Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>026428
MVRAALVHLLRSQSKQLSSRSFHSGYQLCRLGARSPTPKVNFNSAIPVAAAQRRWASQNS
AAEDNKISIGPRRGGEAVEDEKDGSVVYYGPISSTIKKVKLLSLSTCCLSVSLGPVITFM
TSPDMNVIVKGAVASSVIFMSATTTAALHWFVSPYIHKLKWKPGSDSFEVEMMSWLATYI
PKTIRFADIRLPETNRPFVTFKANENFYFVDAEHCHNKALLARLTPQKATQESALKNL

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026428
        (238 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2039260 - symbol:AT2G35790 "AT2G35790" species...   649  1.2e-63   1


>TAIR|locus:2039260 [details] [associations]
            symbol:AT2G35790 "AT2G35790" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0001510 "RNA methylation" evidence=RCA]
            GO:GO:0005739 EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006068
            EMBL:AC007017 eggNOG:NOG238110 InterPro:IPR009724 PANTHER:PTHR13281
            Pfam:PF06979 EMBL:AY042895 EMBL:AY072456 IPI:IPI00535383 PIR:A84773
            RefSeq:NP_565823.1 UniGene:At.23290 STRING:Q9ZQQ1 PaxDb:Q9ZQQ1
            PRIDE:Q9ZQQ1 EnsemblPlants:AT2G35790.1 GeneID:818151
            KEGG:ath:AT2G35790 TAIR:At2g35790 HOGENOM:HOG000240566
            InParanoid:Q9ZQQ1 OMA:PDMNVIL PhylomeDB:Q9ZQQ1
            ProtClustDB:CLSN2688716 ArrayExpress:Q9ZQQ1 Genevestigator:Q9ZQQ1
            Uniprot:Q9ZQQ1
        Length = 238

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 136/245 (55%), Positives = 166/245 (67%)

Query:     1 MVRAALVHXXXXXXXXXXXXXFHSGYQ---LCRLGARSPTPKVNFNSAIPVAAAQRRWAS 57
             M R+AL+H             F SGY    +    + S  PKV F   +P + +QR WAS
Sbjct:     1 MGRSALIHLLRSQSRRLSSSTFTSGYHHRSIAGSWSSSVNPKVRFQ--VP-SLSQRSWAS 57

Query:    58 QNSAA-EDN---KISIGPRRGGEAVEDEKDGSVVYYGPISSTIXXXXXXXXXXXXXXXXX 113
               +   ED+   KISIGP+   E    EKDG VVYYGPISSTI                 
Sbjct:    58 FGAKTREDDDEHKISIGPQEKKE----EKDGGVVYYGPISSTIKKVKLLSLSTCCLSVSL 113

Query:   114 GPVITFMTSPDMNVIVKGAVASSVIFMSATTTAALHWFVSPYIHKLKWKPGSDSFEVEMM 173
             GPVITFMTSP +NVI+KGAVAS+VIF+SA+TTAALHWFVSPY+HKL+W+PGSD+FEVEMM
Sbjct:   114 GPVITFMTSPGLNVIMKGAVASTVIFLSASTTAALHWFVSPYVHKLRWQPGSDTFEVEMM 173

Query:   174 SWLATYIPKTIRFADIRLPETNRPFVTFKANENFYFVDAEHCHNKALLARLTPQKATQES 233
             +WL T+  KT++F+DIR P+T RP+V+FKA+ NFYFVDA+HC NKALLARLTP K   +S
Sbjct:   174 TWLGTFSAKTLKFSDIRYPDTQRPYVSFKADGNFYFVDADHCPNKALLARLTPPKDAHDS 233

Query:   234 ALKNL 238
             A KNL
Sbjct:   234 AFKNL 238


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.131   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      238       208   0.00077  112 3  11 22  0.48    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.30u 0.11s 17.41t   Elapsed:  00:00:01
  Total cpu time:  17.30u 0.11s 17.41t   Elapsed:  00:00:01
  Start:  Fri May 10 13:10:03 2013   End:  Fri May 10 13:10:04 2013

Back to top