BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026430
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna
Unguiculata Suggests A New Enzymatic Mechanism
Length = 238
Score = 289 bits (740), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 136/197 (69%), Positives = 162/197 (82%), Gaps = 1/197 (0%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
MS+ TLE+HWGKHHR YVENL KQ+VGTELDG SLE++I+ +YNKG++LP FNNAAQ WN
Sbjct: 35 MSQQTLEFHWGKHHRTYVENLKKQVVGTELDGKSLEEIIVTAYNKGDILPAFNNAAQVWN 94
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H+FFW IERDFGSF++FL+EFK+AAATQFGSGWAWLAYKA++L
Sbjct: 95 HDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLAYKASKL 154
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVW-DYSPLLTIDVWEHAYFLDFENRRPNYIS 179
+ +NA NP +++D KLVV+KSPNAVNPLVW Y PLLTIDVWEHAY+LDF+NRRP+YIS
Sbjct: 155 DGENAANPPSADEDNKLVVIKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYIS 214
Query: 180 VFMDKLVSWEVVSKRLE 196
VFMDKLVSW+ VS RLE
Sbjct: 215 VFMDKLVSWDAVSSRLE 231
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 183 bits (465), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 117/195 (60%), Gaps = 17/195 (8%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
MS TLE+H+GKHH+ YV+NLNK TEL SLEDVI +Y + FNNAAQ WN
Sbjct: 19 MSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTYGDAAKVGIFNNAAQVWN 78
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H FFW I FGS+D F +FK+AAATQFGSGWAWL +A L
Sbjct: 79 HTFFWNSLKPGGGGVPTGDVAARINSAFGSYDEFKAQFKNAAATQFGSGWAWLVLEAGTL 138
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
V K+ NA NPLV PLLTIDVWEHAY+LD++NRRP++I
Sbjct: 139 K-----------------VTKTANAENPLVHGQVPLLTIDVWEHAYYLDYQNRRPDFIDN 181
Query: 181 FMDKLVSWEVVSKRL 195
F+++LV+W+ V+K L
Sbjct: 182 FLNQLVNWDFVAKNL 196
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISA|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 192
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 109/195 (55%), Gaps = 22/195 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S +G + FNNAAQ WN
Sbjct: 18 ISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS--EGGV---FNNAAQVWN 72
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W I FGSF F +F AA FGSGW WL
Sbjct: 73 HTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWL------- 125
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
V N+ D KL +V + NA PL D +PLLT+DVWEHAY++D+ N RP Y+
Sbjct: 126 -VKNS--------DGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEH 176
Query: 181 FMDKLVSWEVVSKRL 195
F LV+WE V+K L
Sbjct: 177 FW-ALVNWEFVAKNL 190
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|B Chain B, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|C Chain C, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|D Chain D, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2BKB|A Chain A, Q69e-Fesod
pdb|2BKB|B Chain B, Q69e-Fesod
pdb|2BKB|C Chain C, Q69e-Fesod
pdb|2BKB|D Chain D, Q69e-Fesod
Length = 192
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 109/195 (55%), Gaps = 22/195 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S +G + FNNAA+ WN
Sbjct: 18 ISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS--EGGV---FNNAAEVWN 72
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W I FGSF F +F AA FGSGW WL
Sbjct: 73 HTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWL------- 125
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
V N+ D KL +V + NA PL D +PLLT+DVWEHAY++D+ N RP Y+
Sbjct: 126 -VKNS--------DGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEH 176
Query: 181 FMDKLVSWEVVSKRL 195
F LV+WE V+K L
Sbjct: 177 FW-ALVNWEFVAKNL 190
>pdb|1ZA5|A Chain A, Q69h-Fesod
pdb|1ZA5|B Chain B, Q69h-Fesod
Length = 192
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 108/195 (55%), Gaps = 22/195 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S +G + FNNAA WN
Sbjct: 18 ISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS--EGGV---FNNAAHVWN 72
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W I FGSF F +F AA FGSGW WL
Sbjct: 73 HTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWL------- 125
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
V N+ D KL +V + NA PL D +PLLT+DVWEHAY++D+ N RP Y+
Sbjct: 126 -VKNS--------DGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEH 176
Query: 181 FMDKLVSWEVVSKRL 195
F LV+WE V+K L
Sbjct: 177 FW-ALVNWEFVAKNL 190
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 110/195 (56%), Gaps = 23/195 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+SK+T+EYH+GKHH+ YV NLN + GTE DG +LE+++ S N G FNNAAQ +N
Sbjct: 22 ISKETIEYHYGKHHQTYVTNLNNLVEGTEHDGRNLEEIVKTS-NGG----IFNNAAQVFN 76
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W IE FGS + F E+F AA FGSGWAWL
Sbjct: 77 HTFYWNCLTPNKTEASSQLKAALIET-FGSVENFKEQFSKAAIATFGSGWAWL------- 128
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
V N + KL +V + NA PL + PLLT DVWEHAY++D+ N RP Y+
Sbjct: 129 -VKNT--------EGKLEIVTTSNAGCPLTENKKPLLTFDVWEHAYYIDYRNARPKYVEA 179
Query: 181 FMDKLVSWEVVSKRL 195
D +V+W+ VS++
Sbjct: 180 LWD-IVNWQFVSEQF 193
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|B Chain B, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|C Chain C, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
Length = 197
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 104/196 (53%), Gaps = 22/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+SK+TLE+H KHH YV NLN + GTE +G +LE+++ S G + FNNAAQ WN
Sbjct: 18 ISKETLEFHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKTS--SGGI---FNNAAQVWN 72
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W I FGSFD+F EEF + FGSGW WL KA
Sbjct: 73 HTFYWNCLSPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKA--- 129
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
D L + + A PL +PLLT DVWEHAY++D+ N RP Y+
Sbjct: 130 -------------DGSLALASTIGAGCPLTIGDTPLLTCDVWEHAYYIDYRNLRPKYVEA 176
Query: 181 FMDKLVSWEVVSKRLE 196
F + LV+W V+++ E
Sbjct: 177 FWN-LVNWAFVAEQFE 191
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 143 bits (360), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 110/201 (54%), Gaps = 20/201 (9%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGM---SLEDVIIVSYNKGNM-LPPFNNAA 56
+S L+ H+ HH+ YV+ LNK +VGTE +G+ SL D+++ ++N G+ FNNAA
Sbjct: 37 ISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLGNESLGDIVVKAHNSGSAGRAIFNNAA 96
Query: 57 QAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYK 116
Q WNH+F+W IE FGS + F F ++ QFGSGW WL Y
Sbjct: 97 QIWNHDFYWQSMKPNGGGNPPEKLREMIEHSFGSVEGFNNAFTTSGLGQFGSGWVWLVY- 155
Query: 117 ANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDFENRRP 175
E K L VV + NA +PL+ PL T+DVWEHAY+LD+ N R
Sbjct: 156 --------------DEDAKALKVVSTANADSPLLTQGQLPLATMDVWEHAYYLDYLNLRK 201
Query: 176 NYISVFMDKLVSWEVVSKRLE 196
YI VF++ L++W+ V RLE
Sbjct: 202 KYIDVFLEHLLNWDFVLGRLE 222
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 107/194 (55%), Gaps = 22/194 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+SK+T+E+H GKH + YV+NLNK I+GTE + L IV ++G + FNNA Q N
Sbjct: 19 ISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLN--TIVQKSEGGI---FNNAGQTLN 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H ++ I++ FGSF++F EEF +A T FGSGW WLA AN
Sbjct: 74 HNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLASDAN-- 131
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
KL + K PNA NP+ +PLLT DVWEHAY+L ++NRR +++
Sbjct: 132 --------------GKLSIEKEPNAGNPVRKGLNPLLTFDVWEHAYYLTYQNRRADHLKD 177
Query: 181 FMDKLVSWEVVSKR 194
+V W++V R
Sbjct: 178 LWS-IVDWDIVESR 190
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
pdb|3SDP|B Chain B, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
Length = 195
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 102/195 (52%), Gaps = 24/195 (12%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSYNKGNMLPPFNNAAQAW 59
+SK+TLEYH KHH YV NLN + GT E +G +LE+ IV + G + FNNAAQ W
Sbjct: 18 ISKETLEYHHDKHHNTYVVNLNNLVPGTPEFEGKTLEE--IVKSSSGGI---FNNAAQVW 72
Query: 60 NHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR 119
NH F+W I FGSFD+F EEF + FGSGWAWL
