BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026428
         (238 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
          Length = 361

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 168 FEVEMMSWLATYIPKTIRFADIRLPETNRPFVTFKANENFYFVDAEHCHNKALL 221
           F  E+ + +  ++PK++   D +L        +FK    F F+D++H  N+ +L
Sbjct: 131 FGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRIL 184


>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein
           Disulfide Isomerase
          Length = 228

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 168 FEVEMMSWLATYIPKTIRFADIRLPETNRPFVTFKANENFYFVDAEHCHNKALL 221
           F  E+ + +  ++PK++   D +L        +FK    F F+D++H  N+ +L
Sbjct: 120 FGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRIL 173


>pdb|3V9F|A Chain A, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt3049 From B.
           Thetaiotaomicron
 pdb|3V9F|B Chain B, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt3049 From B.
           Thetaiotaomicron
 pdb|3V9F|C Chain C, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt3049 From B.
           Thetaiotaomicron
 pdb|3V9F|D Chain D, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt3049 From B.
           Thetaiotaomicron
          Length = 781

 Score = 28.1 bits (61), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 44  SAIPVAAAQRRWASQNSAAEDNKISIGPRRGGEAVEDEKDGSVVYY 89
           S +P   +++ W +  + AED K+ IG   GG ++    D SV ++
Sbjct: 155 STVPALPSEQTWTA--TEAEDGKLYIGHVEGGLSILSLNDKSVKHF 198


>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein
           Disulphide- Isomerase Modulate Exposure Of The Substrate
           Binding B' Domain
          Length = 147

 Score = 27.7 bits (60), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 171 EMMSWLATYIPKTIRFADIRLPETNRPFVTFKANENFYFVDAEHCHNKALL 221
           E+ + +  ++PK++   D +L        +FK    F F+D++H  N+ +L
Sbjct: 31  EIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRIL 81


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.131    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,900,845
Number of Sequences: 62578
Number of extensions: 202620
Number of successful extensions: 287
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 4
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)