Query 026433
Match_columns 238
No_of_seqs 166 out of 744
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 13:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 4.6E-17 1.6E-21 118.9 0.2 43 150-196 5-47 (63)
2 2vut_I AREA, nitrogen regulato 99.6 4.3E-16 1.5E-20 106.1 2.2 37 153-190 2-38 (43)
3 1gnf_A Transcription factor GA 99.6 9.9E-16 3.4E-20 105.7 3.9 39 151-190 3-41 (46)
4 2kae_A GATA-type transcription 99.5 2.6E-15 8.9E-20 111.9 3.8 44 149-195 5-48 (71)
5 4gat_A Nitrogen regulatory pro 99.5 3.6E-15 1.2E-19 109.7 2.3 39 150-189 7-45 (66)
6 4hc9_A Trans-acting T-cell-spe 99.5 5.3E-15 1.8E-19 118.2 0.4 49 141-190 48-96 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 5.2E-12 1.8E-16 100.9 3.3 36 151-187 4-39 (115)
8 2zjr_Z 50S ribosomal protein L 80.1 1.1 3.9E-05 31.8 2.7 48 107-182 4-51 (60)
9 1dl6_A Transcription factor II 77.6 2.2 7.5E-05 29.7 3.5 40 153-195 12-53 (58)
10 1pft_A TFIIB, PFTFIIBN; N-term 76.9 1.2 3.9E-05 29.6 1.8 40 153-195 6-47 (50)
11 3cw2_K Translation initiation 66.6 2.8 9.5E-05 34.2 2.2 30 153-183 104-133 (139)
12 3k7a_M Transcription initiatio 66.2 3.7 0.00013 36.8 3.2 43 152-195 21-65 (345)
13 2d74_B Translation initiation 65.4 3 0.0001 34.4 2.2 31 153-184 105-135 (148)
14 1nee_A EIF-2-beta, probable tr 58.2 2.9 0.0001 34.1 0.9 30 153-183 103-132 (138)
15 2yrk_A Zinc finger homeobox pr 58.2 3.4 0.00011 29.4 1.1 20 167-186 6-25 (55)
16 1k81_A EIF-2-beta, probable tr 56.1 1.1 3.9E-05 28.7 -1.5 30 154-184 2-31 (36)
17 3v2d_5 50S ribosomal protein L 54.3 3.3 0.00011 29.4 0.5 47 107-181 4-50 (60)
18 2b0o_E UPLC1; arfgap, structur 51.2 6.3 0.00022 33.6 1.9 34 150-185 40-73 (301)
19 2iqj_A Stromal membrane-associ 49.2 5.4 0.00018 32.2 1.0 34 151-186 26-59 (134)
20 2owa_A Arfgap-like finger doma 48.7 5.5 0.00019 32.4 1.0 34 151-186 35-68 (138)
21 2apo_B Ribosome biogenesis pro 47.6 15 0.0005 26.3 3.0 49 152-219 6-54 (60)
22 2crr_A Stromal membrane-associ 47.5 6.8 0.00023 31.8 1.4 34 151-186 28-61 (141)
23 1qyp_A RNA polymerase II; tran 44.6 4.2 0.00014 27.6 -0.2 35 152-186 15-55 (57)
24 3dwd_A ADP-ribosylation factor 44.3 9.7 0.00033 31.5 1.9 35 150-186 36-70 (147)
25 2crw_A ARF GAP 3, ADP-ribosyla 44.0 9.9 0.00034 31.3 1.9 34 151-186 28-61 (149)
26 2p57_A GTPase-activating prote 40.7 7 0.00024 32.2 0.5 34 151-186 36-69 (144)
27 2g2k_A EIF-5, eukaryotic trans 37.9 5.1 0.00017 33.8 -0.8 33 153-185 97-130 (170)
28 3cng_A Nudix hydrolase; struct 36.4 11 0.00037 29.9 1.0 30 152-181 3-32 (189)
29 2olm_A Nucleoporin-like protei 35.3 12 0.0004 30.3 1.0 34 151-186 24-57 (140)
30 2e9h_A EIF-5, eukaryotic trans 34.2 8.1 0.00028 32.2 -0.1 33 153-185 104-137 (157)
31 3sub_A ADP-ribosylation factor 31.0 15 0.00052 30.8 1.0 34 151-186 21-54 (163)
32 2yrc_A Protein transport prote 27.7 23 0.0008 24.7 1.4 36 149-184 6-43 (59)
33 3jue_A Arfgap with coiled-coil 27.1 26 0.00088 31.3 1.9 30 150-181 43-72 (368)
34 3po3_S Transcription elongatio 24.4 26 0.00088 29.2 1.3 36 150-185 135-176 (178)
35 4bbr_M Transcription initiatio 23.1 19 0.00066 32.5 0.3 32 154-186 23-54 (345)
36 1tfi_A Transcriptional elongat 23.0 20 0.00068 24.2 0.3 35 151-185 8-48 (50)
37 3lju_X ARF-GAP with dual PH do 22.2 28 0.00094 31.7 1.1 33 151-185 33-65 (386)
38 3o47_A ADP-ribosylation factor 22.0 26 0.00088 30.6 0.8 35 150-186 35-69 (329)
39 1pqv_S STP-alpha, transcriptio 20.8 24 0.00081 31.6 0.4 34 152-185 268-307 (309)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.61 E-value=4.6e-17 Score=118.92 Aligned_cols=43 Identities=35% Similarity=0.821 Sum_probs=37.4
