Query 026427
Match_columns 238
No_of_seqs 45 out of 47
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 13:20:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026427.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026427hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f54a_ a.39.1.5 (A:) Calmodul 42.5 7.1 0.00052 25.2 2.4 21 165-186 1-21 (77)
2 d2np3a2 a.121.1.1 (A:100-211) 34.8 17 0.0012 26.2 3.7 33 151-183 75-107 (112)
3 d2ozba1 d.79.3.1 (A:4-128) Spl 34.3 8.3 0.0006 28.3 1.9 29 162-190 4-32 (125)
4 d1lkja_ a.39.1.5 (A:) Calmodul 33.0 10 0.00074 26.4 2.1 16 165-180 24-39 (146)
5 d1aono_ b.35.1.1 (O:) Chaperon 31.7 7.1 0.00052 27.2 1.0 30 119-148 63-92 (97)
6 d1ppjb1 d.185.1.1 (B:17-235) C 26.8 18 0.0013 27.0 2.7 30 149-180 47-76 (219)
7 d1fc4a_ c.67.1.4 (A:) 2-amino- 24.7 22 0.0016 29.6 3.2 35 192-228 38-73 (401)
8 d3dwya1 a.29.2.1 (A:1084-1197) 23.9 23 0.0017 24.9 2.7 20 168-187 2-21 (114)
9 d1hr6b1 d.185.1.1 (B:24-245) M 23.1 34 0.0025 24.5 3.6 40 148-187 169-212 (222)
10 d2ixta1 c.41.1.1 (A:1-309) Sph 22.9 34 0.0025 26.2 3.7 32 152-186 257-288 (309)
11 d2alea1 d.79.3.1 (A:1-126) Sma 21.7 19 0.0014 26.3 1.9 29 161-189 4-32 (126)
12 d1l8ya_ a.21.1.1 (A:) Nucleola 21.6 25 0.0018 24.9 2.4 34 150-191 18-51 (84)
13 d2hh8a1 d.358.1.1 (A:7-133) Hy 20.9 1.2E+02 0.0088 22.4 6.5 98 82-204 7-105 (127)
No 1
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.50 E-value=7.1 Score=25.23 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=16.1
Q ss_pred ccCCChHHHHHHHHHHHhhhhh
Q 026427 165 AKNLTPNQLQEALSKTFSVKKR 186 (238)
Q Consensus 165 AK~ltP~qLQkALskafs~~kr 186 (238)
|++||++|++. +..+|...-+
T Consensus 1 ~~~lt~eqi~e-l~~~F~~~D~ 21 (77)
T d1f54a_ 1 SSNLTEEQIAE-FKEAFALFDK 21 (77)
T ss_dssp CCCCCHHHHHH-HHHHHHHTCT
T ss_pred CCCCCHHHHHH-HHHHHHHHcC
Confidence 67899999985 7788876633
No 2
>d2np3a2 a.121.1.1 (A:100-211) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=34.78 E-value=17 Score=26.15 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHHHHHhccccccCCChHHHHHHHHHHHhh
Q 026427 151 IACFMAAYLLSLKQAKNLTPNQLQEALSKTFSV 183 (238)
Q Consensus 151 IA~FmA~yIlSlpkAK~ltP~qLQkALskafs~ 183 (238)
+...|+|||+-+|--..+++++|.+.++-++..
T Consensus 75 ~Gl~~~Ryvl~~eplas~~~eelv~~laP~lQ~ 107 (112)
T d2np3a2 75 VGLAMMRYVAHLEPLASADTDTVARHYGRAVQA 107 (112)
T ss_dssp HHHHHHHHTSCCTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcccCCCHHHHHHHHHHHHHH
Confidence 445689999999999999999999999988753
No 3
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.35 E-value=8.3 Score=28.31 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=23.8
Q ss_pred cccccCCChHHHHHHHHHHHhhhhhhhhh
Q 026427 162 LKQAKNLTPNQLQEALSKTFSVKKRKGKL 190 (238)
Q Consensus 162 lpkAK~ltP~qLQkALskafs~~krkgKl 190 (238)
+|.|..|++.+|++.+-+.++.-.|.|++
T Consensus 4 ~~~a~P~a~~~l~~kil~ll~~a~~~~~l 32 (125)
T d2ozba1 4 NPKAYPLADAHLTKKLLDLVQQSCNYKQL 32 (125)
T ss_dssp CTTSCSBCCHHHHHHHHHHHHHHHHTTCE
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHcCCc
Confidence 69999999999999998888755555554
No 4
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.02 E-value=10 Score=26.37 Aligned_cols=16 Identities=6% Similarity=0.252 Sum_probs=9.3
Q ss_pred ccCCChHHHHHHHHHH
Q 026427 165 AKNLTPNQLQEALSKT 180 (238)
Q Consensus 165 AK~ltP~qLQkALska 180 (238)
.-.+++++|..+|...
