Query 026428
Match_columns 238
No_of_seqs 90 out of 106
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4478 Uncharacterized membra 100.0 2.3E-57 4.9E-62 393.1 8.1 211 6-238 2-217 (217)
2 PF06979 DUF1301: Protein of u 100.0 2.4E-53 5.2E-58 350.0 13.3 132 98-229 1-133 (133)
3 PF14640 TMEM223: Transmembran 98.0 3.9E-05 8.4E-10 66.1 10.0 99 130-228 64-168 (170)
4 PF15128 T_cell_tran_alt: T-ce 44.4 35 0.00075 27.1 3.7 37 129-165 23-62 (92)
5 PF03812 KdgT: 2-keto-3-deoxyg 37.3 23 0.0005 33.8 2.1 54 101-154 256-312 (314)
6 TIGR00793 kdgT 2-keto-3-deoxyg 35.1 21 0.00046 34.0 1.5 54 102-155 257-313 (314)
7 PRK10878 hypothetical protein; 33.7 21 0.00046 26.9 1.0 27 211-237 29-55 (72)
8 PRK05274 2-keto-3-deoxyglucona 28.6 26 0.00057 33.2 0.9 56 102-157 259-317 (326)
9 PF01349 Flavi_NS4B: Flaviviru 24.4 40 0.00087 31.2 1.3 31 124-156 37-67 (254)
10 PHA03156 hypothetical protein; 21.0 74 0.0016 25.3 2.0 35 126-160 55-89 (90)
No 1
>KOG4478 consensus Uncharacterized membrane protein [Function unknown]
Probab=100.00 E-value=2.3e-57 Score=393.10 Aligned_cols=211 Identities=23% Similarity=0.248 Sum_probs=189.2
Q ss_pred HHHHHHhccccccccccCCcceeeecccc---CCCCCcCcCCchhhhhhhhhhhcccccccCCceeeCCCCCCCCcccCC
Q 026428 6 LVHLLRSQSKQLSSRSFHSGYQLCRLGAR---SPTPKVNFNSAIPVAAAQRRWASQNSAAEDNKISIGPRRGGEAVEDEK 82 (238)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~q~~~~~~~~~~~~~~is~~~~~~~~~~~~~~ 82 (238)
+.|+++.|++|+|+++..+ +||+.+. +.-+++.+|+.| -.|.+|+|-...+ +|++.
T Consensus 2 ~~h~a~~~~~r~ssstf~~---~~Rsi~~~s~~s~~~v~pq~~~---~~q~~w~S~~~~k---------------~e~dd 60 (217)
T KOG4478|consen 2 SSHYALLRPIRISSSTFQK---CVRSIGTTSKSSVVEVLPQSKI---DKQDLWHSILIHK---------------GELDD 60 (217)
T ss_pred cceeeeeccceeccccchh---hheeccccccCCcccccccccc---hhhhhhhhheecc---------------ccCCC
Confidence 5799999999999998876 8888552 233777777775 6799999977766 23333
Q ss_pred CCceEEEccCccceeEEeEEeeechhhhccccceeeeccCCCch--hHHHHHHHHHHHHHHhhhHHHHHHhhcCceeEEE
Q 026428 83 DGSVVYYGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPDMN--VIVKGAVASSVIFMSATTTAALHWFVSPYIHKLK 160 (238)
Q Consensus 83 ~~~lVY~GpLa~~Vr~vKlFSLsSs~lsl~~~Pvl~~~~~~~~s--l~~k~av~~~v~~ft~~Tp~LLHw~tKpYV~~Ly 160 (238)
....+|+|++|++|++||+||||||++|++++|+|+.++.+..+ .+.++++|.+.+|++++||+|||||+||||++||
T Consensus 61 g~Q~~yyg~vA~~vkgVK~lSlSTsl~gv~~~Pvi~~q~~~i~~~~pim~~f~~~~g~Flv~~TpllLHfitk~Yvi~L~ 140 (217)
T KOG4478|consen 61 GSQKTYYGVVAMGVKGVKILSLSTSLAGVVMVPVLSSQLWEIAAERPIMMMFAIVAGTFLVLLTPLLLHFITKRYVIDLF 140 (217)
T ss_pred cccccccchhhhhcceeEEEEehhhhhhhhhhhhHhhhcchhhcccchhhhhHhhhhhHHHHhHHHHHHHHhccceEEEE
Confidence 33559999999999999999999999999999999998887555 7888889999999999999999999999999999
Q ss_pred EeCCCCeEEEEEEeeeeeeeeeEEeeCceecCCCCCceEEEEECCeeeeEecCCCCCHHHHhhhCCCCcchhhhhccC
Q 026428 161 WKPGSDSFEVEMMSWLATYIPKTIRFADIRLPETNRPFVTFKANENFYFVDAEHCHNKALLARLTPQKATQESALKNL 238 (238)
Q Consensus 161 ~~p~tdtyta~T~s~fl~~k~t~F~~~DV~~P~t~rpFtTF~a~gkplfV~p~~F~d~~~y~kLmgyd~~~~~~~~~~ 238 (238)
|||++|+|||+||||++++..++|+++||++||+.+||++|.|++++|||||.+|||+++|.+|||||+ .|++++|.
