Query 026434
Match_columns 238
No_of_seqs 177 out of 1469
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 13:29:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.5 4.7E-13 1.6E-17 114.2 14.5 208 3-217 99-319 (328)
2 4fcg_A Uncharacterized protein 99.4 1.2E-11 4E-16 105.5 15.3 182 7-205 80-283 (328)
3 2xwt_C Thyrotropin receptor; s 99.2 1.5E-10 5.3E-15 93.8 12.9 150 34-205 55-211 (239)
4 4ezg_A Putative uncharacterize 99.2 5.5E-11 1.9E-15 93.8 8.5 130 34-191 44-175 (197)
5 3rfs_A Internalin B, repeat mo 99.2 1.5E-10 5E-15 95.9 10.1 158 5-192 38-198 (272)
6 1h6u_A Internalin H; cell adhe 99.1 2.8E-10 9.6E-15 96.0 10.4 35 88-123 127-161 (308)
7 3zyi_A Leucine-rich repeat-con 99.1 8.8E-10 3E-14 97.6 12.0 188 3-204 94-295 (452)
8 1ozn_A Reticulon 4 receptor; N 99.1 4.6E-10 1.6E-14 93.2 9.5 89 88-192 127-218 (285)
9 2xwt_C Thyrotropin receptor; s 99.1 1.8E-09 6.3E-14 87.3 12.8 164 3-193 50-223 (239)
10 3zyj_A Leucine-rich repeat-con 99.1 1.2E-09 4.1E-14 96.4 12.2 176 3-204 83-284 (440)
11 3rfs_A Internalin B, repeat mo 99.1 6.7E-10 2.3E-14 91.9 10.0 160 2-189 57-220 (272)
12 4fmz_A Internalin; leucine ric 99.1 6.5E-10 2.2E-14 94.7 10.0 112 6-123 42-165 (347)
13 1h6u_A Internalin H; cell adhe 99.0 3.7E-10 1.3E-14 95.3 8.0 163 6-191 39-211 (308)
14 1h6t_A Internalin B; cell adhe 99.0 4.6E-10 1.6E-14 94.0 8.2 77 34-123 68-144 (291)
15 1h6t_A Internalin B; cell adhe 99.0 6.3E-10 2.2E-14 93.2 8.6 150 2-185 62-211 (291)
16 4ezg_A Putative uncharacterize 99.0 2.5E-09 8.7E-14 84.1 11.6 149 6-185 42-192 (197)
17 1m9s_A Internalin B; cell inva 99.0 5.7E-10 1.9E-14 102.7 8.1 159 5-185 40-208 (605)
18 3zyj_A Leucine-rich repeat-con 99.0 1.7E-09 5.8E-14 95.4 10.8 181 8-204 64-260 (440)
19 4fmz_A Internalin; leucine ric 99.0 6.2E-10 2.1E-14 94.8 7.6 154 4-191 173-327 (347)
20 1m9s_A Internalin B; cell inva 99.0 7.6E-10 2.6E-14 101.9 7.7 140 33-191 42-191 (605)
21 2id5_A Lingo-1, leucine rich r 98.9 3.4E-09 1.1E-13 94.2 10.6 165 3-184 51-234 (477)
22 2o6q_A Variable lymphocyte rec 98.9 4.1E-09 1.4E-13 87.0 9.7 170 8-204 37-210 (270)
23 1p9a_G Platelet glycoprotein I 98.9 5.8E-09 2E-13 87.3 10.5 173 3-195 5-192 (290)
24 2o6q_A Variable lymphocyte rec 98.9 2E-08 6.7E-13 82.8 12.9 128 34-185 85-216 (270)
25 3zyi_A Leucine-rich repeat-con 98.9 3.9E-09 1.3E-13 93.5 9.1 111 8-130 75-188 (452)
26 2ast_B S-phase kinase-associat 98.9 1.8E-10 6.1E-15 97.7 0.1 109 5-124 90-206 (336)
27 3m19_A Variable lymphocyte rec 98.9 2.1E-08 7.1E-13 81.8 12.3 146 34-204 35-184 (251)
28 1xeu_A Internalin C; cellular 98.9 4E-09 1.4E-13 87.0 8.0 147 4-185 37-183 (263)
29 1o6v_A Internalin A; bacterial 98.9 1E-08 3.6E-13 91.0 10.9 159 3-185 194-364 (466)
30 2id5_A Lingo-1, leucine rich r 98.9 3E-08 1E-12 88.0 13.8 165 4-194 124-315 (477)
31 2ell_A Acidic leucine-rich nuc 98.9 1.2E-08 4.1E-13 78.0 9.6 135 33-193 23-165 (168)
32 1o6v_A Internalin A; bacterial 98.9 6.7E-09 2.3E-13 92.3 9.1 83 86-186 305-387 (466)
33 2ast_B S-phase kinase-associat 98.9 6.5E-10 2.2E-14 94.2 2.4 158 4-184 114-282 (336)
34 1ozn_A Reticulon 4 receptor; N 98.8 3.9E-08 1.3E-12 81.5 12.2 57 146-204 149-206 (285)
35 3vq2_A TLR4, TOLL-like recepto 98.8 2.5E-09 8.4E-14 97.8 4.9 59 144-204 491-550 (606)
36 3o6n_A APL1; leucine-rich repe 98.8 2E-08 6.9E-13 87.0 10.1 181 4-194 137-337 (390)
37 3o53_A Protein LRIM1, AGAP0063 98.8 1E-08 3.5E-13 86.6 7.7 81 89-185 168-248 (317)
38 2z62_A TOLL-like receptor 4, v 98.8 2.1E-08 7.2E-13 82.7 9.0 154 34-204 52-229 (276)
39 3v47_A TOLL-like receptor 5B a 98.8 7.5E-08 2.6E-12 84.7 12.6 59 144-204 341-400 (455)
40 3vq2_A TLR4, TOLL-like recepto 98.8 8.9E-09 3E-13 94.1 6.6 86 87-187 470-558 (606)
41 2o6s_A Variable lymphocyte rec 98.8 7.6E-08 2.6E-12 76.0 11.2 131 33-187 27-161 (208)
42 3bz5_A Internalin-J, INLJ; leu 98.7 2.9E-08 9.9E-13 88.3 9.6 100 4-123 38-137 (457)
43 2z66_A Variable lymphocyte rec 98.7 1.6E-08 5.4E-13 84.7 7.3 156 5-186 75-235 (306)
44 4eco_A Uncharacterized protein 98.7 3.2E-08 1.1E-12 91.5 9.6 182 3-191 201-419 (636)
45 1p9a_G Platelet glycoprotein I 98.7 2.7E-08 9.2E-13 83.2 8.0 83 88-185 122-206 (290)
46 4ecn_A Leucine-rich repeat pro 98.7 5.8E-08 2E-12 92.8 10.6 118 3-123 443-583 (876)
47 3oja_B Anopheles plasmodium-re 98.7 5.6E-08 1.9E-12 89.1 10.1 100 90-194 232-343 (597)
48 1xku_A Decorin; proteoglycan, 98.7 5.6E-08 1.9E-12 82.2 9.3 47 145-193 235-281 (330)
49 3o6n_A APL1; leucine-rich repe 98.7 3.6E-08 1.2E-12 85.4 8.3 123 35-185 227-350 (390)
50 3oja_A Leucine-rich immune mol 98.7 3E-08 1E-12 88.9 8.0 40 146-186 210-249 (487)
51 3m19_A Variable lymphocyte rec 98.7 8.9E-08 3E-12 78.0 10.1 130 33-186 58-191 (251)
52 3e6j_A Variable lymphocyte rec 98.7 1.3E-07 4.4E-12 76.2 10.6 127 34-185 40-170 (229)
53 2z80_A TOLL-like receptor 2, v 98.7 9.6E-08 3.3E-12 81.6 10.3 80 34-123 52-134 (353)
54 1xeu_A Internalin C; cellular 98.7 7.1E-08 2.4E-12 79.4 9.1 126 33-190 40-165 (263)
55 3o53_A Protein LRIM1, AGAP0063 98.7 2.7E-08 9.3E-13 84.0 6.3 187 6-205 32-243 (317)
56 3t6q_A CD180 antigen; protein- 98.7 1.2E-07 4.1E-12 86.5 11.0 140 34-185 301-460 (606)
57 2z66_A Variable lymphocyte rec 98.7 2.3E-08 7.7E-13 83.7 5.5 156 4-185 48-210 (306)
58 3rgz_A Protein brassinosteroid 98.7 5.4E-08 1.8E-12 91.8 8.7 120 3-123 95-233 (768)
59 4ay9_X Follicle-stimulating ho 98.6 2E-07 6.9E-12 79.7 11.5 55 146-205 198-252 (350)
60 2z80_A TOLL-like receptor 2, v 98.6 6E-08 2.1E-12 82.9 8.0 141 34-185 76-233 (353)
61 2z63_A TOLL-like receptor 4, v 98.6 1.6E-08 5.5E-13 91.5 4.5 179 6-204 323-523 (570)
62 1wwl_A Monocyte differentiatio 98.6 7.1E-08 2.4E-12 81.2 7.8 107 6-123 93-211 (312)
63 3e4g_A ATP synthase subunit S, 98.6 2E-08 6.8E-13 77.9 4.0 84 35-127 62-153 (176)
64 3e6j_A Variable lymphocyte rec 98.6 3.4E-07 1.2E-11 73.7 11.1 123 58-204 40-164 (229)
65 2z81_A CD282 antigen, TOLL-lik 98.6 7.6E-08 2.6E-12 86.7 8.0 157 5-193 331-491 (549)
66 2z7x_B TOLL-like receptor 1, v 98.6 2.3E-07 7.8E-12 83.2 11.0 156 35-204 303-473 (520)
67 2je0_A Acidic leucine-rich nuc 98.6 3.7E-08 1.3E-12 73.7 4.6 124 34-182 17-148 (149)
68 4glp_A Monocyte differentiatio 98.6 1.1E-07 3.6E-12 80.0 7.9 39 150-192 251-289 (310)
69 2v9t_B SLIT homolog 2 protein 98.6 4E-07 1.4E-11 72.9 10.8 127 34-184 32-162 (220)
70 2ft3_A Biglycan; proteoglycan, 98.6 1.3E-07 4.5E-12 80.1 8.3 88 90-193 193-282 (332)
71 1xku_A Decorin; proteoglycan, 98.6 4.4E-07 1.5E-11 76.6 11.5 147 34-205 121-269 (330)
72 1a9n_A U2A', U2A'; complex (nu 98.6 1.1E-07 3.7E-12 73.3 7.0 126 34-185 19-151 (176)
73 2v70_A SLIT-2, SLIT homolog 2 98.6 4.9E-07 1.7E-11 72.3 10.8 128 34-185 32-164 (220)
74 3oja_B Anopheles plasmodium-re 98.6 1.1E-07 3.8E-12 87.1 7.7 124 34-185 232-356 (597)
75 3bz5_A Internalin-J, INLJ; leu 98.6 6E-07 2E-11 79.8 12.1 141 33-193 41-188 (457)
76 1ogq_A PGIP-2, polygalacturona 98.6 2.9E-07 1E-11 77.5 9.7 103 87-192 146-262 (313)
77 3v47_A TOLL-like receptor 5B a 98.6 3.8E-07 1.3E-11 80.2 10.7 115 54-191 295-412 (455)
78 3t6q_A CD180 antigen; protein- 98.5 2.4E-07 8.1E-12 84.6 9.5 176 4-191 297-492 (606)
79 1ogq_A PGIP-2, polygalacturona 98.5 1.5E-07 5.2E-12 79.3 7.4 147 33-191 75-238 (313)
