Query 026429
Match_columns 238
No_of_seqs 116 out of 512
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:54:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01222 ERG4_ERG24: Ergostero 100.0 9.6E-71 2.1E-75 519.9 19.4 207 29-237 65-277 (432)
2 KOG1435 Sterol reductase/lamin 100.0 9.1E-67 2E-71 482.5 17.1 215 21-237 56-274 (428)
3 TIGR02935 probable nitrogen fi 51.9 6.5 0.00014 32.3 0.8 17 218-235 78-94 (140)
4 PF03270 DUF269: Protein of un 35.4 11 0.00024 30.3 -0.3 17 218-235 58-74 (122)
5 PF05512 AWPM-19: AWPM-19-like 20.9 1.4E+02 0.0031 24.6 3.7 42 167-208 88-137 (142)
6 PF13033 DUF3894: Protein of u 19.1 2.2E+02 0.0047 19.3 3.6 38 165-202 8-45 (54)
7 PF13962 PGG: Domain of unknow 18.2 4.4E+02 0.0096 20.0 6.8 13 42-56 21-33 (113)
8 PF12963 DUF3852: Protein of u 17.5 3.8E+02 0.0083 21.1 5.2 34 173-206 65-98 (111)
9 COG4743 Predicted membrane pro 15.7 72 0.0016 29.0 1.0 81 44-127 62-143 (316)
10 COG1953 FUI1 Cytosine/uracil/t 15.3 6.9E+02 0.015 24.9 7.6 131 77-225 289-425 (497)
No 1
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=100.00 E-value=9.6e-71 Score=519.91 Aligned_cols=207 Identities=45% Similarity=0.798 Sum_probs=201.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhCCcceeeccCCCCCCCcccccchhHHHHHHHHHHHHHHHhcccccceehhhHHHHHH
Q 026429 29 IPTAVAWKLIACFGAFEAALQLLLPGKRVEGPISPTGHRPVYKANGVASYAVTLITYLSLWWFGIFNPTIVYDHLGEIYS 108 (238)
Q Consensus 29 ~pt~~a~~~y~~~~~~qa~l~~~lPG~~v~G~~~~~G~rl~Y~~NGl~s~~~tl~~~~~l~~~~~~~~~~i~d~~~~Ll~ 108 (238)
.||++||++|++|+++|++++.+||||+++|+|+|+|+|++|||||+.++++|+++++++++.++++++.|+||++++++
T Consensus 65 ~~~~~a~~~~~~~~~~qa~l~~~lPG~~v~G~~l~~G~rL~Yk~NGl~~~~~tl~~~~~l~~~~~~~~~~i~d~~~~L~~ 144 (432)
T PF01222_consen 65 LWDWEAWKVYLAWFAFQALLYLVLPGKRVEGPPLPDGKRLKYKCNGLQSFLVTLALFAVLHYYGIFPLTFIYDHFGQLLT 144 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCceEEECcCcCCCCcccEEeCCHHHHHHHHHHHHHHHHcCCCChHhHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------CCCCCCCCchhhhhcCceeCccccccccchhhhccchhHHHHHHHHHHHHH
Q 026429 109 ALIFGSFIFCIFLYIKGHLAPSS------TDSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCI 182 (238)
Q Consensus 109 ~~~i~s~~~s~~ly~k~~~~p~~------~~~~~sGn~iyDff~G~eLNPRig~~~DlK~f~e~R~g~i~w~li~ls~a~ 182 (238)
+++++|+++|+++|+||+..|+. +++++|||+||||||||||||||| .+|+|||+|+||||++|.++|+|+++
T Consensus 145 ~~~i~s~~~s~~lyik~~~~~~~~~d~~l~~~~~sGn~iyDff~G~ELNPRig-~~DlK~F~e~R~gli~w~li~ls~a~ 223 (432)
T PF01222_consen 145 AANIFSFILSIFLYIKSFRAPSHPKDRQLAPGGNSGNFIYDFFMGRELNPRIG-GFDLKMFCELRPGLIGWLLINLSFAA 223 (432)
T ss_pred HHHHHHHHHHHHHHHhhhccCCccccccccccCCCCceeeeeeeccccCCCee-eEeeeeeeccChHHHHHHHHHHHHHH
Confidence 99999999999999999998872 368999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccccceeecccC
Q 026429 183 KQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRVLLDMIAFNHW 237 (238)
Q Consensus 183 ~qy~~~G~vs~sm~l~~~~q~~Yv~d~~~~E~~~l~T~DI~~e~fGf~ml~fg~~ 237 (238)
||||++|++|+||++++++|++|++||+++||++++||||+|||||| ||+|||.
