Query 026434
Match_columns 238
No_of_seqs 177 out of 1469
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.5 4.2E-15 9.2E-20 141.9 3.1 217 1-225 661-883 (889)
2 PLN03210 Resistant to P. syrin 99.3 9E-12 1.9E-16 123.5 10.1 105 88-193 800-912 (1153)
3 PLN03210 Resistant to P. syrin 99.3 1.3E-11 2.8E-16 122.5 10.8 89 31-129 631-720 (1153)
4 PLN00113 leucine-rich repeat r 98.5 2.8E-07 6E-12 90.4 6.5 46 147-192 305-350 (968)
5 PLN00113 leucine-rich repeat r 98.4 5.4E-07 1.2E-11 88.4 6.4 187 3-191 159-373 (968)
6 KOG2120 SCF ubiquitin ligase, 98.3 1.6E-08 3.5E-13 84.3 -4.5 134 34-186 234-375 (419)
7 PRK15386 type III secretion pr 97.8 7.8E-05 1.7E-09 65.9 8.3 68 34-121 52-120 (426)
8 PF14580 LRR_9: Leucine-rich r 97.7 2.3E-05 4.9E-10 61.6 1.9 103 35-162 20-125 (175)
9 PF14580 LRR_9: Leucine-rich r 97.5 5.9E-05 1.3E-09 59.3 2.9 110 52-186 13-125 (175)
10 KOG3665 ZYG-1-like serine/thre 97.5 2.8E-05 6.1E-10 73.4 -0.1 129 34-183 122-259 (699)
11 PF13855 LRR_8: Leucine rich r 97.4 0.00026 5.6E-09 45.4 4.3 38 35-73 2-40 (61)
12 PRK15386 type III secretion pr 97.4 0.00026 5.7E-09 62.6 5.7 63 54-129 48-110 (426)
13 PF13855 LRR_8: Leucine rich r 97.4 0.00036 7.9E-09 44.7 5.0 30 91-121 2-33 (61)
14 KOG4341 F-box protein containi 97.3 1.8E-05 4E-10 68.9 -2.4 58 146-203 368-430 (483)
15 cd00116 LRR_RI Leucine-rich re 97.2 7.6E-05 1.6E-09 63.6 -0.1 12 173-184 220-231 (319)
16 KOG2120 SCF ubiquitin ligase, 97.2 2.5E-05 5.4E-10 65.6 -3.4 129 8-160 234-373 (419)
17 KOG4341 F-box protein containi 97.0 8.8E-06 1.9E-10 70.8 -7.5 164 34-204 138-325 (483)
18 KOG0444 Cytoskeletal regulator 97.0 7.1E-05 1.5E-09 68.7 -2.4 48 144-192 333-380 (1255)
19 PRK15370 E3 ubiquitin-protein 96.9 0.001 2.2E-08 63.6 4.8 37 34-73 220-256 (754)
20 cd00116 LRR_RI Leucine-rich re 96.9 0.00023 5.1E-09 60.6 0.4 166 4-185 77-261 (319)
21 KOG4658 Apoptotic ATPase [Sign 96.9 0.00056 1.2E-08 66.5 2.8 153 24-195 707-868 (889)
22 KOG0617 Ras suppressor protein 96.9 0.00013 2.9E-09 56.8 -1.5 147 34-193 33-191 (264)
23 PRK15387 E3 ubiquitin-protein 96.8 0.0023 5.1E-08 61.2 6.2 36 90-129 282-317 (788)
24 KOG3665 ZYG-1-like serine/thre 96.8 0.00033 7.1E-09 66.3 0.2 132 7-158 121-258 (699)
25 KOG1947 Leucine rich repeat pr 96.7 8E-05 1.7E-09 66.9 -4.7 64 56-126 241-308 (482)
26 KOG4194 Membrane glycoprotein 96.6 0.001 2.2E-08 60.9 2.1 111 55-185 290-427 (873)
27 PRK15370 E3 ubiquitin-protein 96.6 0.0089 1.9E-07 57.3 8.3 38 150-191 283-320 (754)
28 KOG3207 Beta-tubulin folding c 96.6 0.00046 9.9E-09 60.7 -0.7 61 55-123 169-232 (505)
29 KOG3207 Beta-tubulin folding c 96.4 0.00088 1.9E-08 59.0 0.0 66 87-160 243-311 (505)
30 KOG3864 Uncharacterized conser 96.4 0.00021 4.5E-09 56.8 -3.6 67 88-166 123-192 (221)
31 PF12799 LRR_4: Leucine Rich r 96.3 0.0052 1.1E-07 36.7 3.1 32 91-123 2-34 (44)
32 PRK15387 E3 ubiquitin-protein 96.2 0.018 3.8E-07 55.4 7.9 50 59-123 223-272 (788)
33 KOG4194 Membrane glycoprotein 96.2 0.0038 8.3E-08 57.2 3.2 187 2-207 96-325 (873)
34 KOG0617 Ras suppressor protein 96.2 0.00087 1.9E-08 52.3 -1.0 109 51-183 26-136 (264)
35 KOG0444 Cytoskeletal regulator 96.0 0.00085 1.9E-08 61.9 -1.8 44 148-193 243-286 (1255)
36 KOG1259 Nischarin, modulator o 95.9 0.001 2.2E-08 56.2 -1.7 127 8-161 284-410 (490)
37 PF12799 LRR_4: Leucine Rich r 95.9 0.01 2.3E-07 35.4 3.1 38 59-106 2-39 (44)
38 KOG1947 Leucine rich repeat pr 95.8 0.00042 9.1E-09 62.3 -4.9 83 34-123 243-331 (482)
39 KOG2123 Uncharacterized conser 95.4 0.00048 1E-08 57.5 -5.5 33 35-69 20-52 (388)
40 KOG0618 Serine/threonine phosp 95.2 0.0037 7.9E-08 59.9 -0.9 22 52-73 377-398 (1081)
41 KOG0618 Serine/threonine phosp 94.9 0.004 8.6E-08 59.6 -1.5 107 33-163 382-489 (1081)
42 PF13504 LRR_7: Leucine rich r 94.9 0.02 4.2E-07 26.8 1.5 17 174-191 1-17 (17)
43 KOG3864 Uncharacterized conser 94.8 0.0048 1E-07 49.2 -1.1 65 34-106 125-192 (221)
44 PLN03150 hypothetical protein; 94.0 0.11 2.5E-06 48.9 5.8 36 87-123 439-476 (623)
45 PLN03150 hypothetical protein; 94.0 0.1 2.3E-06 49.2 5.5 61 53-123 437-500 (623)
46 KOG2982 Uncharacterized conser 93.0 0.066 1.4E-06 45.5 2.1 14 111-124 197-210 (418)
47 KOG1259 Nischarin, modulator o 92.5 0.038 8.3E-07 47.0 0.1 101 87-191 304-415 (490)
48 KOG0472 Leucine-rich repeat pr 92.3 0.033 7.1E-07 49.1 -0.6 109 54-186 431-540 (565)
49 KOG0472 Leucine-rich repeat pr 91.5 0.042 9.1E-07 48.4 -0.7 108 3-124 430-539 (565)
50 KOG1644 U2-associated snRNP A' 90.9 0.33 7.2E-06 39.0 3.9 33 89-121 87-121 (233)
51 KOG2123 Uncharacterized conser 90.1 0.0081 1.8E-07 50.4 -6.0 53 57-120 18-70 (388)
52 COG4886 Leucine-rich repeat (L 90.0 0.099 2.2E-06 46.1 0.2 12 172-183 275-286 (394)
53 KOG2739 Leucine-rich acidic nu 89.6 0.15 3.2E-06 42.3 0.9 35 89-124 90-127 (260)
54 smart00367 LRR_CC Leucine-rich 89.6 0.23 5E-06 25.7 1.4 17 173-189 1-17 (26)
55 KOG0531 Protein phosphatase 1, 89.4 0.16 3.5E-06 45.4 1.1 78 34-124 95-173 (414)
56 PF00560 LRR_1: Leucine Rich R 88.1 0.2 4.4E-06 24.9 0.5 18 175-193 1-18 (22)
57 COG4886 Leucine-rich repeat (L 86.8 0.51 1.1E-05 41.6 2.6 60 53-122 158-218 (394)
58 KOG2739 Leucine-rich acidic nu 86.6 0.31 6.6E-06 40.4 1.0 131 35-188 19-157 (260)
59 KOG0531 Protein phosphatase 1, 83.3 0.67 1.5E-05 41.4 1.7 60 54-123 91-150 (414)
60 PF13306 LRR_5: Leucine rich r 82.4 9.3 0.0002 27.4 7.4 10 90-99 35-44 (129)
61 KOG1859 Leucine-rich repeat pr 79.2 0.19 4.1E-06 47.7 -3.2 50 21-70 71-121 (1096)
62 KOG1859 Leucine-rich repeat pr 76.8 0.2 4.4E-06 47.5 -3.8 17 53-69 204-220 (1096)
63 KOG4237 Extracellular matrix p 73.6 1.6 3.4E-05 38.8 1.0 21 54-74 270-290 (498)
64 KOG1644 U2-associated snRNP A' 72.7 2.9 6.4E-05 33.7 2.2 80 34-123 64-150 (233)
65 KOG2982 Uncharacterized conser 72.4 1.9 4E-05 37.0 1.1 57 54-122 93-155 (418)
66 KOG0532 Leucine-rich repeat (L 61.1 1.7 3.7E-05 40.3 -1.3 12 205-216 311-322 (722)
67 KOG0532 Leucine-rich repeat (L 59.9 1.2 2.5E-05 41.3 -2.5 12 148-159 232-243 (722)
68 smart00369 LRR_TYP Leucine-ric 57.1 8.4 0.00018 19.5 1.5 19 174-193 2-20 (26)
69 smart00370 LRR Leucine-rich re 57.1 8.4 0.00018 19.5 1.5 19 174-193 2-20 (26)
70 PF13516 LRR_6: Leucine Rich r 51.0 12 0.00025 18.5 1.4 12 174-185 2-13 (24)
71 KOG1909 Ran GTPase-activating 42.7 7.7 0.00017 33.9 -0.2 118 54-186 181-310 (382)
72 KOG4237 Extracellular matrix p 37.3 9.3 0.0002 34.1 -0.5 80 33-122 273-355 (498)
73 KOG4579 Leucine-rich repeat (L 32.8 3.4 7.3E-05 31.5 -3.4 81 35-124 28-111 (177)
74 KOG1909 Ran GTPase-activating 29.3 26 0.00057 30.7 1.0 117 4-125 181-310 (382)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.52 E-value=4.2e-15 Score=141.88 Aligned_cols=217 Identities=31% Similarity=0.451 Sum_probs=172.2
Q ss_pred CccccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccC
Q 026434 1 MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTD 79 (238)
Q Consensus 1 l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~ 79 (238)
++||++|++|+.+++++.+...++.+....++....+.+.+.+|.... ..+++..+.+|+.|.|.+|. .+ +.+++..