80 2xot_A Amphoterin-induced prot 98.5 3.9E-07 1.3E-11 78.3 9.8 135 33-192 38-180 (361)
81 2o6s_A Variable lymphocyte rec 98.5 1.1E-06 3.8E-11 69.3 11.6 124 57-204 27-153 (208)
82 4g8a_A TOLL-like receptor 4; l 98.5 2.2E-07 7.6E-12 84.6 8.4 128 33-184 51-183 (635)
83 2z81_A CD282 antigen, TOLL-lik 98.5 4.6E-07 1.6E-11 81.6 10.4 129 34-184 26-158 (549)
84 1ziw_A TOLL-like receptor 3; i 98.5 9.6E-08 3.3E-12 88.4 5.8 164 3-192 425-601 (680)
85 4eco_A Uncharacterized protein 98.5 1.3E-07 4.4E-12 87.4 6.4 175 6-193 247-451 (636)
86 2z63_A TOLL-like receptor 4, v 98.5 2.6E-07 8.7E-12 83.5 8.2 184 5-205 302-500 (570)
87 2z7x_B TOLL-like receptor 1, v 98.5 2.1E-07 7.1E-12 83.4 7.5 41 145-186 439-480 (520)
88 2ell_A Acidic leucine-rich nuc 98.5 2.5E-07 8.6E-12 70.5 7.0 111 57-192 23-137 (168)
89 3oja_A Leucine-rich immune mol 98.5 1.6E-07 5.4E-12 84.1 6.5 186 7-204 33-242 (487)
90 4ay9_X Follicle-stimulating ho 98.5 1.8E-06 6E-11 73.8 12.6 159 34-196 30-223 (350)
91 4ecn_A Leucine-rich repeat pro 98.5 2.3E-07 7.7E-12 88.7 7.6 109 6-124 489-606 (876)
92 3rgz_A Protein brassinosteroid 98.5 1.6E-07 5.5E-12 88.5 6.4 146 34-193 394-557 (768)
93 3e4g_A ATP synthase subunit S, 98.5 6.8E-08 2.3E-12 74.9 3.2 39 151-189 115-154 (176)
94 2z62_A TOLL-like receptor 4, v 98.5 4.4E-07 1.5E-11 74.7 8.2 128 33-184 27-159 (276)
95 2je0_A Acidic leucine-rich nuc 98.5 1.7E-07 5.9E-12 70.0 5.1 111 57-192 16-130 (149)
96 1jl5_A Outer protein YOPM; leu 98.4 5.3E-07 1.8E-11 80.0 8.7 136 34-192 131-274 (454)
97 1wwl_A Monocyte differentiatio 98.4 7.9E-07 2.7E-11 74.7 8.9 86 34-124 95-184 (312)
98 1dce_A Protein (RAB geranylger 98.4 9.3E-07 3.2E-11 80.7 9.4 120 35-180 442-566 (567)
99 3g06_A SSPH2 (leucine-rich rep 98.4 1.3E-06 4.3E-11 80.7 9.9 95 88-192 179-278 (622)
100 3ogk_B Coronatine-insensitive 98.4 1.6E-07 5.6E-12 85.3 3.7 42 147-190 485-528 (592)
101 1a9n_A U2A', U2A'; complex (nu 98.3 5.7E-07 1.9E-11 69.2 5.3 115 53-192 14-130 (176)
102 4g8a_A TOLL-like receptor 4; l 98.3 3.5E-06 1.2E-10 76.6 11.3 124 42-191 36-164 (635)
103 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 3.7E-06 1.3E-10 76.2 11.4 156 35-204 332-502 (562)
104 1jl5_A Outer protein YOPM; leu 98.3 1.5E-06 5E-11 77.2 8.2 75 34-123 173-247 (454)
105 3j0a_A TOLL-like receptor 5; m 98.3 1.3E-06 4.6E-11 83.1 8.0 81 34-123 48-133 (844)
106 1ziw_A TOLL-like receptor 3; i 98.3 2.4E-06 8.3E-11 79.0 9.6 133 34-191 49-187 (680)
107 2o6r_A Variable lymphocyte rec 98.3 3.7E-06 1.3E-10 64.5 9.1 105 58-185 28-135 (177)
108 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 1.3E-05 4.3E-10 72.7 14.1 178 8-204 276-478 (562)
109 3g06_A SSPH2 (leucine-rich rep 98.3 9.1E-07 3.1E-11 81.6 6.5 76 90-186 221-296 (622)
110 2p1m_B Transport inhibitor res 98.3 2.8E-07 9.7E-12 83.6 2.9 39 147-186 478-518 (594)
111 2p1m_B Transport inhibitor res 98.3 9.8E-08 3.4E-12 86.7 -0.3 86 34-123 130-221 (594)
112 2ft3_A Biglycan; proteoglycan, 98.3 7.1E-06 2.4E-10 69.3 11.2 79 34-123 54-133 (332)
113 2v9t_B SLIT homolog 2 protein 98.2 1.1E-05 3.8E-10 64.3 11.5 123 58-204 32-157 (220)
114 4glp_A Monocyte differentiatio 98.2 1.9E-06 6.3E-11 72.3 7.1 154 34-194 91-270 (310)
115 3ogk_B Coronatine-insensitive 98.2 3.3E-07 1.1E-11 83.2 1.1 39 147-185 433-474 (592)
116 2o6r_A Variable lymphocyte rec 98.2 6E-06 2.1E-10 63.3 8.1 106 33-161 27-135 (177)
117 4b8c_D Glucose-repressible alc 98.2 2.1E-06 7.1E-11 80.6 6.4 109 53-186 219-328 (727)
118 2v70_A SLIT-2, SLIT homolog 2 98.2 2.2E-05 7.6E-10 62.5 11.5 124 58-204 32-158 (220)
119 3j0a_A TOLL-like receptor 5; m 98.1 4.1E-05 1.4E-09 72.8 14.4 131 32-185 22-159 (844)
120 3cvr_A Invasion plasmid antige 98.1 9.7E-06 3.3E-10 74.0 8.9 56 9-73 60-115 (571)
121 2ca6_A RAN GTPase-activating p 98.1 1.1E-06 3.7E-11 75.9 2.2 13 173-185 273-285 (386)
122 2ca6_A RAN GTPase-activating p 98.0 1.4E-06 4.7E-11 75.2 2.4 37 149-186 273-315 (386)
123 2wfh_A SLIT homolog 2 protein 98.0 2.6E-05 9.1E-10 60.9 9.2 102 58-183 31-135 (193)
124 1w8a_A SLIT protein; signaling 98.0 1.8E-05 6.1E-10 61.7 8.1 34 89-123 77-112 (192)
125 2wfh_A SLIT homolog 2 protein 98.0 2E-05 7E-10 61.5 8.4 105 33-160 30-136 (193)
126 2xot_A Amphoterin-induced prot 98.0 4E-05 1.4E-09 65.6 10.8 113 58-193 39-154 (361)
127 3cvr_A Invasion plasmid antige 98.0 7.7E-06 2.6E-10 74.7 6.5 148 8-186 80-242 (571)
128 1ds9_A Outer arm dynein; leuci 98.0 4.6E-07 1.6E-11 71.1 -1.8 107 53-186 43-152 (198)
129 2ra8_A Uncharacterized protein 98.0 2E-06 7E-11 74.1 1.7 47 23-69 128-183 (362)
130 1ds9_A Outer arm dynein; leuci 97.9 2.8E-07 9.5E-12 72.4 -4.1 105 33-161 47-151 (198)
131 1w8a_A SLIT protein; signaling 97.9 7.1E-05 2.4E-09 58.2 9.3 106 58-185 29-137 (192)
132 1dce_A Protein (RAB geranylger 97.9 2.4E-05 8.3E-10 71.3 7.3 105 59-191 442-549 (567)
133 4b8c_D Glucose-repressible alc 97.7 3.8E-05 1.3E-09 72.0 6.0 102 34-160 224-326 (727)
134 2r9u_A Variable lymphocyte rec 97.6 0.00026 9E-09 54.2 9.1 34 88-122 55-90 (174)
135 3g39_A Variable lymphocyte rec 97.6 0.00026 8.7E-09 54.0 8.8 35 148-183 76-111 (170)
136 2ra8_A Uncharacterized protein 97.6 0.00012 4.2E-09 63.0 7.7 132 34-185 172-318 (362)
137 1z7x_W Ribonuclease inhibitor; 97.6 2.6E-06 9E-11 74.8 -3.0 85 90-185 313-409 (461)
138 3sb4_A Hypothetical leucine ri 97.6 0.0006 2E-08 57.3 11.2 40 148-191 248-289 (329)
139 1z7x_W Ribonuclease inhibitor; 97.6 2.7E-06 9.3E-11 74.8 -3.7 84 35-123 143-237 (461)
140 2r9u_A Variable lymphocyte rec 97.4 0.00026 8.9E-09 54.2 6.6 82 89-185 32-116 (174)
141 2ifg_A High affinity nerve gro 97.4 0.00057 1.9E-08 57.8 8.3 87 51-160 24-113 (347)
142 3goz_A Leucine-rich repeat-con 97.4 2.5E-05 8.6E-10 66.8 -0.3 14 172-185 251-264 (362)
143 3g39_A Variable lymphocyte rec 97.3 0.00048 1.7E-08 52.4 6.6 80 58-159 30-111 (170)
144 3sb4_A Hypothetical leucine ri 97.2 0.003 1E-07 53.0 10.8 32 149-181 225-257 (329)
145 2ifg_A High affinity nerve gro 97.1 0.0023 7.9E-08 53.9 9.4 85 86-184 27-113 (347)
146 3goz_A Leucine-rich repeat-con 97.0 7.1E-05 2.4E-09 64.0 -1.0 135 35-185 52-207 (362)
147 3un9_A NLR family member X1; l 96.0 0.00021 7.1E-09 61.7 -4.6 136 34-185 101-250 (372)
148 3un9_A NLR family member X1; l 95.5 0.00035 1.2E-08 60.2 -5.3 133 33-184 71-221 (372)
149 3rw6_A Nuclear RNA export fact 95.0 0.011 3.6E-07 48.6 2.4 13 57-69 169-181 (267)
150 4fdw_A Leucine rich hypothetic 94.7 0.21 7E-06 43.2 10.1 57 54-121 176-234 (401)
151 4fdw_A Leucine rich hypothetic 92.9 3 0.0001 35.8 14.0 60 146-209 319-380 (401)
152 3rw6_A Nuclear RNA export fact 92.6 0.099 3.4E-06 42.8 4.0 60 88-161 168-231 (267)
153 1io0_A Tropomodulin; LRR prote 90.6 0.029 9.8E-07 43.0 -1.3 113 34-160 36-161 (185)
154 1io0_A Tropomodulin; LRR prote 90.4 0.023 7.8E-07 43.6 -2.0 117 54-185 32-162 (185)
155 4gt6_A Cell surface protein; l 71.1 16 0.00054 30.8 8.1 32 148-181 309-341 (394)
156 4gt6_A Cell surface protein; l 62.8 38 0.0013 28.3 8.9 33 148-182 332-365 (394)
157 4fs7_A Uncharacterized protein 62.0 17 0.00059 30.5 6.5 77 88-182 295-374 (394)
158 4h09_A Hypothetical leucine ri 58.7 39 0.0013 27.9 8.1 10 89-98 239-248 (379)