T Consensus 224 ~qye~~G~vs~sm~~~~~~~~~Yv~d~~~~E~~~l~t~Di~~d~fGf-ml~~g~l 277 (432)
T PF01222_consen 224 KQYEQYGYVSPSMILVVLLQFLYVLDFFWNEEGYLTTMDITHDGFGF-MLCFGDL 277 (432)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHhhhhhheeeeeeEcCccc-eeehhhH
Confidence 99999999999999999999999999999999999999999999999 9999974
No 2
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.1e-67 Score=482.51 Aligned_cols=215 Identities=43% Similarity=0.715 Sum_probs=202.0
Q ss_pred ccccccCC-CCcHHHH--HHHHHHHHHHHHHHhhCCcceeeccCCCCCCCcccccchhHHHHHHHHHHHHHHHhcccccc
Q 026429 21 QGFIDIWP-IPTAVAW--KLIACFGAFEAALQLLLPGKRVEGPISPTGHRPVYKANGVASYAVTLITYLSLWWFGIFNPT 97 (238)
Q Consensus 21 ~~~~~~~~-~pt~~a~--~~y~~~~~~qa~l~~~lPG~~v~G~~~~~G~rl~Y~~NGl~s~~~tl~~~~~l~~~~~~~~~ 97 (238)
..+..+|+ .++-... .+++.|..+|++++.++||++++|++++||+|++|||||++++++|+++++.+++.|.++++
T Consensus 56 ~~l~~~~~~~~~~~~~~~~~~~~~~~~q~i~y~~lpg~~~~G~~l~~g~rl~Y~~Ngl~a~~lt~~l~~~~~~~~~~~~~ 135 (428)
T KOG1435|consen 56 AGLYELWPCTPTLAVYFAHLFALWFAIQAILYLVLPGKVVEGLPLSDGSRLKYKINGLAALILTLLLLGVLASLGVFRPT 135 (428)
T ss_pred chheeccccccceEEEehhhhhhHHHHhhhhhcccCceeeeeeecCCCCcceeeechHHHHHHHHHHHHHHHHhCCCCce
Confidence 44556677 3332222 27889999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCCCCCCchhhhhcCceeCccccccccchhhhccchhHHHHHHH
Q 026429 98 IVYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSS-TDSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVL 176 (238)
Q Consensus 98 ~i~d~~~~Ll~~~~i~s~~~s~~ly~k~~~~p~~-~~~~~sGn~iyDff~G~eLNPRig~~~DlK~f~e~R~g~i~w~li 176 (238)
+|+||+++++++++++|+++|+++|+|++..|+. +++|+|||+||||||||||||||| .+|+|||+|+||||++|.+|
T Consensus 136 ~v~d~~l~l~~~a~i~afv~s~~lY~~~~~~~~~~~~~g~sGN~iyDff~G~eLNPRig-~~D~K~F~e~R~g~~~w~lI 214 (428)
T KOG1435|consen 136 FVYDHFLPLMSAAIIFAFVFSAFLYVKGLFAPRSLADGGSSGNFIYDFFMGRELNPRIG-RFDLKMFFELRPGMIGWVLI 214 (428)
T ss_pred ehHHhhhHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcCCCcHHhhhhccccCCcee-echHHHHhhccchHHHHHHH
Confidence 9999999999999999999999999999998875 789999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccccceeecccC
Q 026429 177 AVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRVLLDMIAFNHW 237 (238)
Q Consensus 177 ~ls~a~~qy~~~G~vs~sm~l~~~~q~~Yv~d~~~~E~~~l~T~DI~~e~fGf~ml~fg~~ 237 (238)
|+++++||||++|++|+||++++++|.+||+|++||||++++||||+|||||| ||+||+.
T Consensus 215 ~ls~~~~q~e~~G~vs~amvlv~~~qllYv~d~~w~E~~~l~TmDi~hd~FGf-mL~fgd~ 274 (428)
T KOG1435|consen 215 NLSALLKQYETYGKVSPAMVLVNSFQLLYVFDALWNEELVLTTMDIAHDGFGF-MLIFGDL 274 (428)
T ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHhhhhhhcchhhhhccCcce-eeeehhh
Confidence 99999999999999999999999999999999999999999999999999999 9999974
No 3
>TIGR02935 probable nitrogen fixation protein. Members of this protein family, called DUF269 by Pfam model pfam03270, are strictly limited to nitrogen-fixing species, although not universal among them. The gene typically is found next to the nifX gene (see TIGRFAMs model TIGR02663).