T Consensus 661 l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~-~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~ 738 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRT-LISSLGSLGNLEELSILDCGISE-IVIEWEE 738 (889)
T ss_pred HHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccce-eecccccccCcceEEEEcCCCch-hhccccc
Confidence 468999999999999988877778888888888888888886644322 46678889999999999999 55 3333321
Q ss_pred ccCccccc-CCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccccccccccccccccccccccee-ec
Q 026434 80 EVKKLFQS-GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYL-TI 157 (238)
Q Consensus 80 ~~~~~~~~-~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L-~L 157 (238)
. .... +|+++..+.+.+|..++++.|....|+|++|.+..|..++++++......... .....|+++..+ .+
T Consensus 739 ~---~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~---~~i~~f~~~~~l~~~ 812 (889)
T KOG4658|consen 739 S---LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK---ELILPFNKLEGLRML 812 (889)
T ss_pred c---cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcc---cEEecccccccceee
Confidence 1 0111 48899999999999999999999999999999999999999987654432110 235678888888 68
Q ss_pred cccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCC---cceEEEchhhhhhhcccCchhhhhhc
Q 026434 158 SWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKE---RRVVIEGSKKWWEELQWEDQATQNAF 225 (238)
Q Consensus 158 ~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~---~L~~~~~~~~w~~~~~~~~~~~~~~~ 225 (238)
.+.+++++++.....++.|+.+.+..||+++.+|........ ...+...+.+|.+.++|+|++++..|
T Consensus 813 ~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 999999999988888999999999999999999988765442 23444556678899999999999888
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.30 E-value=9e-12 Score=123.54 Aligned_cols=105 Identities=18% Similarity=0.273 Sum_probs=68.9
Q ss_pred CCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccc--------cccccccccccccccccceeeccc
Q 026434 88 GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKL--------RDISEIIGSEHNFFAQLEYLTISW 159 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~--------~~~~~~~~~~~~~~p~L~~L~L~~ 159 (238)
.+++|+.|+|.+|.+++.+|....+++|++|++++|.++..++..... ....+.+ ..+..+++|+.|++.+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP-~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccCh-HHHhcCCCCCEEECCC
Confidence 455566666666666666554445666666666666665544221110 0001111 3456788999999999
Q ss_pred cccccccCCCCCCCCCccEEeEcCccCCCCCCCC
Q 026434 160 GINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 160 ~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~ 193 (238)
|++|++++.....+++|+.+++.+|++|+.++..
T Consensus 879 C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 879 CNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred CCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 9999998877777889999999999999877653
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.30 E-value=1.3e-11 Score=122.48 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=61.5
Q ss_pred hhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCccc
Q 026434 31 KLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWL 109 (238)
Q Consensus 31 ~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~ 109 (238)
...++|+.|++.++..+.. ++.++.+++|+.|++.+|. +..++ .+...+++|+.|++++|..++.+|..
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~-ip~ls~l~~Le~L~L~~c~~L~~lp---------~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKE-IPDLSMATNLETLKLSDCSSLVELP---------SSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred ccCCCCCEEECCCCCCcCc-CCccccCCcccEEEecCCCCccccc---------hhhhccCCCCEEeCCCCCCcCccCCc
Confidence 3346777888777766553 5566777888888888887 76653 22345777888888888777777655
Q ss_pred ccCCCccEEEEeccccccee
Q 026434 110 VFVQNLKKLRIEFCDDVEEI 129 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l 129 (238)
..+++|++|.+.+|..++.+
T Consensus 701 i~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 701 INLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred CCCCCCCEEeCCCCCCcccc
Confidence 56777777777777665543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.46 E-value=2.8e-07 Score=90.43 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=25.4
Q ss_pred ccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCC
Q 026434 147 NFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPL 192 (238)
Q Consensus 147 ~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~ 192 (238)
..+++|+.|++.++.--..++.....+++|+.|++++|.--..+|.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh
Confidence 3455566666554432222222334567888888887765545553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.38 E-value=5.4e-07 Score=88.41 Aligned_cols=187 Identities=13% Similarity=0.048 Sum_probs=88.5
Q ss_pred cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccC--
Q 026434 3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTD-- 79 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~-- 79 (238)
++.++.+|+.|++....... .+.....-.++|+.|++.+|.-.......+.++++|+.|++++|. ...++.....
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred HHhcCCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 45677888888875332110 111111112466677776654211112234555666666665554 2222100000
Q ss_pred -----------c--cCcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEecccccceeccc---ccc-------
Q 026434 80 -----------E--VKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEIIGV---DKL------- 135 (238)
Q Consensus 80 -----------~--~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l~~~---~~~------- 135 (238)
. ..+.....+++|+.|+++++.-...++ .+..+++|++|++.+|.-...++.. ...
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 0 001123345556666665553111222 3445566666666655321111100 000
Q ss_pred -cccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434 136 -RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 136 -~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp 191 (238)
....+.....+..+++|+.|.+.++.--..++.....+++|+.|+++++.--..+|
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 00000011345568899999998775433444444567899999998876544455
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.6e-08 Score=84.27 Aligned_cols=134 Identities=18% Similarity=0.138 Sum_probs=93.9
Q ss_pred cceeEEEEeecCCCCC-ccc-chhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCc---Cc
Q 026434 34 SITQSVGVYQCRSPPF-NVF-HLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD---LT 107 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~-~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~---l~ 107 (238)
.+|+.|+|..|.++.. ... -+.+++.|..|++++|. ....+--.. ..-=++|+.|+++||.+--. +.
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V-------~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV-------AHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH-------hhhchhhhhhhhhhhHhhhhhhHHH
Confidence 5789999999999876 222 35788999999999998 554421111 11235788999999965322 22
Q ss_pred c-cccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccccc-CCCCCCCCCccEEeEcCcc
Q 026434 108 W-LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGV-YPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 108 ~-~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i-~~~~~~~~~L~~L~i~~C~ 185 (238)
. ...+|+|.+|++++|..+..-.. ..+..|+.|++|.++.|..+--= -......|+|..|++.||-
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHhCCceeeeccccccccCchHH------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 1 24789999999999987664211 45667999999999999765310 1134567999999999885
Q ss_pred C
Q 026434 186 H 186 (238)
Q Consensus 186 ~ 186 (238)
.
T Consensus 375 s 375 (419)
T KOG2120|consen 375 S 375 (419)
T ss_pred C
Confidence 4
No 7
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=7.8e-05 Score=65.86 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=45.7
Q ss_pred cceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV 112 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l 112 (238)
.+++.|+|.+| .+++ ++.+. .+|+.|.+++|. ++.++. ...++|+.|.|.+|.+++.+|
T Consensus 52 ~~l~~L~Is~c-~L~s-LP~LP--~sLtsL~Lsnc~nLtsLP~-----------~LP~nLe~L~Ls~Cs~L~sLP----- 111 (426)
T PRK15386 52 RASGRLYIKDC-DIES-LPVLP--NELTEITIENCNNLTTLPG-----------SIPEGLEKLTVCHCPEISGLP----- 111 (426)
T ss_pred cCCCEEEeCCC-CCcc-cCCCC--CCCcEEEccCCCCcccCCc-----------hhhhhhhheEccCcccccccc-----
Confidence 57888888888 5554 33333 468888888888 765521 113578888888887776553
Q ss_pred CCccEEEEe
Q 026434 113 QNLKKLRIE 121 (238)
Q Consensus 113 ~~L~~L~i~ 121 (238)
++|++|.+.
T Consensus 112 ~sLe~L~L~ 120 (426)
T PRK15386 112 ESVRSLEIK 120 (426)
T ss_pred cccceEEeC
Confidence 457777764
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.65 E-value=2.3e-05 Score=61.63 Aligned_cols=103 Identities=13% Similarity=0.183 Sum_probs=34.6
Q ss_pred ceeEEEEeecCCCCCcccchh-hcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-cc-cc
Q 026434 35 ITQSVGVYQCRSPPFNVFHLA-YMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WL-VF 111 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~~~~~l~-~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~-~~ 111 (238)
.++.|++.++.- . .+..++ .+.+|+.|++++|.++.+ .....+++|+.|++++- +++++. .+ ..