Q ss_pred CCCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCCCCCCCC
Q 026433 150 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPA 196 (238)
Q Consensus 150 ~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rllp~yrpa 196 (238)
.....|+||++++||+||+||+|+ +|||||||+|++++. +||.
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP~ 47 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRPL 47 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCCG
T ss_pred CCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCCc
Confidence 446789999999999999999996 999999999999765 4553
No 2
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.57 E-value=4.3e-16 Score=106.11 Aligned_cols=37 Identities=43% Similarity=0.944 Sum_probs=33.9
Q ss_pred ceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCC
Q 026433 153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV 190 (238)
Q Consensus 153 r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rll 190 (238)
+.|++|++++||+||+||+|+ +|||||||+|++++..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence 579999999999999999996 9999999999986654
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.57 E-value=9.9e-16 Score=105.71 Aligned_cols=39 Identities=44% Similarity=0.863 Sum_probs=35.1
Q ss_pred CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCC
Q 026433 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV 190 (238)
Q Consensus 151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rll 190 (238)
..+.|+||++++||+||+||+|+ +|||||||+|++++..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence 45789999999999999999995 9999999999986653
No 4
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.54 E-value=2.6e-15 Score=111.92 Aligned_cols=44 Identities=25% Similarity=0.431 Sum_probs=34.3
Q ss_pred CCCCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCCCCCCC
Q 026433 149 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRP 195 (238)
Q Consensus 149 ~~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rllp~yrp 195 (238)
......|+||++++||+||+|+.+..+|||||||+|++++. +||
T Consensus 5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~---~RP 48 (71)
T 2kae_A 5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK---TRP 48 (71)
T ss_dssp ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHS---CCC
T ss_pred CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCC---CCC
Confidence 34568899999999999999654445999999999998553 466
No 5
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.51 E-value=3.6e-15 Score=109.66 Aligned_cols=39 Identities=38% Similarity=0.791 Sum_probs=35.2
Q ss_pred CCCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCC
Q 026433 150 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL 189 (238)
Q Consensus 150 ~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rl 189 (238)
.....|+||++++||+||+||+|. +|||||||+|++++.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence 456899999999999999999995 999999999998554
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.46 E-value=5.3e-15 Score=118.22 Aligned_cols=49 Identities=27% Similarity=0.656 Sum_probs=40.6
Q ss_pred CCCCCCcCCCCCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCC
Q 026433 141 AAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV 190 (238)
Q Consensus 141 k~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rll 190 (238)
++++..........|+||+++.||+||+||+| ++|||||||+|++++..
