BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026428
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q95SS8|TMM70_DROME Transmembrane protein 70 homolog, mitochondrial OS=Drosophila
melanogaster GN=CG7506 PE=2 SV=1
Length = 236
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 76 EAVEDEKDGSV--VYYGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPDMNVIVKGAV 133
++ + E D ++ +YYG ++ +K VK SLST ++ P+ + M + G
Sbjct: 59 KSTKTESDDALQRIYYGTLAPRMKMVKFFSLSTSLAGLAAQPI---LLEQGMKI---GGT 112
Query: 134 ASSVI------FMSATTTAALHWFVSPYIHKLKWKPGSDSFEVEMMSWLATYIPKTIRFA 187
+V F + T LH+ Y+ +L + P ++ + +S L I T R
Sbjct: 113 GMAVFLCTVGGFFTFVTPLLLHFITKKYVTELHYNPLTEEYTATTISLLLQKIKTTFRPN 172
Query: 188 DIRLPETNRPFVTFKANENFYFVD 211
D+ +PE F +F N+ FVD
Sbjct: 173 DVVVPEVPGMFTSFLVNKRPLFVD 196
>sp|A6H773|TMM70_BOVIN Transmembrane protein 70, mitochondrial OS=Bos taurus GN=TMEM70
PE=2 SV=1
Length = 254
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 70 GPRRGGEAVEDEKDGSVVYYGPISSTIKKVKLLSLSTCCLSVSLGPVI-----TFMTSPD 124
G R ++ +DG ++Y G ++ T+ VK S ST +S++ P I S
Sbjct: 75 GVRCSHTQLDKSEDGRLIYTGNLARTVFGVKCFSYSTSLISLAFLPYIFAQNNVIFGSLP 134
Query: 125 MNVIVKGAVASSVIFMSATTTAALHWFVSPYIHKLKWKPGSDSFEVEMMSWLATYIPKTI 184
+ ++ G + S + T A LH+ Y+ +L + +D+++ S + +
Sbjct: 135 LQILFYGTIGS----FTVITPALLHFLTKGYVIRLYHEARTDTYKAITYSVVLSEKSTVF 190
Query: 185 RFADIRLPETNRPFVTFKANENFYFVD 211
D+++P + F TF A V+
Sbjct: 191 HQNDVKIPNSTHVFTTFYAKTKSLLVN 217
>sp|Q5ZLJ4|TMM70_CHICK Transmembrane protein 70, mitochondrial OS=Gallus gallus GN=TMEM70
PE=2 SV=1
Length = 246
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 84 GSVVYYGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPDMN-VIVKGAVASSVIFMSA 142
G +VY G ++ + V+ S ST ++ + P + T + + ++ A + F +
Sbjct: 84 GRLVYKGNLAKAVLGVRFFSYSTSIFNLFMAPYLMLKTGIGFDSLFLQAAFYGLIGFFTF 143
Query: 143 TTTAALHWFVSPYIHKLKWKPGSDSFEVEMMSWLATYIPKTIRF--ADIRLPETNRPFVT 200
T LH Y+ +L +K D++ +++ A K F D+++P+ + F T
Sbjct: 144 VTPVTLHILTKGYVIRLYYKEEMDTYTA--ITYNAILAEKATVFHQKDVKIPDITKMFTT 201
Query: 201 FKAN 204
F A
Sbjct: 202 FYAK 205
>sp|Q921N7|TMM70_MOUSE Transmembrane protein 70, mitochondrial OS=Mus musculus GN=Tmem70
PE=2 SV=2
Length = 253
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 78 VEDEKDGSVVYYGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPDMNVIVKGAVASSV 137
V+ ++G ++Y G ++ TI VK S ST +S++ P + N ++ G++ V
Sbjct: 82 VDKPENGRLIYTGNLARTIFGVKCFSYSTSVVSLAFLPYLL-----SQNNMMFGSLPLQV 136
Query: 138 IF------MSATTTAALHWFVSPYIHKLKWKPGSDSFEVEMMSWLATYIPKTIRFADIRL 191
+F + T LH Y+ +L + SD++ + + + D+ +
Sbjct: 137 LFYGVMGSFTVITPTLLHLLTKGYVIRLYHEATSDTYRAVTYNVMLSETSTVFHQDDVTI 196
Query: 192 PETNRPFVTFKA 203
PE+ F +F A
Sbjct: 197 PESAHIFTSFYA 208
>sp|Q9P7Q5|YFVA_SCHPO Uncharacterized protein C1834.10c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1834.10c PE=4 SV=1
Length = 178
Score = 37.7 bits (86), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 29/145 (20%)