T Consensus 20 ~~~~L~L~~n~I-~-~Ie~L~~~l~~L~~L~Ls~N~I~~l----------~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~ 86 (175)
T PF14580_consen 20 KLRELNLRGNQI-S-TIENLGATLDKLEVLDLSNNQITKL----------EGLPGLPRLKTLDLSNN-RISSISEGLDKN 86 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S------------TT----TT--EEE--SS----S-CHHHHHH
T ss_pred cccccccccccc-c-cccchhhhhcCCCEEECCCCCCccc----------cCccChhhhhhcccCCC-CCCccccchHHh
Confidence 567788877642 2 234454 467888999998885544 12245788888888764 677774 23 35
Q ss_pred CCCccEEEEecccccceecccccccccccccccccccccccceeecccccc
Q 026434 112 VQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGIN 162 (238)
Q Consensus 112 l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~ 162 (238)
+|+|++|++++- ++.++-. + ..+..+|+|+.|.+.+.|-
T Consensus 87 lp~L~~L~L~~N-~I~~l~~------l-----~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 87 LPNLQELYLSNN-KISDLNE------L-----EPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TT--EEE-TTS----SCCC------C-----GGGGG-TT--EEE-TT-GG
T ss_pred CCcCCEEECcCC-cCCChHH------h-----HHHHcCCCcceeeccCCcc
Confidence 889999988753 4443311 0 4556788999999988773
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.55 E-value=5.9e-05 Score=59.27 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=35.1
Q ss_pred cchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecc
Q 026434 52 FHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIG 131 (238)
Q Consensus 52 ~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~ 131 (238)
+...+...+++|++.++.++.|. .. ...+.+|+.|+++++ +++.+..+..+++|++|++.+- .+..+.
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie--~L-------~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N-~I~~i~- 80 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIE--NL-------GATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNN-RISSIS- 80 (175)
T ss_dssp -------------------------S---------TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-C-
T ss_pred ccccccccccccccccccccccc--ch-------hhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCC-CCCccc-
Confidence 34445567899999999855552 11 124789999999998 7888888888999999999763 444441
Q ss_pred ccccccccccccccc-ccccccceeeccccccccccCC--CCCCCCCccEEeEcCccC
Q 026434 132 VDKLRDISEIIGSEH-NFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 132 ~~~~~~~~~~~~~~~-~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C~~ 186 (238)
..+ ..+|+|++|++.+- ++.++.. ....+|+|+.|++.+.|-
T Consensus 81 ------------~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 81 ------------EGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ------------HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ------------cchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 112 35899999999632 2333222 234689999999988764
No 10
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=2.8e-05 Score=73.44 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=76.9
Q ss_pred cceeEEEEeecCCCCCccc-ch-hhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccc
Q 026434 34 SITQSVGVYQCRSPPFNVF-HL-AYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLV 110 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~-~l-~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~ 110 (238)
.+|++|+|.+-......++ .+ ..+|+|+.|.|.+-. ...=... --.+||+|..|+|+++ +++++..++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~--------lc~sFpNL~sLDIS~T-nI~nl~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ--------LCASFPNLRSLDISGT-NISNLSGIS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH--------HhhccCccceeecCCC-CccCcHHHh
Confidence 5778888877333211222 23 246888888888755 2210000 0136899999999998 688888888
Q ss_pred cCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccccc------CCCCCCCCCccEEeEcC
Q 026434 111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGV------YPNPLPFPKLKKIKVRG 183 (238)
Q Consensus 111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i------~~~~~~~~~L~~L~i~~ 183 (238)
.+++|++|.+++..- +.. ... ..+..+.+|+.|+++.=.+...- -.....+|.|+.|+.++
T Consensus 193 ~LknLq~L~mrnLe~-e~~------~~l-----~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEF-ESY------QDL-----IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred ccccHHHHhccCCCC-Cch------hhH-----HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 899999988876532 111 000 34456788888888754332221 01234477777777663
No 11
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.43 E-value=0.00026 Score=45.41 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=16.5
Q ss_pred ceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceE
Q 026434 35 ITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEM 73 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i 73 (238)
+|+.|.+.++ .+.. +...+..+++|+.|+++++.++.+
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i 40 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSI 40 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEE
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCcc
Confidence 3445555544 2222 122344455555555554444434
No 12
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.43 E-value=0.00026 Score=62.56 Aligned_cols=63 Identities=16% Similarity=0.326 Sum_probs=46.2
Q ss_pred hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEeccccccee
Q 026434 54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEI 129 (238)
Q Consensus 54 l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l 129 (238)
+..+.+++.|+|++|.++.++ ...++|+.|.+.+|.+++.++. ...++|++|.+.+|.++..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP------------~LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP------------VLPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC------------CCCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccc
Confidence 445688899999988866553 1234689999999998888764 22468999999998776544
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.43 E-value=0.00036 Score=44.70 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=13.9
Q ss_pred CccEEEEecCCCCCcCc--ccccCCCccEEEEe
Q 026434 91 SLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIE 121 (238)
Q Consensus 91 ~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~ 121 (238)
+|+.|++++| +++.++ .+..+++|++|+++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~ 33 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLS 33 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEET
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEcc
Confidence 4445555544 444443 23344555555554
No 14
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.35 E-value=1.8e-05 Score=68.93 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=34.9
Q ss_pred cccccccceeecccccccccc-----CCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceE
Q 026434 146 HNFFAQLEYLTISWGINLKGV-----YPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVV 203 (238)
Q Consensus 146 ~~~~p~L~~L~L~~~~~L~~i-----~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~ 203 (238)
....|.|+.|.++.|...+.- .........|+.+.+.+||.+++--....+....|+.
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 345678888888877666544 2233456677888888888776644443333334433
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.21 E-value=7.6e-05 Score=63.61 Aligned_cols=12 Identities=8% Similarity=0.216 Sum_probs=6.8
Q ss_pred CCCccEEeEcCc
Q 026434 173 FPKLKKIKVRGC 184 (238)
Q Consensus 173 ~~~L~~L~i~~C 184 (238)
+++|+.|++++|
T Consensus 220 ~~~L~~L~ls~n 231 (319)
T cd00116 220 LKSLEVLNLGDN 231 (319)
T ss_pred cCCCCEEecCCC
Confidence 455555555555
No 16
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=2.5e-05 Score=65.60 Aligned_cols=129 Identities=21% Similarity=0.186 Sum_probs=86.3
Q ss_pred CCCcceeEEeee---hHHHHhhhcCchhhcceeEEEEeecCCCCC----cccchhhcccCCeEEEeecC--CceEEeccc
Q 026434 8 KHLKVLSWSFGS---SLAVQKFLKYPKLVSITQSVGVYQCRSPPF----NVFHLAYMENLQELELEYCN--LEEMKIDST 78 (238)
Q Consensus 8 ~~L~~L~i~~~~---~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~----~~~~l~~l~~L~~L~i~~c~--l~~i~~~~~ 78 (238)
++|..|+++.++ ..+++.++... +.|..|+|.-|...+. .+..++ ++|..|+++||. +..--+..
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~sc---s~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~t- 307 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSC---SRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLST- 307 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhh---hhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHH-
Confidence 456667776544 34455555554 4788999999976544 122333 799999999986 33111100
Q ss_pred CccCcccccCCCCccEEEEecCCCCCc--CcccccCCCccEEEEecccccceecccccccccccccccccccccccceee
Q 026434 79 DEVKKLFQSGFRSLNTVHVFYCQKAKD--LTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLT 156 (238)
Q Consensus 79 ~~~~~~~~~~l~~L~~L~i~~C~~L~~--l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~ 156 (238)
-....++|.+|++++|..+++ +..+..++.|++|.++.|+.+- +.. + ......|.|.+|+
T Consensus 308 ------L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~---p~~----~-----~~l~s~psl~yLd 369 (419)
T KOG2120|consen 308 ------LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII---PET----L-----LELNSKPSLVYLD 369 (419)
T ss_pred ------HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC---hHH----e-----eeeccCcceEEEE
Confidence 123578999999999998887 1235689999999999998652 110 0 3455678999999
Q ss_pred cccc
Q 026434 157 ISWG 160 (238)
Q Consensus 157 L~~~ 160 (238)
+.+|
T Consensus 370 v~g~ 373 (419)
T KOG2120|consen 370 VFGC 373 (419)
T ss_pred eccc
Confidence 8766
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.03 E-value=8.8e-06 Score=70.85 Aligned_cols=164 Identities=14% Similarity=0.189 Sum_probs=103.0
Q ss_pred cceeEEEEeecCCCCC-cccc-hhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--
Q 026434 34 SITQSVGVYQCRSPPF-NVFH-LAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW-- 108 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~-l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-- 108 (238)
.-++.|.+++|.+... .+.. ..+++++++|.+.+|. +++...... ...+++|++|++..|..+++...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl-------a~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSL-------ARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHH-------HHhcchhhhhhhcccchhHHHHHHH
Confidence 5689999999998765 3333 3678999999999999 775533221 24688999999999999988642
Q ss_pred -cccCCCccEEEEeccccccee----cccc-cc---cccc---cccc----cccccccccceeeccccccccccCC--CC
Q 026434 109 -LVFVQNLKKLRIEFCDDVEEI----IGVD-KL---RDIS---EIIG----SEHNFFAQLEYLTISWGINLKGVYP--NP 170 (238)
Q Consensus 109 -~~~l~~L~~L~i~~C~~l~~l----~~~~-~~---~~~~---~~~~----~~~~~~p~L~~L~L~~~~~L~~i~~--~~ 170 (238)
...+++|++|+++.|+.+..- +..+ +. ...+ +.+. ......+.+..+++.+|..+++... -.
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 347899999999999988651 1110 00 0000 0000 0011123344555556655554332 12
Q ss_pred CCCCCccEEeEcCccCCCCCCCCCCCCC-CcceEE
Q 026434 171 LPFPKLKKIKVRGCRHLKKLPLNSSSAK-ERRVVI 204 (238)
Q Consensus 171 ~~~~~L~~L~i~~C~~L~~lp~~~~~~~-~~L~~~ 204 (238)
..+..|+.+..++|..+...+....... .+|++.
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l 325 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVL 325 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEE
Confidence 3467899999999999887775544322 455544
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.00 E-value=7.1e-05 Score=68.72 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=33.0
Q ss_pred cccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCC
Q 026434 144 SEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPL 192 (238)
Q Consensus 144 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~ 192 (238)
+.+-.+++|+.|.|. +..|..++....-++.|+.|+++.-|+|-.-|.