T Consensus 24 ~G~i~~~e~~~~l~~~ 39 (146)
T d1lkja_ 24 NGSISSSELATVMRSL 39 (146)
T ss_dssp SSEEEHHHHHHHHHHH
T ss_pred CCcEeHHHHHHHHHhc
Confidence 4456666666666543
No 5
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}
Probab=31.71 E-value=7.1 Score=27.19 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=19.3
Q ss_pred eEEecCCCccCCCCCCCCCCeEEeccchhH
Q 026427 119 DMVSDNDLWESGNIDLDREDYVLVSEEDIV 148 (238)
Q Consensus 119 d~V~~~d~we~e~~g~d~e~YVlV~eEDIV 148 (238)
|+|.-......+....+++.|++++++||.
T Consensus 63 D~Vl~~~~~g~~~~~~dg~~y~ii~e~dIl 92 (97)
T d1aono_ 63 DIVIFNDGYGVKSEKIDNEEVLIMSESDIL 92 (97)
T ss_dssp CEEEECCCSSCEEEESSSCEEEEEETTTEE
T ss_pred CEEEEecccCceEEEECCEEEEEEEHHHEE
Confidence 444444443333334678899999999985
No 6
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.81 E-value=18 Score=27.00 Aligned_cols=30 Identities=7% Similarity=0.068 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhccccccCCChHHHHHHHHHH
Q 026427 149 DGIACFMAAYLLSLKQAKNLTPNQLQEALSKT 180 (238)
Q Consensus 149 DGIA~FmA~yIlSlpkAK~ltP~qLQkALska 180 (238)
.|||.|+...+.. .++.+|..||++.+.+.
T Consensus 47 ~G~ahlle~l~~~--gt~~~s~~~i~~~~~~~ 76 (219)
T d1ppjb1 47 LGTSHLLRLASSL--TTKGASSFKITRGIEAV 76 (219)
T ss_dssp TTHHHHHHHCTTS--CBSSSCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHhh--ccccchhHHHHHHHHHh
Confidence 4999999886654 89999999999988664
No 7
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=24.75 E-value=22 Score=29.59 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=28.2
Q ss_pred hhhc-ccceEeeehhhhhhHHHhhcCHHHHHHHHHHHH
Q 026427 192 KAWD-GSKVIYNVASWGATAVGIYQNPVILRAASKAFW 228 (238)
Q Consensus 192 k~Wd-~gKviY~~aSWg~ta~GlYqNp~ilk~A~ka~~ 228 (238)
++|+ -||-+.+.+|-.| .|+=++|.|.+++.+|+-
T Consensus 38 ~v~~~dG~~~l~f~s~dY--LGl~~hp~v~~a~~~a~~ 73 (401)
T d1fc4a_ 38 DITVADGSHVINFCANNY--LGLANHPDLIAAAKAGMD 73 (401)
T ss_dssp EEEBTTSCEEEECCCSCT--TSCTTCHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEEEcccc--ccccCCHHHHHHHHHHHH
Confidence 3676 4788888888776 577799999999999874
No 8
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.93 E-value=23 Score=24.90 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=17.3
Q ss_pred CChHHHHHHHHHHHhhhhhh
Q 026427 168 LTPNQLQEALSKTFSVKKRK 187 (238)
Q Consensus 168 ltP~qLQkALskafs~~krk 187 (238)
++|++|+++|.+.+..+.++
T Consensus 2 ~~p~el~~~l~~~l~~l~~~ 21 (114)
T d3dwya1 2 FKPEELRQALMPTLEALYRQ 21 (114)
T ss_dssp CCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 68999999999999888654
No 9
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.12 E-value=34 Score=24.54 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhccc----cccCCChHHHHHHHHHHHhhhhhh
Q 026427 148 VDGIACFMAAYLLSLK----QAKNLTPNQLQEALSKTFSVKKRK 187 (238)
Q Consensus 148 VDGIA~FmA~yIlSlp----kAK~ltP~qLQkALskafs~~krk 187 (238)
.+.|-.|..+|..... =+-+++|+++.+.+.+.|+..+++
T Consensus 169 ~~~l~~f~~~~y~p~n~~l~i~G~~~~~~~~~~i~~~f~~lp~~ 212 (222)
T d1hr6b1 169 RTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKS 212 (222)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhcCccCEEEEEEcCCCHHHHHHHHHHHHhCCCCC
Confidence 4567789999986443 245899999999999999977643
No 10
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}
Probab=22.89 E-value=34 Score=26.17 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=20.7
Q ss_pred HHHHHHHHhccccccCCChHHHHHHHHHHHhhhhh
Q 026427 152 ACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKR 186 (238)
Q Consensus 152 A~FmA~yIlSlpkAK~ltP~qLQkALskafs~~kr 186 (238)
|-.+|-.+.-+| +|||.|++..|..+=.....