Sbjct: 73 NHTFYWNCLSPDAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWAWLV----- 127
Query: 120 LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYIS 179
+ D L + + A PL +PLLT DVWEHAY++D+ N RP Y+
Sbjct: 128 ------------KADGSLALCSTIGAGAPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVE 175
Query: 180 VFMDKLVSWEVVSKR 194
F + LV+W V++
Sbjct: 176 AFWN-LVNWAFVAEE 189
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
pdb|3TQJ|B Chain B, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
Length = 210
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 106/196 (54%), Gaps = 22/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S++TLEYH GKHHRAYV LNK I GT + LE++I S G + FNNAAQ WN
Sbjct: 19 ISQETLEYHHGKHHRAYVNKLNKLIEGTPFEKEPLEEIIRKS--DGGI---FNNAAQHWN 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W I++ FGS ++F F +A FGSGWAWL
Sbjct: 74 HTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLV------ 127
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
+ + KL V+ + NA NP+ PL+T DVWEHAY++D N RP Y++
Sbjct: 128 ----------KDNNGKLEVLSTVNARNPMTEGKKPLMTCDVWEHAYYIDTRNDRPKYVNN 177
Query: 181 FMDKLVSWEVVSKRLE 196
F ++V+W+ V K +
Sbjct: 178 FW-QVVNWDFVMKNFK 192
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|B Chain B, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|C Chain C, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|D Chain D, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1UER|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 106/194 (54%), Gaps = 22/194 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+SK+T+E+H GKH + YV+NLNK I+GTE + L IV ++G + FNNA Q N
Sbjct: 19 ISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLN--TIVQKSEGGI---FNNAGQTLN 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H ++ I++ FGSF++F EEF +A T FGSGW WLA AN
Sbjct: 74 HNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLASDAN-- 131
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
KL + K PNA NP+ +PLL DVWEHAY+L ++NRR +++
Sbjct: 132 --------------GKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYYLTYQNRRADHLKD 177
Query: 181 FMDKLVSWEVVSKR 194
+V W++V R
Sbjct: 178 LWS-IVDWDIVESR 190
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida.
pdb|2W7W|B Chain B, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida
Length = 194
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 105/196 (53%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S +TL+YH GKHH YV LN I GTE +G +LE++I S G + FNNAAQ WN
Sbjct: 19 ISAETLDYHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTS--TGGV---FNNAAQIWN 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W I+ FGSF+ F +F +A FGS W WL
Sbjct: 74 HTFYWNCLAPNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAINNFGSSWTWL------- 126
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWD-YSPLLTIDVWEHAYFLDFENRRPNYIS 179
V NA D L +V + NA PL + +PLLT+D+WEHAY++DF N RP+Y+
Sbjct: 127 -VKNA--------DGSLAIVNTSNAATPLTDEGVTPLLTVDLWEHAYYIDFRNVRPDYMG 177
Query: 180 VFMDKLVSWEVVSKRL 195
F LV+W V + L
Sbjct: 178 AFW-SLVNWSFVEENL 192
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LIO|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LJ9|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJ9|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJF|A Chain A, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|C Chain C, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|B Chain B, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|D Chain D, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
Length = 192
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 98/190 (51%), Gaps = 23/190 (12%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+SK+TLE+H GKHH YV LN I GT+ + SLE+++ S G + FNNAAQ WN
Sbjct: 18 ISKETLEFHHGKHHNTYVVKLNGLIPGTKFENKSLEEIVCSS--DGGV---FNNAAQIWN 72
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W I +GSFD F E A FGS W WL A
Sbjct: 73 HTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLVKLA--- 129
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWD-YSPLLTIDVWEHAYFLDFENRRPNYIS 179
D L +V + NA PL D +P+LT+D+WEHAY++D+ N RP+Y+
Sbjct: 130 -------------DGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLK 176
Query: 180 VFMDKLVSWE 189
F LV+WE
Sbjct: 177 GFW-SLVNWE 185
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus
pdb|2CW2|B Chain B, Crystal Structure Of Superoxide Dismutase From P. Marinus
Length = 226
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 99/193 (51%), Gaps = 24/193 (12%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIV-GTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAW 59
MS +TL YH KHH+ YV+ LN + + +LE +I K PFN AAQ +
Sbjct: 49 MSAETLTYHHDKHHQTYVDTLNSIAAENSTIASKTLEQIIKTETGK-----PFNQAAQVY 103
Query: 60 NHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR 119
NH FF+ I RDFGSF++F E+F +AA FGSGW WL
Sbjct: 104 NHTFFFNNLAPNGGGEPTGKIAELITRDFGSFEKFKEDFSAAAVGHFGSGWVWLI----- 158
Query: 120 LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYIS 179
D KL +V+ +A NP+ +PL+ IDVWEHAY++D+ N R Y+
Sbjct: 159 ------------ADDGKLKIVQGHDAGNPIRESKTPLMNIDVWEHAYYIDYRNARAQYVK 206
Query: 180 VFMDKLVSWEVVS 192
+ + LV+W+ V+
Sbjct: 207 NYWN-LVNWDFVN 218
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
pdb|3CEI|B Chain B, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
Length = 213
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 22/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S ++H GKHH+ YV NLN I GT+ + SL I++ + G + FNNAAQ +N
Sbjct: 18 LSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSL--FAILTKSSGGV---FNNAAQIYN 72
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H+F+W +E+DFGS ++F E+F +A T FGSGW W AY
Sbjct: 73 HDFYWDCLSPKATALSDELKGA-LEKDFGSLEKFKEDFIKSATTLFGSGWNWAAY----- 126
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
N+D +K+ ++++ NA P+ PLL +DVWEHAY++D +N RP Y+
Sbjct: 127 NLDT----------QKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEK 176
Query: 181 FMDKLVSWEVVSKRLE 196
F ++W VS+ E
Sbjct: 177 FYGH-INWHFVSQCYE 191
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 23/197 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S++TL +H+ KHH YV LN I T L SL D++ K + FNNAAQ WN
Sbjct: 27 ISEETLSFHYNKHHAGYVNKLNGLIKDTPLANKSLTDIL-----KESTGAIFNNAAQIWN 81
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W I+ DFGSF+ F ++F + FGSGW WLA
Sbjct: 82 HSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKDQFSNVLCGHFGSGWGWLAL----- 136
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDFENRRPNYIS 179
K+ KLV++++ +A NP+ + P+LT DVWEHAY++D+ N R +Y+
Sbjct: 137 -----------NKNNKLVILQTHDAGNPIKENTGIPILTCDVWEHAYYIDYRNDRLSYVK 185
Query: 180 VFMDKLVSWEVVSKRLE 196
+ + LV+W ++ L+
Sbjct: 186 AWWN-LVNWNFANENLK 201
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|B Chain B, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|C Chain C, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|2AW9|A Chain A, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
pdb|2AW9|B Chain B, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
Length = 229
Score = 123 bits (309), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 107/205 (52%), Gaps = 36/205 (17%)
Query: 5 TLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI-----IVSYNKGNMLPPFNNAAQAW 59
T+E H KHH+ YV+N NK + GTE + +E +I + + KG + NNA
Sbjct: 24 TMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADKKGALR---NNAGGHA 80
Query: 60 NHEFFWXXXXXXXXXXXXXXXXX----XIERDFGSFDRFLEEFKSAAATQFGSGWAWLAY 115
NH FW I FGSFD F ++F+ AA T+FGSGWAWL
Sbjct: 81 NHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVV 140
Query: 116 KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY------SPLLTIDVWEHAYFLD 169
KD KL VV + N NPL+ + +P+L +DVWEHAY+L+
Sbjct: 141 -----------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLN 183
Query: 170 FENRRPNYISVFMDKLVSWEVVSKR 194
++NRRP+Y++ F + +V+W+ VSKR
Sbjct: 184 YQNRRPDYLAAFWN-VVNWDEVSKR 207
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
pdb|3KKY|B Chain B, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
Length = 211
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 107/205 (52%), Gaps = 36/205 (17%)