T Consensus 141 ~np~tdtfta~tyn~Llqk~attf~~sDV~~Pdv~~~ftsF~a~~~~lfVdp~lfpdre~y~~lmgydd-~df~l~~~ 217 (217)
T KOG4478|consen 141 YNPDTDTFTAVTYNFLLQKQATTFSASDVVDPDVAPEFTSFWAPLATLFVDPLLFPDREAYLDLMGYDD-LDFNLHIP 217 (217)
T ss_pred EcCCCceeehhhHHHHHHHHhheecccceecCCCCCceeEEEecCcceeeccccCCCHHHHHhhcCCch-hhhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 99999984
No 2
>PF06979 DUF1301: Protein of unknown function (DUF1301); InterPro: IPR009724 This family contains a number of eukaryotic proteins of unknown function that are approximately 160 residues long.
Probab=100.00 E-value=2.4e-53 Score=350.04 Aligned_cols=132 Identities=33% Similarity=0.507 Sum_probs=126.8
Q ss_pred EEeEEeeechhhhccccceeeeccC-CCchhHHHHHHHHHHHHHHhhhHHHHHHhhcCceeEEEEeCCCCeEEEEEEeee
Q 026428 98 KVKLLSLSTCCLSVSLGPVITFMTS-PDMNVIVKGAVASSVIFMSATTTAALHWFVSPYIHKLKWKPGSDSFEVEMMSWL 176 (238)
Q Consensus 98 ~vKlFSLsSs~lsl~~~Pvl~~~~~-~~~sl~~k~av~~~v~~ft~~Tp~LLHw~tKpYV~~Ly~~p~tdtyta~T~s~f 176 (238)
+||+|||+||++|++++|+|+...+ ...|+++++++|+++++|+++||+||||+|||||+||||||++|+|+|+|||||
T Consensus 1 ~vK~fSlsTs~~sl~~~P~il~~~~~~~~s~~~~~a~~~~v~~ft~~Tp~lLH~~tK~YV~~ly~~~~~d~yta~T~s~~ 80 (133)
T PF06979_consen 1 GVKIFSLSTSCLSLVMQPVILLKTGPEFGSLPLKVAFASTVGFFTFITPLLLHWFTKRYVIRLYYNPGTDTYTAETYSFF 80 (133)
T ss_pred CceEEEehHhhhHHhhhhHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccceeEEEEcCCCCEEEEEEEeee
Confidence 5899999999999999996666544 477899999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeEEeeCceecCCCCCceEEEEECCeeeeEecCCCCCHHHHhhhCCCCc
Q 026428 177 ATYIPKTIRFADIRLPETNRPFVTFKANENFYFVDAEHCHNKALLARLTPQKA 229 (238)
Q Consensus 177 l~~k~t~F~~~DV~~P~t~rpFtTF~a~gkplfV~p~~F~d~~~y~kLmgyd~ 229 (238)
+++++++|+++||++||++||||||+|+|+||||||++|+||+||+|||||||
T Consensus 81 ~~~~~~~F~~~DV~~P~~~~~ftTF~a~~~~lfv~~~~F~~~~~y~~lmGydk 133 (133)
T PF06979_consen 81 LREKKTRFKPSDVKVPDVPRMFTTFYAKGKPLFVDPELFPDPEDYNKLMGYDK 133 (133)
T ss_pred eeeeeeEEEHhHeeCCCCCCceEEEEECCEEEEEchhhCCCHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999996
No 3
>PF14640 TMEM223: Transmembrane protein 223
Probab=98.05 E-value=3.9e-05 Score=66.13 Aligned_cols=99 Identities=9% Similarity=0.132 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcCceeEEEEeCCCCeEEEEEEeeeeeeeeeEEeeCceecCC---CCCceEEEEECCe
Q 026428 130 KGAVASSVIFMSATTTAALHWFVSPYIHKLKWKPGSDSFEVEMMSWLATYIPKTIRFADIRLPE---TNRPFVTFKANEN 206 (238)
Q Consensus 130 k~av~~~v~~ft~~Tp~LLHw~tKpYV~~Ly~~p~tdtyta~T~s~fl~~k~t~F~~~DV~~P~---t~rpFtTF~a~gk 206 (238)
+.++....++++.+...+.+++..++|..++...+++..++.||++|++.+..+.-+++|..-+ ..+......++|+
T Consensus 64 R~gl~~~~~~~g~~~l~~~~~f~rRsV~~i~L~kgG~~v~i~Ty~~fG~~~~~~vPl~~vs~~~~r~~~~~~i~lkvkg~ 143 (170)
T PF14640_consen 64 RYGLTAICLLFGALILGAGWFFPRRSVRYIYLHKGGQNVRITTYAPFGRRRDFTVPLNQVSCLTHRSDAPSQIPLKVKGR 143 (170)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhheeeEEEEecCCcEEEEEEecccCCCCceEEcHHHcccchhccCCCceeEEEECCc
