Query 026429
Match_columns 238
No_of_seqs 116 out of 512
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 13:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026429.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026429hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eysh2 f.23.10.1 (H:7-43) Pho 16.8 47 0.0034 18.7 2.4 31 32-62 5-35 (37)
2 d2r7ka2 d.142.1.9 (A:124-361) 10.8 32 0.0023 26.1 0.6 10 148-157 186-195 (238)
3 d2r85a2 d.142.1.9 (A:100-334) 10.0 42 0.0031 25.0 1.0 13 148-160 183-195 (235)
4 d1nvpd1 a.32.1.1 (D:3-53) Smal 9.5 1.4E+02 0.01 17.8 3.2 25 179-203 14-38 (51)
5 d1nh2d1 a.32.1.1 (D:5-54) Smal 9.0 1.5E+02 0.011 17.6 3.2 35 166-203 6-40 (50)
6 d1a62a2 b.40.4.5 (A:48-125) Rh 9.0 28 0.0021 23.0 -0.4 10 220-229 8-17 (78)
7 d1uptb_ a.193.1.1 (B:) Golgi a 7.4 49 0.0036 20.5 0.3 11 139-149 10-20 (58)
8 d1jhfa1 a.4.5.2 (A:2-72) LexA 6.9 90 0.0065 19.4 1.5 27 203-229 10-36 (71)
9 d1ixda_ b.34.10.1 (A:) Cylindr 6.7 51 0.0037 22.7 0.1 27 143-169 47-77 (104)
10 d1ulza3 d.142.1.2 (A:115-328) 6.7 53 0.0039 24.2 0.2 10 148-157 172-181 (214)
No 1
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=16.76 E-value=47 Score=18.74 Aligned_cols=31 Identities=19% Similarity=0.079 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcceeeccCC
Q 026429 32 AVAWKLIACFGAFEAALQLLLPGKRVEGPIS 62 (238)
Q Consensus 32 ~~a~~~y~~~~~~qa~l~~~lPG~~v~G~~~ 62 (238)
-....+|+.|++|-.+.+.+---..-+|.|+
T Consensus 5 ~Aql~ly~Fw~FFagLi~YL~rE~~REGyPl 35 (37)
T d1eysh2 5 AAQITIWAFWLFFFGLIIYLRREDKREGYPL 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 4556788889888888777655555566554
No 2
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=10.78 E-value=32 Score=26.10 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=8.5
Q ss_pred ceeCcccccc
Q 026429 148 MELYPRIGKN 157 (238)
Q Consensus 148 ~eLNPRig~~ 157 (238)
.|+|||++++
T Consensus 186 iEinpR~~G~ 195 (238)
T d2r7ka2 186 FEMSARVDGG 195 (238)
T ss_dssp EEEESSBCGG
T ss_pred EEEECCCCCC
Confidence 7999999755
No 3
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=10.01 E-value=42 Score=25.00 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=9.6
Q ss_pred ceeCccccccccc
Q 026429 148 MELYPRIGKNFDI 160 (238)
Q Consensus 148 ~eLNPRig~~~Dl 160 (238)
.|.|||++++..+
T Consensus 183 iEiNpR~~Gg~~~ 195 (235)
T d2r85a2 183 FEISARIVAGTNI 195 (235)
T ss_dssp EEEECSCCGGGGG
T ss_pred EEEeCCCCCCCcc
Confidence 5999999655543
No 4
>d1nvpd1 a.32.1.1 (D:3-53) Small chain TOA2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.45 E-value=1.4e+02 Score=17.78 Aligned_cols=25 Identities=4% Similarity=0.216 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHH
Q 026429 179 TYCIKQYEANAKVEDSMLVNTILML 203 (238)
Q Consensus 179 s~a~~qy~~~G~vs~sm~l~~~~q~ 203 (238)
-=+..+.-+.|.++|+++.-++.|+
T Consensus 14 ~dtLDeli~~~~I~p~LA~kVL~qF 38 (51)
T d1nvpd1 14 QESLDELIQSQQITPQLALQVLLQF 38 (51)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3355677788999999998888876