Probab=51.86 E-value=6.5 Score=32.30 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=14.8
Q ss_pred hhhhhhccccccceeecc
Q 026429 218 STMDIAHDRVLLDMIAFN 235 (238)
Q Consensus 218 ~T~DI~~e~fGf~ml~fg 235 (238)
..+||-|||||. |+.|.
T Consensus 78 ~~~~l~hEGFGr-~ll~~ 94 (140)
T TIGR02935 78 PMMKLHHEGFGR-VLLIA 94 (140)
T ss_pred hhhccCCcCcce-EEEEe
Confidence 468999999999 99874
No 4
>PF03270 DUF269: Protein of unknown function, DUF269; InterPro: IPR004952 This family includes several proteins of unknown function. Members of this family may be involved in nitrogen fixation, since they are found within nitrogen fixation operons.; PDB: 3NJ2_B 3G7P_A.
Probab=35.35 E-value=11 Score=30.32 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=12.7
Q ss_pred hhhhhhccccccceeecc
Q 026429 218 STMDIAHDRVLLDMIAFN 235 (238)
Q Consensus 218 ~T~DI~~e~fGf~ml~fg 235 (238)
..+||-|||||. ++.+.
T Consensus 58 ~~~~lshEGFGr-~ll~~ 74 (122)
T PF03270_consen 58 PMMDLSHEGFGR-ALLFA 74 (122)
T ss_dssp EEEEE-TTS-EE-EEEEE
T ss_pred hhhccCCCCcce-EEEEe
Confidence 568999999999 98874
No 5
>PF05512 AWPM-19: AWPM-19-like family; InterPro: IPR008390 Members of this family are 19 kDa membrane proteins. The levels of the plant protein AWPM-19 increase dramatically when there is an increase level of abscisic acid. The increase presence of this protein leads to greater tolerance of freezing [].
Probab=20.94 E-value=1.4e+02 Score=24.61 Aligned_cols=42 Identities=19% Similarity=0.421 Sum_probs=30.2
Q ss_pred chhHHHHHH--HHHHHHHHHHHHhCC------CCchHHHHHHHHHHHHHH
Q 026429 167 RFGMMSWAV--LAVTYCIKQYEANAK------VEDSMLVNTILMLIYVTK 208 (238)
Q Consensus 167 R~g~i~w~l--i~ls~a~~qy~~~G~------vs~sm~l~~~~q~~Yv~d 208 (238)
-.+.+.|.+ +...++|||-+.-|+ ++.=++.....|.+|++-
T Consensus 88 a~a~iAW~lTlLAmGlACKeI~~g~r~~rLrtlEaf~IIl~~tQLly~l~ 137 (142)
T PF05512_consen 88 ASALIAWALTLLAMGLACKEIHLGGRNWRLRTLEAFTIILSATQLLYLLA 137 (142)
T ss_pred HHHHHHHHHHHHHHHHhHheeeecCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 456888877 556678898775442 233488899999999975
No 6
>PF13033 DUF3894: Protein of unknown function (DUF3894)
Probab=19.12 E-value=2.2e+02 Score=19.27 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=28.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 026429 165 NCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILM 202 (238)
Q Consensus 165 e~R~g~i~w~li~ls~a~~qy~~~G~vs~sm~l~~~~q 202 (238)
..-.+.+...++|+.+....+++..+-|--|+++..+.
T Consensus 8 sy~Vaiv~MALLNlTfvigaFqqk~ytsfv~al~m~f~ 45 (54)
T PF13033_consen 8 SYLVAIVCMALLNLTFVIGAFQQKQYTSFVMALVMAFS 45 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34456677889999999999888888776777665554
No 7
>PF13962 PGG: Domain of unknown function
Probab=18.16 E-value=4.4e+02 Score=19.97 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=8.1
Q ss_pred HHHHHHHHhhCCcce
Q 026429 42 GAFEAALQLLLPGKR 56 (238)
Q Consensus 42 ~~~qa~l~~~lPG~~ 56 (238)
+.||+ ..-|||..
T Consensus 21 vtF~A--~~tpPGG~ 33 (113)
T PF13962_consen 21 VTFQA--AFTPPGGY 33 (113)
T ss_pred HHHHH--hcCCCCCc
Confidence 34555 45589877
No 8
>PF12963 DUF3852: Protein of unknown function (DUF3852); InterPro: IPR024330 This entry represents a family of uncharacterised bacterial proteins found by clustering human gut metagenomic sequences [].