T Consensus 48 pKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 48 PKRRLSAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CCCCCCCCCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC
T ss_pred ccccccccccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC
Confidence 33444444566789999999999999999999 99999999999986553
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.20 E-value=5.2e-12 Score=100.90 Aligned_cols=36 Identities=50% Similarity=1.097 Sum_probs=32.2
Q ss_pred CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcC
Q 026433 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSG 187 (238)
Q Consensus 151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~ 187 (238)
..+.|+||++++||+||+||+| .+|||||||+|+.+
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~ 39 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMN 39 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhc
Confidence 4678999999999999999999 89999999999863
No 8
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=80.12 E-value=1.1 Score=31.76 Aligned_cols=48 Identities=25% Similarity=0.421 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCccccccccccccccccCcCCCcCCCCCCCcCCCCCceeccCCCCCCCCcccCCCCCcccchhhhh
Q 026433 107 LRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGV 182 (238)
Q Consensus 107 l~vP~raRSKR~R~~~~~~~~~~~~~~~~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL 182 (238)
..||-+..||.+++.++.- |.+ .......|.+||...- ++.+|-.||.
T Consensus 4 MAVPKrK~Sksrr~~RRsh-----~kl--------------~~p~l~~c~~cG~~~~---------pH~vc~~CG~ 51 (60)
T 2zjr_Z 4 HPVPKKKTSKSKRDMRRSH-----HAL--------------TAPNLTECPQCHGKKL---------SHHICPNCGY 51 (60)
T ss_dssp CSCCSSCCCTTHHHHHTTT-----CCC--------------CCCCCEECTTTCCEEC---------TTBCCTTTCB
T ss_pred cccCCCCCChHHhhhhccc-----ccc--------------cCCCceECCCCCCEeC---------CceEcCCCCc
Confidence 4688888888877777631 111 1234567999997632 3789999993
No 9
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=77.61 E-value=2.2 Score=29.71 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=28.8
Q ss_pred ceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCC--CCCCCC
Q 026433 153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL--VPEYRP 195 (238)
Q Consensus 153 r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rl--lp~yrp 195 (238)
..|..|+... .-.....| .+.|..||+-+....+ -||||.
T Consensus 12 ~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~ 53 (58)
T 1dl6_A 12 VTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRT 53 (58)
T ss_dssp CSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCC
T ss_pred ccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCcccc
Confidence 4699998754 44444556 8999999999976433 477874
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=76.92 E-value=1.2 Score=29.58 Aligned_cols=40 Identities=23% Similarity=0.575 Sum_probs=27.3
Q ss_pred ceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCC--CCCCC
Q 026433 153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV--PEYRP 195 (238)
Q Consensus 153 r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rll--p~yrp 195 (238)
..|.+|+.. ++-.....| ...|..||+-|....+- |+||.
T Consensus 6 ~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 6 KVCPACESA--ELIYDPERG-EIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp CSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCCCCCCCSSSSC
T ss_pred EeCcCCCCc--ceEEcCCCC-eEECcccCCcccccccccCCcccc
Confidence 469999873 333333345 89999999999765543 67774
No 11
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=66.60 E-value=2.8 Score=34.21 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=21.5
Q ss_pred ceeccCCCCCCCCcccCCCCCcccchhhhhh
Q 026433 153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVR 183 (238)
Q Consensus 153 r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ 183 (238)
-.|..|+..+|-+=+++..= -.-|+|||-.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred eECCCCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence 57999999999999875333 5789999965
No 12
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=66.19 E-value=3.7 Score=36.84 Aligned_cols=43 Identities=19% Similarity=0.384 Sum_probs=27.3
Q ss_pred CceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCC--CCCCC
Q 026433 152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV--PEYRP 195 (238)
Q Consensus 152 ~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rll--p~yrp 195 (238)
...|.+|+...+-.-.+-..| .+.|..||+-..-..+- ||||.
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl~e~~id~~~EwR~ 65 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLSDKLVDTRSEWRT 65 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCCCCCCCCTTCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEcccccccCCccccc
Confidence 356999988643233344456 78899999877654433 66653
No 13
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=65.38 E-value=3 Score=34.44 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=24.8
Q ss_pred ceeccCCCCCCCCcccCCCCCcccchhhhhhh
Q 026433 153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRF 184 (238)
Q Consensus 153 r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~y 184 (238)
-.|..|+..+|-+=+++..- -.-|+|||-..