T Consensus 333 EglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 455566777777775 445556665555678888888888888875553
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.95 E-value=0.001 Score=63.57 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=19.9
Q ss_pred cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceE
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEM 73 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i 73 (238)
.+|+.|++.++. +.. ++. .-..+|+.|++++|.+..+
T Consensus 220 ~nL~~L~Ls~N~-Lts-LP~-~l~~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 220 GNIKTLYANSNQ-LTS-IPA-TLPDTIQEMELSINRITEL 256 (754)
T ss_pred cCCCEEECCCCc-ccc-CCh-hhhccccEEECcCCccCcC
Confidence 467777777653 332 221 1124677777777664433
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.94 E-value=0.00023 Score=60.58 Aligned_cols=166 Identities=16% Similarity=0.029 Sum_probs=92.0
Q ss_pred ccccCCCcceeEEeeehH--HHHhhhcCchhhcceeEEEEeecCCCCCcc----cchhhc-ccCCeEEEeecCCceEEec
Q 026434 4 LLGLKHLKVLSWSFGSSL--AVQKFLKYPKLVSITQSVGVYQCRSPPFNV----FHLAYM-ENLQELELEYCNLEEMKID 76 (238)
Q Consensus 4 L~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~----~~l~~l-~~L~~L~i~~c~l~~i~~~ 76 (238)
+..+.+|+.|+++..... ....+...... ++|+.|++.+|.-..... ..+..+ ++|+.|++++|.+..-...
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 455778999988643321 11222121111 469999999986321111 234556 8999999999983311000
Q ss_pred ccCccCcccccCCCCccEEEEecCCCCCc-----Cc-ccccCCCccEEEEecccccceeccccccccccccccccccccc
Q 026434 77 STDEVKKLFQSGFRSLNTVHVFYCQKAKD-----LT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFA 150 (238)
Q Consensus 77 ~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-----l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p 150 (238)
.. ......+++|+.|++.+| .++. ++ .+..+++|++|++++|. +.... ..... ..+..++
T Consensus 156 ~~----~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~----~~~l~----~~~~~~~ 221 (319)
T cd00116 156 AL----AKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEG----ASALA----ETLASLK 221 (319)
T ss_pred HH----HHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHH----HHHHH----HHhcccC
Confidence 00 011234568999999887 4553 11 12345789999998884 22110 00000 2334578
Q ss_pred ccceeeccccccccc-----cCCC-CCCCCCccEEeEcCcc
Q 026434 151 QLEYLTISWGINLKG-----VYPN-PLPFPKLKKIKVRGCR 185 (238)
Q Consensus 151 ~L~~L~L~~~~~L~~-----i~~~-~~~~~~L~~L~i~~C~ 185 (238)
+|++|++++++ +.+ +... ....+.|+.|++.+|.
T Consensus 222 ~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 222 SLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred CCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 89999998764 332 1110 1124789999998884
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.91 E-value=0.00056 Score=66.45 Aligned_cols=153 Identities=17% Similarity=0.265 Sum_probs=89.6
Q ss_pred HhhhcCchhhcceeEEEEeecCCCCC--cc-cc--hhh-cccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEE
Q 026434 24 QKFLKYPKLVSITQSVGVYQCRSPPF--NV-FH--LAY-MENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVH 96 (238)
Q Consensus 24 ~~l~~~~~l~~~L~~L~l~~c~~l~~--~~-~~--l~~-l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~ 96 (238)
+.........++++.|.|.+|..... .. .. ... ++++..+.+.+|. +.... .....++|+.|+
T Consensus 707 ~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~----------~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 707 RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT----------WLLFAPHLTSLS 776 (889)
T ss_pred ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc----------hhhccCcccEEE
Confidence 33344445567999999999987533 11 11 122 5677888888888 65431 123578999999
Q ss_pred EecCCCCCcCcc-cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCC
Q 026434 97 VFYCQKAKDLTW-LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPK 175 (238)
Q Consensus 97 i~~C~~L~~l~~-~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~ 175 (238)
+.+|+.+.++.+ ...+..++.+.+ .+..+...-......+.+.+. .....+++|+.+.+..||++.+ +|.
T Consensus 777 l~~~~~~e~~i~~~k~~~~l~~~i~-~f~~~~~l~~~~~l~~l~~i~-~~~l~~~~l~~~~ve~~p~l~~-------~P~ 847 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKLKALLELKELIL-PFNKLEGLRMLCSLGGLPQLY-WLPLSFLKLEELIVEECPKLGK-------LPL 847 (889)
T ss_pred EecccccccCCCHHHHhhhcccEEe-cccccccceeeecCCCCceeE-ecccCccchhheehhcCccccc-------Ccc
Confidence 999998888632 333444443222 222222220000000000000 1223456677777777777665 578
Q ss_pred ccEEeEcCc-cCCCCCCCCCC
Q 026434 176 LKKIKVRGC-RHLKKLPLNSS 195 (238)
Q Consensus 176 L~~L~i~~C-~~L~~lp~~~~ 195 (238)
+.++.+.+| +++...|...+
T Consensus 848 ~~~~~i~~~~~~~~~~~~~~~ 868 (889)
T KOG4658|consen 848 LSTLTIVGCEEKLKEYPDGEW 868 (889)
T ss_pred ccccceeccccceeecCCccc
Confidence 889999997 99999997743
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.88 E-value=0.00013 Score=56.81 Aligned_cols=147 Identities=17% Similarity=0.190 Sum_probs=92.1
Q ss_pred cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccccC
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFV 112 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l 112 (238)
.++..|.++.-. +....+.+..+.+|+.|+++++.+++++ .++..+++|++|++. ..+|..+| .++++
T Consensus 33 s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp---------~~issl~klr~lnvg-mnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 33 SNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELP---------TSISSLPKLRILNVG-MNRLNILPRGFGSF 101 (264)
T ss_pred hhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcC---------hhhhhchhhhheecc-hhhhhcCccccCCC
Confidence 467777776543 1113467888899999999988877663 455679999999874 66787777 46889
Q ss_pred CCccEEEEecccccceecccc-------c----ccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeE
Q 026434 113 QNLKKLRIEFCDDVEEIIGVD-------K----LRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKV 181 (238)
Q Consensus 113 ~~L~~L~i~~C~~l~~l~~~~-------~----~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i 181 (238)
|.|+.|++.+-.--+...+.. . +....++....++.+.+|+-|.+.+- .|-+++...+.+..|+.|.|
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhc
Confidence 999999998753222211110 0 00001111245556667777766653 34445555556777888888
Q ss_pred cCccCCCCCCCC
Q 026434 182 RGCRHLKKLPLN 193 (238)
Q Consensus 182 ~~C~~L~~lp~~ 193 (238)
.+ -+|+-+|..
T Consensus 181 qg-nrl~vlppe 191 (264)
T KOG0617|consen 181 QG-NRLTVLPPE 191 (264)
T ss_pred cc-ceeeecChh
Confidence 76 356666643
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.84 E-value=0.0023 Score=61.24 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=21.3
Q ss_pred CCccEEEEecCCCCCcCcccccCCCccEEEEeccccccee
Q 026434 90 RSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEI 129 (238)
Q Consensus 90 ~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l 129 (238)
.+|+.|++.++ +++.+|. .+++|+.|+++++ ++..+
T Consensus 282 ~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N-~L~~L 317 (788)
T PRK15387 282 SGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN-QLASL 317 (788)
T ss_pred hhcCEEECcCC-ccccccc--cccccceeECCCC-ccccC
Confidence 45666666665 4555543 3467777777765 44443
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.80 E-value=0.00033 Score=66.34 Aligned_cols=132 Identities=16% Similarity=0.101 Sum_probs=80.1
Q ss_pred cCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccc-hhhcccCCeEEEeecCCceEEecccCccCccc
Q 026434 7 LKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFH-LAYMENLQELELEYCNLEEMKIDSTDEVKKLF 85 (238)
Q Consensus 7 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~-l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~ 85 (238)
-.+|+.|+|+.....+-.........++.|++|.+.+-.-...++.. ..+++||..|+|+++.+..+ .+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----------~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----------SG 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----------HH
Confidence 35677788764332222222233455689999999886432223333 36899999999999996655 23
Q ss_pred ccCCCCccEEEEecCCCCCc---CcccccCCCccEEEEeccccccee--cccccccccccccccccccccccceeecc
Q 026434 86 QSGFRSLNTVHVFYCQKAKD---LTWLVFVQNLKKLRIEFCDDVEEI--IGVDKLRDISEIIGSEHNFFAQLEYLTIS 158 (238)
Q Consensus 86 ~~~l~~L~~L~i~~C~~L~~---l~~~~~l~~L~~L~i~~C~~l~~l--~~~~~~~~~~~~~~~~~~~~p~L~~L~L~ 158 (238)
+..+++|+.|.+.+.. +.. +-.+..+.+|+.|+|+.=.+...- +... . +-...+|+|+.|+.+
T Consensus 191 IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qY--l-------ec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQY--L-------ECGMVLPELRFLDCS 258 (699)
T ss_pred HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHH--H-------HhcccCccccEEecC
Confidence 4568888888777653 332 123457889999999875443322 1000 0 122347888888876
No 25
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.68 E-value=8e-05 Score=66.95 Aligned_cols=64 Identities=19% Similarity=0.354 Sum_probs=40.4
Q ss_pred hcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCc---ccccCCCccEEEEeccccc
Q 026434 56 YMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT---WLVFVQNLKKLRIEFCDDV 126 (238)
Q Consensus 56 ~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~---~~~~l~~L~~L~i~~C~~l 126 (238)
.+.+|+.|++++|. +.++.+.... ..+++|+.|.+.+|..+++.. ....+++|++|++++|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~-------~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALA-------SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHH-------hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 34566666666665 4433222111 136788888888888766632 2346788999999988876
No 26
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.64 E-value=0.001 Score=60.85 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=63.9
Q ss_pred hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc----------------------
Q 026434 55 AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV---------------------- 110 (238)
Q Consensus 55 ~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~---------------------- 110 (238)
-.++.|+.|+++.+.++.|.++.+. ..++|+.|++++- +++.++. +.
