Query 026428
Match_columns 238
No_of_seqs 90 out of 106
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gpo_C Nuclear receptor-intera 48.0 7.5 0.00026 23.3 1.3 12 4-15 13-24 (26)
2 1z2t_A Anchor peptide Ser65-Le 21.1 5 0.00017 23.7 -2.6 13 148-160 7-19 (26)
3 2jr3_A Pelovaterin; beta-defen 17.4 35 0.0012 22.1 0.5 9 24-32 34-42 (42)
4 1pp9_E Ubiquinol-cytochrome C 14.1 1.1E+02 0.0039 25.4 3.0 26 182-211 74-99 (196)
5 3cx5_E Cytochrome B-C1 complex 12.7 2.2E+02 0.0076 23.3 4.3 27 182-212 64-90 (185)
6 2nwf_A Ubiquinol-cytochrome C 10.5 2.4E+02 0.0082 22.1 3.7 28 182-213 4-31 (141)
7 3arc_I Photosystem II reaction 7.3 3.3E+02 0.011 17.5 2.6 17 127-143 2-18 (38)
8 4dvc_A Thiol:disulfide interch 6.9 2.6E+02 0.009 20.8 2.5 24 200-224 153-176 (184)
9 1x6i_A Hypothetical protein YG 6.6 1.2E+02 0.004 22.5 0.3 20 215-234 52-71 (91)
10 4dx5_A Acriflavine resistance 6.5 1.6E+02 0.0053 30.0 1.2 51 104-154 444-499 (1057)
No 1
>2gpo_C Nuclear receptor-interacting protein 1; estrogen related receptor, ERR, ERRG, ESRRG, steroid receptor, RIP140, transcription; 1.95A {Homo sapiens} PDB: 2gpp_C*
Probab=47.98 E-value=7.5 Score=23.33 Aligned_cols=12 Identities=50% Similarity=0.742 Sum_probs=10.2
Q ss_pred HHHHHHHHhccc
Q 026428 4 AALVHLLRSQSK 15 (238)
Q Consensus 4 ~~~~~~~~~~~~ 15 (238)
+.|+|||.||+-
T Consensus 13 SLLLhLLksq~~ 24 (26)
T 2gpo_C 13 SLLLHLLKSQTI 24 (26)
T ss_pred hHHHHHHHhccc
Confidence 579999999974
No 2
>1z2t_A Anchor peptide Ser65-Leu87 of ALMGS; lipid binding protein; NMR {Synthetic}
Probab=21.12 E-value=5 Score=23.74 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=10.2
Q ss_pred HHHhhcCceeEEE
Q 026428 148 LHWFVSPYIHKLK 160 (238)
Q Consensus 148 LHw~tKpYV~~Ly 160 (238)
|-+|+|+||.+|+
T Consensus 7 lvlfvkryvrkmr 19 (26)
T 1z2t_A 7 LVLFVKRYVRKMR 19 (26)
T ss_dssp HHHHHHHHTHHHH
T ss_pred EeeeHHHHHHHHH
Confidence 4468899998876
No 3
>2jr3_A Pelovaterin; beta-defensin like peptide, chinese SOFT-shelled turtle eggshell, antibacterial peptide, eggshell matrix; NMR {Pelodiscus sinensis}
Probab=17.43 E-value=35 Score=22.06 Aligned_cols=9 Identities=44% Similarity=1.302 Sum_probs=7.3
Q ss_pred Ccceeeecc
Q 026428 24 SGYQLCRLG 32 (238)
Q Consensus 24 ~~~~~~~~~ 32 (238)
.||.+||+|
T Consensus 34 ggfgccrig 42 (42)
T 2jr3_A 34 GGFGCCRIG 42 (42)
T ss_dssp TTEEBCBCC
T ss_pred CCcceeecC
Confidence 588999886
No 4
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=14.07 E-value=1.1e+02 Score=25.40 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=18.5
Q ss_pred eEEeeCceecCCCCCceEEEEECCeeeeEe
Q 026428 182 KTIRFADIRLPETNRPFVTFKANENFYFVD 211 (238)
Q Consensus 182 t~F~~~DV~~P~t~rpFtTF~a~gkplfV~ 211 (238)
.+..++|+.+ +-..+|..+|+|+||-
T Consensus 74 v~v~ls~l~~----G~~~~v~~~G~pV~V~ 99 (196)
T 1pp9_E 74 IEIKLSDIPE----GKNMAFKWRGKPLFVR 99 (196)
T ss_dssp EEEEGGGSCT----TCEEEEEETTEEEEEE
T ss_pred cEEEHHHCCC----CCeEEEEECCEEEEEE
Confidence 4566777642 3556888999999974
No 5
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=12.65 E-value=2.2e+02 Score=23.26 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=18.9
Q ss_pred eEEeeCceecCCCCCceEEEEECCeeeeEec
Q 026428 182 KTIRFADIRLPETNRPFVTFKANENFYFVDA 212 (238)
Q Consensus 182 t~F~~~DV~~P~t~rpFtTF~a~gkplfV~p 212 (238)
.++..+|+. .+-..++..+|+|+||--
T Consensus 64 v~V~~s~l~----~G~~~~v~~~g~pv~v~r 90 (185)
T 3cx5_E 64 VEVNLAAIP----LGKNVVVKWQGKPVFIRH 90 (185)
T ss_dssp EEEEGGGCC----TTCEEEEEETTEEEEEEE
T ss_pred EEEEHHHCC----CCCeEEEEECCeEEEEEE
Confidence 344566663 256788899999999843
No 6
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=10.53 E-value=2.4e+02 Score=22.06 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=20.4
Q ss_pred eEEeeCceecCCCCCceEEEEECCeeeeEecC
Q 026428 182 KTIRFADIRLPETNRPFVTFKANENFYFVDAE 213 (238)
Q Consensus 182 t~F~~~DV~~P~t~rpFtTF~a~gkplfV~p~ 213 (238)
+++.++++.+ +-..+++.+|||+||--.