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCCCc
Confidence 46999999999999865332 57899999764
No 14
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=58.23 E-value=2.9 Score=34.06 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=24.1
Q ss_pred ceeccCCCCCCCCcccCCCCCcccchhhhhh
Q 026433 153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVR 183 (238)
Q Consensus 153 r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ 183 (238)
-.|..|+..+|-+=+++.. --.-|+|||-.
T Consensus 103 VlC~~C~sPdT~l~k~~r~-~~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRI-SLLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTT-TEEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCe-EEEEccCCCCC
Confidence 4699999999999986533 25789999965
No 15
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=58.18 E-value=3.4 Score=29.41 Aligned_cols=20 Identities=35% Similarity=0.875 Sum_probs=17.2
Q ss_pred ccCCCCCcccchhhhhhhhc
Q 026433 167 RAGPMGPKTLCNACGVRFKS 186 (238)
Q Consensus 167 RrGP~G~~~LCNACGL~ykk 186 (238)
..+|+||++-|.-||+.|..
T Consensus 6 ~~~~~~P~~eC~lC~vkYs~ 25 (55)
T 2yrk_A 6 SGGTDGTKPECTLCGVKYSA 25 (55)
T ss_dssp CCCCCCCCSCCTTTTCCCCS
T ss_pred CCCCCCCCccccccCccccc
Confidence 35889999999999999954
No 16
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=56.14 E-value=1.1 Score=28.69 Aligned_cols=30 Identities=30% Similarity=0.607 Sum_probs=22.4
Q ss_pred eeccCCCCCCCCcccCCCCCcccchhhhhhh
Q 026433 154 KCQHCGAEKTPQWRAGPMGPKTLCNACGVRF 184 (238)
Q Consensus 154 ~C~nCgtt~TP~WRrGP~G~~~LCNACGL~y 184 (238)
.|..|+..+|-+=+++..- -.-|+|||-..
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCCcc
Confidence 4899999999988864222 35699999764
No 17
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=54.28 E-value=3.3 Score=29.37 Aligned_cols=47 Identities=34% Similarity=0.518 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCccccccccccccccccCcCCCcCCCCCCCcCCCCCceeccCCCCCCCCcccCCCCCcccchhhh
Q 026433 107 LRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACG 181 (238)
Q Consensus 107 l~vP~raRSKR~R~~~~~~~~~~~~~~~~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACG 181 (238)
..||-+..||.+++.++.- |.+. ....-.|.+||...- ++.+|-.||
T Consensus 4 MAVPKrK~Sksr~~~RRsh-----~kl~--------------~p~l~~c~~cGe~~~---------~H~vc~~CG 50 (60)
T 3v2d_5 4 HPVPKKKTSKARRDARRSH-----HALT--------------PPTLVPCPECKAMKP---------PHTVCPECG 50 (60)
T ss_dssp CCCCSSCCCHHHHHHHGGG-----CCCC--------------CCCCEECTTTCCEEC---------TTSCCTTTC
T ss_pred cccCcCcCChhhcchhhcc-----cccc--------------CCceeECCCCCCeec---------ceEEcCCCC
Confidence 4688888887777666631 1111 123567999998543 378999999
No 18
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=51.19 E-value=6.3 Score=33.62 Aligned_cols=34 Identities=26% Similarity=0.653 Sum_probs=27.9
Q ss_pred CCCceeccCCCCCCCCcccCCCCCcccchhhhhhhh
Q 026433 150 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 185 (238)
Q Consensus 150 ~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~yk 185 (238)
.....|+.|+... |.|-.-.-| ..+|-.|--.-+
T Consensus 40 ~~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr 73 (301)
T 2b0o_E 40 PGNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHR 73 (301)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHH
T ss_pred CCCCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHH
Confidence 3468999999975 999999999 899999954443
No 19
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=49.18 E-value=5.4 Score=32.15 Aligned_cols=34 Identities=21% Similarity=0.630 Sum_probs=28.7
Q ss_pred CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhc
Q 026433 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 186 (238)
Q Consensus 151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk 186 (238)
..+.|++|+... |.|-.=..| -.+|-.|.-..+.