Query: 5 TLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI-----IVSYNKGNMLPPFNNAAQAW 59
T+E H KHH+ YV+N NK + GTE + +E +I + + KG + NNA
Sbjct: 23 TMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADKKGALR---NNAGGHA 79
Query: 60 NHEFFWXXXXXXXXXXXXXXXXX----XIERDFGSFDRFLEEFKSAAATQFGSGWAWLAY 115
NH FW I FGSFD F ++F+ AA T+FGSGWAWL
Sbjct: 80 NHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVV 139
Query: 116 KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY------SPLLTIDVWEHAYFLD 169
KD KL VV + N NPL+ + +P+L +DVWEHAY+L+
Sbjct: 140 -----------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLN 182
Query: 170 FENRRPNYISVFMDKLVSWEVVSKR 194
++NRRP+Y++ F + +V+W+ VSKR
Sbjct: 183 YQNRRPDYLAAFWN-VVNWDEVSKR 206
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|C Chain C, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|D Chain D, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
Length = 231
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 107/205 (52%), Gaps = 36/205 (17%)
Query: 5 TLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI-----IVSYNKGNMLPPFNNAAQAW 59
T+E H KHH+ YV+N NK + GTE + +E +I + + KG + NNA
Sbjct: 43 TMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADKKGALR---NNAGGHA 99
Query: 60 NHEFFWXXXXXXXXXXXXXXXXX----XIERDFGSFDRFLEEFKSAAATQFGSGWAWLAY 115
NH FW I FGSFD F ++F+ AA T+FGSGWAWL
Sbjct: 100 NHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVV 159
Query: 116 KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY------SPLLTIDVWEHAYFLD 169
KD KL VV + N NPL+ + +P+L +DVWEHAY+L+
Sbjct: 160 -----------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLN 202
Query: 170 FENRRPNYISVFMDKLVSWEVVSKR 194
++NRRP+Y++ F + +V+W+ VSKR
Sbjct: 203 YQNRRPDYLAAFWN-VVNWDEVSKR 226
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 2 SKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNH 61
S +E H+ KHH+AYV+ LN + GT DG S+E++I+ N FN AAQ +NH
Sbjct: 60 SPRQMELHYTKHHKAYVDKLN-ALAGTTYDGKSIEEIILAVANDAEKKGLFNQAAQHFNH 118
Query: 62 EFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLN 121
F++ + FGS ++F + F A FGSGW WL
Sbjct: 119 TFYFRCITPNGKAMPKSFESA-VTAQFGSVEQFKDAFVQAGVNNFGSGWTWLC------- 170
Query: 122 VDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVF 181
VD PS K++ LV+ + NA PL P+L +DVWEHAY+ DFENRRP+Y+
Sbjct: 171 VD------PSNKNQ-LVIDNTSNAGCPLTKGLRPVLAVDVWEHAYYKDFENRRPDYLKEI 223
Query: 182 MDKLVSWEVVSK 193
++ WE V+K
Sbjct: 224 WS-VIDWEFVAK 234
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XUQ|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution
Length = 212
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 100/201 (49%), Gaps = 29/201 (14%)
Query: 3 KDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPPF------NNA 55
K+T+ H KHH Y+ NLN + G EL S+E+++ N +P NN
Sbjct: 31 KETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVA----NLNEVPEAIRTAVRNNG 86
Query: 56 AQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAY 115
NH FFW IE FGSFD F EEF A AT+FGSGWAWL
Sbjct: 87 GGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLV- 145
Query: 116 KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRP 175
V+N +L V +PN +PL +P++ +DVWEHAY+L+++NRRP
Sbjct: 146 ------VNNG----------ELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRP 189
Query: 176 NYISVFMDKLVSWEVVSKRLE 196
+YI F + +V W KR +
Sbjct: 190 DYIGAFWN-VVDWNAAEKRYQ 209
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|E Chain E, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|F Chain F, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|G Chain G, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|H Chain H, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|I Chain I, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|J Chain J, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|K Chain K, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|L Chain L, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
Length = 230
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 97/196 (49%), Gaps = 19/196 (9%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
MS LE H+ KHH AYV+ LN +G +G ++E++I+ + FN AAQ +N
Sbjct: 50 MSPRQLELHYSKHHSAYVDKLN--TLGKGYEGKTIEEIILATTGINESKVMFNQAAQHFN 107
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H FFW I + FGS D F+ F+ A FGSGW WL
Sbjct: 108 HSFFWKCLSPGGKPMPKTLENA-IAKQFGSVDDFMVSFQQAGVNNFGSGWTWLC------ 160
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
V+P + K+L++ + NA PL P+ T DVWEHAY+ DFENRR +Y+
Sbjct: 161 -----VDP----QTKELLIDSTSNAGCPLTSGLRPIFTADVWEHAYYKDFENRRADYLKE 211
Query: 181 FMDKLVSWEVVSKRLE 196
++V WE V E
Sbjct: 212 LW-QIVDWEFVCHMYE 226
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 23/197 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S++TL +H+ KHH YV LN I T SL D++ K + FNNAAQ WN
Sbjct: 19 ISEETLNFHYNKHHAGYVNKLNTLIKDTPFAEKSLLDIV-----KESSGAIFNNAAQIWN 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W I+ DFGSF+ F E+F + FGSGW WLA N
Sbjct: 74 HTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNN- 132
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDFENRRPNYIS 179
KLV++++ +A NP+ + P+LT D+WEHAY++D+ N R +Y+
Sbjct: 133 ---------------KLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRASYVK 177
Query: 180 VFMDKLVSWEVVSKRLE 196
+ + LV+W ++ L+
Sbjct: 178 AWWN-LVNWNFANENLK 193
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 23/197 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S++TL +H+ KHH YV LN I T SL D++ K + FNNAAQ WN
Sbjct: 18 ISEETLNFHYNKHHAGYVNKLNTLIKDTPFAEKSLLDIV-----KESSGAIFNNAAQIWN 72
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W I+ DFGSF+ F E+F + FGSGW WLA N
Sbjct: 73 HTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNN- 131
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDFENRRPNYIS 179
KLV++++ +A NP+ + P+LT D+WEHAY++D+ N R +Y+
Sbjct: 132 ---------------KLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRASYVK 176
Query: 180 VFMDKLVSWEVVSKRLE 196
+ + LV+W ++ L+
Sbjct: 177 AWWN-LVNWNFANENLK 192
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 23/197 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S++TL +H+ KHH YV LN I T SL +++ K + FNNAAQ WN
Sbjct: 19 ISEETLNFHYNKHHAGYVNKLNGLIKDTPFATKSLVEIM-----KESTGAIFNNAAQIWN 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H F+W I+ DFGSF+ F EF + FGSGW WL N
Sbjct: 74 HSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKNEFSNVLCGHFGSGWGWLVLNNNN- 132
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDFENRRPNYIS 179
KLV++++ +A NP+ + P+LT D+WEHAY++D+ N RP+Y+
Sbjct: 133 ---------------KLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRPSYVK 177
Query: 180 VFMDKLVSWEVVSKRLE 196
+ + LV+W ++ L+
Sbjct: 178 AWWN-LVNWNFANENLK 193
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|B Chain B, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|C Chain C, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|D Chain D, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|E Chain E, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|F Chain F, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|G Chain G, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|H Chain H, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
Length = 202
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 106/196 (54%), Gaps = 21/196 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IVSYNKGNMLPPFNNAAQ 57
+ K+T+ H KHH YV NLNK + G T L S+E+++ + S + NN
Sbjct: 19 IDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGG 78
Query: 58 AWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKA 117
NH+ FW I FGSFD+F E+F +AAA +FGSGWAWL
Sbjct: 79 HANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLV--- 135
Query: 118 NRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNY 177
V+N KL + +PN +PL +P+L +DVWEHAY+L+++NRRP+Y
Sbjct: 136 ----VNNG----------KLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRPDY 181
Query: 178 ISVFMDKLVSWEVVSK 193
IS F + +V+W+ V++
Sbjct: 182 ISAFWN-VVNWDEVAR 196
