Query 026428
Match_columns 238
No_of_seqs 90 out of 106
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 13:21:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026428.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026428hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ffga1 d.317.1.1 (A:2-79) Hyp 23.8 61 0.0044 22.2 4.9 33 156-190 35-67 (78)
2 d1t77a2 b.55.1.6 (A:2076-2185) 11.4 63 0.0046 22.7 2.4 41 166-225 62-102 (110)
3 d2axti1 f.23.37.1 (I:1-35) Pho 7.9 1.2E+02 0.0088 17.7 2.3 17 127-143 2-18 (35)
4 d1puza_ a.218.1.1 (A:) Hypothe 7.3 34 0.0025 23.1 -0.6 22 215-236 52-73 (82)
5 d2jmfa1 b.72.1.1 (A:521-553) U 6.1 99 0.0072 17.5 1.2 10 203-212 13-22 (33)
6 d1ihoa_ c.26.1.4 (A:) Pantothe 6.0 80 0.0058 25.9 1.0 17 207-223 54-70 (282)
7 d1pina1 b.72.1.1 (A:6-39) Mito 5.8 1.2E+02 0.0089 16.9 1.5 10 204-213 14-23 (34)
8 d1beda_ c.47.1.13 (A:) Disulfi 5.7 1.6E+02 0.012 20.2 2.5 24 200-224 150-173 (181)
9 d1oj5a_ d.110.3.8 (A:) PAS dom 5.6 72 0.0052 21.4 0.4 13 202-214 9-21 (109)
10 d2p7tc1 f.14.1.1 (C:86-119) Po 5.5 2.8E+02 0.021 15.6 3.8 21 133-153 11-31 (34)
No 1
>d2ffga1 d.317.1.1 (A:2-79) Hypothetical protein YkuJ {Bacillus subtilis [TaxId: 1423]}
Probab=23.77 E-value=61 Score=22.24 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=23.6
Q ss_pred eeEEEEeCCCCeEEEEEEeeeeeeeeeEEeeCcee
Q 026428 156 IHKLKWKPGSDSFEVEMMSWLATYIPKTIRFADIR 190 (238)
Q Consensus 156 V~~Ly~~p~tdtyta~T~s~fl~~k~t~F~~~DV~ 190 (238)
+.+..|+|.+++|+.++|.= .++..+|.+.|+-
T Consensus 35 ~c~V~y~~~t~tf~l~~~~~--~~~~~~y~FDdID 67 (78)
T d2ffga1 35 ICSVKYFEKNQTFELTVFQK--GEKPNTYPFDNID 67 (78)
T ss_dssp EEEEEEETTTTEEEEEEEET--TEEEEEEEESCHH
T ss_pred EEEEEEecCCCeEEEEEecC--CCcccccccCccc
Confidence 34567999999999998852 2345667777754
No 2
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.44 E-value=63 Score=22.72 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=27.9
Q ss_pred CeEEEEEEeeeeeeeeeEEeeCceecCCCCCceEEEEECCeeeeEecCCCCCHHHHhhhC
Q 026428 166 DSFEVEMMSWLATYIPKTIRFADIRLPETNRPFVTFKANENFYFVDAEHCHNKALLARLT 225 (238)
Q Consensus 166 dtyta~T~s~fl~~k~t~F~~~DV~~P~t~rpFtTF~a~gkplfV~p~~F~d~~~y~kLm 225 (238)
|.-++...-+++++...++ |..+|+.||++ |+|++..++..
T Consensus 62 ~i~~v~~Rr~ll~~~alEi----------------f~~~~~s~~~~---F~~~~~~~~v~ 102 (110)
T d1t77a2 62 EIRSIFSRRYLLQNTALEI----------------FMANRVAVMFN---FPDPATVKKVV 102 (110)
T ss_dssp GEEEEEEEEETTEEEEEEE----------------EETTSCEEEEE---CSSHHHHHHHH
T ss_pred HHHHHHhhhhcCCceEEEE----------------EEcCCcEEEEE---eCCHHHHHHHH
Confidence 4444555556666555554 67889999998 88888777643
No 3
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.91 E-value=1.2e+02 Score=17.67 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHhh
Q 026428 127 VIVKGAVASSVIFMSAT 143 (238)
Q Consensus 127 l~~k~av~~~v~~ft~~ 143 (238)
+.+|+.++.++.||...