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~ 59 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRN 59 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhc
Confidence 467899999875 999998899 8999999776655
No 20
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=48.75 E-value=5.5 Score=32.38 Aligned_cols=34 Identities=21% Similarity=0.628 Sum_probs=29.1
Q ss_pred CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhc
Q 026433 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 186 (238)
Q Consensus 151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk 186 (238)
..+.|++|+... |.|-.=..| -.+|-.|.-..+.
T Consensus 35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~ 68 (138)
T 2owa_A 35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRK 68 (138)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHT
T ss_pred CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhC
Confidence 457899999875 999998899 8999999877765
No 21
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=47.57 E-value=15 Score=26.26 Aligned_cols=49 Identities=27% Similarity=0.525 Sum_probs=33.5
Q ss_pred CceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCCCCCCCCCCCCCCcccccchhHHHHHHHHh
Q 026433 152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQ 219 (238)
Q Consensus 152 ~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rllp~yrpa~sPtf~~~~hsn~hrkv~~~R~q 219 (238)
.+.|..|++-.- +..|-.||..... +--|.|+++-.-..||-.++.|-.
T Consensus 6 mr~C~~CgvYTL----------k~~CP~CG~~T~~---------~hParfSp~Dky~~yR~~~kk~~~ 54 (60)
T 2apo_B 6 MKKCPKCGLYTL----------KEICPKCGEKTVI---------PKPPKFSLEDRWGKYRRMLKRALK 54 (60)
T ss_dssp CEECTTTCCEES----------SSBCSSSCSBCBC---------CCCCCCCTTCTTHHHHHHHHHHHH
T ss_pred ceeCCCCCCEec----------cccCcCCCCcCCC---------CCCCCCCCCcchHHHHHHHHHHhc
Confidence 467888876544 5678888876542 444677777777788877766644
No 22
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.50 E-value=6.8 Score=31.79 Aligned_cols=34 Identities=24% Similarity=0.656 Sum_probs=28.1
Q ss_pred CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhc
Q 026433 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 186 (238)
Q Consensus 151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk 186 (238)
..+.|++|+.. -|.|-.=..| -.+|-.|.-..+.
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 61 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRN 61 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHH
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhc
Confidence 45789999987 5999998889 8999999766654
No 23
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=44.61 E-value=4.2 Score=27.60 Aligned_cols=35 Identities=31% Similarity=0.613 Sum_probs=25.2
Q ss_pred CceeccCCCCC----CCCcccCCCCC--cccchhhhhhhhc
Q 026433 152 GRKCQHCGAEK----TPQWRAGPMGP--KTLCNACGVRFKS 186 (238)
Q Consensus 152 ~r~C~nCgtt~----TP~WRrGP~G~--~~LCNACGL~ykk 186 (238)
...|.+||-.. +-|||...++. -+.|..||-+|+-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 35699999854 34788776662 2689999988753
No 24
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=44.27 E-value=9.7 Score=31.50 Aligned_cols=35 Identities=31% Similarity=0.648 Sum_probs=29.3
Q ss_pred CCCceeccCCCCCCCCcccCCCCCcccchhhhhhhhc
Q 026433 150 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 186 (238)
Q Consensus 150 ~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk 186 (238)
..++.|++|+... |.|-.=..| -.+|-.|.-..+.
T Consensus 36 p~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~ 70 (147)
T 3dwd_A 36 DENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRG 70 (147)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred cCCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhc
Confidence 3467899999975 999998889 8999999876665
No 25
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.96 E-value=9.9 Score=31.32 Aligned_cols=34 Identities=32% Similarity=0.769 Sum_probs=28.6
Q ss_pred CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhc
Q 026433 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 186 (238)
Q Consensus 151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk 186 (238)
.++.|++|+.. -|.|-.=..| -.+|-.|.-..+.