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|B Chain B, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|C Chain C, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|D Chain D, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
Length = 197
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 96/191 (50%), Gaps = 23/191 (12%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQI-VGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAW 59
+SK+ + +H+ KHH YV LN L S+E++I KG P FN AAQ +
Sbjct: 20 ISKEQVTFHYDKHHMGYVTKLNAAANSNPALAAKSVEEIIRTE--KG---PIFNLAAQIF 74
Query: 60 NHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR 119
NH F+W I FGSF +F EEF +AA FGSGWAWL
Sbjct: 75 NHNFYWESMSPNGGGEPSGKLAEAIRASFGSFAKFKEEFTNAAVGHFGSGWAWLVQDTTT 134
Query: 120 LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV-WDYSPLLTIDVWEHAYFLDFENRRPNYI 178
KKL V ++ +A PL D P+LT DVWEHAY++D++N RP Y+
Sbjct: 135 ---------------KKLKVFQTHDAGCPLTEADLKPILTCDVWEHAYYIDYKNDRPAYV 179
Query: 179 SVFMDKLVSWE 189
F + +V+W+
Sbjct: 180 QTFWN-VVNWD 189
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
Length = 205
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 101/206 (49%), Gaps = 37/206 (17%)
Query: 3 KDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP------FNNA 55
K T+E H KHH+ YV N N + E + +E++I K + LP NNA
Sbjct: 20 KQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 56 AQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAY 115
NH FW IERDFGS D F EF+ AAA++FGSGWAWL
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 116 KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDVWEHAYFLD 169
K + KL VV + N +PL+ + P++ +DVWEHAYFL
Sbjct: 134 KGD-----------------KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYFLK 176
Query: 170 FENRRPNYISVFMDKLVSWEVVSKRL 195
F+NRRP+YI F + +V+W+ + R
Sbjct: 177 FQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
Length = 205
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 101/206 (49%), Gaps = 37/206 (17%)
Query: 3 KDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP------FNNA 55
K T+E H KHH+ YV N N + E + +E++I K + LP NNA
Sbjct: 20 KQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 56 AQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAY 115
NH FW IERDFGS D F EF+ AAA++FGSGWAWL
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 116 KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDVWEHAYFLD 169
K + KL VV + N +PL+ + P++ +DVWEHAY+L
Sbjct: 134 KGD-----------------KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLK 176
Query: 170 FENRRPNYISVFMDKLVSWEVVSKRL 195
F+NRRP+YI F + +V+W+ + R
Sbjct: 177 FQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 101/206 (49%), Gaps = 37/206 (17%)
Query: 3 KDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP------FNNA 55
K T+E H KHH+ YV N N + E + +E++I K + LP NNA
Sbjct: 20 KQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 56 AQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAY 115
NH FW IERDFGS D F EF+ AAA++FGSGWAWL
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 116 KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDVWEHAYFLD 169
K + KL VV + N +PL+ + P++ +DVWEHAY+L
Sbjct: 134 KGD-----------------KLAVVSTANLDSPLMGEAISGASGFPIMGLDVWEHAYYLK 176
Query: 170 FENRRPNYISVFMDKLVSWEVVSKRL 195
F+NRRP+YI F + +V+W+ + R
Sbjct: 177 FQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 101/206 (49%), Gaps = 37/206 (17%)
Query: 3 KDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP------FNNA 55
K T+E H KHH+ YV N N + E + +E++I K + LP NNA
Sbjct: 20 KQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 56 AQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAY 115
NH FW IERDFGS D F EF+ AAA++FGSGWAWL
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 116 KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDVWEHAYFLD 169
K + KL VV + N +PL+ + P++ +DVWEHAY+L
Sbjct: 134 KGD-----------------KLAVVSTANHDSPLMGEAISGASGFPIMGLDVWEHAYYLK 176
Query: 170 FENRRPNYISVFMDKLVSWEVVSKRL 195
F+NRRP+YI F + +V+W+ + R
Sbjct: 177 FQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
pdb|2GPC|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
Length = 194
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQI-VGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAW 59
+SK + H+ KHH+ YV LN + L S+E++I KG P FN AAQ +
Sbjct: 19 LSKQQVTLHYDKHHQGYVTKLNAAAQTNSALATKSIEEIIRTE--KG---PIFNLAAQIF 73
Query: 60 NHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR 119
NH F+W I FGSF +F EEF + A FGSGWAWL N
Sbjct: 74 NHTFYWESMXPNGGGEPTGKVADEINASFGSFAKFKEEFTNVAVGHFGSGWAWLVKDTN- 132
Query: 120 LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVW-DYSPLLTIDVWEHAYFLDFENRRPNYI 178
KL V ++ +A PL + PLLT DVWEHAY++D++N R Y+
Sbjct: 133 --------------SGKLKVYQTHDAGCPLTEPNLKPLLTCDVWEHAYYVDYKNDRAAYV 178
Query: 179 SVFMDKLVSWEVVSKRL 195
F + +V+W+ V ++L
Sbjct: 179 QTFWN-VVNWKNVERQL 194
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 101/206 (49%), Gaps = 37/206 (17%)
Query: 3 KDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP------FNNA 55
K T+E H KHH+ +V N N + E + +E++I K + LP NNA
Sbjct: 20 KQTMEIHHTKHHQTFVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 56 AQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAY 115
NH FW IERDFGS D F EF+ AAA++FGSGWAWL
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 116 KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDVWEHAYFLD 169
K + KL VV + N +PL+ + P++ +DVWEHAY+L
Sbjct: 134 KGD-----------------KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLK 176
Query: 170 FENRRPNYISVFMDKLVSWEVVSKRL 195
F+NRRP+YI F + +V+W+ + R
Sbjct: 177 FQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 100/206 (48%), Gaps = 37/206 (17%)
Query: 3 KDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP------FNNA 55
K T+E H K H+ YV N N + E + +E++I K + LP NNA
Sbjct: 20 KQTMEIHHTKAHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 56 AQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAY 115
NH FW IERDFGS D F EF+ AAA++FGSGWAWL
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 116 KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDVWEHAYFLD 169
K + KL VV + N +PL+ + P++ +DVWEHAY+L
Sbjct: 134 KGD-----------------KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLK 176
Query: 170 FENRRPNYISVFMDKLVSWEVVSKRL 195
F+NRRP+YI F + +V+W+ + R
Sbjct: 177 FQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 99/181 (54%), Gaps = 20/181 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IVSYNKGNMLPPFNNAAQ 57
+ K+T++ H KH++AYV+ LN + EL SL +++ + S K NNA
Sbjct: 22 IDKETMKLHHDKHYQAYVDKLNAALEKYPELYNYSLCELLQNLDSLPKDIATTVRNNAGG 81
Query: 58 AWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKA 117
A+NH+FF+ I+RDFGSF++F +EF+ +A FGSGWAWL
Sbjct: 82 AYNHKFFFDIMTPEKTIPSESLKEA-IDRDFGSFEKFKQEFQKSALDVFGSGWAWLV--- 137
Query: 118 NRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNY 177
+ KD KL ++ +PN +P+ + +P++ +DVWEHAY+L ++NRR Y
Sbjct: 138 -------------ATKDGKLSIMTTPNQDSPVSKNLTPIIGLDVWEHAYYLKYQNRRNEY 184
Query: 178 I 178
I
Sbjct: 185 I 185
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVI--IVSYNKGNMLPPFNNAAQ 57
+ K+T+ H KHH YV LN + G E L SL D+I + + + NN
Sbjct: 19 IDKETMNIHHTKHHNTYVTKLNGALEGHEDLKNKSLNDLISNLDAVPENIRTAVRNNGGG 78
Query: 58 AWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKA 117
NH FW I +GSF++F EEF +AAA +FGSGWAWL
Sbjct: 79 HANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKFQEEFAAAAAGRFGSGWAWLV--- 135
Query: 118 NRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNY 177
V+N ++ ++ +P NPL+ P+L +DVWEHAY+L ++N+RP+Y
Sbjct: 136 ----VNNG----------EIEIMSTPIQDNPLMEGKKPILGLDVWEHAYYLKYQNKRPDY 181
Query: 178 ISVFMDKLVSWEVVSKR 194
IS F + +V+W+ V+ +
Sbjct: 182 ISAFWN-VVNWDEVAAQ 197
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 20/199 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IVSYNKGNMLPPFNNAAQ 57
+ +T++ H KHH AYV NLN + EL S+E ++ + S + NN
Sbjct: 54 IDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNSVPEDIRTTVRNNGGG 113
Query: 58 AWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKA 117
NH FW I + FGSF+ F ++F A +FGSGW WL
Sbjct: 114 HLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAGGDRFGSGWVWLVR-- 171
Query: 118 NRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNY 177
NP +L VV +PN NP++ P++ DVWEHAY+L ++NRRP Y
Sbjct: 172 ---------NP-----QGQLQVVSTPNQDNPIMEGSYPIMGNDVWEHAYYLRYQNRRPEY 217
Query: 178 ISVFMDKLVSWEVVSKRLE 196
++ + + +V+W +++R +
Sbjct: 218 LNNWWN-VVNWSEINRRTQ 235
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|1MNG|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1MNG|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 203
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVI--IVSYNKGNMLPPFNNAAQ 57
+ T+E H KHH AYV NLN + L G+ +E ++ + + + NN
Sbjct: 20 IDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGG 79
Query: 58 AWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKA 117
NH FW I+ FG F E+ AA +FGSGWAWL
Sbjct: 80 HLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLV--- 136
Query: 118 NRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNY 177
+PF KL V+ +PN NP++ ++P++ IDVWEHAY+L ++NRR +Y
Sbjct: 137 --------KDPF-----GKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRADY 183
Query: 178 ISVFMDKLVSWEVVSK 193
+ + +++W+V +
Sbjct: 184 LQAIWN-VLNWDVAEE 198
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XRE|B Chain B, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution
Length = 217
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 21/197 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IVSYNKGNMLPPFNNAAQ 57
+ +TL H GKHH YV NLN + +EL SLE+++ + + K + NN
Sbjct: 29 IDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLETLPKEIVTAVRNNGGG 88
Query: 58 AWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKA 117
+ H FW I+ F +FD ++ AA ++FGSG+ WL
Sbjct: 89 HYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDG 148
Query: 118 NRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNY 177
++L V+ +PN PL PLL IDVWEHAY+L ++NRRP +
Sbjct: 149 -----------------EELSVMSTPNQDTPLQEGKIPLLVIDVWEHAYYLKYQNRRPEF 191
Query: 178 ISVFMDKLVSWEVVSKR 194
++ + V+W+ V+++
Sbjct: 192 VTNWWHT-VNWDRVNEK 207
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH AYV NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQTALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|B Chain B, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|C Chain C, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|D Chain D, Crystal Structure Of Human Mnsod Y166f Mutant
Length = 198
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH AYV NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAYFL ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYFLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH AYV NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKER- 132
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS--PLLTIDVWEHAYFLDFENRRPNYI 178
L + PNA +PL PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 133 --------------GHLQIAACPNA-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1MSD|B Chain B, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|2ADQ|B Chain B, Human Manganese Superoxide Dismutase
Length = 198
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH AYV NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
Length = 199
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH AYV NLN V E +L + + FN N
Sbjct: 19 INAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 74
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 75 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 134
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 135 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 178
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 179 KAIWN-VINWENVTER 193
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH AYV NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 121 NVDNAVNPF--PSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
++ A P P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNNDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKA|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 25/197 (12%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN-NAAQAW 59
++ ++ H KHH AYV NLN V E +L + + + + P N
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTA--QIALQPALKANGGGHI 72
Query: 60 NHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR 119
NH FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 73 NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKER 132
Query: 120 --LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNY 177
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y
Sbjct: 133 GHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDY 176
Query: 178 ISVFMDKLVSWEVVSKR 194
+ + +++WE V++R
Sbjct: 177 LKAIWN-VINWENVTER 192
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKC|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 25/197 (12%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN-NAAQAW 59
++ ++ H KHH AYV NLN V E +L + + + + P N
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTA--QIALQPALKLNGGGHI 72
Query: 60 NHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR 119
NH FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 73 NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKER 132
Query: 120 --LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNY 177
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y
Sbjct: 133 GHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDY 176
Query: 178 ISVFMDKLVSWEVVSKR 194
+ + +++WE V++R
Sbjct: 177 LKAIWN-VINWENVTER 192
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
Length = 198
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH A+V NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAHVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3T|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH AYV NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVW+HAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWDHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH A+V NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAFVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
pdb|1PM9|B Chain B, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
Length = 198
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H K+H AYV NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKNHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAYFL ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYFLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3S|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH AYV NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVW HAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWAHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H K H AYV NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKQHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase
Length = 198
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH A V NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAXVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|B Chain B, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|C Chain C, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|D Chain D, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
Length = 198
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H K+H AYV NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKNHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZUQ|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH A V NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAVVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZSP|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH A V NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAAVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH A V NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAANVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H K H AYV NLN V E +L + + FN N
Sbjct: 19 INAQIMQLHHSKVHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 74
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 75 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 134