T Consensus 4 ~~vd~s~l~~----g~~~~v~wrgkPv~i~~r 31 (141)
T 2nwf_A 4 IFVDVSSVEP----GVQLTVKFLGKPIFIRRR 31 (141)
T ss_dssp EEEECTTCCT----TEEEEEEETTEEEEEEEC
T ss_pred EEEecccCCC----CCEEEEEECCEEEEEEEC
Confidence 4556666543 677889999999998543
No 7
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=7.27 E-value=3.3e+02 Score=17.50 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHhh
Q 026428 127 VIVKGAVASSVIFMSAT 143 (238)
Q Consensus 127 l~~k~av~~~v~~ft~~ 143 (238)
+.+|+.++.++.+|..+
T Consensus 2 ltLKi~Vy~vV~ffvsL 18 (38)
T 3arc_I 2 ETLKITVYIVVTFFVLL 18 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeEEeeehhHHHHHHHH
Confidence 46788888888877654
No 8
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=6.88 E-value=2.6e+02 Score=20.83 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=16.8
Q ss_pred EEEECCeeeeEecCCCCCHHHHhhh
Q 026428 200 TFKANENFYFVDAEHCHNKALLARL 224 (238)
Q Consensus 200 TF~a~gkplfV~p~~F~d~~~y~kL 224 (238)
||.+||| |.|++......+.+.++
T Consensus 153 tfiINGk-y~v~~~~~~s~e~~~~~ 176 (184)
T 4dvc_A 153 AVVVNNR-YLVQGQSAKSLDEYFDL 176 (184)
T ss_dssp EEEETTT-EEECGGGCSSHHHHHHH
T ss_pred EEEECCE-EeeCCcCCCCHHHHHHH
Confidence 7899998 45777666666666554
No 9
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=6.60 E-value=1.2e+02 Score=22.48 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=16.1
Q ss_pred CCCHHHHhhhCCCCcchhhh
Q 026428 215 CHNKALLARLTPQKATQESA 234 (238)
Q Consensus 215 F~d~~~y~kLmgyd~~~~~~ 234 (238)
.+|+++|+-+||.+++.+..
T Consensus 52 ~~D~DL~~w~~g~~~~p~~~ 71 (91)
T 1x6i_A 52 CDDPDLFNWLMNHGKPADAE 71 (91)
T ss_dssp SCHHHHHHHHTTSSBCSSHH
T ss_pred CCCHHHHHHHHCCCCCCCHH
Confidence 57999999999998766543
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=6.53 E-value=1.6e+02 Score=30.04 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=29.3
Q ss_pred eechhhhccccceeeecc--CC---CchhHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 026428 104 LSTCCLSVSLGPVITFMT--SP---DMNVIVKGAVASSVIFMSATTTAALHWFVSP 154 (238)
Q Consensus 104 LsSs~lsl~~~Pvl~~~~--~~---~~sl~~k~av~~~v~~ft~~Tp~LLHw~tKp 154 (238)
+++++..+++.|+++... ++ .+.+..-+++.......-.++|+++.|+.++
T Consensus 444 ~t~ltt~~~f~pl~~~~g~~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~ 499 (1057)
T 4dx5_A 444 GIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKP 499 (1057)
T ss_dssp HHHHHHHHHHSGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445555566788876531 11 2223333444444455556779999998765
Done!