BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026434
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 33/159 (20%)
Query: 60 LQELELEYCNLEEMKID---STDEVKKLFQSGFRSLNTVH----VFYCQKAKDLTWLVFV 112
L++L+LEYCNL + S VK F+ S N +H CQ KD
Sbjct: 140 LEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLHEPGVRILCQGLKD-----SA 194
Query: 113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTIS----WGINLKGVYP 168
L+ L++E C I +D+ +++ S+ A L+ L +S + + P
Sbjct: 195 CQLESLKLENCG-----ITAANCKDLCDVVASK----ASLQELDLSSNKLGNAGIAALCP 245
Query: 169 N-PLPFPKLKK-------IKVRGCRHLKKLPLNSSSAKE 199
LP KL+ I GC+ L ++ S KE
Sbjct: 246 GLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKE 284
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 134 KLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLP 172
K+R+I++ IG+ F + ++ G+ GVYPNP+P
Sbjct: 185 KMREIADSIGAY--LFVDMAHVA---GLVAAGVYPNPVP 218
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 134 KLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLP 172
K+R+I++ IG+ F + ++ G+ GVYPNP+P
Sbjct: 185 KMREIADSIGAY--LFVDMAHVA---GLVAAGVYPNPVP 218
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 134 KLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLP 172
K+R+I++ IG+ F + ++ G+ GVYPNP+P
Sbjct: 185 KMREIADSIGAY--LFVDMAHVA---GLVAAGVYPNPVP 218
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 102 KAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI 161
KA D + + L+ LR E +V++ G L+DI EI + +N + +Y+ ++ G
Sbjct: 328 KADDKIYFGGLPTLRNLRPEV--NVKKYSGC--LKDI-EISRTPYNILSSPDYVGVTKGC 382
Query: 162 NLKGVYPNPLPFP 174
+L+ VY P P
Sbjct: 383 SLENVYTVSFPKP 395
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 196 SAKERRVVIEGSKKWWEELQWEDQATQNAFSSGV 229
S K + V++ G++K E + WED++T F G
Sbjct: 127 SGKAKNVLVIGAEKLSEAVDWEDRSTCVLFGDGA 160
>pdb|2I3Q|A Chain A, Q44v Mutant Of Homing Endonuclease I-crei
pdb|2I3Q|B Chain B, Q44v Mutant Of Homing Endonuclease I-crei
Length = 153
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 109 LVFVQNLKKLRIEFCDDVEEIIGVDKLRD---ISEIIGSE----HNFFAQLE 153
L FV K R F D + + IGV +RD +S+ I SE HNF QL+
Sbjct: 41 LTFVVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQ 92
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLV 110
+A+ E L E E K+++ + K+ +G+ +LN ++ F C + + +W +
Sbjct: 267 VAFEERLTNFTEEEAIEECKKLNTKSXLPKIIVTGYNALNLINYFTCGEDEVRSWTI 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,352,218
Number of Sequences: 62578
Number of extensions: 295907
Number of successful extensions: 810
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 13
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)