Query 026429
Match_columns 238
No_of_seqs 116 out of 512
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7p_A Nitrogen fixation prote 28.9 12 0.0004 30.2 -0.0 17 218-235 92-108 (156)
2 3nj2_A DUF269-containing prote 22.8 18 0.00061 29.6 0.0 17 218-235 110-126 (174)
3 3fwb_B Nuclear mRNA export pro 14.2 56 0.0019 21.6 0.9 21 207-227 19-39 (55)
4 3fwc_B Nuclear mRNA export pro 11.2 76 0.0026 22.7 0.9 21 207-227 49-69 (85)
5 2l9u_A Receptor tyrosine-prote 9.4 3E+02 0.01 16.5 2.9 18 110-127 17-34 (40)
6 2ws9_4 P1; 3.00A {Equine rhini 9.3 1E+02 0.0035 21.7 1.0 18 132-149 13-30 (80)
7 2hac_A T-cell surface glycopro 8.6 1.5E+02 0.0052 17.5 1.4 26 202-227 3-28 (33)
8 2qkl_B SPAC19A8.12 protein, SP 7.3 1.2E+02 0.004 22.1 0.6 20 143-165 47-66 (95)
9 2yev_C CAA3-type cytochrome ox 9.9 94 0.0032 21.1 0.0 15 148-162 20-38 (66)
10 2vsm_B Ephrin-B2; developmenta 6.0 1.8E+02 0.0063 22.6 1.1 25 136-160 9-33 (140)
No 1
>3g7p_A Nitrogen fixation protein; DUF 269 family protein, structural genomics, joint center FO structural genomics; HET: SO4 PG6; 2.00A {Acidithiobacillus ferrooxidans atcc 23ORGANISM_TAXID}
Probab=28.86 E-value=12 Score=30.20 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.6
Q ss_pred hhhhhhccccccceeecc
Q 026429 218 STMDIAHDRVLLDMIAFN 235 (238)
Q Consensus 218 ~T~DI~~e~fGf~ml~fg 235 (238)
..+||-|||||. ++.|.
T Consensus 92 p~~~lshEGFGr-~lv~~ 108 (156)
T 3g7p_A 92 PMMKMSHEGFGR-MVLIA 108 (156)
T ss_dssp EEEEECSSSCEE-EEEEE
T ss_pred ehhccCCCccce-EEEEe
Confidence 458999999999 98874
No 2
>3nj2_A DUF269-containing protein; cyanobacteria, circadium rhythms, nitrogen fixation, unknown; 1.59A {Cyanothece SP}
Probab=22.76 E-value=18 Score=29.58 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=14.6
Q ss_pred hhhhhhccccccceeecc
Q 026429 218 STMDIAHDRVLLDMIAFN 235 (238)
Q Consensus 218 ~T~DI~~e~fGf~ml~fg 235 (238)
..+||-|||||. ++.|.
T Consensus 110 p~~~lsHEGFGr-~lv~~ 126 (174)
T 3nj2_A 110 VVVDLNHEGFGW-ALVWG 126 (174)
T ss_dssp EEEEECTTSCEE-EEEEE
T ss_pred eeeccCCCccce-EEEEe
Confidence 458999999999 98874
No 3
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=14.15 E-value=56 Score=21.60 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=17.7
Q ss_pred HHHHhhhhhhhhhhhhhcccc
Q 026429 207 TKFFLWEAGYWSTMDIAHDRV 227 (238)
Q Consensus 207 ~d~~~~E~~~l~T~DI~~e~f 227 (238)
.|+|..|..|..+.|...|-|
T Consensus 19 y~AFihE~lY~~~leskAd~f 39 (55)
T 3fwb_B 19 YDAFLHERLYLIYMDSRAELK 39 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999877643
No 4
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=11.20 E-value=76 Score=22.75 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=17.8
Q ss_pred HHHHhhhhhhhhhhhhhcccc
Q 026429 207 TKFFLWEAGYWSTMDIAHDRV 227 (238)
Q Consensus 207 ~d~~~~E~~~l~T~DI~~e~f 227 (238)
.|+|.+|..|.++.|...|-|
T Consensus 49 y~AFihE~lY~~~leskAd~f 69 (85)
T 3fwc_B 49 YDAFLHERLYLIYMDSRAELK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999877743