159 4fs7_A Uncharacterized protein 48.2 49 0.0017 27.6 7.1 79 110-206 294-373 (394)
160 4h09_A Hypothetical leucine ri 47.1 1.2E+02 0.004 24.9 9.5 32 88-121 261-294 (379)
161 3rfe_A Platelet glycoprotein I 34.3 45 0.0015 23.3 4.0 15 59-73 32-46 (130)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.49 E-value=4.7e-13 Score=114.19 Aligned_cols=208 Identities=16% Similarity=0.154 Sum_probs=117.7
Q ss_pred cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccCcc
Q 026434 3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTDEV 81 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~ 81 (238)
++..+.+|+.|++...... .+.....-.++|+.|++.++.- ......+.++++|+.|++++|. +..++.......
T Consensus 99 ~l~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred hhhhCCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 3566788888888643322 2222223346788888888742 2212256778888888888887 655432111000
Q ss_pred CcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEecccccceecccccc-----------cccccccccccccc
Q 026434 82 KKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEIIGVDKL-----------RDISEIIGSEHNFF 149 (238)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~-----------~~~~~~~~~~~~~~ 149 (238)
.......+++|+.|+++++ +++.++ .+..+++|++|++.+|. +..++..-.. ....+.....+..+
T Consensus 175 ~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp -CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred chhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 0000112445555555554 344433 23444555555554442 2222110000 00000001355678
Q ss_pred cccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEEEchhhhhhhcccC
Q 026434 150 AQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWE 217 (238)
Q Consensus 150 p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~~~~~w~~~~~~~ 217 (238)
++|++|++.++..+..++.....+++|+.|++++|+.+..+|..-.. .++|+.+.....+...+.+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGSCC----
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHHHHHhhh
Confidence 99999999999888888877778999999999999999999965443 36788887776666555544
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.38 E-value=1.2e-11 Score=105.51 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=125.7
Q ss_pred cCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCccc-chhhcccCCeEEEeecCCceEEecccCccCccc
Q 026434 7 LKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVF-HLAYMENLQELELEYCNLEEMKIDSTDEVKKLF 85 (238)
Q Consensus 7 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~-~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~ 85 (238)
..+++.|++...... .+.....-.++|+.|++.++.- .. ++ .+.++++|++|++++|.+..++ ..
T Consensus 80 ~~~l~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~n~l-~~-lp~~~~~l~~L~~L~Ls~n~l~~lp---------~~ 145 (328)
T 4fcg_A 80 QPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGL-ME-LPDTMQQFAGLETLTLARNPLRALP---------AS 145 (328)
T ss_dssp STTCCEEEEESSCCS---SCCSCGGGGTTCSEEEEESSCC-CC-CCSCGGGGTTCSEEEEESCCCCCCC---------GG
T ss_pred ccceeEEEccCCCch---hcChhhhhCCCCCEEECCCCCc-cc-hhHHHhccCCCCEEECCCCccccCc---------HH
Confidence 467888888644332 3333233357899999998853 22 33 5788999999999999855552 23
Q ss_pred ccCCCCccEEEEecCCCCCcCcc-c---------ccCCCccEEEEecccccceecccccc-----------ccccccccc
Q 026434 86 QSGFRSLNTVHVFYCQKAKDLTW-L---------VFVQNLKKLRIEFCDDVEEIIGVDKL-----------RDISEIIGS 144 (238)
Q Consensus 86 ~~~l~~L~~L~i~~C~~L~~l~~-~---------~~l~~L~~L~i~~C~~l~~l~~~~~~-----------~~~~~~~~~ 144 (238)
...+++|+.|++++|..+..++. + ..+++|++|++.++ .+..++..-.. ....+.+ .
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-~ 223 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALG-P 223 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCC-G
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCc-h
Confidence 45689999999999988877763 2 24999999999987 44444221000 0011121 3
Q ss_pred ccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEEE
Q 026434 145 EHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIE 205 (238)
Q Consensus 145 ~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~ 205 (238)
.+..+++|++|+++++.....++.....+++|+.|++.+|..+..+|..-.. ..+|+.+.
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~ 283 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLD 283 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEE
T ss_pred hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEe
Confidence 4567889999999988888877776777899999999999999988865322 24555553
No 3
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.22 E-value=1.5e-10 Score=93.77 Aligned_cols=150 Identities=11% Similarity=0.040 Sum_probs=76.8
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCccccc
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVF 111 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 111 (238)
++|+.|++.++..+.. ....+.++++|++|++++|. ++.+..+. ...+++|+.|+++++ +++.++.+..
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~--------f~~l~~L~~L~l~~n-~l~~lp~~~~ 125 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA--------LKELPLLKFLGIFNT-GLKMFPDLTK 125 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS--------EECCTTCCEEEEEEE-CCCSCCCCTT
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH--------hCCCCCCCEEeCCCC-CCcccccccc
Confidence 4566666666543333 12234555666666666644 55442111 123556666666665 3555554445
Q ss_pred CCCcc---EEEEecccccceecccccccccccccccccccccccc-eeeccccccccccCCCCCCCCCccEEeEcCccCC
Q 026434 112 VQNLK---KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLE-YLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHL 187 (238)
Q Consensus 112 l~~L~---~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~-~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L 187 (238)
+++|+ +|++.++..+..+.. .....+++|+ .|++.+. +++.++......++|+.|++.+++++
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~------------~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPV------------NAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYL 192 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECT------------TTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTC
T ss_pred ccccccccEEECCCCcchhhcCc------------ccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCc
Confidence 55555 666666544544421 2234456666 6666543 34455543333356666666666666
Q ss_pred CCCCCCCCCCC-CcceEEE
Q 026434 188 KKLPLNSSSAK-ERRVVIE 205 (238)
Q Consensus 188 ~~lp~~~~~~~-~~L~~~~ 205 (238)
+.+|...-... .+|+.+.
T Consensus 193 ~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 193 TVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp CEECTTTTTTCSBCCSEEE
T ss_pred ccCCHHHhhccccCCcEEE
Confidence 66654433333 4454443
No 4
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=5.5e-11 Score=93.80 Aligned_cols=130 Identities=12% Similarity=0.197 Sum_probs=78.4
Q ss_pred cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCc--Cccccc
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD--LTWLVF 111 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~--l~~~~~ 111 (238)
++++.|++.++. +. .++.+..+++|+.|++++|.++.+ +....+++|+.|+++++ +++. ...+..