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 61 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRS 61 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHH
T ss_pred CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhcc
Confidence 46789999976 5999998889 8999999776665
No 26
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=40.73 E-value=7 Score=32.15 Aligned_cols=34 Identities=32% Similarity=0.768 Sum_probs=28.7
Q ss_pred CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhc
Q 026433 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 186 (238)
Q Consensus 151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk 186 (238)
.++.|++|+... |.|-.=..| -.+|-.|.-..+.
T Consensus 36 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~ 69 (144)
T 2p57_A 36 TNKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRS 69 (144)
T ss_dssp GGGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHH
T ss_pred CCCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcC
Confidence 457899999865 999988889 8999999877765
No 27
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=37.92 E-value=5.1 Score=33.84 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=24.2
Q ss_pred ceeccCCCCCCCCcccCCCC-Ccccchhhhhhhh
Q 026433 153 RKCQHCGAEKTPQWRAGPMG-PKTLCNACGVRFK 185 (238)
Q Consensus 153 r~C~nCgtt~TP~WRrGP~G-~~~LCNACGL~yk 185 (238)
-.|..|+..+|-+-+....+ --.-|+|||-...
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 36999999999998832122 2467999997754
No 28
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=36.43 E-value=11 Score=29.89 Aligned_cols=30 Identities=27% Similarity=0.640 Sum_probs=25.9
Q ss_pred CceeccCCCCCCCCcccCCCCCcccchhhh
Q 026433 152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACG 181 (238)
Q Consensus 152 ~r~C~nCgtt~TP~WRrGP~G~~~LCNACG 181 (238)
-+.|..||...+.....|..+....|-.||
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 468999999998877778888788999999
No 29
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=35.29 E-value=12 Score=30.33 Aligned_cols=34 Identities=24% Similarity=0.653 Sum_probs=28.4
Q ss_pred CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhc
Q 026433 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 186 (238)
Q Consensus 151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk 186 (238)
.+..|++|+.. -|.|-.=..| -.+|-.|.-..+.
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred CCCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 46789999986 6999998889 8999999776654
No 30
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.16 E-value=8.1 Score=32.20 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=24.0
Q ss_pred ceeccCCCCCCCCccc-CCCCCcccchhhhhhhh
Q 026433 153 RKCQHCGAEKTPQWRA-GPMGPKTLCNACGVRFK 185 (238)
Q Consensus 153 r~C~nCgtt~TP~WRr-GP~G~~~LCNACGL~yk 185 (238)
-.|..|+..+|-+=+. ...---.-|+|||-...
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCCc
Confidence 4699999999999873 21222467999997653
No 31
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=31.01 E-value=15 Score=30.84 Aligned_cols=34 Identities=32% Similarity=0.704 Sum_probs=28.0
Q ss_pred CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhc
Q 026433 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 186 (238)
Q Consensus 151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk 186 (238)
..+.|++|+.. -|.|-.=..| -.+|-.|.-..+.
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~ 54 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRS 54 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcC
Confidence 35789999996 5999998889 8999999655554
No 32
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=27.70 E-value=23 Score=24.73 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=31.2
Q ss_pred CCCCceecc--CCCCCCCCcccCCCCCcccchhhhhhh
Q 026433 149 VIIGRKCQH--CGAEKTPQWRAGPMGPKTLCNACGVRF 184 (238)
Q Consensus 149 ~~~~r~C~n--Cgtt~TP~WRrGP~G~~~LCNACGL~y 184 (238)
.....+|.. |++---|-++-...|....||-|+.+-
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N 43 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRN 43 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEE
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcC
Confidence 455678998 999999999998888899999999764
No 33
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=27.05 E-value=26 Score=31.32 Aligned_cols=30 Identities=30% Similarity=0.737 Sum_probs=25.8
Q ss_pred CCCceeccCCCCCCCCcccCCCCCcccchhhh
Q 026433 150 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACG 181 (238)
Q Consensus 150 ~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACG 181 (238)
...+.|++|+.. -|.|-.=..| -.+|-.|.