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~Ws--------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWS--------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred cccchhhhhccchhhhheeecchhh--------hcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 3566777777777766666655542 3566777766543 4554432 11
Q ss_pred --cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCcc
Q 026434 111 --FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCR 185 (238)
Q Consensus 111 --~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~ 185 (238)
.+.+|++|++++- .+.-.+. ++. ....++|+|+.|.+.+ .+|++|+.. ...+++||+|++.+-+
T Consensus 361 f~~lssL~~LdLr~N-~ls~~IE--Daa-------~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSN-ELSWCIE--DAA-------VAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred HHHhhhhhhhcCcCC-eEEEEEe--cch-------hhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 2344444444331 1111111 111 3455688999998875 368888764 3468899999887654
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.61 E-value=0.0089 Score=57.33 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=17.6
Q ss_pred cccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434 150 AQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 150 p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp 191 (238)
++|+.|.++++ +|+.++... .++|+.|++.++ +++.+|
T Consensus 283 ~sL~~L~Ls~N-~Lt~LP~~l--p~sL~~L~Ls~N-~Lt~LP 320 (754)
T PRK15370 283 EELRYLSVYDN-SIRTLPAHL--PSGITHLNVQSN-SLTALP 320 (754)
T ss_pred CCCcEEECCCC-ccccCcccc--hhhHHHHHhcCC-ccccCC
Confidence 35666666554 444443211 134555555553 234444
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.00046 Score=60.74 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=27.2
Q ss_pred hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCC--cCcc-cccCCCccEEEEecc
Q 026434 55 AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAK--DLTW-LVFVQNLKKLRIEFC 123 (238)
Q Consensus 55 ~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~--~l~~-~~~l~~L~~L~i~~C 123 (238)
.++++|+.|+++.+.+....... ....+++|+.|.++.|. +. ++.| +..+|+|+.|.+..-
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~-------~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSN-------TTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred HhcccchhcccccccccCCcccc-------chhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcc
Confidence 45666666666655522111000 01245566666666662 22 1212 224555555555443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.00088 Score=58.99 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=39.5
Q ss_pred cCCCCccEEEEecCCCCCcCc---ccccCCCccEEEEecccccceecccccccccccccccccccccccceeecccc
Q 026434 87 SGFRSLNTVHVFYCQKAKDLT---WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG 160 (238)
Q Consensus 87 ~~l~~L~~L~i~~C~~L~~l~---~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 160 (238)
..++.|+.|+|++-+ +.+.+ -.+.+|.|..|++..|. +.++-. .+.... .....||+|++|.+..-
T Consensus 243 ~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~-~d~~s~-----~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 243 KILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG-IASIAE-PDVESL-----DKTHTFPKLEYLNISEN 311 (505)
T ss_pred hhhhHHhhccccCCc-ccccccccccccccchhhhhccccC-cchhcC-CCccch-----hhhcccccceeeecccC
Confidence 456677888887653 44433 35678888888888773 333311 111110 33467899999988643
No 30
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.00021 Score=56.80 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=37.2
Q ss_pred CCCCccEEEEecCCCCCcCc--cc-ccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccc
Q 026434 88 GFRSLNTVHVFYCQKAKDLT--WL-VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLK 164 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~--~~-~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~ 164 (238)
.++.++.|.+.+|..+-+.. .+ +..|+|+.|+|++|+.+++- + + ..+..|++|+.|.|.+++...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-G------L-----~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-G------L-----ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-H------H-----HHHHHhhhhHHHHhcCchhhh
Confidence 45566666666665555531 11 24566777777777665543 0 0 244556666666666666554
Q ss_pred cc
Q 026434 165 GV 166 (238)
Q Consensus 165 ~i 166 (238)
..
T Consensus 191 ~~ 192 (221)
T KOG3864|consen 191 NL 192 (221)
T ss_pred ch
Confidence 43
No 31
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.30 E-value=0.0052 Score=36.69 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=20.4
Q ss_pred CccEEEEecCCCCCcCcc-cccCCCccEEEEecc
Q 026434 91 SLNTVHVFYCQKAKDLTW-LVFVQNLKKLRIEFC 123 (238)
Q Consensus 91 ~L~~L~i~~C~~L~~l~~-~~~l~~L~~L~i~~C 123 (238)
+|+.|+++++ ++++++. +..+++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 5667777666 5666665 667777777777666
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.24 E-value=0.018 Score=55.40 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=25.7
Q ss_pred cCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434 59 NLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC 123 (238)
Q Consensus 59 ~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C 123 (238)
+|+.|.+.++.++.++ ...++|+.|+++++ +++.+|. .+++|++|++.++
T Consensus 223 ~L~~L~L~~N~Lt~LP------------~lp~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~Ls~N 272 (788)
T PRK15387 223 HITTLVIPDNNLTSLP------------ALPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSN 272 (788)
T ss_pred CCCEEEccCCcCCCCC------------CCCCCCcEEEecCC-ccCcccC--cccccceeeccCC
Confidence 5666666655544331 12355666666554 5555542 2345555555554
No 33
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.22 E-value=0.0038 Score=57.18 Aligned_cols=187 Identities=12% Similarity=0.093 Sum_probs=92.5
Q ss_pred ccccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCc
Q 026434 2 KELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDE 80 (238)
Q Consensus 2 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~ 80 (238)
+++.++.+|+.+.++...-..++.+.+. .++++.|.+..-. ..+ .-..++.++.|+.|+++.+.+.++.......
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~IP~f~~~---sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~ 171 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTRIPRFGHE---SGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPA 171 (873)
T ss_pred HHHhcCCcceeeeeccchhhhccccccc---ccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCC
Confidence 4567788888888865444444444333 3577777776532 111 1123455566666666655433332111100
Q ss_pred c-------------Cc---ccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceeccccccccccccc
Q 026434 81 V-------------KK---LFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEII 142 (238)
Q Consensus 81 ~-------------~~---~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~ 142 (238)
+ +. .....|.+|..|.+++- +++.+|. +..+|.|+.|++..- .++.+ ..
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN-~iriv-e~---------- 238 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN-RIRIV-EG---------- 238 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccc-ceeee-hh----------
Confidence 0 00 01123444555555543 4555553 345777777776542 33222 00
Q ss_pred ccccccccccceeeccc-------------ccc----------ccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCC
Q 026434 143 GSEHNFFAQLEYLTISW-------------GIN----------LKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAK 198 (238)
Q Consensus 143 ~~~~~~~p~L~~L~L~~-------------~~~----------L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~ 198 (238)
....++++|+.|.+.. |.+ +.+... ....+.+|+.|+++. -.+.++-...++.+
T Consensus 239 -ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 239 -LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFT 316 (873)
T ss_pred -hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch-hhhheeecchhhhc
Confidence 2333445555444421 122 222222 234567777777764 35667777777777
Q ss_pred CcceEEEch
Q 026434 199 ERRVVIEGS 207 (238)
Q Consensus 199 ~~L~~~~~~ 207 (238)
.+|+..+=.
T Consensus 317 qkL~~LdLs 325 (873)
T KOG4194|consen 317 QKLKELDLS 325 (873)
T ss_pred ccceeEecc
Confidence 777766433
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.15 E-value=0.00087 Score=52.32 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=66.4
Q ss_pred ccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEeccccccee
Q 026434 51 VFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEI 129 (238)
Q Consensus 51 ~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l 129 (238)
++.+-++.++..|.++.+.+..+ ++.+..+.+|+.|++.+- .++.+| .++++|.|+.|++. ...+..+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~v---------ppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~l 94 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVV---------PPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNIL 94 (264)
T ss_pred cccccchhhhhhhhcccCceeec---------CCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcC
Confidence 44455667777777777764433 244556778888887764 577776 57788888888874 3333322
Q ss_pred cccccccccccccccccccccccceeeccccc-cccccCCCCCCCCCccEEeEcC
Q 026434 130 IGVDKLRDISEIIGSEHNFFAQLEYLTISWGI-NLKGVYPNPLPFPKLKKIKVRG 183 (238)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~-~L~~i~~~~~~~~~L~~L~i~~ 183 (238)
+ ...+.||.|+.|++..-. +=.+++...+.+..|+.|.+.+
T Consensus 95 p-------------rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 95 P-------------RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred c-------------cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence 1 466778888888886421 1123443344445555555544
No 35
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.04 E-value=0.00085 Score=61.88 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=22.7
Q ss_pred cccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCC
Q 026434 148 FFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 148 ~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~ 193 (238)
.+++|+.|+|++- +++.+..+...+.+|++|+++. -+|+.+|..
T Consensus 243 ~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~a 286 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDA 286 (1255)
T ss_pred hhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHH
Confidence 4456666666542 3344333344456677776654 245555543
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.92 E-value=0.001 Score=56.22 Aligned_cols=127 Identities=21% Similarity=0.140 Sum_probs=73.8
Q ss_pred CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCccccc
Q 026434 8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQS 87 (238)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~ 87 (238)
+.|+.++++..... .+-++-++.+.++.|.++.-+- . .+.++..+++|.+|+++++.+..+. +++ .