T Consensus 44 ~~L~~L~l~~n~-i~-~l~~l~~l~~L~~L~l~~n~~~~~----------~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~ 110 (197)
T 4ezg_A 44 NSLTYITLANIN-VT-DLTGIEYAHNIKDLTINNIHATNY----------NPISGLSNLERLRIMGK-DVTSDKIPNLSG 110 (197)
T ss_dssp HTCCEEEEESSC-CS-CCTTGGGCTTCSEEEEESCCCSCC----------GGGTTCTTCCEEEEECT-TCBGGGSCCCTT
T ss_pred CCccEEeccCCC-cc-ChHHHhcCCCCCEEEccCCCCCcc----------hhhhcCCCCCEEEeECC-ccCcccChhhcC
Confidence 567777777653 22 244566777777777777763322 12345677777777776 4554 344566
Q ss_pred CCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434 112 VQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 112 l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp 191 (238)
+++|++|++++|. +..... ..+..+++|++|+++++..++.++ ....+++|+.|++++|. ++.+|
T Consensus 111 l~~L~~L~Ls~n~-i~~~~~------------~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~ 175 (197)
T 4ezg_A 111 LTSLTLLDISHSA-HDDSIL------------TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR 175 (197)
T ss_dssp CTTCCEEECCSSB-CBGGGH------------HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT
T ss_pred CCCCCEEEecCCc-cCcHhH------------HHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH
Confidence 7777777777763 221100 234456777777777766566554 34456777777777764 45554
No 5
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.16 E-value=1.5e-10 Score=95.90 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=83.3
Q ss_pred cccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcc
Q 026434 5 LGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKL 84 (238)
Q Consensus 5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~ 84 (238)
..+.+|+.|.+.......+..+ ...++|+.|++.++. +. .++.+.++++|++|++++|.+..+....
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l----~~l~~L~~L~l~~n~-l~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~------- 104 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGI----QYLPNVRYLALGGNK-LH-DISALKELTNLTYLILTGNQLQSLPNGV------- 104 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTG----GGCTTCCEEECTTSC-CC-CCGGGTTCTTCCEEECTTSCCCCCCTTT-------
T ss_pred ccccceeeeeeCCCCccccccc----ccCCCCcEEECCCCC-CC-CchhhcCCCCCCEEECCCCccCccChhH-------
Confidence 3445566665543222222222 123567777777664 22 2445666777777777777644332111
Q ss_pred cccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccc
Q 026434 85 FQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGIN 162 (238)
Q Consensus 85 ~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~ 162 (238)
...+++|+.|+++++ +++.++. +..+++|++|++.+| .+..+.. .....+++|+.|++.++ +
T Consensus 105 -~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~l~~n-~ 168 (272)
T 3rfs_A 105 -FDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK------------GVFDKLTNLTELDLSYN-Q 168 (272)
T ss_dssp -TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-C
T ss_pred -hcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCH------------HHhccCccCCEEECCCC-C
Confidence 234667777777666 4555543 456677777777666 3333321 12344566666666655 3
Q ss_pred ccccCCCC-CCCCCccEEeEcCccCCCCCCC
Q 026434 163 LKGVYPNP-LPFPKLKKIKVRGCRHLKKLPL 192 (238)
Q Consensus 163 L~~i~~~~-~~~~~L~~L~i~~C~~L~~lp~ 192 (238)
++++.... ..+++|+.|+++++. ++.+|.
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 198 (272)
T 3rfs_A 169 LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPD 198 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred cCccCHHHhcCCccCCEEECCCCc-CCccCH
Confidence 44444322 345666666666653 444443
No 6
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.12 E-value=2.8e-10 Score=96.03 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=18.0
Q ss_pred CCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434 88 GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC 123 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C 123 (238)
.+++|+.|+++++ +++.++.+..+++|++|++++|
T Consensus 127 ~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 127 GLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC
Confidence 4455555555554 3444444455555555555554
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.07 E-value=8.8e-10 Score=97.62 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=100.5
Q ss_pred cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCcc
Q 026434 3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEV 81 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~ 81 (238)
.+.++.+|+.|++.......+. .....-.++|+.|++.++. +.. ....+..+++|++|+++++.++.+....
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---- 166 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYA---- 166 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTT----
T ss_pred HcCCCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhH----
Confidence 4667888888887533222111 0111123578888888764 232 2223566778888888877755443211
Q ss_pred CcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc----------cccccccccccccc
Q 026434 82 KKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL----------RDISEIIGSEHNFF 149 (238)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~----------~~~~~~~~~~~~~~ 149 (238)
...+++|+.|++++|..+..++. +..+++|++|++.++ ++..+...... ....+.....+..+
T Consensus 167 ----~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 167 ----FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp ----TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred ----HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCcccccCc
Confidence 12355555555555555544432 334455555555444 22222100000 00000111345667
Q ss_pred cccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 150 AQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 150 p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
++|+.|++.++ .++.+.. ....+++|+.|+++++ +++.+|........+|+.+
T Consensus 242 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 242 SSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEE
T ss_pred cCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEE
Confidence 88888888765 3555543 3456799999999998 7788886544333445443
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.07 E-value=4.6e-10 Score=93.24 Aligned_cols=89 Identities=15% Similarity=0.089 Sum_probs=55.1
Q ss_pred CCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc
Q 026434 88 GFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG 165 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 165 (238)
.+++|+.|+++++ +++.++. +..+++|++|++.++ .+..+.. ..+..+++|++|++.++. +++
T Consensus 127 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------~~~~~l~~L~~L~l~~n~-l~~ 191 (285)
T 1ozn_A 127 GLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPE------------RAFRGLHSLDRLLLHQNR-VAH 191 (285)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECT------------TTTTTCTTCCEEECCSSC-CCE
T ss_pred CCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCH------------HHhcCccccCEEECCCCc-ccc
Confidence 4566666666665 4555432 455666777766665 3333321 235567888888888764 555
Q ss_pred cC-CCCCCCCCccEEeEcCccCCCCCCC
Q 026434 166 VY-PNPLPFPKLKKIKVRGCRHLKKLPL 192 (238)
Q Consensus 166 i~-~~~~~~~~L~~L~i~~C~~L~~lp~ 192 (238)
+. .....+++|+.|+++++ +++.+|.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 218 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFAN-NLSALPT 218 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCSCCCH
T ss_pred cCHhHccCcccccEeeCCCC-cCCcCCH
Confidence 53 23456789999999887 5566663
No 9
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.07 E-value=1.8e-09 Score=87.34 Aligned_cols=164 Identities=10% Similarity=0.018 Sum_probs=116.1
Q ss_pred cccccCCCcceeEEeee-hHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCc
Q 026434 3 ELLGLKHLKVLSWSFGS-SLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDE 80 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~ 80 (238)
.+..+.+|+.|++.... ...+.. ....-.++|+.|++.+|..+.. ....+.++++|+.|++++|.++.++.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~--~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~----- 122 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD----- 122 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECT--TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-----
T ss_pred HccCCCCCcEEeCCCCCCcceeCH--hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-----
Confidence 35678899999987443 222221 0112235899999999877775 33456788999999999998554421
Q ss_pred cCcccccCCCCcc---EEEEecCCCCCcCcc--cccCCCcc-EEEEecccccceecccccccccccccccccccccccce
Q 026434 81 VKKLFQSGFRSLN---TVHVFYCQKAKDLTW--LVFVQNLK-KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEY 154 (238)
Q Consensus 81 ~~~~~~~~l~~L~---~L~i~~C~~L~~l~~--~~~l~~L~-~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~ 154 (238)
...+++|+ .|+++++++++.++. +..+++|+ +|++.++ .++.+.. ... ..++|+.
T Consensus 123 -----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~------------~~~-~~~~L~~ 183 (239)
T 2xwt_C 123 -----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQG------------YAF-NGTKLDA 183 (239)
T ss_dssp -----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECT------------TTT-TTCEEEE
T ss_pred -----cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCH------------hhc-CCCCCCE
Confidence 23456666 999999878888764 66789999 9999876 4554421 112 2278999
Q ss_pred eeccccccccccCCC-CCCC-CCccEEeEcCccCCCCCCCC
Q 026434 155 LTISWGINLKGVYPN-PLPF-PKLKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 155 L~L~~~~~L~~i~~~-~~~~-~~L~~L~i~~C~~L~~lp~~ 193 (238)
|++.+++.++.++.. ...+ ++|+.|+++++ +++.+|..
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~ 223 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK 223 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh
Confidence 999998888888754 3456 89999999984 57888866
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.06 E-value=1.2e-09 Score=96.42 Aligned_cols=176 Identities=15% Similarity=0.129 Sum_probs=99.0
Q ss_pred cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCcc
Q 026434 3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEV 81 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~ 81 (238)
.+.++.+|+.|++.......+.. ....-.++|+.|++.++. +.. ....+..+++|++|+++++.++.+....
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~---- 155 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEI--GAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYA---- 155 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECG--GGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTT----
T ss_pred HhhCCCCCCEEECCCCcCCccCh--hhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHH----
Confidence 46778888888876432221110 011113578888888763 333 2224667788888888877755443211
Q ss_pred CcccccCCCCccEEEEecCCC------------------------CCcCcccccCCCccEEEEecccccceecccccccc
Q 026434 82 KKLFQSGFRSLNTVHVFYCQK------------------------AKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRD 137 (238)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~C~~------------------------L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~ 137 (238)
...+++|+.|++.+|.. ++.++.+..+++|++|+++++ .+..+.+
T Consensus 156 ----~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------ 224 (440)
T 3zyj_A 156 ----FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN-HLSAIRP------ 224 (440)
T ss_dssp ----TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS-CCCEECT------
T ss_pred ----hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC-ccCccCh------
Confidence 12344455555544444 444444444445555555444 2332211
Q ss_pred cccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 138 ISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 138 ~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
..+..+++|+.|++.+. .++.+... ...+++|+.|+++++ +++.+|........+|+.+
T Consensus 225 ------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 225 ------GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp ------TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEE
T ss_pred ------hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEE
Confidence 34556788888888765 45555443 346789999999987 6777776543323444443
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.06 E-value=6.7e-10 Score=91.88 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=112.8
Q ss_pred ccccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCc
Q 026434 2 KELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDE 80 (238)
Q Consensus 2 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~ 80 (238)
..+..+.+|+.|++.......+..+. -.++|+.|++.++. +.. ....+.++++|+.|++++|.+..+...