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 135 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 178
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 179 KAIWN-VINWENVTER 193
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH AYV NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDV EHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVAEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
pdb|1SZX|B Chain B, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
Length = 198
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH A+V NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAFVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSG+ WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGFGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHAY+L ++N RP+Y+
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC6|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 198
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 89/204 (43%), Gaps = 40/204 (19%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNM-----LPP---F 52
+S + ++ H KHH YV NLN+ +E+ + + +KGN+ L P F
Sbjct: 19 ISHEIMQLHHQKHHATYVNNLNQ-----------IEEKLHEAVSKGNVKEAIALQPALKF 67
Query: 53 NNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAW 112
N NH FW I+ DFGS D ++ ++ GSGW W
Sbjct: 68 NGGGHI-NHSIFWTNLAKDGGEPSAELLTA-IKSDFGSLDNLQKQLSASTVAVQGSGWGW 125
Query: 113 LAY--KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDF 170
L Y K L V N P E LV PL IDVWEHAY+L +
Sbjct: 126 LGYCPKGKILKVATCANQDPLEATTGLV----------------PLFGIDVWEHAYYLQY 169
Query: 171 ENRRPNYISVFMDKLVSWEVVSKR 194
+N RP+Y++ K+ +W+ VS+R
Sbjct: 170 KNVRPDYVNAIW-KIANWKNVSER 192
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|B Chain B, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|C Chain C, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|D Chain D, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|E Chain E, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|F Chain F, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
Length = 205
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 34/204 (16%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVII------VSYNKGNMLPPFNN 54
+S++ L H KHH+AYV+ N + + S DV I +S++ G +
Sbjct: 25 ISREQLTIHHQKHHQAYVDGANALLRKLDEARESDTDVDIKAALKELSFHVGGYVL---- 80
Query: 55 AAQAWNHEFFWXXX--XXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAW 112
H FFW IE+DFGSF+RF +EF AA + GSGWA
Sbjct: 81 ------HLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFRKEFSQAAISAEGSGWAV 134
Query: 113 LAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 172
L Y ++ +L +++ ++ + LL +DVWEHAY++D+ N
Sbjct: 135 LTY---------------CQRTDRLFIMQVEKHNVNVIPHFRILLVLDVWEHAYYIDYRN 179
Query: 173 RRPNYISVFMDKLVSWEVVSKRLE 196
RP+Y+ F + +V+W+ V KR E
Sbjct: 180 VRPDYVEAFWN-IVNWKEVEKRFE 202
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 195
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 88/202 (43%), Gaps = 39/202 (19%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNM-----LPP---F 52
+S + ++ H KHH YV NLN+ +E+ + + +KGN+ L P F
Sbjct: 19 ISHEIMQLHHQKHHATYVNNLNQ-----------IEEKLHEAVSKGNLKEAIALQPALKF 67
Query: 53 NNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAW 112
N NH FW I+RDFGS D + GSGW W
Sbjct: 68 NGGGHI-NHSIFWTNLAKDGGEPSKELMDT-IKRDFGSLDNLQKRLSDITIAVQGSGWGW 125
Query: 113 LAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 172
L Y +KDK L + N +PL PL IDVWEHAY+L ++N
Sbjct: 126 LGY---------------CKKDKILKIATCANQ-DPLE-GMVPLFGIDVWEHAYYLQYKN 168
Query: 173 RRPNYISVFMDKLVSWEVVSKR 194
RP+Y+ K+ +W+ +S+R
Sbjct: 169 VRPDYVHAIW-KIANWKNISER 189
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XIL|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH A+V NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAFVNNLN---VTEEKXQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHA L +N RP+ +
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAXXLQXKNVRPDXL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XDC|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH A V NLN V E +L + + FN N
Sbjct: 18 INAQIMQLHHSKHHAAXVNNLN---VTEEKXQEALAKGDVTAQIALQPALKFNGGGHI-N 73
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR- 119
H FW I+RDFGSFD+F E+ +A+ GSGW WL + R
Sbjct: 74 HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERG 133
Query: 120 -LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
L + N P + L+ PLL IDVWEHA L +N RP+ +
Sbjct: 134 HLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAXXLQXKNVRPDXL 177
Query: 179 SVFMDKLVSWEVVSKR 194
+ +++WE V++R
Sbjct: 178 KAIWN-VINWENVTER 192
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 22/199 (11%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S T+++H+ KHH+ Y++ L G ++L+ ++ + ++ FN A Q +N
Sbjct: 95 ISAATVDFHYNKHHQGYIQKL-LDATGLPESRINLKSLVTLGPDRAGE-NVFNAAGQIYN 152
Query: 61 HEFFWXXXXXXXXXXXXX--XXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKAN 118
H +W I +G+ D E F A FGSGW WL +
Sbjct: 153 HNMYWLSMVPTSGSGRHVPPRLLKLIRARWGNVDEMKENFMRKATALFGSGWIWLVWDT- 211
Query: 119 RLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS--PLLTIDVWEHAYFLDFENRRPN 176
++++L +V + +A +PL D PL T DVWEHAY+LD+++ R
Sbjct: 212 --------------RERRLDLVGTKDAHSPLSEDAGKIPLFTCDVWEHAYYLDYQHDRAA 257
Query: 177 YISVFMDKLVSWEVVSKRL 195
Y++ + L++WE L
Sbjct: 258 YLTRWWS-LINWEFADSNL 275
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From
Acidilobus Saccharovorans
Length = 223
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 25/200 (12%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPFNNAAQA 58
+S +TL YH KHH YV N + E L+G L D+ + + ++ FN
Sbjct: 35 ISAETLRYHHDKHHLGYVNGANAALDKLEKYLNG-QLTDIDVRAVSRDF---EFNYGGHI 90
Query: 59 WNHEFFWXXXXXXXXXXXXXXXXX--XIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYK 116
H +W I + FGSFD+F + F AA G GWA LAY
Sbjct: 91 L-HTLYWLNMAPKGKGGGTPGGAIGDAINKFFGSFDKFKKLFGDAAKNVEGVGWAILAYD 149
Query: 117 ANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPN 176
P D +++ V+ N N + + PLL +DV+EHAY++D+ N R
Sbjct: 150 -------------PVTGDLRILQVEKHN--NVVTTNLIPLLAVDVFEHAYYIDYRNDRAK 194
Query: 177 YISVFMDKLVSWEVVSKRLE 196
Y+ + D L++W+ V R +
Sbjct: 195 YVDSWWD-LINWDDVEARYQ 213
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 24/196 (12%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S E H KHH YV+ N + E + + ED + N+ N+ FN A N
Sbjct: 20 ISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAILLNEKNL--AFNLAGHV-N 75
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYK--AN 118
H +W I FGSFD+F +F +AA T GSGWA L + N
Sbjct: 76 HTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGN 135
Query: 119 RLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
+L + + + + L +V PLL +D+WEHA++L ++N + ++
Sbjct: 136 KLLI---FQVYDHQTNFPLAIV--------------PLLLLDMWEHAFYLQYKNVKVDFA 178
Query: 179 SVFMDKLVSWEVVSKR 194
F + +V+W V R
Sbjct: 179 KAFWN-VVNWADVQSR 193
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 85/194 (43%), Gaps = 20/194 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S E H KHH YV+ N + E + + ED + N+ N+ FN A N
Sbjct: 20 ISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAILLNEKNL--AFNLAGHV-N 75
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H +W I FGSFD+F +F +AA T GSGWA L +
Sbjct: 76 HTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGW----- 130
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
D N KL++ + + PLL +D+WEHA++L ++N + ++
Sbjct: 131 --DTLGN--------KLLIFQVYDQQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKA 180
Query: 181 FMDKLVSWEVVSKR 194
F + +V+W V R
Sbjct: 181 FWN-VVNWADVQSR 193
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 85/194 (43%), Gaps = 20/194 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S E H KHH YV+ N + E + + ED + N+ N+ FN A N
Sbjct: 20 ISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAILLNEKNL--AFNLAGHV-N 75
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H +W I FGSFD+F +F +AA T GSGWA L +
Sbjct: 76 HTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGW----- 130
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
D N KL++ + + PLL +D+WEHA++L ++N + ++