T Consensus 284 q~LtelDLS~N~I~---~iDESvKL~Pkir~L~lS~N~i-~-~v~nLa~L~~L~~LDLS~N~Ls~~~--Gwh-------~ 349 (490)
T KOG1259|consen 284 QELTELDLSGNLIT---QIDESVKLAPKLRRLILSQNRI-R-TVQNLAELPQLQLLDLSGNLLAECV--GWH-------L 349 (490)
T ss_pred hhhhhccccccchh---hhhhhhhhccceeEEeccccce-e-eehhhhhcccceEeecccchhHhhh--hhH-------h
Confidence 34555555433322 2333445566778887765422 2 2445777778888888877644332 211 2
Q ss_pred CCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434 88 GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI 161 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 161 (238)
.+-|.+.|.+.+- .+.++..+..+=+|+.|++++- +++++- ++ ..++.+|+|+.+.+.+-|
T Consensus 350 KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~ld------eV-----~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEELD------EV-----NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhcCEeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhHH------Hh-----cccccccHHHHHhhcCCC
Confidence 4667777777653 5666666666777777777653 333331 11 466778888888776654
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.91 E-value=0.01 Score=35.38 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=18.2
Q ss_pred cCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcC
Q 026434 59 NLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL 106 (238)
Q Consensus 59 ~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 106 (238)
+|++|+++++.++++. +....+++|+.|+++++ .++++
T Consensus 2 ~L~~L~l~~N~i~~l~---------~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP---------PELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHG---------GHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCcccC---------chHhCCCCCCEEEecCC-CCCCC
Confidence 4556666655543331 11344566666666655 34444
No 38
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.81 E-value=0.00042 Score=62.29 Aligned_cols=83 Identities=23% Similarity=0.259 Sum_probs=46.2
Q ss_pred cceeEEEEeecCCCCC-cccchh-hcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCc---
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLA-YMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--- 107 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~-~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--- 107 (238)
++++.|.+..|..+.. .+..+. .+++|+.|.+.+|. +.+.-+... ...+++|++|++++|..+++-.
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i-------~~~~~~L~~L~l~~c~~~~d~~l~~ 315 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI-------AERCPSLRELDLSGCHGLTDSGLEA 315 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH-------HHhcCcccEEeeecCccchHHHHHH
Confidence 5677777777765444 333333 26677777777777 543311111 1246677777777777765521
Q ss_pred ccccCCCccEEEEecc
Q 026434 108 WLVFVQNLKKLRIEFC 123 (238)
Q Consensus 108 ~~~~l~~L~~L~i~~C 123 (238)
....+++|+.|.+..+
T Consensus 316 ~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 316 LLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHhCcchhhhhhhhc
Confidence 2334565555544443
No 39
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.00048 Score=57.53 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=16.2
Q ss_pred ceeEEEEeecCCCCCcccchhhcccCCeEEEeecC
Q 026434 35 ITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN 69 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~ 69 (238)
+.++|+.++|+ +. +++-..+|+.|+.|.++-+.
T Consensus 20 ~vkKLNcwg~~-L~-DIsic~kMp~lEVLsLSvNk 52 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LD-DISICEKMPLLEVLSLSVNK 52 (388)
T ss_pred HhhhhcccCCC-cc-HHHHHHhcccceeEEeeccc
Confidence 44555555553 11 23444555566655555433
No 40
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.23 E-value=0.0037 Score=59.89 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=11.1
Q ss_pred cchhhcccCCeEEEeecCCceE
Q 026434 52 FHLAYMENLQELELEYCNLEEM 73 (238)
Q Consensus 52 ~~l~~l~~L~~L~i~~c~l~~i 73 (238)
+.+.++++||.|+++++.+..+
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hhhccccceeeeeecccccccC
Confidence 3344555555555555544333
No 41
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.94 E-value=0.004 Score=59.64 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=71.8
Q ss_pred hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCccccc
Q 026434 33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVF 111 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 111 (238)
+++|+.|++.+- .+.+ +-..+.+++.|++|+++|+.++.++. ....++.|+.|... -+.+..+|.+..
T Consensus 382 ~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~---------tva~~~~L~tL~ah-sN~l~~fPe~~~ 450 (1081)
T KOG0618|consen 382 FKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPD---------TVANLGRLHTLRAH-SNQLLSFPELAQ 450 (1081)
T ss_pred ccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhH---------HHHhhhhhHHHhhc-CCceeechhhhh
Confidence 468888888764 3333 33457889999999999999887752 22346677766433 345667777788
Q ss_pred CCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434 112 VQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL 163 (238)
Q Consensus 112 l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L 163 (238)
++.|+.+++ +|.++..+.-. ....-|+|++|++.+-..+
T Consensus 451 l~qL~~lDl-S~N~L~~~~l~------------~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 451 LPQLKVLDL-SCNNLSEVTLP------------EALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred cCcceEEec-ccchhhhhhhh------------hhCCCcccceeeccCCccc
Confidence 888999888 56777655211 1111278888888876653
No 42
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.89 E-value=0.02 Score=26.84 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=9.9
Q ss_pred CCccEEeEcCccCCCCCC
Q 026434 174 PKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 174 ~~L~~L~i~~C~~L~~lp 191 (238)
++|+.|++++|. |+.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467888888887 77766
No 43
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.0048 Score=49.20 Aligned_cols=65 Identities=17% Similarity=0.289 Sum_probs=45.5
Q ss_pred cceeEEEEeecCCCCC-cccchh-hcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcC
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLA-YMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL 106 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~-~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 106 (238)
+.|+.|.+.+|..+.. -+..++ -.++|+.|+|++|+ +++--.. ....|++|+.|+|.+.+...++
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~--------~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA--------CLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH--------HHHHhhhhHHHHhcCchhhhch
Confidence 5788899999987765 333332 34799999999999 7754222 2346889999998877665553
No 44
>PLN03150 hypothetical protein; Provisional
Probab=93.98 E-value=0.11 Score=48.94 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=18.3
Q ss_pred cCCCCccEEEEecCCCCC-cCc-ccccCCCccEEEEecc
Q 026434 87 SGFRSLNTVHVFYCQKAK-DLT-WLVFVQNLKKLRIEFC 123 (238)
Q Consensus 87 ~~l~~L~~L~i~~C~~L~-~l~-~~~~l~~L~~L~i~~C 123 (238)
..+++|+.|+++++ +++ .++ .+..+++|+.|++.++
T Consensus 439 ~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N 476 (623)
T PLN03150 439 SKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN 476 (623)
T ss_pred hCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC
Confidence 34555666665554 233 233 2445556666655554
No 45
>PLN03150 hypothetical protein; Provisional
Probab=93.97 E-value=0.1 Score=49.19 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=31.9
Q ss_pred chhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCC-cCc-ccccCCCccEEEEecc
Q 026434 53 HLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAK-DLT-WLVFVQNLKKLRIEFC 123 (238)
Q Consensus 53 ~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~-~l~-~~~~l~~L~~L~i~~C 123 (238)
.+.++++|+.|++++|. ...++ .....+++|+.|+++++ ++. .+| .++.+++|+.|++.++
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP---------~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIP---------PSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCC---------hHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECcCC
Confidence 34556666666666665 22221 12234566666666655 333 233 2455666666666655
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=0.066 Score=45.53 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=8.9
Q ss_pred cCCCccEEEEeccc
Q 026434 111 FVQNLKKLRIEFCD 124 (238)
Q Consensus 111 ~l~~L~~L~i~~C~ 124 (238)
.+||+..+.+..|+
T Consensus 197 ~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP 210 (418)
T ss_pred hcccchheeeecCc
Confidence 46677766666664
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=92.46 E-value=0.038 Score=47.00 Aligned_cols=101 Identities=17% Similarity=0.081 Sum_probs=52.0
Q ss_pred cCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccccc-cc-----c--ccc-ccccccccccceeec
Q 026434 87 SGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLR-DI-----S--EII-GSEHNFFAQLEYLTI 157 (238)
Q Consensus 87 ~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~-~~-----~--~~~-~~~~~~~p~L~~L~L 157 (238)
.-.|.++.|++++- ++..+..+..+++|+.|++++- .+.++.+..... .. . .++ -..+..+=+|..|++
T Consensus 304 KL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 304 KLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDL 381 (490)
T ss_pred hhccceeEEecccc-ceeeehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccc
Confidence 34677777777654 4555556777888888888763 233222211000 00 0 000 022333344555555
Q ss_pred ccc--ccccccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434 158 SWG--INLKGVYPNPLPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 158 ~~~--~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp 191 (238)
.+- .++... .+.+.+|.|+.+.+.+-|- ..+|
T Consensus 382 ~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl-~~~v 415 (490)
T KOG1259|consen 382 SSNQIEELDEV-NHIGNLPCLETLRLTGNPL-AGSV 415 (490)
T ss_pred cccchhhHHHh-cccccccHHHHHhhcCCCc-cccc
Confidence 421 122221 1456789999998887663 3344
No 48
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.25 E-value=0.033 Score=49.12 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=63.1
Q ss_pred hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCccc-ccCCCccEEEEecccccceeccc
Q 026434 54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWL-VFVQNLKKLRIEFCDDVEEIIGV 132 (238)
Q Consensus 54 l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~-~~l~~L~~L~i~~C~~l~~l~~~ 132 (238)
++++++|..|+++++.+.+++.++. .+..|+.|+|+.- +++.+|-. ..+..|+++..++ .++..+.