Probab=17.54 E-value=3.8e+02 Score=21.06 Aligned_cols=34 Identities=9% Similarity=0.153 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 026429 173 WAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYV 206 (238)
Q Consensus 173 w~li~ls~a~~qy~~~G~vs~sm~l~~~~q~~Yv 206 (238)
.++.-+++++..|++||..+.+-.......+++.
T Consensus 65 ~ffvKl~~ayfdYrKhGqfew~~pAIlFacLvFt 98 (111)
T PF12963_consen 65 FFFVKLGMAYFDYRKHGQFEWAAPAILFACLVFT 98 (111)
T ss_pred HHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHH
Confidence 3445688899999999998766444444444433
No 9
>COG4743 Predicted membrane protein [Function unknown]
Probab=15.74 E-value=72 Score=28.95 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=47.1
Q ss_pred HHHHHHhhCCcceeeccCCCCCCCcccccchhHHHHHHHHHH-HHHHHhcccccceehhhHHHHHHHHHHHHHHHHHHHH
Q 026429 44 FEAALQLLLPGKRVEGPISPTGHRPVYKANGVASYAVTLITY-LSLWWFGIFNPTIVYDHLGEIYSALIFGSFIFCIFLY 122 (238)
Q Consensus 44 ~qa~l~~~lPG~~v~G~~~~~G~rl~Y~~NGl~s~~~tl~~~-~~l~~~~~~~~~~i~d~~~~Ll~~~~i~s~~~s~~ly 122 (238)
..+++-.++||-..-+...|.-+.++=-=--..++-++++++ .....++.-+.. | .+.+++.....|++++|..+|
T Consensus 62 lg~lfVLflPGYvlt~al~P~rkeL~~~ERl~LsfglSIaivpligl~mnyt~wg-i--r~iPiLv~ls~f~lim~~iA~ 138 (316)
T COG4743 62 LGLLFVLFLPGYVLTTALFPERKELDNLERLALSFGLSIAIVPLIGLLMNYTDWG-I--RLIPILVSLSAFSLIMSIIAF 138 (316)
T ss_pred HHHHHHHHcccHHhhhhhccchhhhccHHHHHHhhceeEehHhhHHHHhcCCCCc-e--EEeEeeeehhhHHHHHhHHHH
Confidence 344557789999999987776555543222334555555544 222233322211 1 133455556778889999999
Q ss_pred HHhcc
Q 026429 123 IKGHL 127 (238)
Q Consensus 123 ~k~~~ 127 (238)
.|.+.
T Consensus 139 yRR~~ 143 (316)
T COG4743 139 YRRKN 143 (316)
T ss_pred HHHhh
Confidence 98643
No 10
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=15.28 E-value=6.9e+02 Score=24.85 Aligned_cols=131 Identities=15% Similarity=0.242 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhcc--cccceehhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhcCceeCccc
Q 026429 77 SYAVTLITYLSLWWFGI--FNPTIVYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSSTDSGSCGNIIIDFYWGMELYPRI 154 (238)
Q Consensus 77 s~~~tl~~~~~l~~~~~--~~~~~i~d~~~~Ll~~~~i~s~~~s~~ly~k~~~~p~~~~~~~sGn~iyDff~G~eLNPRi 154 (238)
+++..+...+.-..+|. .+|..|.++|.+-..++.+.++.+++ +.. ..+...|+=++-||+- .+=||-
T Consensus 289 ~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~i-----ati--~~Ni~aN~vsp~~D~s---~l~Pk~ 358 (497)
T COG1953 289 SLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAV-----ATI--STNIAANIVSPGYDLS---ALFPKY 358 (497)
T ss_pred HHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHH-----HHH--hhhHHhccCChHHHHH---Hhcccc
Confidence 33333333444455664 57888888887554433121221111 111 1233445566788884 466763
Q ss_pred cccccchhhhccchhHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH----HHHHHHHHHHhhhhhhhhhhhhhcc
Q 026429 155 GKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTI----LMLIYVTKFFLWEAGYWSTMDIAHD 225 (238)
Q Consensus 155 g~~~DlK~f~e~R~g~i~w~li~ls~a~~qy~~~G~vs~sm~l~~~----~q~~Yv~d~~~~E~~~l~T~DI~~e 225 (238)
+|+| |-|++.-.+--+.+--+=+|..+++++-+-...+ .-.+-+.|++.-+...+.==|...|
T Consensus 359 ---in~k-----rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaDyflirk~~~~v~~ly~~ 425 (497)
T COG1953 359 ---INIK-----RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIADYFLVRKGRLNLDELYTE 425 (497)
T ss_pred ---cchh-----hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccChHHhcCC
Confidence 5654 6666655554445555666766666666653333 3457889999998888887777777
Done!