No 5
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.03 E-value=1.5e+02 Score=17.57 Aligned_cols=35 Identities=9% Similarity=0.205 Sum_probs=24.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 026429 166 CRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILML 203 (238)
Q Consensus 166 ~R~g~i~w~li~ls~a~~qy~~~G~vs~sm~l~~~~q~ 203 (238)
+|-+-+|-. +-=+..+..+.|.++|+++.-++.|+
T Consensus 6 YR~stlG~~---L~dtLDeli~~~~I~p~LA~kVL~qF 40 (50)
T d1nh2d1 6 YRRSTIGNS---LVDALDTLISDGRIEASLAMRVLETF 40 (50)
T ss_dssp GGGSHHHHH---HHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HhcchHHHH---HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 455554433 33355677788999999998888875
No 6
>d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=8.98 E-value=28 Score=22.95 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=8.7
Q ss_pred hhhhcccccc
Q 026429 220 MDIAHDRVLL 229 (238)
Q Consensus 220 ~DI~~e~fGf 229 (238)
+||..|+|||
T Consensus 8 Lei~~dGyGF 17 (78)
T d1a62a2 8 LEILQDGFGF 17 (78)
T ss_dssp EEECTTSCEE
T ss_pred EEEcCCCcEE
Confidence 5899999998
No 7
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.36 E-value=49 Score=20.54 Aligned_cols=11 Identities=18% Similarity=0.691 Sum_probs=9.5
Q ss_pred CchhhhhcCce
Q 026429 139 NIIIDFYWGME 149 (238)
Q Consensus 139 n~iyDff~G~e 149 (238)
|++|.+.||+|
T Consensus 10 nvLfeYMmG~E 20 (58)
T d1uptb_ 10 KVLFEYMMGRE 20 (58)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHcCcc
Confidence 78899999986
No 8
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=6.91 E-value=90 Score=19.39 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcccccc
Q 026429 203 LIYVTKFFLWEAGYWSTMDIAHDRVLL 229 (238)
Q Consensus 203 ~~Yv~d~~~~E~~~l~T~DI~~e~fGf 229 (238)
.+-.+.-++.|+++..|++=+.+++|+
T Consensus 10 vL~~I~~~~~~~G~~Ps~rei~~~~g~ 36 (71)
T d1jhfa1 10 VFDLIRDHISQTGMPPTRAEIAQRLGF 36 (71)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCC
Confidence 344556677888888888888888887
No 9
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.73 E-value=51 Score=22.74 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=19.3
Q ss_pred hhhcCcee-Ccccc---ccccchhhhccchh
Q 026429 143 DFYWGMEL-YPRIG---KNFDIKVFTNCRFG 169 (238)
Q Consensus 143 Dff~G~eL-NPRig---~~~DlK~f~e~R~g 169 (238)
.-|.|.|| +|-.| +.+|=|.+++|++.
T Consensus 47 g~~~GVeldd~~~G~ndGt~~G~rYF~C~~~ 77 (104)
T d1ixda_ 47 EVLAGLELEDECAGCTDGTFRGTRYFTCALK 77 (104)
T ss_dssp CCEEEEEESSCCTTCBSSEETTEECSCCCTT
T ss_pred CcEEEEEeCCCCCCCcCCEECCEEEEecCCC
Confidence 36889999 77663 36777777778754
No 10
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}
Probab=6.70 E-value=53 Score=24.23 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=8.1
Q ss_pred ceeCcccccc
Q 026429 148 MELYPRIGKN 157 (238)
Q Consensus 148 ~eLNPRig~~ 157 (238)
.|+|||+++.
T Consensus 172 iEin~R~~~~ 181 (214)
T d1ulza3 172 IEMNTRIQVE 181 (214)
T ss_dssp EEEECSCCTT
T ss_pred EEecCcCCCc
Confidence 6999999743
Done!