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e~~---------~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd-- 497 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEEMG---------SLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVD-- 497 (565)
T ss_pred HHhhhcceeeecccchhhhcchhhh---------hhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccC--
Confidence 4556666666666655555544432 3555666666654 45555422 1222233322221 1222221
Q ss_pred ccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccC
Q 026434 133 DKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 133 ~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~ 186 (238)
...+..+.+|+.|++.+- .+..++...+.+.+|++|.+.|-|-
T Consensus 498 ----------~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 498 ----------PSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ----------hHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCcc
Confidence 134567788888888643 4777888888899999999998764
No 49
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.47 E-value=0.042 Score=48.44 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=55.9
Q ss_pred cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhh-cccCCeEEEeecCCceEEecccCcc
Q 026434 3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAY-MENLQELELEYCNLEEMKIDSTDEV 81 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~-l~~L~~L~i~~c~l~~i~~~~~~~~ 81 (238)
++..+++|..|++...--..+..-.+. ...||.|+|+.-+ .+ .++..-. +..++.+-.++..+..+..+
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~LP~e~~~---lv~Lq~LnlS~Nr-Fr-~lP~~~y~lq~lEtllas~nqi~~vd~~----- 499 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDLPEEMGS---LVRLQTLNLSFNR-FR-MLPECLYELQTLETLLASNNQIGSVDPS----- 499 (565)
T ss_pred HHHhhhcceeeecccchhhhcchhhhh---hhhhheecccccc-cc-cchHHHhhHHHHHHHHhccccccccChH-----
Confidence 456677777777643222222221111 2346777765531 11 2333221 23344443333334433222
Q ss_pred CcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEeccc
Q 026434 82 KKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCD 124 (238)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~ 124 (238)
....+.+|..|++.+- .+..+| .++.+.+|++|++.+-+
T Consensus 500 ---~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 ---GLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ---HhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 1345777888877664 466665 46788888888887754
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.93 E-value=0.33 Score=39.01 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=14.3
Q ss_pred CCCccEEEEecC--CCCCcCcccccCCCccEEEEe
Q 026434 89 FRSLNTVHVFYC--QKAKDLTWLVFVQNLKKLRIE 121 (238)
Q Consensus 89 l~~L~~L~i~~C--~~L~~l~~~~~l~~L~~L~i~ 121 (238)
+++|+.|.+.+- .++.++.++..+|.|++|.+.
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 445555555431 123333344444555554443
No 51
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.11 E-value=0.0081 Score=50.40 Aligned_cols=53 Identities=25% Similarity=0.341 Sum_probs=26.0
Q ss_pred cccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEE
Q 026434 57 MENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRI 120 (238)
Q Consensus 57 l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i 120 (238)
+.+.++|+.++|.+.+|.+-. .++.|+-|.++ .++++.+.++..+.+|+.|++
T Consensus 18 l~~vkKLNcwg~~L~DIsic~----------kMp~lEVLsLS-vNkIssL~pl~rCtrLkElYL 70 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICE----------KMPLLEVLSLS-VNKISSLAPLQRCTRLKELYL 70 (388)
T ss_pred HHHhhhhcccCCCccHHHHHH----------hcccceeEEee-ccccccchhHHHHHHHHHHHH
Confidence 446666777777655553311 24445544443 224444444444444444444
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.00 E-value=0.099 Score=46.12 Aligned_cols=12 Identities=17% Similarity=0.631 Sum_probs=6.6
Q ss_pred CCCCccEEeEcC
Q 026434 172 PFPKLKKIKVRG 183 (238)
Q Consensus 172 ~~~~L~~L~i~~ 183 (238)
.+.+|+.|++.+
T Consensus 275 ~~~~l~~L~~s~ 286 (394)
T COG4886 275 SLTNLRELDLSG 286 (394)
T ss_pred ccCccCEEeccC
Confidence 445556665554
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.59 E-value=0.15 Score=42.28 Aligned_cols=35 Identities=31% Similarity=0.309 Sum_probs=18.0
Q ss_pred CCCccEEEEecCCCCCc---CcccccCCCccEEEEeccc
Q 026434 89 FRSLNTVHVFYCQKAKD---LTWLVFVQNLKKLRIEFCD 124 (238)
Q Consensus 89 l~~L~~L~i~~C~~L~~---l~~~~~l~~L~~L~i~~C~ 124 (238)
+|+|+++++++- +++. +.++..+++|..|.+.+|+
T Consensus 90 ~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 90 APNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCceeEEeecCC-ccccccccchhhhhcchhhhhcccCC
Confidence 366666665543 3333 2344455555566655554
No 54
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.56 E-value=0.23 Score=25.73 Aligned_cols=17 Identities=24% Similarity=0.841 Sum_probs=13.6
Q ss_pred CCCccEEeEcCccCCCC
Q 026434 173 FPKLKKIKVRGCRHLKK 189 (238)
Q Consensus 173 ~~~L~~L~i~~C~~L~~ 189 (238)
+++|+.|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47888888888888764
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.39 E-value=0.16 Score=45.37 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=50.5
Q ss_pred cceeEEEEeecCCCCCcccc-hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434 34 SITQSVGVYQCRSPPFNVFH-LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV 112 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~-l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l 112 (238)
.++..|.+.+- .+. .+.. +..+++|++|+++++.+..+. +...++.|+.|++.+. .+..+..+..+
T Consensus 95 ~~l~~l~l~~n-~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~----------~l~~l~~L~~L~l~~N-~i~~~~~~~~l 161 (414)
T KOG0531|consen 95 KSLEALDLYDN-KIE-KIENLLSSLVNLQVLDLSFNKITKLE----------GLSTLTLLKELNLSGN-LISDISGLESL 161 (414)
T ss_pred cceeeeecccc-chh-hcccchhhhhcchheecccccccccc----------chhhccchhhheeccC-cchhccCCccc
Confidence 44555554432 111 3455 677888899988888755442 2345666888888776 57777666667
Q ss_pred CCccEEEEeccc
Q 026434 113 QNLKKLRIEFCD 124 (238)
Q Consensus 113 ~~L~~L~i~~C~ 124 (238)
++|+.+++.++.
T Consensus 162 ~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 162 KSLKLLDLSYNR 173 (414)
T ss_pred hhhhcccCCcch
Confidence 888888777753
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.12 E-value=0.2 Score=24.89 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=13.8
Q ss_pred CccEEeEcCccCCCCCCCC
Q 026434 175 KLKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 175 ~L~~L~i~~C~~L~~lp~~ 193 (238)
+|+.|++++| +++.+|..
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4788888888 77777754
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=86.77 E-value=0.51 Score=41.61 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=28.5
Q ss_pred chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccc-cCCCccEEEEec
Q 026434 53 HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLV-FVQNLKKLRIEF 122 (238)
Q Consensus 53 ~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~-~l~~L~~L~i~~ 122 (238)
.+..+++|+.|.+.++++..+.... ...++|+.|++++. ++.+++... .+..|++|.+.+
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~~~---------~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPKLL---------SNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hhhccccccccccCCchhhhhhhhh---------hhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcC
Confidence 4556666666666666643332110 13445555555554 444444332 222355554443
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.57 E-value=0.31 Score=40.45 Aligned_cols=131 Identities=14% Similarity=0.037 Sum_probs=75.4
Q ss_pred ceeEEEEeecCCCCCcccch-hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCc---Cc-cc
Q 026434 35 ITQSVGVYQCRSPPFNVFHL-AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD---LT-WL 109 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~~~~~l-~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~---l~-~~ 109 (238)
.++.+.+.+|..-...+..+ -.+.+|+.|.+.++.+.++ .....+++|+.|.++.- .... +. ..
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~----------~~~P~Lp~LkkL~lsdn-~~~~~~~l~vl~ 87 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL----------TNFPKLPKLKKLELSDN-YRRVSGGLEVLA 87 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec----------ccCCCcchhhhhcccCC-cccccccceehh
Confidence 45566666665433222222 3456788888888874433 12245788999987643 1211 21 23
Q ss_pred ccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccc--ccCC-CCCCCCCccEEeEcCccC
Q 026434 110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLK--GVYP-NPLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~--~i~~-~~~~~~~L~~L~i~~C~~ 186 (238)
..+|+|++|++++- ++..+ .. + .+...+++|..|.+.+|+-.. .-.. ....+|+|..|+-.++..
T Consensus 88 e~~P~l~~l~ls~N-ki~~l-st--------l--~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 88 EKAPNLKVLNLSGN-KIKDL-ST--------L--RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhCCceeEEeecCC-ccccc-cc--------c--chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 45699999988764 33322 10 0 344566778888888776544 1100 133478888888877776
Q ss_pred CC
Q 026434 187 LK 188 (238)
Q Consensus 187 L~ 188 (238)
-.
T Consensus 156 ~E 157 (260)
T KOG2739|consen 156 EE 157 (260)
T ss_pred cc
Confidence 44
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=83.31 E-value=0.67 Score=41.40 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=44.6
Q ss_pred hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434 54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC 123 (238)
Q Consensus 54 l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C 123 (238)
+..+++|+.|.+.+..++.+.. ...++++|+.|++++- .++++..+..++.|+.|++.+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~---------~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN---------LLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred cccccceeeeeccccchhhccc---------chhhhhcchheecccc-ccccccchhhccchhhheeccC
Confidence 5667788888887777544421 0356899999999874 6888888888888999988875
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.40 E-value=9.3 Score=27.37 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.2
Q ss_pred CCccEEEEec
Q 026434 90 RSLNTVHVFY 99 (238)
Q Consensus 90 ~~L~~L~i~~ 99 (238)
.+|+.+.+.+
T Consensus 35 ~~l~~i~~~~ 44 (129)
T PF13306_consen 35 TSLKSINFPN 44 (129)
T ss_dssp TT-SEEEESS
T ss_pred cccccccccc
Confidence 3455555443
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=79.25 E-value=0.19 Score=47.69 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=28.6
Q ss_pred HHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCC
Q 026434 21 LAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNL 70 (238)
Q Consensus 21 ~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l 70 (238)
..++++.....++.+++.|.+-....-.. ...++..+..|++|.+++|++
T Consensus 71 ~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 71 RVLEQLQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred hHHHHHHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcch
Confidence 34444444444455666666655544222 223455567888888888874
No 62
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=76.82 E-value=0.2 Score=47.53 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=8.1
Q ss_pred chhhcccCCeEEEeecC
Q 026434 53 HLAYMENLQELELEYCN 69 (238)
Q Consensus 53 ~l~~l~~L~~L~i~~c~ 69 (238)
.+..+++|++|+|+.+.