T Consensus 43 ~~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~ 72 (368)
T 3jue_A 43 DGNAQCCDCREP-APEWASINLG-VTLCIQCS 72 (368)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTT-EEECHHHH
T ss_pred CCcCcCCCCCCC-CCCeEEecCC-eEEcHhHH
Confidence 346789999986 5999998889 89999995
No 34
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=24.42 E-value=26 Score=29.16 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=24.1
Q ss_pred CCCceeccCCCCCC---CCc-ccCCCCC--cccchhhhhhhh
Q 026433 150 IIGRKCQHCGAEKT---PQW-RAGPMGP--KTLCNACGVRFK 185 (238)
Q Consensus 150 ~~~r~C~nCgtt~T---P~W-RrGP~G~--~~LCNACGL~yk 185 (238)
+....|..|+-... ..+ |.+.++. -+.|..||-+|+
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 34568999997663 223 5554442 257999999986
No 35
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=23.09 E-value=19 Score=32.47 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=18.3
Q ss_pred eeccCCCCCCCCcccCCCCCcccchhhhhhhhc
Q 026433 154 KCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 186 (238)
Q Consensus 154 ~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk 186 (238)
.|..|+...+-.--+-..| .+.|..||+-..-
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlVl~e 54 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEG-DVVCALCGLVLSD 54 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGT-EEEETTTCBEEES
T ss_pred cCCCCCCCCCceeEECCCC-cEEeCCCCCCccC
Confidence 5777776433333333345 6777777776654
No 36
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=23.02 E-value=20 Score=24.23 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=24.1
Q ss_pred CCceeccCCCCCCCCc----ccCCCCCc--ccchhhhhhhh
Q 026433 151 IGRKCQHCGAEKTPQW----RAGPMGPK--TLCNACGVRFK 185 (238)
Q Consensus 151 ~~r~C~nCgtt~TP~W----RrGP~G~~--~LCNACGL~yk 185 (238)
....|..|+-.+.--| |..+++.- +.|..||-+|+
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 3457999998764333 66666632 58999998875
No 37
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=22.18 E-value=28 Score=31.70 Aligned_cols=33 Identities=27% Similarity=0.765 Sum_probs=27.6
Q ss_pred CCceeccCCCCCCCCcccCCCCCcccchhhhhhhh
Q 026433 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 185 (238)
Q Consensus 151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~yk 185 (238)
.+..|++|+.. -|.|-.=..| -.+|-.|.-..+
T Consensus 33 ~N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr 65 (386)
T 3lju_X 33 GNARCADCGAP-DPDWASYTLG-VFICLSCSGIHR 65 (386)
T ss_dssp GGSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHH
T ss_pred CCCcCccCCCC-CCCeEEeccc-EEEhhhhchHhh
Confidence 45789999997 7999998889 899999986544
No 38
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=21.97 E-value=26 Score=30.55 Aligned_cols=35 Identities=31% Similarity=0.645 Sum_probs=28.5
Q ss_pred CCCceeccCCCCCCCCcccCCCCCcccchhhhhhhhc
Q 026433 150 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 186 (238)
Q Consensus 150 ~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk 186 (238)
...+.|++|+.. -|.|-.=.-| -.+|-.|.--.+.
T Consensus 35 ~~n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~ 69 (329)
T 3o47_A 35 DENNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRG 69 (329)
T ss_dssp TTTTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHH
T ss_pred CCCCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhcc
Confidence 346789999985 5899988888 8999999766654
No 39
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=20.77 E-value=24 Score=31.61 Aligned_cols=34 Identities=29% Similarity=0.636 Sum_probs=24.7
Q ss_pred CceeccCCCCCCCCc----ccCCCCCc--ccchhhhhhhh
Q 026433 152 GRKCQHCGAEKTPQW----RAGPMGPK--TLCNACGVRFK 185 (238)
Q Consensus 152 ~r~C~nCgtt~TP~W----RrGP~G~~--~LCNACGL~yk 185 (238)
...|..|+-...-.| |..++|-- +.|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 457999998776444 55555522 68999999986
Done!