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---- 127 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDISALK----ELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDG---- 127 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGGGT----TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----
T ss_pred cccccCCCCcEEECCCCCCCCchhhc----CCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHH----
Confidence 35677889999988543322222222 23689999999874 333 223367899999999999985544221
Q ss_pred cCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeecc
Q 026434 81 VKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTIS 158 (238)
Q Consensus 81 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~ 158 (238)
....+++|+.|+++++ +++.++. +..+++|++|++.+| .+..+.. ..+..+++|++|++.
T Consensus 128 ----~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 128 ----VFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPE------------GVFDKLTQLKDLRLY 189 (272)
T ss_dssp ----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECC
T ss_pred ----HhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCH------------HHhcCCccCCEEECC
Confidence 1246889999999998 6888764 578999999999998 4444421 234578999999998
Q ss_pred ccccccccCCC-CCCCCCccEEeEcCccCCCC
Q 026434 159 WGINLKGVYPN-PLPFPKLKKIKVRGCRHLKK 189 (238)
Q Consensus 159 ~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~ 189 (238)
++ .++++... ...+++|+.|++.+++-...
T Consensus 190 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 190 QN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp SS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CC-cCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 76 46666554 35689999999998764433
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.06 E-value=6.5e-10 Score=94.70 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=50.9
Q ss_pred ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEe----------
Q 026434 6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKI---------- 75 (238)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~---------- 75 (238)
.+++|+.|++.......++.+ ...++|+.|++.+|. +.. ++.+.++++|++|++++|.++.+..
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~----~~~~~L~~L~l~~n~-i~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGI----EYLTNLEYLNLNGNQ-ITD-ISPLSNLVKLTNLYIGTNKITDISALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTG----GGCTTCCEEECCSSC-CCC-CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccchhh----hhcCCccEEEccCCc-ccc-chhhhcCCcCCEEEccCCcccCchHHcCCCcCCEE
Confidence 455566666543332222221 112466666666652 222 2335566666666666655332210
Q ss_pred --cccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434 76 --DSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC 123 (238)
Q Consensus 76 --~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C 123 (238)
........+....+++|+.|++++|..+..++.+..+++|++|.+.+|
T Consensus 116 ~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165 (347)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred ECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence 000000001123455555555555555555444555555555555554
No 13
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.05 E-value=3.7e-10 Score=95.28 Aligned_cols=163 Identities=16% Similarity=0.229 Sum_probs=96.5
Q ss_pred ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCccc
Q 026434 6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLF 85 (238)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~ 85 (238)
.+.+|+.|++.......+..+ ...++|+.|++.++. +.. ++.+.++++|++|++++|.+..+ +.
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~----~~l~~L~~L~L~~n~-i~~-~~~~~~l~~L~~L~L~~n~l~~~----------~~ 102 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGV----QYLNNLIGLELKDNQ-ITD-LAPLKNLTKITELELSGNPLKNV----------SA 102 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTG----GGCTTCCEEECCSSC-CCC-CGGGTTCCSCCEEECCSCCCSCC----------GG
T ss_pred HcCCcCEEEeeCCCccCchhh----hccCCCCEEEccCCc-CCC-ChhHccCCCCCEEEccCCcCCCc----------hh
Confidence 456677776643322222222 223578888888774 232 34477788888888888875443 12
Q ss_pred ccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccccc----------cccccccccccccccccee
Q 026434 86 QSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLR----------DISEIIGSEHNFFAQLEYL 155 (238)
Q Consensus 86 ~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~----------~~~~~~~~~~~~~p~L~~L 155 (238)
...+++|+.|++++| +++.++.+..+++|++|++.++ .+..+....... ..... ..+..+++|+.|
T Consensus 103 ~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 178 (308)
T 1h6u_A 103 IAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTL 178 (308)
T ss_dssp GTTCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred hcCCCCCCEEECCCC-CCCCchhhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCC--hhhcCCCCCCEE
Confidence 356889999999888 5888877888999999999887 343332110000 00001 124455666666
Q ss_pred eccccccccccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434 156 TISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 156 ~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp 191 (238)
+++++ .++++.. ...+++|+.|++++| +++.+|
T Consensus 179 ~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~ 211 (308)
T 1h6u_A 179 KADDN-KISDISP-LASLPNLIEVHLKNN-QISDVS 211 (308)
T ss_dssp ECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCG
T ss_pred ECCCC-ccCcChh-hcCCCCCCEEEccCC-ccCccc
Confidence 66544 2333322 345678888888877 345554
No 14
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.04 E-value=4.6e-10 Score=93.98 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=39.7
Q ss_pred cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCC
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQ 113 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~ 113 (238)
++|+.|++.++. +.. +..+.++++|+.|++++|.++.+ +....+++|+.|+++++ +++.++.+..++
T Consensus 68 ~~L~~L~L~~n~-l~~-~~~l~~l~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~L~~n-~i~~~~~l~~l~ 134 (291)
T 1h6t_A 68 PNVTKLFLNGNK-LTD-IKPLANLKNLGWLFLDENKVKDL----------SSLKDLKKLKSLSLEHN-GISDINGLVHLP 134 (291)
T ss_dssp TTCCEEECCSSC-CCC-CGGGTTCTTCCEEECCSSCCCCG----------GGGTTCTTCCEEECTTS-CCCCCGGGGGCT
T ss_pred CCCCEEEccCCc-cCC-CcccccCCCCCEEECCCCcCCCC----------hhhccCCCCCEEECCCC-cCCCChhhcCCC
Confidence 456666666553 121 22355666666666666553322 11234555555555555 355554455555
Q ss_pred CccEEEEecc
Q 026434 114 NLKKLRIEFC 123 (238)
Q Consensus 114 ~L~~L~i~~C 123 (238)
+|++|+++++
T Consensus 135 ~L~~L~l~~n 144 (291)
T 1h6t_A 135 QLESLYLGNN 144 (291)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEccCC
Confidence 5555555554
No 15
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.03 E-value=6.3e-10 Score=93.16 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=110.1
Q ss_pred ccccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCcc
Q 026434 2 KELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEV 81 (238)
Q Consensus 2 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~ 81 (238)
+.+..+.+|+.|++.......+..+ .-.++|+.|++.++. +. .++.+..+++|++|++++|.+..+
T Consensus 62 ~~~~~l~~L~~L~L~~n~l~~~~~l----~~l~~L~~L~l~~n~-l~-~~~~l~~l~~L~~L~L~~n~i~~~-------- 127 (291)
T 1h6t_A 62 QGIQYLPNVTKLFLNGNKLTDIKPL----ANLKNLGWLFLDENK-VK-DLSSLKDLKKLKSLSLEHNGISDI-------- 127 (291)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGG----TTCTTCCEEECCSSC-CC-CGGGGTTCTTCCEEECTTSCCCCC--------
T ss_pred hhHhcCCCCCEEEccCCccCCCccc----ccCCCCCEEECCCCc-CC-CChhhccCCCCCEEECCCCcCCCC--------
Confidence 3466778888888764433333222 223689999999874 33 356688899999999999985544
Q ss_pred CcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434 82 KKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI 161 (238)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 161 (238)
+....+++|+.|+++++ +++.++.+..+++|++|++++| .+..+ ..+..+++|+.|+++++
T Consensus 128 --~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~--------------~~l~~l~~L~~L~L~~N- 188 (291)
T 1h6t_A 128 --NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDN-QISDI--------------VPLAGLTKLQNLYLSKN- 188 (291)
T ss_dssp --GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS-CCCCC--------------GGGTTCTTCCEEECCSS-
T ss_pred --hhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCC-ccccc--------------hhhcCCCccCEEECCCC-
Confidence 12356899999999988 6888888889999999999988 44444 22556899999999876
Q ss_pred cccccCCCCCCCCCccEEeEcCcc
Q 026434 162 NLKGVYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 162 ~L~~i~~~~~~~~~L~~L~i~~C~ 185 (238)
.++++.. ...+++|+.|++.+++
T Consensus 189 ~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 189 HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred cCCCChh-hccCCCCCEEECcCCc
Confidence 4555542 4568999999999875
No 16
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.03 E-value=2.5e-09 Score=84.14 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=95.0
Q ss_pred ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCccc
Q 026434 6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLF 85 (238)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~ 85 (238)
.+.+|+.|++.......+.. ....++|+.|++.+| .+. .++.+..+++|++|++++|.+..... ..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~l~~n-~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~--------~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTG----IEYAHNIKDLTINNI-HAT-NYNPISGLSNLERLRIMGKDVTSDKI--------PN 107 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTT----GGGCTTCSEEEEESC-CCS-CCGGGTTCTTCCEEEEECTTCBGGGS--------CC
T ss_pred hcCCccEEeccCCCccChHH----HhcCCCCCEEEccCC-CCC-cchhhhcCCCCCEEEeECCccCcccC--------hh
Confidence 45677777776433332222 222357888888888 333 35567778888888888877432111 22
Q ss_pred ccCCCCccEEEEecCCCCCc--CcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434 86 QSGFRSLNTVHVFYCQKAKD--LTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL 163 (238)
Q Consensus 86 ~~~l~~L~~L~i~~C~~L~~--l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L 163 (238)
...+++|+.|++++| +++. ...+..+++|++|++++|..+..+ ..+..+++|++|++.++. +
T Consensus 108 l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--------------~~l~~l~~L~~L~l~~n~-i 171 (197)
T 4ezg_A 108 LSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDI--------------MPLKTLPELKSLNIQFDG-V 171 (197)
T ss_dssp CTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCC--------------GGGGGCSSCCEEECTTBC-C
T ss_pred hcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcccc--------------HhhcCCCCCCEEECCCCC-C
Confidence 345788888888887 4555 334667888888888888655544 234567888888887763 5
Q ss_pred cccCCCCCCCCCccEEeEcCcc
Q 026434 164 KGVYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 164 ~~i~~~~~~~~~L~~L~i~~C~ 185 (238)
+.+. ....+++|+.|++.+.+
T Consensus 172 ~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 172 HDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCCT-TGGGCSSCCEEEECBC-
T ss_pred cChH-HhccCCCCCEEEeeCcc
Confidence 5544 34557788888877643
No 17
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.01 E-value=5.7e-10 Score=102.73 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=79.2
Q ss_pred cccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcc
Q 026434 5 LGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKL 84 (238)
Q Consensus 5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~ 84 (238)
..|.+|+.|++.......++.+ ..+++|+.|.|.++. +.. ++.+..+++|+.|++++|.+..+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l----~~l~~L~~L~Ls~N~-l~~-~~~l~~l~~L~~L~Ls~N~l~~l~---------- 103 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGI----QYLPNVTKLFLNGNK-LTD-IKPLTNLKNLGWLFLDENKIKDLS---------- 103 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTG----GGCTTCCEEECTTSC-CCC-CGGGGGCTTCCEEECCSSCCCCCT----------
T ss_pred hcCCCCCEEECcCCCCCCChHH----ccCCCCCEEEeeCCC-CCC-ChhhccCCCCCEEECcCCCCCCCh----------
Confidence 3455666666543322222221 223567777777663 222 334666777777777776643321
Q ss_pred cccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccc----------cccccccccccccccccce
Q 026434 85 FQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKL----------RDISEIIGSEHNFFAQLEY 154 (238)
Q Consensus 85 ~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~----------~~~~~~~~~~~~~~p~L~~ 154 (238)
....+++|+.|++++| ++..++.+..+++|+.|++++| .+..+...... ...... ..+..+++|+.