T Consensus 204 ~Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNC 220 (1096)
T ss_pred HHHhcccccccccccch
Confidence 34444555555555443
No 63
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=73.60 E-value=1.6 Score=38.77 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=16.7
Q ss_pred hhhcccCCeEEEeecCCceEE
Q 026434 54 LAYMENLQELELEYCNLEEMK 74 (238)
Q Consensus 54 l~~l~~L~~L~i~~c~l~~i~ 74 (238)
+..+++|+.|+++++.++.|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~ 290 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIE 290 (498)
T ss_pred HhhcccceEeccCCCccchhh
Confidence 678899999999988865553
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=72.68 E-value=2.9 Score=33.74 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=49.9
Q ss_pred cceeEEEEeecCCCCCcccch-hhcccCCeEEEeecCCceE-EecccCccCcccccCCCCccEEEEecCCCCCcC-----
Q 026434 34 SITQSVGVYQCRSPPFNVFHL-AYMENLQELELEYCNLEEM-KIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL----- 106 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l-~~l~~L~~L~i~~c~l~~i-~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l----- 106 (238)
..|..|.+.+-. +..--+.+ ..+++|+.|.+.++.+..+ .++ ....+|+|+.|.+.+-+ .++.
T Consensus 64 ~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~--------pLa~~p~L~~Ltll~Np-v~~k~~YR~ 133 (233)
T KOG1644|consen 64 PRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLD--------PLASCPKLEYLTLLGNP-VEHKKNYRL 133 (233)
T ss_pred cccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcc--------hhccCCccceeeecCCc-hhcccCcee
Confidence 567777776543 22211233 3467899999999874333 122 23568899999887754 2221
Q ss_pred cccccCCCccEEEEecc
Q 026434 107 TWLVFVQNLKKLRIEFC 123 (238)
Q Consensus 107 ~~~~~l~~L~~L~i~~C 123 (238)
.-+..+|+|++|++..-
T Consensus 134 yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 134 YVLYKLPSLRTLDFQKV 150 (233)
T ss_pred EEEEecCcceEeehhhh
Confidence 23567899999988654
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.37 E-value=1.9 Score=37.02 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=31.9
Q ss_pred hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc------cccCCCccEEEEec
Q 026434 54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW------LVFVQNLKKLRIEF 122 (238)
Q Consensus 54 l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~------~~~l~~L~~L~i~~ 122 (238)
+.+||+|+.|+|+.+++... ++.. +....+|+.|.+.|- .++| +..+|.++.|++++
T Consensus 93 le~lP~l~~LNls~N~L~s~-I~~l-------p~p~~nl~~lVLNgT----~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSD-IKSL-------PLPLKNLRVLVLNGT----GLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred HhcCccceEeeccCCcCCCc-cccC-------cccccceEEEEEcCC----CCChhhhhhhhhcchhhhhhhhcc
Confidence 35788888888886664321 1111 123557777776553 2333 33556666666554
No 66
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=61.06 E-value=1.7 Score=40.31 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=6.1
Q ss_pred Echhhhhhhccc
Q 026434 205 EGSKKWWEELQW 216 (238)
Q Consensus 205 ~~~~~w~~~~~~ 216 (238)
+...+-|.+.+=
T Consensus 311 D~gdKRwS~~es 322 (722)
T KOG0532|consen 311 DSGDKRWSGNES 322 (722)
T ss_pred cCcccccccCCC
Confidence 344455665553
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=59.85 E-value=1.2 Score=41.33 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=5.5
Q ss_pred cccccceeeccc
Q 026434 148 FFAQLEYLTISW 159 (238)
Q Consensus 148 ~~p~L~~L~L~~ 159 (238)
.+..|++|.|++
T Consensus 232 ~m~~Lq~l~Len 243 (722)
T KOG0532|consen 232 KMRHLQVLQLEN 243 (722)
T ss_pred hhhhheeeeecc
Confidence 344444444443
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=57.05 E-value=8.4 Score=19.48 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=12.4
Q ss_pred CCccEEeEcCccCCCCCCCC
Q 026434 174 PKLKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 174 ~~L~~L~i~~C~~L~~lp~~ 193 (238)
++|+.|++.++ +++.+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 56677777665 66777644
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=57.05 E-value=8.4 Score=19.48 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=12.4
Q ss_pred CCccEEeEcCccCCCCCCCC
Q 026434 174 PKLKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 174 ~~L~~L~i~~C~~L~~lp~~ 193 (238)
++|+.|++.++ +++.+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 56677777665 66777644
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=50.95 E-value=12 Score=18.54 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=7.0
Q ss_pred CCccEEeEcCcc
Q 026434 174 PKLKKIKVRGCR 185 (238)
Q Consensus 174 ~~L~~L~i~~C~ 185 (238)
++|+.|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 567777777765
No 71
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=42.65 E-value=7.7 Score=33.85 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=62.0
Q ss_pred hhhcccCCeEEEeecC--CceEEecccCccCcccccCCCCccEEEEecCCCCCcC------cccccCCCccEEEEecccc
Q 026434 54 LAYMENLQELELEYCN--LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL------TWLVFVQNLKKLRIEFCDD 125 (238)
Q Consensus 54 l~~l~~L~~L~i~~c~--l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l------~~~~~l~~L~~L~i~~C~~ 125 (238)
++..+.|+.+.+..+. -+.+..- ......+++|+.|++++-. ++.- ..+..+|+|+.|++.+|-
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al------~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl- 252 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTAL------AEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL- 252 (382)
T ss_pred HHhccccceEEEecccccCchhHHH------HHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccc-
Confidence 3455777777776554 1111000 0122457788888776531 2221 124567888999998882
Q ss_pred cceecccccccccccccccccccccccceeecccccc-cccc---CCCCCCCCCccEEeEcCccC
Q 026434 126 VEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGIN-LKGV---YPNPLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 126 l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~-L~~i---~~~~~~~~~L~~L~i~~C~~ 186 (238)
+ .......+.. .-...+|+|+.|.+.++.- .... -......|.|+.|.+.+|.-
T Consensus 253 l----~~~Ga~a~~~---al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 L----ENEGAIAFVD---ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred c----ccccHHHHHH---HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 2111111100 1123478888888876532 1111 11122378888888888754
No 72
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=37.32 E-value=9.3 Score=34.09 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=47.1
Q ss_pred hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCccc--
Q 026434 33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWL-- 109 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~-- 109 (238)
+++|++|++++-. ++. .-..+.....+++|.+.++.++.+...+ ...+.+|+.|++.+- +++.+.|.
T Consensus 273 L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~--------f~~ls~L~tL~L~~N-~it~~~~~aF 342 (498)
T KOG4237|consen 273 LPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKLEFVSSGM--------FQGLSGLKTLSLYDN-QITTVAPGAF 342 (498)
T ss_pred cccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchHHHHHHHh--------hhccccceeeeecCC-eeEEEecccc
Confidence 3577777776632 221 1234556678888888877766553222 134677888888764 56666553
Q ss_pred ccCCCccEEEEec
Q 026434 110 VFVQNLKKLRIEF 122 (238)
Q Consensus 110 ~~l~~L~~L~i~~ 122 (238)
..+.+|.+|.+-.
T Consensus 343 ~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 343 QTLFSLSTLNLLS 355 (498)
T ss_pred cccceeeeeehcc
Confidence 3455666665543
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=32.82 E-value=3.4 Score=31.50 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=46.0
Q ss_pred ceeEEEEeecCCCCC--cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-cccc
Q 026434 35 ITQSVGVYQCRSPPF--NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVF 111 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~--~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~ 111 (238)
-+..+.++.|.-+.- ....+....+|...+++++.++.++-.. ...|+-++.|++.+- ++.++| .+..
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kf--------t~kf~t~t~lNl~~n-eisdvPeE~Aa 98 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKF--------TIKFPTATTLNLANN-EISDVPEELAA 98 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHH--------hhccchhhhhhcchh-hhhhchHHHhh
Confidence 455566666653321 1223455567777777777655442111 123556667766653 566665 3566
Q ss_pred CCCccEEEEeccc
Q 026434 112 VQNLKKLRIEFCD 124 (238)
Q Consensus 112 l~~L~~L~i~~C~ 124 (238)
+|.|+.|+++.-+
T Consensus 99 m~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 99 MPALRSLNLRFNP 111 (177)
T ss_pred hHHhhhcccccCc
Confidence 7778877776543
No 74
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=29.31 E-value=26 Score=30.68 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=64.5
Q ss_pred ccccCCCcceeEEeee--hHHHHhhhcCchhhcceeEEEEeecCCCCC----cc-cchhhcccCCeEEEeecCCceEEec
Q 026434 4 LLGLKHLKVLSWSFGS--SLAVQKFLKYPKLVSITQSVGVYQCRSPPF----NV-FHLAYMENLQELELEYCNLEEMKID 76 (238)
Q Consensus 4 L~~L~~L~~L~i~~~~--~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~----~~-~~l~~l~~L~~L~i~~c~l~~i~~~ 76 (238)
++..+.|+.+.+...+ ...+..+.......++|+.|+|++-.- +. .+ ..++.+++|+.|++.+|.+++--..
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf-t~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF-TLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh-hhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 4455677777774322 122222333333346889998887431 11 11 1356778999999999985432100
Q ss_pred ccCccCcccccCCCCccEEEEecCCCCCcC------cccccCCCccEEEEecccc
Q 026434 77 STDEVKKLFQSGFRSLNTVHVFYCQKAKDL------TWLVFVQNLKKLRIEFCDD 125 (238)
Q Consensus 77 ~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l------~~~~~l~~L~~L~i~~C~~ 125 (238)
... ..-...+|+|+.|.+.++. ++.= ..+...|.|+.|++.+|.-
T Consensus 260 a~~---~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 260 AFV---DALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHH---HHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 000 0011247888888888773 3321 1234578888888888753
Done!