T Consensus 257 aG~~Ali~~~~p---~lt~~~v~~~L~~tA~~~~~ 288 (309)
T d2ixta1 257 SGLAAKIWAENP---SLSNTQLRSNLQERAKSVDI 288 (309)
T ss_dssp HHHHHHHHHHST---TCCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHCC---CCCHHHHHHHHHhhCccCCC
Confidence 333443344444 79999999999887654433
No 11
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=21.66 E-value=19 Score=26.34 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=23.7
Q ss_pred ccccccCCChHHHHHHHHHHHhhhhhhhh
Q 026427 161 SLKQAKNLTPNQLQEALSKTFSVKKRKGK 189 (238)
Q Consensus 161 SlpkAK~ltP~qLQkALskafs~~krkgK 189 (238)
-+|.|.-|.+++|++.+-+.+..-.|.|+
T Consensus 4 ~~~~a~P~a~~~l~~~i~~ll~~a~~~~~ 32 (126)
T d2alea1 4 PNPKAFPLADAALTQQILDVVQQAANLRQ 32 (126)
T ss_dssp CCTTCCSBCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 37999999999999999888875555555
No 12
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.62 E-value=25 Score=24.90 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhccccccCCChHHHHHHHHHHHhhhhhhhhhh
Q 026427 150 GIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLR 191 (238)
Q Consensus 150 GIA~FmA~yIlSlpkAK~ltP~qLQkALskafs~~krkgKlr 191 (238)
-|+.|+|+|=..-.+| |+|+--|..+|.||.|+.
T Consensus 18 vIgdYlA~fk~DR~Ka--------qkaMeatW~~meKkEki~ 51 (84)
T d1l8ya_ 18 VIGDYLARFKNDRVKA--------LKAMEMTWNNMEKKEKLM 51 (84)
T ss_dssp HHHHHHHHTTSTHHHH--------HHHHHHHHHTTGGGHHHH
T ss_pred HHHHHHHHHHhhHHHH--------HHHHHHHHHhhhhhhhhH
Confidence 3788999987766554 899999999999998873
No 13
>d2hh8a1 d.358.1.1 (A:7-133) Hypothetical protein YdfO {Escherichia coli [TaxId: 562]}
Probab=20.95 E-value=1.2e+02 Score=22.36 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=64.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhhhcCCCCCCCCCcceEEecCCCccCCCCCCCCCCeEEeccchhHHHHHHHHHHHHhc
Q 026427 82 DELCDLLRSRVECPDFLDKLEYAQLSGPPNNIEGSSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLS 161 (238)
Q Consensus 82 d~Lyd~Lks~Vesp~FL~kLe~~q~sv~qn~ee~~sWd~V~~~d~we~e~~g~d~e~YVlV~eEDIVDGIA~FmA~yIlS 161 (238)
-+.++.-++.-+-|.|.+.|+.+.-+-++---.++.=..+ +++||++..+-. -..
T Consensus 7 k~~~~~vk~~adFp~~~~~lk~~gV~~Y~y~V~~G~~~y~-------------~~dg~~V~~~~~------------~~~ 61 (127)
T d2hh8a1 7 KQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIV-------------LKNDNTVLLKGL------------KNI 61 (127)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHCSSEEEEETTTTEEEEE-------------CSSSCEEEEECS------------TTC
T ss_pred HHHHHHhhcCCCcHHHHHHHHHhCceeEEEEeccCCEEEE-------------ecCCCEEEeecC------------cce
Confidence 4678999999999999999999976533221222222221 223333322211 134
Q ss_pred cccccCCChHHHHHHHHHHHhhhhh-hhhhhhhhcccceEeeeh
Q 026427 162 LKQAKNLTPNQLQEALSKTFSVKKR-KGKLRKAWDGSKVIYNVA 204 (238)
Q Consensus 162 lpkAK~ltP~qLQkALskafs~~kr-kgKlrk~Wd~gKviY~~a 204 (238)
+|=+..-.+++++.||.++.++... .+=.+++|.+|-.-|.+.
T Consensus 62 ~~Va~~~n~~~i~~al~~~QaG~~~f~~Fc~~~a~AGv~~w~vd 105 (127)
T d2hh8a1 62 VSVKFSKDRHLIETTSNKLKSREITFQEYRRNLAKAGVFRWVTN 105 (127)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCcCCHHHHHHHHHHHhcCCccHHHHHHHHHhCCceEEEEE
Confidence 5667778899999999999987755 444567999997777653
Done!