T Consensus 104 ~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~ 179 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQN 179 (605)
T ss_dssp TSTTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred hhccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCc--hhhccCCCCCE
Confidence 1233455555555544 3444444444555555555444 12211000000 000000 12456778888
Q ss_pred eeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434 155 LTISWGINLKGVYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 155 L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~ 185 (238)
|+|+++ .+.+++ ....+++|+.|++.+|+
T Consensus 180 L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 180 LYLSKN-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred EECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence 888765 444442 24457888888888775
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.00 E-value=1.7e-09 Score=95.45 Aligned_cols=181 Identities=13% Similarity=0.093 Sum_probs=104.8
Q ss_pred CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccc
Q 026434 8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQ 86 (238)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~ 86 (238)
.+++.|++.......+.. ....-.++|+.|++.++. +.. ....+.++++|+.|++++|.++.+..+ ..
T Consensus 64 ~~l~~L~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~ 132 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKV--NSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNG--------AF 132 (440)
T ss_dssp TTCSEEECCSCCCCEECT--TTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTT--------TS
T ss_pred CCCcEEEccCCcCCeeCH--HHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHh--------Hh
Confidence 456777765333222110 111223689999999874 333 334678899999999999986655322 23
Q ss_pred cCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceeccccc------------cccccccccccccccccc
Q 026434 87 SGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDK------------LRDISEIIGSEHNFFAQL 152 (238)
Q Consensus 87 ~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~------------~~~~~~~~~~~~~~~p~L 152 (238)
..+++|+.|+++++ +++.++. +..+++|++|++.+|..+..+....- ....... ..+..+++|
T Consensus 133 ~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 209 (440)
T 3zyj_A 133 VYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKL 209 (440)
T ss_dssp CSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSC
T ss_pred hccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCccc
Confidence 46899999999987 5777653 56889999999999887776632100 0000001 123344556
Q ss_pred ceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 153 EYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 153 ~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
+.|+|+++ .++.+.. ....+++|+.|++.++ +++.++...-....+|+.+
T Consensus 210 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 210 DELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp CEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEE
T ss_pred CEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEE
Confidence 66666554 3444432 2345667777777665 3444443322222344444
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.00 E-value=6.2e-10 Score=94.82 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=105.3
Q ss_pred ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCc
Q 026434 4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKK 83 (238)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~ 83 (238)
+..+.+|+.|++.......+..+ ...++|+.|.+.++.- .. +..+..+++|+.|++++|.+..+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l-~~-~~~~~~~~~L~~L~l~~n~l~~~~--------- 237 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISPL----ASLTSLHYFTAYVNQI-TD-ITPVANMTRLNSLKIGNNKITDLS--------- 237 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGGG----GGCTTCCEEECCSSCC-CC-CGGGGGCTTCCEEECCSSCCCCCG---------
T ss_pred hccCCCCCEEEccCCcccccccc----cCCCccceeecccCCC-CC-CchhhcCCcCCEEEccCCccCCCc---------
Confidence 56778888888754332222222 2235788898888743 22 344788899999999998854432
Q ss_pred ccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434 84 LFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL 163 (238)
Q Consensus 84 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L 163 (238)
....+++|+.|++++| .++.++.+..+++|++|++.+| .+..+ .....+++|+.|++.++. +
T Consensus 238 -~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~~L~~L~L~~n~-l 299 (347)
T 4fmz_A 238 -PLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDI--------------SVLNNLSQLNSLFLNNNQ-L 299 (347)
T ss_dssp -GGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGGGCTTCSEEECCSSC-C
T ss_pred -chhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCC--------------hhhcCCCCCCEEECcCCc-C
Confidence 1356889999999888 6777777788899999999887 44443 234567888888888774 3
Q ss_pred cccCC-CCCCCCCccEEeEcCccCCCCCC
Q 026434 164 KGVYP-NPLPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 164 ~~i~~-~~~~~~~L~~L~i~~C~~L~~lp 191 (238)
+.... ....+++|+.|++++|+ ++.++
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNH-ITDIR 327 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSS-CCCCG
T ss_pred CCcChhHhhccccCCEEEccCCc-ccccc
Confidence 33322 23457888888888887 55554
No 20
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.98 E-value=7.6e-10 Score=101.87 Aligned_cols=140 Identities=21% Similarity=0.301 Sum_probs=91.6
Q ss_pred hcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434 33 VSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV 112 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l 112 (238)
+.+|+.|.+.++. +. .++.+..+++|+.|++++|.+..+. ....+++|+.|++++| ++..++.+..+
T Consensus 42 L~~L~~L~l~~n~-i~-~l~~l~~l~~L~~L~Ls~N~l~~~~----------~l~~l~~L~~L~Ls~N-~l~~l~~l~~l 108 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IK-SVQGIQYLPNVTKLFLNGNKLTDIK----------PLTNLKNLGWLFLDEN-KIKDLSSLKDL 108 (605)
T ss_dssp HTTCCCCBCTTCC-CC-CCTTGGGCTTCCEEECTTSCCCCCG----------GGGGCTTCCEEECCSS-CCCCCTTSTTC
T ss_pred CCCCCEEECcCCC-CC-CChHHccCCCCCEEEeeCCCCCCCh----------hhccCCCCCEEECcCC-CCCCChhhccC
Confidence 3578888887764 23 3567888999999999999855442 2456899999999998 68888888899
Q ss_pred CCccEEEEecccccceecccccc----------cccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEc
Q 026434 113 QNLKKLRIEFCDDVEEIIGVDKL----------RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVR 182 (238)
Q Consensus 113 ~~L~~L~i~~C~~l~~l~~~~~~----------~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~ 182 (238)
++|+.|++.+|. +..+...... ...... ..+..+++|+.|+|+++ .+.++.. ...+++|+.|+++
T Consensus 109 ~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 109 KKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLS 183 (605)
T ss_dssp TTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECc
Confidence 999999998873 4333111000 000001 23445666777777655 2443332 4457888888888
Q ss_pred CccCCCCCC
Q 026434 183 GCRHLKKLP 191 (238)
Q Consensus 183 ~C~~L~~lp 191 (238)
+| ++..+|
T Consensus 184 ~N-~i~~l~ 191 (605)
T 1m9s_A 184 KN-HISDLR 191 (605)
T ss_dssp SS-CCCBCG
T ss_pred CC-CCCCCh
Confidence 76 344443
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.95 E-value=3.4e-09 Score=94.24 Aligned_cols=165 Identities=19% Similarity=0.193 Sum_probs=81.3
Q ss_pred cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCc-
Q 026434 3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDE- 80 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~- 80 (238)
.+..+.+|+.|++.......+. .....-.++|+.|++.++. +.. ....+.++++|++|++++|.+..+.......
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred HccCCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence 4567788888887532211110 1111123578888887763 232 2223566777777777776643332111100
Q ss_pred ---------------cCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccc
Q 026434 81 ---------------VKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIG 143 (238)
Q Consensus 81 ---------------~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~ 143 (238)
..+.....+++|+.|+++++ +++.++. +..+++|+.|++.++. +..+..
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~------------ 193 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRD------------ 193 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC-CCEECT------------
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc-CcEeCh------------
Confidence 00112234455555555555 3444432 3455555655555542 222211
Q ss_pred cccccccccceeeccccccccccCCCCCCCCCccEEeEcCc
Q 026434 144 SEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGC 184 (238)
Q Consensus 144 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C 184 (238)
..+..+++|+.|++.+++.+..++.......+|+.|++.+|
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred hhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 23445667777777766655555543333345555555544
No 22
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.93 E-value=4.1e-09 Score=86.98 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=106.2
Q ss_pred CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccc
Q 026434 8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQ 86 (238)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~ 86 (238)
.+|+.|++.......+.. ....-.++|+.|++.++. +.. ....+.++++|++|+++++.+..+.... .
T Consensus 37 ~~l~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~ 105 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPS--KAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGV--------F 105 (270)
T ss_dssp TTCSEEECCSSCCSCCCT--TSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT--------T
T ss_pred CCCCEEECcCCCCCeeCH--HHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhH--------c
Confidence 357777765332222211 011223689999998864 232 2223567889999999988855443221 2
Q ss_pred cCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccc
Q 026434 87 SGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLK 164 (238)
Q Consensus 87 ~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~ 164 (238)
..+++|+.|+++++ +++.++. +..+++|++|++.++ .+..+.. ..+..+++|++|++.++ .++
T Consensus 106 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------------~~~~~l~~L~~L~L~~n-~l~ 170 (270)
T 2o6q_A 106 DQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPK------------GVFDKLTSLKELRLYNN-QLK 170 (270)
T ss_dssp TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCS
T ss_pred ccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCH------------hHccCCcccceeEecCC-cCc
Confidence 45788999999886 5666653 567889999999887 3443321 23456788888888765 456
Q ss_pred ccCCC-CCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 165 GVYPN-PLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 165 ~i~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
.+... ...+++|+.|+++++ +++.+|........+|+.+
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred EeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEE
Confidence 65543 345788888888887 6777776543333455544
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.92 E-value=5.8e-09 Score=87.26 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=94.4
Q ss_pred cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCcc
Q 026434 3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEV 81 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~ 81 (238)
++.++.+++.++++.. .+..+... +.+.++.|++.++. +.. ....+..+++|+.|+++++.+..+...