Query: 85 SVVYYGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPDMNVIVKGAVA----SSVIFM 140
+ VY P+ I +K S+ SLG +T+M SP M ++ G ++ S++F+
Sbjct: 23 AAVYDAPLKKAIGNIKKFSIG------SLG--LTYMISPVMLLLDAGGLSLGTRMSMVFL 74
Query: 141 SATTT----AALHWFVSPYIHKLKWKPGS---DSFEVEMMSWLATYIPKTIRFADIRLPE 193
+ TTT A +HW Y+ + K ++F + L+ Y +++P+
Sbjct: 75 ACTTTSLSTAIIHWAAKSYVSEATLKGNVLSLNTFNILGKKRLSQYT-----LDKLKIPD 129
Query: 194 TN--RPFVTFKAN---ENFYFVDAE 213
TN RPF ++ + ++++ E
Sbjct: 130 TNNSRPFANLESTTVPKRYFYLHPE 154
>sp|Q9BUB7|TMM70_HUMAN Transmembrane protein 70, mitochondrial OS=Homo sapiens GN=TMEM70
PE=1 SV=2
Length = 260
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Query: 79 EDEKDGSVVYYGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSP-------DMNVIVKG 131
+ +DG ++Y G ++ + VK S ST + ++ P I + + +I G
Sbjct: 87 DKSEDGRLIYTGNMARAVFGVKCFSYSTSLIGLTFLPYIFTQNNAISESVPLPIQIIFYG 146
Query: 132 AVASSVIFMSATTTAALHWFVSPYIHKLKWKPGSDSFEVEMMSWLATYIPKTIRFADIRL 191
+ S + T LH+ Y+ +L + +D+++ + + D+++
Sbjct: 147 IMGS----FTVITPVLLHFITKGYVIRLYHEATTDTYKAITYNAMLAETSTVFHQNDVKI 202
Query: 192 PETNRPFVTFKA 203
P+ F TF A
Sbjct: 203 PDAKHVFTTFYA 214
>sp|C4JHY5|DAPB_UNCRE Probable dipeptidyl-aminopeptidase B OS=Uncinocarpus reesii (strain
UAMH 1704) GN=DAPB PE=3 SV=1
Length = 914
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 95 TIKKVKLLS--LSTCCLSVSLGPVITFMTSP----DMNVIVKGAVASSVIFMSATT---- 144
T KKV ++ ++ C+ L FM SP D V+V GA S+V + +T
Sbjct: 83 TPKKVSIIFWLVAALCVGGWLVAFFVFMGSPKKDSDKEVVVSGAENSTVPGVVSTGGKKV 142
Query: 145 --TAALHWFVSPYIHKLKWKPGSDSFEVEMMSWLATYIPKTIRFADIR 190
L F SP H++ W PG D + ++ +R +IR
Sbjct: 143 DLDGVLTGFWSPRSHEISWIPGPDGEDGLLLEQDGDENAGYLRVENIR 190
>sp|P09103|PDIA1_MOUSE Protein disulfide-isomerase OS=Mus musculus GN=P4hb PE=1 SV=2
Length = 509
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 168 FEVEMMSWLATYIPKTIRFADIRLPETNRPFVTFKANENFYFVDAEHCHNKALL 221
F E+ + + ++PK++ D +L R FK F F+D++H N+ +L
Sbjct: 251 FGGEIKTHILLFLPKSVSDYDGKLSSFKRAAEGFKGKILFIFIDSDHTDNQRIL 304
>sp|A8W3G3|YCF2_CUSEX Protein ycf2 OS=Cuscuta exaltata GN=ycf2 PE=3 SV=1
Length = 2238
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 23/139 (16%)
Query: 103 SLSTCCLSVSL-----GPVITFMTSPDMNVIVKGAVASSVIFMSATTTAALHWFVSP--- 154
SLS C + L P+I FM +M + G SV + + LH + +P
Sbjct: 437 SLSGYCSTSQLFKERENPMINFMFPGEMEEFI-GNPTRSVRSFCSDRWSELHLWSNPTEK 495
Query: 155 --YIHK-----LKWKPGSDSFEVEMMSWLATYIPKTIRFADI-------RLPETNRPFVT 200
HK L + G+++ E++ + + TY+ KT+ I R+P+ + +
Sbjct: 496 STLDHKFVKNHLSFVRGAENKEIKNLRRIITYLQKTVSIHSISSDPRWDRVPKHDPDMDS 555
Query: 201 FKANENFYFVDAEHCHNKA 219
FK N F+ H N+
Sbjct: 556 FKKNSLFFLFHRFHERNRG 574
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,863,036
Number of Sequences: 539616
Number of extensions: 2955540
Number of successful extensions: 7005
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7000
Number of HSP's gapped (non-prelim): 16
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)