Confidence 3344444466666677888899999999999999999999999999999888887777876633 3467888999998
Q ss_pred eee--Eec-CCCCCHHHHhhhCCCC
Q 026428 207 FYF--VDA-EHCHNKALLARLTPQK 228 (238)
Q Consensus 207 plf--V~p-~~F~d~~~y~kLmgyd 228 (238)
.+| +|. ..|.|+++|+..+|..
T Consensus 144 ~fyylld~~G~f~n~~lFd~tvg~~ 168 (170)
T PF14640_consen 144 RFYYLLDKRGEFVNPRLFDQTVGVY 168 (170)
T ss_pred eEEEEEecCCcCCCHHHHHHHhhhc
Confidence 876 443 7899999999999863
No 4
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=44.45 E-value=35 Score=27.07 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcCc---eeEEEEeCCC
Q 026428 129 VKGAVASSVIFMSATTTAALHWFVSPY---IHKLKWKPGS 165 (238)
Q Consensus 129 ~k~av~~~v~~ft~~Tp~LLHw~tKpY---V~~Ly~~p~t 165 (238)
+|+.+|-+++.--+++-+++|+--|.| |..|||.+++
T Consensus 23 mrv~ifkllL~WlvlsLl~I~lAWk~yG~TV~dmyyRqG~ 62 (92)
T PF15128_consen 23 MRVQIFKLLLGWLVLSLLAIHLAWKVYGNTVNDMYYRQGT 62 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeCCCC
Confidence 577788788888888888888877777 9999998865
No 5
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=37.30 E-value=23 Score=33.76 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=42.2
Q ss_pred EEeeechhhhccccceeeeccCCCch---hHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 026428 101 LLSLSTCCLSVSLGPVITFMTSPDMN---VIVKGAVASSVIFMSATTTAALHWFVSP 154 (238)
Q Consensus 101 lFSLsSs~lsl~~~Pvl~~~~~~~~s---l~~k~av~~~v~~ft~~Tp~LLHw~tKp 154 (238)
=++.+|.+...+..|.++...+|... -.++.-++..+..+++++|.+-.|+.|+
T Consensus 256 G~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~kr 312 (314)
T PF03812_consen 256 GAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWAKR 312 (314)
T ss_pred eehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35778888888899999887776322 3455556777999999999999999986
No 6
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=35.13 E-value=21 Score=33.99 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=42.3
Q ss_pred EeeechhhhccccceeeeccCCCch---hHHHHHHHHHHHHHHhhhHHHHHHhhcCc
Q 026428 102 LSLSTCCLSVSLGPVITFMTSPDMN---VIVKGAVASSVIFMSATTTAALHWFVSPY 155 (238)
Q Consensus 102 FSLsSs~lsl~~~Pvl~~~~~~~~s---l~~k~av~~~v~~ft~~Tp~LLHw~tKpY 155 (238)
+..+|....-+..|.++...+|... -.++.-+++.+..+.+.+|++-.|+.|++
T Consensus 257 ~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~kr~ 313 (314)
T TIGR00793 257 IAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWSKKV 313 (314)
T ss_pred hHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777888899999888776322 34555577889999999999999999975
No 7
>PRK10878 hypothetical protein; Provisional
Probab=33.68 E-value=21 Score=26.88 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=21.9
Q ss_pred ecCCCCCHHHHhhhCCCCcchhhhhcc
Q 026428 211 DAEHCHNKALLARLTPQKATQESALKN 237 (238)
Q Consensus 211 ~p~~F~d~~~y~kLmgyd~~~~~~~~~ 237 (238)
.--.++|+++|+=+||++.|.+..++.