T Consensus 5 ~~~~l~~l~~l~~~~~---~l~~ip~~--~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----- 73 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKR---NLTALPPD--LPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD----- 73 (290)
T ss_dssp EEECSTTCCEEECTTS---CCSSCCSC--CCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-----
T ss_pred cccccCCccEEECCCC---CCCcCCCC--CCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-----
Confidence 4567777877775422 22233221 23678899888764 232 234577788999999988876655432
Q ss_pred CcccccCCCCccEEEEecCCCCCcCcc-cccCCCccEEEEecccccceecccc--c----------cccccccccccccc
Q 026434 82 KKLFQSGFRSLNTVHVFYCQKAKDLTW-LVFVQNLKKLRIEFCDDVEEIIGVD--K----------LRDISEIIGSEHNF 148 (238)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~l~~L~~L~i~~C~~l~~l~~~~--~----------~~~~~~~~~~~~~~ 148 (238)
..+++|+.|+++++ +++.++. +..+++|++|+++++ ++..+.... . .......+......
T Consensus 74 -----~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 74 -----GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146 (290)
T ss_dssp -----SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred -----CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence 23445555555444 3444332 234444444444443 222221100 0 00000011023346
Q ss_pred ccccceeeccccccccccCCCC-CCCCCccEEeEcCccCCCCCCCCCC
Q 026434 149 FAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKVRGCRHLKKLPLNSS 195 (238)
Q Consensus 149 ~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~~C~~L~~lp~~~~ 195 (238)
+++|+.|++.+. .+++++... ..+++|+.|+++++ +++.+|....
T Consensus 147 l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~ 192 (290)
T 1p9a_G 147 TPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192 (290)
T ss_dssp CTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred ccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhc
Confidence 778888888765 467776544 45789999999886 4677876543
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.90 E-value=2e-08 Score=82.84 Aligned_cols=128 Identities=17% Similarity=0.169 Sum_probs=67.8
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV 110 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~ 110 (238)
++|+.|++.++. +.. ....+..+++|++|+++++.+..+.... ...+++|+.|+++++ +++.++. +.
T Consensus 85 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 154 (270)
T 2o6q_A 85 KNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--------FDSLTKLTYLSLGYN-ELQSLPKGVFD 154 (270)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHH--------hCcCcCCCEEECCCC-cCCccCHhHcc
Confidence 456666666553 222 2223455666777776666644332111 234666677776665 4555543 45
Q ss_pred cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCcc
Q 026434 111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCR 185 (238)
Q Consensus 111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~ 185 (238)
.+++|++|++.++ .+..+.. ..+..+++|++|++.++ .++.++.. ...+++|+.|++.+.|
T Consensus 155 ~l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 155 KLTSLKELRLYNN-QLKRVPE------------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccceeEecCC-cCcEeCh------------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 5666777766665 2332211 12344566666666655 45555443 2345666666666554
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.90 E-value=3.9e-09 Score=93.46 Aligned_cols=111 Identities=13% Similarity=0.015 Sum_probs=76.8
Q ss_pred CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccc
Q 026434 8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQ 86 (238)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~ 86 (238)
.+|+.|++.......+. .....-.++|+.|++.++. +.. ....+.++++|+.|++++|.+..+..+. .
T Consensus 75 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~ 143 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGA--------F 143 (452)
T ss_dssp TTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBCCTTT--------S
T ss_pred CCccEEECcCCcCceEC--HHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCccChhh--------h
Confidence 46777877533222211 1111223689999998874 333 3346788999999999999866553221 2
Q ss_pred cCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceec
Q 026434 87 SGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEII 130 (238)
Q Consensus 87 ~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~ 130 (238)
..+++|+.|+++++ +++.++. +..+++|++|++.+|..+..+.
T Consensus 144 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 144 EYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred cccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 46899999999988 5777653 5689999999999998887764
No 26
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.89 E-value=1.8e-10 Score=97.69 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=59.2
Q ss_pred cccCCCcceeEEeee--hHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCc
Q 026434 5 LGLKHLKVLSWSFGS--SLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDE 80 (238)
Q Consensus 5 ~~L~~L~~L~i~~~~--~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~ 80 (238)
..+.+|+.|+++... ...+...+.. .++|++|++.+|. +.. ....+.++++|++|++++|. +....+.
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~---~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~---- 161 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQ---CSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ---- 161 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTT---BCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH----
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhh---CCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH----
Confidence 345677777764332 1223333332 2477777777773 332 23345567777777777774 5421000
Q ss_pred cCcccccCCCCccEEEEecCCCCCcC--c-ccccCC-CccEEEEeccc
Q 026434 81 VKKLFQSGFRSLNTVHVFYCQKAKDL--T-WLVFVQ-NLKKLRIEFCD 124 (238)
Q Consensus 81 ~~~~~~~~l~~L~~L~i~~C~~L~~l--~-~~~~l~-~L~~L~i~~C~ 124 (238)
.....+++|+.|++++|.++++. + .+..++ +|++|++.+|.
T Consensus 162 ---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 162 ---TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp ---HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred ---HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 01134666777777776556542 2 244566 67777776664
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.88 E-value=2.1e-08 Score=81.79 Aligned_cols=146 Identities=13% Similarity=0.156 Sum_probs=98.8
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccc
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLV 110 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~ 110 (238)
..++.|.+.++.- .. ....+.++++|++|+++++.+..+... ....+++|+.|+++++ +++.++ .+.
T Consensus 35 ~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAG--------VFDDLTELGTLGLANN-QLASLPLGVFD 104 (251)
T ss_dssp TTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCCCCCTT--------TTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred CCCCEEEccCCCc-CccCHhHhcCcccCCEEECCCCcCCccCHh--------HhccCCcCCEEECCCC-cccccChhHhc
Confidence 5788999888752 22 223577889999999999885544221 1245788999999887 577765 346
Q ss_pred cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCCCC
Q 026434 111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHLKK 189 (238)
Q Consensus 111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~ 189 (238)
.+++|++|++.++ .+..+.. .....+++|++|++++. +++++... ...+++|+.|+++++ +++.
T Consensus 105 ~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 169 (251)
T 3m19_A 105 HLTQLDKLYLGGN-QLKSLPS------------GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQS 169 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred ccCCCCEEEcCCC-cCCCcCh------------hHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCc
Confidence 7889999999886 4544421 23456788888888876 56776653 346788899988887 5666
Q ss_pred CCCCCCCCCCcceEE
Q 026434 190 LPLNSSSAKERRVVI 204 (238)
Q Consensus 190 lp~~~~~~~~~L~~~ 204 (238)
+|........+|+.+
T Consensus 170 ~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 170 VPHGAFDRLGKLQTI 184 (251)
T ss_dssp CCTTTTTTCTTCCEE
T ss_pred cCHHHHhCCCCCCEE
Confidence 665433333455554
No 28
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.88 E-value=4e-09 Score=86.99 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=91.9
Q ss_pred ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCc
Q 026434 4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKK 83 (238)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~ 83 (238)
+..+.+|+.|++.......++.+ ...++|+.|++.++. +.. ++.+.++++|+.|++++|.++.+.
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l----~~l~~L~~L~L~~N~-i~~-~~~l~~l~~L~~L~L~~N~l~~l~--------- 101 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGM----QFFTNLKELHLSHNQ-ISD-LSPLKDLTKLEELSVNRNRLKNLN--------- 101 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTG----GGCTTCCEEECCSSC-CCC-CGGGTTCSSCCEEECCSSCCSCCT---------
T ss_pred hhhcCcCcEEECcCCCcccchHH----hhCCCCCEEECCCCc-cCC-ChhhccCCCCCEEECCCCccCCcC---------
Confidence 34556666666543322222221 223567777777663 232 333667777777777777744331
Q ss_pred ccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434 84 LFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL 163 (238)
Q Consensus 84 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L 163 (238)
.... ++|+.|+++++ +++.++.+..+++|++|+++++ ++..+ ..+..+++|+.|+++++ .+
T Consensus 102 -~~~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N-~i~~~--------------~~l~~l~~L~~L~L~~N-~i 162 (263)
T 1xeu_A 102 -GIPS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNN-KLKSI--------------VMLGFLSKLEVLDLHGN-EI 162 (263)
T ss_dssp -TCCC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTS-CCCBC--------------GGGGGCTTCCEEECTTS-CC
T ss_pred -cccc-CcccEEEccCC-ccCCChhhcCcccccEEECCCC-cCCCC--------------hHHccCCCCCEEECCCC-cC
Confidence 1122 77888888887 6777777778888888888776 34433 23456788999998875 35
Q ss_pred cccCCCCCCCCCccEEeEcCcc
Q 026434 164 KGVYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 164 ~~i~~~~~~~~~L~~L~i~~C~ 185 (238)
+++ .....+++|+.|++++++
T Consensus 163 ~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 163 TNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CBC-TTSTTCCCCCEEEEEEEE
T ss_pred cch-HHhccCCCCCEEeCCCCc
Confidence 554 334567889999998775
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.87 E-value=1e-08 Score=91.02 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=81.0
Q ss_pred cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEE--------
Q 026434 3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMK-------- 74 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~-------- 74 (238)
.+..+.+|+.|++.......... ....++|+.|++.++. +. .+..+..+++|+.|++++|.+..+.
