1e+02 Score=17.24 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 026426 214 KLMVGGAVIAFIIIV 228 (238)
Q Consensus 214 ~iii~~vv~~ii~iI 228 (238)
.+|+..++++++.+|
T Consensus 13 LlivVvVvVlvVvVi 27 (35)
T 1spf_A 13 LLVVVVVVVLVVVVI 27 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EEEEEeeehhhHHHH
Confidence 344444444444444
No 75
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=24.04 E-value=48 Score=27.56 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHhhhHHHHhHHhhhhH
Q 026426 148 SKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENL 188 (238)
Q Consensus 148 dkl~~i~~~v~~v~~im~~ni~~il~Rge~L~~L~~ks~~L 188 (238)
..+.++...+.++.+++.+=-..+.+.|+.|+.++...+.-
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a 240 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA 240 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56788889999999998887778889999999998776554
No 76
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=23.08 E-value=90 Score=19.83 Aligned_cols=6 Identities=0% Similarity=-0.247 Sum_probs=2.2
Q ss_pred HHHHHH
Q 026426 213 MKLMVG 218 (238)
Q Consensus 213 ~~iii~ 218 (238)
..+++.
T Consensus 38 ~t~vv~ 43 (65)
T 3bo0_B 38 VTALGI 43 (65)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 333333
No 77
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=22.33 E-value=1.4e+02 Score=18.42 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=8.7
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 026426 210 NLQMKLMVGGAVIAFIIIV 228 (238)
Q Consensus 210 ~~k~~iii~~vv~~ii~iI 228 (238)
|+-+=++.+++|++++.+.
T Consensus 18 NFl~SlvaG~vVvv~i~~a 36 (50)
T 3bz1_X 18 GFFIGLLSGAVVLGLTFAV 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3434455555544444333
No 78
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=21.73 E-value=35 Score=20.56 Aligned_cols=7 Identities=14% Similarity=0.264 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 026426 216 MVGGAVI 222 (238)
Q Consensus 216 ii~~vv~ 222 (238)
|.+++|.
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333333
No 79
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.58 E-value=77 Score=18.06 Aligned_cols=17 Identities=6% Similarity=0.380 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026426 212 QMKLMVGGAVIAFIIIV 228 (238)
Q Consensus 212 k~~iii~~vv~~ii~iI 228 (238)
+...|.+++|.+++++|
T Consensus 6 ~~~sIaagVvglll~vi 22 (35)
T 1iij_A 6 PVTFIIATVVGVLLFLI 22 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CCcEeHHHHHHHHHHHH
Confidence 34455555555443333
No 80
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=21.35 E-value=95 Score=20.58 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=10.0
Q ss_pred HHHhHHH-HHHHHHHHHHHHHHHH
Q 026426 208 LQNLQMK-LMVGGAVIAFIIIVWL 230 (238)
Q Consensus 208 w~~~k~~-iii~~vv~~ii~iI~~ 230 (238)
|...++. +++++|++++-++|++
T Consensus 13 Y~tLRiGGLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 13 YQSLQIGGLVIAGILFILGILIVL 36 (72)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhccchHHHHHHHHHHHHHHH
Confidence 3444444 3444444444444443
Done!