T Consensus 29 ~LL~~~D~dL~~W~~g~~~p~d~~l~~ 55 (72)
T PRK10878 29 RLLECDDPDLFNWLMNHGKPADAELER 55 (72)
T ss_pred HHHcCCCHHHHHHHhCCCCCCCHHHHH
Confidence 334578999999999999998877654
No 8
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=28.64 E-value=26 Score=33.22 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=42.6
Q ss_pred EeeechhhhccccceeeeccCC---CchhHHHHHHHHHHHHHHhhhHHHHHHhhcCcee
Q 026428 102 LSLSTCCLSVSLGPVITFMTSP---DMNVIVKGAVASSVIFMSATTTAALHWFVSPYIH 157 (238)
Q Consensus 102 FSLsSs~lsl~~~Pvl~~~~~~---~~sl~~k~av~~~v~~ft~~Tp~LLHw~tKpYV~ 157 (238)
+.++|.+.+.+..|..+...+| ...-.+.+++++++..+.++.|++-+|+.|++=.
T Consensus 259 ~a~~ttaG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~~ 317 (326)
T PRK05274 259 AAAGSTAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWSKRVGK 317 (326)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6777778777888877666665 2224456677888889999999999999987653
No 9
>PF01349 Flavi_NS4B: Flavivirus non-structural protein NS4B; InterPro: IPR001528 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4B protein is small and poorly conserved among the Flaviviruses. NS4B contains multiple hydrophobic potential membrane spanning regions []. NS4B may form membrane components of the viral replication complex and could be involved in membrane localisation of NS3 and NS5 (see IPR000208 from INTERPRO) [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=24.39 E-value=40 Score=31.25 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=23.9
Q ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHhhcCce
Q 026428 124 DMNVIVKGAVASSVIFMSATTTAALHWFVSPYI 156 (238)
Q Consensus 124 ~~sl~~k~av~~~v~~ft~~Tp~LLHw~tKpYV 156 (238)
|+--..-++++ ++..+++||.++||+..-|.
T Consensus 37 DlrPataW~~Y--a~~vt~~tP~l~H~i~t~y~ 67 (254)
T PF01349_consen 37 DLRPATAWGLY--AGIVTLLTPLLLHWITTEYQ 67 (254)
T ss_pred cCCcchhHHHH--HHHHHHhhHHHHHHHHHHHH
Confidence 44445555666 77889999999999998875
No 10
>PHA03156 hypothetical protein; Provisional
Probab=20.99 E-value=74 Score=25.28 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHhhcCceeEEE
Q 026428 126 NVIVKGAVASSVIFMSATTTAALHWFVSPYIHKLK 160 (238)
Q Consensus 126 sl~~k~av~~~v~~ft~~Tp~LLHw~tKpYV~~Ly 160 (238)
+.+..+++...+.++.++.=.|.||+.+.+|.+|.
T Consensus 55 SFSSIWallN~~i~~~A~~ifL~y~CF~kFvs~~t 89 (90)
T PHA03156 55 TFSSIWAILNGIIFFCASLFFLRHLCFVKFISHLT 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47778888888888888888999999999988763
Done!