Sbjct: 131 --DTLGN--------KLLIFQVYDEQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKA 180
Query: 181 FMDKLVSWEVVSKR 194
F + +V+W V R
Sbjct: 181 FWN-VVNWADVQSR 193
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|B Chain B, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|C Chain C, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|D Chain D, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
Length = 207
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 85/194 (43%), Gaps = 20/194 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S E H KHH YV+ N + E + + ED + N+ N+ FN A N
Sbjct: 20 ISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAILLNEKNL--AFNLAGHV-N 75
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H +W I FGSFD+F +F +AA T GSGWA L +
Sbjct: 76 HTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGW----- 130
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
D N KL++ + + PLL +D+WEHA++L ++N + ++
Sbjct: 131 --DTLGN--------KLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKA 180
Query: 181 FMDKLVSWEVVSKR 194
F + +V+W V R
Sbjct: 181 FWN-VVNWADVQSR 193
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 20/194 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S E H KHH YV+ N + E + + ED + N+ N+ FN A N
Sbjct: 20 ISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAILLNEKNL--AFNLAGHV-N 75
Query: 61 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRL 120
H +W I FGSFD+F +F +AA T G GWA L +
Sbjct: 76 HTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGCGWAALGW----- 130
Query: 121 NVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISV 180
D N KL++ + + PLL +D+WEHA++L ++N + ++
Sbjct: 131 --DTLGN--------KLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKA 180
Query: 181 FMDKLVSWEVVSKR 194
F + +V+W V R
Sbjct: 181 FWN-VVNWADVQSR 193
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK2|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK3|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
Length = 214
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 26/198 (13%)
Query: 3 KDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
++ ++ H KHH YV+ N + E L G DV V + FN A
Sbjct: 25 EEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAVMRDFS-----FNYAGHIM- 78
Query: 61 HEFFW--XXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKAN 118
H FW IE+ FG F++F F +AA T G GW LA+
Sbjct: 79 HTIFWPNMAPPGKGGGTPGGRVADLIEKQFGGFEKFKALFSAAAKTVEGVGWGVLAFD-- 136
Query: 119 RLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYI 178
P ++ +++ V+ N + + P+L IDVWEHAY+L ++N R +Y+
Sbjct: 137 -----------PLTEELRILQVEKHNVL--MTAGLVPILVIDVWEHAYYLQYKNDRGSYV 183
Query: 179 SVFMDKLVSWEVVSKRLE 196
+ + +V+W+ V KRLE
Sbjct: 184 ENWWN-VVNWDDVEKRLE 200
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|B Chain B, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|C Chain C, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|D Chain D, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
Length = 222
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 36/205 (17%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYN-----KGNMLPPFN 53
+S + ++ H KHH+ YV N + E G + D+ V + G++L
Sbjct: 34 ISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRAVLRDLSFHLNGHIL---- 89
Query: 54 NAAQAWNHEFFW--XXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 111
H FW I + FGSF++F EEF AA G GWA
Sbjct: 90 -------HSIFWPNMAPPGKGGGKPGGKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWA 142
Query: 112 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFE 171
L Y+ P E+ ++ ++ N ++ D LL +DVWEHAY+L ++
Sbjct: 143 ILVYE-------------PLEEQLLILQIEKHNLMHAA--DAQVLLALDVWEHAYYLQYK 187
Query: 172 NRRPNYISVFMDKLVSWEVVSKRLE 196
N R +Y+ + + +V+W+ V +RL+
Sbjct: 188 NDRGSYVDNWWN-VVNWDDVERRLQ 211
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR4|B Chain B, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR5|A Chain A, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AR5|B Chain B, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AVM|A Chain A, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1AVM|B Chain B, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1BS3|A Chain A, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BS3|B Chain B, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BSM|B Chain B, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BT8|A Chain A, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1BT8|B Chain B, P.Shermanii Sod(Fe+3) Ph 10.0
Length = 201
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 26/199 (13%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS--LEDVIIVSYNKGNMLPPFNNAAQA 58
+S + +E H KHH+AYV+ N T LD ++ + + NK FN A
Sbjct: 19 ISGEIMELHHDKHHKAYVDGAN-----TALDKLAEARDKADFGAINKLEKDLAFNLAGHV 73
Query: 59 WNHEFFWXXXXXXXXX--XXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYK 116
NH FW I+ FGSFD +F +AA GSGWA L +
Sbjct: 74 -NHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLVW- 131
Query: 117 ANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPN 176
+P K++ ++ + N L PLL +D+WEHA++L ++N + +
Sbjct: 132 ----------DPL----GKRINTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYKNVKGD 177
Query: 177 YISVFMDKLVSWEVVSKRL 195
Y+ + + +V+W+ V+ R
Sbjct: 178 YVKSWWN-VVNWDDVALRF 195
>pdb|1P7G|A Chain A, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|B Chain B, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|C Chain C, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|D Chain D, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|E Chain E, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|F Chain F, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|G Chain G, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|H Chain H, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|I Chain I, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|J Chain J, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|K Chain K, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|L Chain L, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|M Chain M, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|N Chain N, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|O Chain O, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|P Chain P, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|Q Chain Q, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|R Chain R, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|S Chain S, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|T Chain T, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|U Chain U, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|V Chain V, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|W Chain W, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|X Chain X, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
Length = 222
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 16/113 (14%)
Query: 84 IERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSP 143
I + FGSF++F EEF AA G GWA L Y+ P E+ ++ ++
Sbjct: 115 INKFFGSFEKFKEEFSQAAKNVEGVGWAILVYE-------------PLEEQLLILQIEKH 161
Query: 144 NAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 196
N + D LL +DVWEHAY+L ++N R +Y+ + + +V+W+ V +RL+
Sbjct: 162 NLXHAA--DAQVLLALDVWEHAYYLQYKNDRGSYVDNWWN-VVNWDDVERRLQ 211
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 25/181 (13%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 60
+S+ +E H KHH+ YV LN + + + + +VS + FN N
Sbjct: 32 ISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEATDVPKLVSVQQAIK---FNGGGHI-N 87
Query: 61 HEFFWXXXXXXXXXXXXXXXX----XXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYK 116
H FW IE+ +GSFD+F + F + GSGW WL
Sbjct: 88 HSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNTTLLGIQGSGWGWLVTD 147
Query: 117 ANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPN 176
+ +D + + + +P+ +P+ +D+WEHAY+L + N + +
Sbjct: 148 GPKGKLD----------------ITTTHDQDPVT-GAAPVFGVDMWEHAYYLQYLNDKAS 190
Query: 177 Y 177
Y
Sbjct: 191 Y 191
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site.