T Consensus 2 ltLKi~Vy~vV~fFv~l 18 (35)
T d2axti1 2 ETLKITVYIVVTFFVLL 18 (35)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ceEEEehhhHHHHHHHH
Confidence 35788888888887654
No 4
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=7.33 E-value=34 Score=23.09 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=17.2
Q ss_pred CCCHHHHhhhCCCCcchhhhhc
Q 026428 215 CHNKALLARLTPQKATQESALK 236 (238)
Q Consensus 215 F~d~~~y~kLmgyd~~~~~~~~ 236 (238)
.+|+++|+=++|.+++.+..++
T Consensus 52 ~~D~dL~~wl~g~~~~p~~~~~ 73 (82)
T d1puza_ 52 FQDQELLALINGHSETDKGHLI 73 (82)
T ss_dssp SCHHHHHHHHHTCSCCSCTTHH
T ss_pred CChHHHHHHHhCCCCCCcHHHH
Confidence 4799999999999887665544
No 5
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.12 E-value=99 Score=17.49 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=7.8
Q ss_pred ECCeeeeEec
Q 026428 203 ANENFYFVDA 212 (238)
Q Consensus 203 a~gkplfV~p 212 (238)
.+|+.||||-
T Consensus 13 ~~G~~Yyinh 22 (33)
T d2jmfa1 13 AAGERFFVDH 22 (33)
T ss_dssp TTSCEEEEET
T ss_pred CCCCEEEEEC
Confidence 4788899885
No 6
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=5.97 E-value=80 Score=25.89 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=15.4
Q ss_pred eeeEecCCCCCHHHHhh
Q 026428 207 FYFVDAEHCHNKALLAR 223 (238)
Q Consensus 207 plfV~p~~F~d~~~y~k 223 (238)
..||||.-|.+.+||.+
T Consensus 54 SIFVNP~QF~~~eD~~~ 70 (282)
T d1ihoa_ 54 SIFVNPMQFDRPEDLAR 70 (282)
T ss_dssp EECCCGGGCSSHHHHHH
T ss_pred EEEecCccCcccchhhc
Confidence 57999999999999986
No 7
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.77 E-value=1.2e+02 Score=16.92 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=7.9
Q ss_pred CCeeeeEecC
Q 026428 204 NENFYFVDAE 213 (238)
Q Consensus 204 ~gkplfV~p~ 213 (238)
.|+.||+|..
T Consensus 14 ~G~~YY~n~~ 23 (34)
T d1pina1 14 SGRVYYFNHI 23 (34)
T ss_dssp SCCEEEEETT
T ss_pred CCCEEEEECC
Confidence 4789999874
No 8
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}
Probab=5.74 E-value=1.6e+02 Score=20.19 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=18.2
Q ss_pred EEEECCeeeeEecCCCCCHHHHhhh
Q 026428 200 TFKANENFYFVDAEHCHNKALLARL 224 (238)
Q Consensus 200 TF~a~gkplfV~p~~F~d~~~y~kL 224 (238)
||.++|+ |.|++....+.+.+..+
T Consensus 150 t~~InGk-~~v~~~~~~~~~~l~~~ 173 (181)
T d1beda_ 150 AVVVNNR-YLVQGQSVKSLDEYFDL 173 (181)
T ss_dssp EEEETTT-EEECGGGCCSHHHHHHH
T ss_pred EEEECCE-EeeCCCCCCCHHHHHHH
Confidence 8889998 48888887777666544
No 9
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.60 E-value=72 Score=21.41 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=10.2
Q ss_pred EECCeeeeEecCC
Q 026428 202 KANENFYFVDAEH 214 (238)
Q Consensus 202 ~a~gkplfV~p~~ 214 (238)
-.+|+..||||..
T Consensus 9 ~~~g~~~~vd~~~ 21 (109)
T d1oj5a_ 9 DTTGKIISIDTSS 21 (109)
T ss_dssp CTTCCEEEEECHH
T ss_pred CCCceEEEECHHH
Confidence 3689999999853
No 10
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=5.49 E-value=2.8e+02 Score=15.61 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhHHHHHHhhc
Q 026428 133 VASSVIFMSATTTAALHWFVS 153 (238)
Q Consensus 133 v~~~v~~ft~~Tp~LLHw~tK 153 (238)
+..-+-.|+.++.++-.||..
T Consensus 11 mvagits~glv~aa~atwfvg 31 (34)
T d2p7tc1 11 MVAGITSFGLVTAALATWFVG 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccchhhhHHHHHHHHhhc
Confidence 334456778888888889864
Done!