No 5
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=9.36 E-value=3e+02 Score=16.54 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 026429 110 LIFGSFIFCIFLYIKGHL 127 (238)
Q Consensus 110 ~~i~s~~~s~~ly~k~~~ 127 (238)
+++|-.+-++++|.+|++
T Consensus 17 ~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 17 VVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCceeEEEcccc
Confidence 344445568889998875
No 6
>2ws9_4 P1; 3.00A {Equine rhinitis a virus} PDB: 2wff_4 2xbo_4*
Probab=9.29 E-value=1e+02 Score=21.68 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=12.8
Q ss_pred CCCCCCCCchhhhhcCce
Q 026429 132 TDSGSCGNIIIDFYWGME 149 (238)
Q Consensus 132 ~~~~~sGn~iyDff~G~e 149 (238)
...|++|++++.|||-.=
T Consensus 13 nsSGN~G~IvnNfYsnqY 30 (80)
T 2ws9_4 13 NMSGNSGSIVQNFYMQQY 30 (80)
T ss_dssp ---CCCCCGGGGSSCHHH
T ss_pred ccCCccceeeehhhhhhh
Confidence 467899999999998543
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=8.64 E-value=1.5e+02 Score=17.52 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcccc
Q 026429 202 MLIYVTKFFLWEAGYWSTMDIAHDRV 227 (238)
Q Consensus 202 q~~Yv~d~~~~E~~~l~T~DI~~e~f 227 (238)
+.-|++|.+..=.++.-|.=-++++|
T Consensus 3 ~lCYiLDgiL~iYgii~T~Ly~R~K~ 28 (33)
T 2hac_A 3 KLCYLLDGILFIYGVILTALFLRVKF 28 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ceEeehHHHHHHHHHHHHHHHHHHHh
Confidence 35688888888877777766666655
No 8
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=7.30 E-value=1.2e+02 Score=22.15 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=16.6
Q ss_pred hhhcCceeCccccccccchhhhc
Q 026429 143 DFYWGMELYPRIGKNFDIKVFTN 165 (238)
Q Consensus 143 Dff~G~eLNPRig~~~DlK~f~e 165 (238)
||+ ++.||++- ...+|.|++
T Consensus 47 Df~--~~~np~Lp-~~~lk~F~~ 66 (95)
T 2qkl_B 47 DFI--RAQNDQLP-SLGLRVFSA 66 (95)
T ss_dssp HTT--TTTCTTSC-CCCHHHHHH
T ss_pred ccc--cccCCCCC-CCcHHHHHH
Confidence 666 69999987 789999984
No 9
>2yev_C CAA3-type cytochrome oxidase subunit IV; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=9.91 E-value=94 Score=21.11 Aligned_cols=15 Identities=40% Similarity=0.970 Sum_probs=10.4
Q ss_pred ceeCccc----cccccchh
Q 026429 148 MELYPRI----GKNFDIKV 162 (238)
Q Consensus 148 ~eLNPRi----g~~~DlK~ 162 (238)
-.+|||. ++++|+..
T Consensus 20 l~lnPR~late~e~~DLr~ 38 (66)
T 2yev_C 20 LILNPRVLTTEGETFDLRF 38 (66)
Confidence 3578887 55788853
No 10
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=6.03 E-value=1.8e+02 Score=22.56 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=17.5
Q ss_pred CCCCchhhhhcCceeCccccccccc
Q 026429 136 SCGNIIIDFYWGMELYPRIGKNFDI 160 (238)
Q Consensus 136 ~sGn~iyDff~G~eLNPRig~~~Dl 160 (238)
+|.|++++-=.|-.+.||||..+|+
T Consensus 9 nssN~~F~~~~~~~v~v~i~D~ldI 33 (140)
T 2vsm_B 9 NSSNSKFLPGQGLVLYPQIGDKLDI 33 (140)
T ss_dssp STTCTTSBTTTBEEECCCTTCEEEE
T ss_pred CCCCcCccCCCCcEEEecCCCEEEE
Confidence 4556665543456899999977887
Done!