pdb|1WB8|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site
Length = 210
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 21/199 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN-NAAQAW 59
+SKD ++ H+ HH+ YV N + L+ + D+ Y+ ++ N
Sbjct: 25 ISKDIIDVHYNGHHKGYVNGANSLL--ERLEKVVKGDLQTGQYDIQGIIRGLTFNINGHK 82
Query: 60 NHEFFWXXXXXXXXXXXXXXXXXX--IERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKA 117
H +W I + +GSFDRF + F A + G+GWA L Y
Sbjct: 83 LHALYWENMAPSGKGGGKPGGALADLINKQYGSFDRFKQVFTETANSLPGTGWAVLYYDT 142
Query: 118 NRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNY 177
N L ++ N + + +L +D +EHAY+L ++N+R +Y
Sbjct: 143 ESGN---------------LQIMTFENHFQNHIAEIPIILILDEFEHAYYLQYKNKRADY 187
Query: 178 ISVFMDKLVSWEVVSKRLE 196
++ + + +V+W+ K+L+
Sbjct: 188 VNAWWN-VVNWDAAEKKLQ 205
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From
Saccharomyces Cerevisiae
Length = 215
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVSYNKGN---MLPPFNN-- 54
+S E H+ KHH+ YV N T +D L D++ + N M+ N
Sbjct: 26 ISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMIAIQQNIK 80
Query: 55 --AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAATQFGSG 109
NH FW I+ FGS D ++ + A GSG
Sbjct: 81 FHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSG 140
Query: 110 WAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTIDVWEHAY 166
WA++ V N N KL VV++ N PLV PL+ ID WEHAY
Sbjct: 141 WAFI--------VKNLSN------GGKLDVVQTYNQDTVTGPLV----PLVAIDAWEHAY 182
Query: 167 FLDFENRRPNYISVFMDKLVSWEVVSKRLE 196
+L ++N++ +Y + +V+W+ S+R +
Sbjct: 183 YLQYQNKKADYFKAIWN-VVNWKEASRRFD 211
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces
Cerevisiae
Length = 215
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVSYNKGN---MLPPFNN-- 54
+S E H+ KHH+ YV N T +D L D++ + N M+ N
Sbjct: 26 ISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMIAIQQNIK 80
Query: 55 --AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAATQFGSG 109
NH FW I+ FGS D ++ + A GSG
Sbjct: 81 FHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSG 140
Query: 110 WAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTIDVWEHAY 166
WA++ V N N KL VV++ N PLV PL+ ID WEHAY
Sbjct: 141 WAFI--------VKNLSN------GGKLDVVQTYNQDTVTGPLV----PLVAIDAWEHAY 182
Query: 167 FLDFENRRPNYISVFMDKLVSWEVVSKRLE 196
+L ++N++ +Y + +V+W+ S+R +
Sbjct: 183 YLQYQNKKADYFKAIWN-VVNWKEASRRFD 211
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
Length = 210
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 21/199 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN-NAAQAW 59
+SKD ++ H+ HH+ YV N + L+ + D+ Y+ +L N
Sbjct: 25 ISKDIIDVHYNGHHKGYVNGANSLL--DRLEKLIKGDLPQGQYDLQGILRGLTFNINGHK 82
Query: 60 NHEFFWXXXXXXXXXXXXXXXXXX--IERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKA 117
H +W I++ +GSFDRF + F +A + GSGW L Y
Sbjct: 83 LHAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFDRFKQVFSESANSLPGSGWTVLYY-- 140
Query: 118 NRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNY 177
DN + L ++ N + + +L +D +EHAY+L ++N+R +Y
Sbjct: 141 -----DN--------ESGNLQIMTVENHFMNHIAELPVILIVDEFEHAYYLQYKNKRGDY 187
Query: 178 ISVFMDKLVSWEVVSKRLE 196
++ + + +V+W+ KRL+
Sbjct: 188 LNAWWN-VVNWDDAEKRLQ 205
>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic
Bacterium
Length = 212
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 28/202 (13%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNK---QIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQ 57
+S + +E H+ H++ YV N+ ++ S + Y + + FN
Sbjct: 19 ISNEQIEPHFEAHYKGYVAKYNEIQEKLADQNFADRSKANQNYSEYRELKVEETFNYMGV 78
Query: 58 AWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKA 117
HE ++ IE D G D E K AAA F GWA L
Sbjct: 79 VL-HELYFGMLTPGGKGEPSEALKKKIEEDIGGLDACTNELK-AAAMAF-RGWAILG--- 132
Query: 118 NRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS---PLLTIDVWEHAYFLDFENRR 174
++ F +VV +A N V++ + PL+ ID +EHAY++D++N+R
Sbjct: 133 --------LDIFSGR-----LVVNGLDAHN--VYNLTGLIPLIVIDTYEHAYYVDYKNKR 177
Query: 175 PNYISVFMDKLVSWEVVSKRLE 196
P YI F K ++W+VV++R E
Sbjct: 178 PPYIDAFF-KNINWDVVNERFE 198
>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant.
pdb|1WB7|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant
Length = 210
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 21/199 (10%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN-NAAQAW 59
+SKD ++ H+ HH+ +V N + L+ + D+ Y+ ++ N
Sbjct: 25 ISKDIIDVHYNGHHKGFVNGANSLL--ERLEKVVKGDLQTGQYDIQGIIRGLTFNINGHK 82
Query: 60 NHEFFWXXXXXXXXXXXXXXXXXX--IERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKA 117
H +W I + +GSFDRF + F A + G+GWA L Y
Sbjct: 83 LHALYWENMAPSGKGGGKPGGALADLINKQYGSFDRFKQVFTETANSLPGTGWAVLYYDT 142
Query: 118 NRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNY 177
N L ++ N + + +L +D +EHAY+L ++N+R +Y
Sbjct: 143 ESGN---------------LQIMTFENHFQNHIAEIPIILILDEFEHAYYLQYKNKRADY 187
Query: 178 ISVFMDKLVSWEVVSKRLE 196
++ + + +V+W+ K+L+
Sbjct: 188 VNAWWN-VVNWDAAEKKLQ 205
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|B Chain B, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|C Chain C, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|D Chain D, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
Length = 207
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 82/210 (39%), Gaps = 38/210 (18%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVSYNKGN---MLPPFNN-- 54
+S E H+ HH+ YV N T +D L D++ + N M+ N
Sbjct: 18 ISGQINELHYTXHHQTYVNGFN-----TAVDQFQELSDLLAXEPSPANARXMIAIQQNIX 72
Query: 55 --AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAATQFGSG 109
NH FW I+ FGS D + + A GSG
Sbjct: 73 FHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLAGVQGSG 132
Query: 110 WAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTIDVWEHAY 166
WA++ N+ N L VV++ N PLV PL+ ID WEHAY
Sbjct: 133 WAFIVX-----NLSNG---------GXLDVVQTYNQDTVTGPLV----PLVAIDAWEHAY 174
Query: 167 FLDFENRRPNYISVFMDKLVSWEVVSKRLE 196
+L ++N +Y + +V+W S+R +
Sbjct: 175 YLQYQNXXADYFXAIWN-VVNWXEASRRFD 203
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|B Chain B, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|C Chain C, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|D Chain D, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
Length = 207
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 82/210 (39%), Gaps = 38/210 (18%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVSYNKGN---MLPPFNN-- 54
+S E H+ HH+ +V N T +D L D++ + N M+ N
Sbjct: 18 ISGQINELHYTXHHQTFVNGFN-----TAVDQFQELSDLLAXEPSPANARXMIAIQQNIX 72
Query: 55 --AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAATQFGSG 109
NH FW I+ FGS D + + A GSG
Sbjct: 73 FHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLAGVQGSG 132
Query: 110 WAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTIDVWEHAY 166
WA++ N+ N L VV++ N PLV PL+ ID WEHAY
Sbjct: 133 WAFIVX-----NLSNG---------GXLDVVQTYNQDTVTGPLV----PLVAIDAWEHAY 174
Query: 167 FLDFENRRPNYISVFMDKLVSWEVVSKRLE 196
+L ++N +Y + +V+W S+R +
Sbjct: 175 YLQYQNXXADYFXAIWN-VVNWXEASRRFD 203
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 75/201 (37%), Gaps = 28/201 (13%)
Query: 1 MSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPFNNAAQA 58
+SK+ + H KHH AYV N I E + L+ V+ + N F+
Sbjct: 24 ISKEINDLHINKHHVAYVNGYNAAIDALEKAVGKRDLKSVVEIQQN-----IKFHGGGHT 78
Query: 59 WNHEFFWXXXXXXXXXX-----XXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 113
NH FW I +GS ++ S A GSGWA++
Sbjct: 79 -NHSLFWKNLAPVSKGGGKHPDTSSALGKQIVAQYGSVSNLIDITNSKLAGIQGSGWAFI 137
Query: 114 AYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENR 173
V N N L VV + N P++ ID WEHAY+L ++N
Sbjct: 138 --------VKNKQN------GGALDVVTTANQDTISAPHLVPIIAIDAWEHAYYLQYQNV 183
Query: 174 RPNYISVFMDKLVSWEVVSKR 194
+ +Y + +++W R
Sbjct: 184 KLDYFKAIWN-VINWAEAESR 203
>pdb|3RKO|M Chain M, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
pdb|3RKO|C Chain C, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
Length = 509
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 8 YHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIV 41
Y HRAY QI EL GMSL ++ ++
Sbjct: 435 YSLAMLHRAYFGKAKSQIASQELPGMSLRELFMI 468
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,402,220
Number of Sequences: 62578
Number of extensions: 229623
Number of successful extensions: 683
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 103
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)