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L 267 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LK-DIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 267 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CC-CCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred hhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCC-cc-cchhhhcCCCCCEEECCCCccccchhhhcCCCC
Confidence 35667788888775433222211 1223578888887764 22 2455667777888877776633221
Q ss_pred ----ecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccccccccccccccccccc
Q 026434 75 ----IDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFA 150 (238)
Q Consensus 75 ----~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p 150 (238)
+........+....+++|+.|++++| +++.++.+..+++|++|++.+| .+..+ .....++
T Consensus 268 ~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~--------------~~~~~l~ 331 (466)
T 1o6v_A 268 TELKLGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISDI--------------SPVSSLT 331 (466)
T ss_dssp SEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSCC--------------GGGGGCT
T ss_pred CEEECCCCccCccccccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC-cCCCc--------------hhhccCc
Confidence 10000000111334555566666555 3555554555666666666555 22222 1233456
Q ss_pred ccceeeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434 151 QLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 151 ~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~ 185 (238)
+|+.|++.++ .++++. ....+++|+.|++++|.
T Consensus 332 ~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 332 KLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp TCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred cCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 6666666654 333331 22345566666666554
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.87 E-value=3e-08 Score=88.05 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=88.6
Q ss_pred ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccC
Q 026434 4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVK 82 (238)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~ 82 (238)
+..+.+|+.|++.......+. .....-.++|+.|++.++. +.. ....+.++++|+.|+++++.+..+....
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~----- 195 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYS----- 195 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTC-----
T ss_pred ccccccCCEEECCCCccceeC--hhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhh-----
Confidence 566778888877532111110 0011122577888887763 232 2223566777777777776644332111
Q ss_pred cccccCCCCccEEEEecCC-----------------------CCCcCc--ccccCCCccEEEEecccccceecccccccc
Q 026434 83 KLFQSGFRSLNTVHVFYCQ-----------------------KAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKLRD 137 (238)
Q Consensus 83 ~~~~~~l~~L~~L~i~~C~-----------------------~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~ 137 (238)
...+++|+.|++++|. +++.++ .+..+++|++|+++++. +..+..
T Consensus 196 ---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------ 265 (477)
T 2id5_A 196 ---FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG------ 265 (477)
T ss_dssp ---SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT------
T ss_pred ---cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh------
Confidence 1234444444444443 344443 23455556666655542 322211
Q ss_pred cccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCC
Q 026434 138 ISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNS 194 (238)
Q Consensus 138 ~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~ 194 (238)
..+..+++|+.|+|.++ .++.+.. ....+++|+.|+++++ +++.+|...
T Consensus 266 ------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 315 (477)
T 2id5_A 266 ------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESV 315 (477)
T ss_dssp ------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGG
T ss_pred ------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhH
Confidence 33456788888888765 3555533 3446788999998887 567776543
No 31
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.86 E-value=1.2e-08 Score=77.98 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=97.3
Q ss_pred hcceeEEEEeecCCCC-Ccccc-hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCc-Cccc
Q 026434 33 VSITQSVGVYQCRSPP-FNVFH-LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD-LTWL 109 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~-~~~~~-l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~~~ 109 (238)
.++++.|++.+|. +. ..++. +..+++|+.|++++|.+..+ . ....+++|+.|+++++ ++.. ++..
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~N-~l~~~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--S--------NLPKLPKLKKLELSEN-RIFGGLDML 90 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--S--------SCCCCSSCCEEEEESC-CCCSCCCHH
T ss_pred cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--h--------hhccCCCCCEEECcCC-cCchHHHHH
Confidence 3689999999986 33 12333 57899999999999986544 1 2346899999999998 5666 5543
Q ss_pred -ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC----CCCCCCCccEEeEcCc
Q 026434 110 -VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP----NPLPFPKLKKIKVRGC 184 (238)
Q Consensus 110 -~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~----~~~~~~~L~~L~i~~C 184 (238)
..+++|++|++.++ .+..+... ..+..+++|++|++.++ .+..++. ....+++|+.|++.+|
T Consensus 91 ~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 91 AEKLPNLTHLNLSGN-KLKDISTL-----------EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp HHHCTTCCEEECBSS-SCCSSGGG-----------GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred HhhCCCCCEEeccCC-ccCcchhH-----------HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 45999999999988 45443210 24457899999999877 3555543 2456899999999998
Q ss_pred cCCCCCCCC
Q 026434 185 RHLKKLPLN 193 (238)
Q Consensus 185 ~~L~~lp~~ 193 (238)
+ ++.+|..
T Consensus 158 ~-~~~~~~~ 165 (168)
T 2ell_A 158 E-DQEAPDS 165 (168)
T ss_dssp T-SCBCCSS
T ss_pred C-hhhcccc
Confidence 5 4556644
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.86 E-value=6.7e-09 Score=92.27 Aligned_cols=83 Identities=11% Similarity=0.259 Sum_probs=65.5
Q ss_pred ccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc
Q 026434 86 QSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG 165 (238)
Q Consensus 86 ~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 165 (238)
...+++|+.|++++| ++..++.+..+++|++|++.+| .+..+ ..+..+++|+.|++.++. +.+
T Consensus 305 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~l~~l~~L~~L~l~~n~-l~~ 367 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN-KVSDV--------------SSLANLTNINWLSAGHNQ-ISD 367 (466)
T ss_dssp GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCCCC--------------GGGTTCTTCCEEECCSSC-CCB
T ss_pred hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCC-ccCCc--------------hhhccCCCCCEEeCCCCc-cCc
Confidence 467899999999998 6888777889999999999998 44443 244568999999998874 454
Q ss_pred cCCCCCCCCCccEEeEcCccC
Q 026434 166 VYPNPLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 166 i~~~~~~~~~L~~L~i~~C~~ 186 (238)
+.. ...+++|+.|++.+|+-
T Consensus 368 ~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 368 LTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CGG-GTTCTTCCEEECCCEEE
T ss_pred cch-hhcCCCCCEEeccCCcc
Confidence 443 56789999999999853
No 33
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.86 E-value=6.5e-10 Score=94.20 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=106.5
Q ss_pred ccccCCCcceeEEeeeh--HHHHhhhcCchhhcceeEEEEeecCCCCC-cccc-hhhcccCCeEEEeecC-CceEEeccc
Q 026434 4 LLGLKHLKVLSWSFGSS--LAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFH-LAYMENLQELELEYCN-LEEMKIDST 78 (238)
Q Consensus 4 L~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~-l~~l~~L~~L~i~~c~-l~~i~~~~~ 78 (238)
+..+.+|+.|++..... .....+.. .++|+.|++.+|..+.. .++. +.++++|++|++++|. +....+.
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~----~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-- 187 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ-- 187 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTT----CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhc----CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--
Confidence 56788999999864432 23333333 36899999999976654 2343 6789999999999994 6532110
Q ss_pred CccCcccccCCC-CccEEEEecCC-CCCc--Cc-ccccCCCccEEEEecccccceecccccccccccccccccccccccc
Q 026434 79 DEVKKLFQSGFR-SLNTVHVFYCQ-KAKD--LT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLE 153 (238)
Q Consensus 79 ~~~~~~~~~~l~-~L~~L~i~~C~-~L~~--l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~ 153 (238)
.....++ +|+.|++++|. .+++ ++ .+..+++|++|++.+|..+..... ..+..+++|+
T Consensus 188 -----~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~------------~~l~~l~~L~ 250 (336)
T 2ast_B 188 -----VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFQLNYLQ 250 (336)
T ss_dssp -----HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG------------GGGGGCTTCC
T ss_pred -----HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH------------HHHhCCCCCC
Confidence 1124578 99999999986 4543 22 345789999999999865442211 3445678999
Q ss_pred eeeccccccccccCC-CCCCCCCccEEeEcCc
Q 026434 154 YLTISWGINLKGVYP-NPLPFPKLKKIKVRGC 184 (238)
Q Consensus 154 ~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C 184 (238)
+|++.+|..+..-.. ....+++|+.|++.+|
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999998874433211 1335889999999988
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.82 E-value=3.9e-08 Score=81.48 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=33.8
Q ss_pred cccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 146 HNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 146 ~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
+..+++|++|++.++ +++++... ...+++|+.|++.++. ++.++...-....+|+.+
T Consensus 149 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred hccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEe
Confidence 456778888888765 46666543 3457888888888874 444432222222445544
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.81 E-value=2.5e-09 Score=97.78 Aligned_cols=59 Identities=12% Similarity=0.028 Sum_probs=39.6
Q ss_pred cccccccccceeecccccccccc-CCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 144 SEHNFFAQLEYLTISWGINLKGV-YPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 144 ~~~~~~p~L~~L~L~~~~~L~~i-~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
..+..+++|++|+++++ +++++ +.....+++|+.|++++|. ++.+|..-...+.+|+.+
T Consensus 491 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFF 550 (606)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEE
T ss_pred hhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEE
Confidence 34567888999999877 45544 3334568899999999985 788887633222345544
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.80 E-value=2e-08 Score=86.95 Aligned_cols=181 Identities=16% Similarity=0.175 Sum_probs=97.7
Q ss_pred ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCc---
Q 026434 4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDE--- 80 (238)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~--- 80 (238)
+..+.+|+.|++.......+. .....-.++|+.|++.++. +.. ..+..+++|+.|+++++.+..+.....-.
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~ 211 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNR-LTH--VDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSC-CSB--CCGGGCTTCSEEECCSSCCSEEECCSSCSEEE
T ss_pred hcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCc-CCc--cccccccccceeecccccccccCCCCcceEEE
Confidence 467888999987643222111 1111223678999988864 222 23455667777777665533332110000
Q ss_pred -----cCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccc--c----------cccccccc
Q 026434 81 -----VKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDK--L----------RDISEIIG 143 (238)
Q Consensus 81 -----~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~--~----------~~~~~~~~ 143 (238)
........+++|+.|+++++ +++..+++..+++|++|+++++ .+..+.+..- . ....+.+
T Consensus 212 l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 288 (390)
T 3o6n_A 212 ASHNSINVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALN- 288 (390)
T ss_dssp CCSSCCCEEECCCCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSCCCEEE-
T ss_pred CCCCeeeeccccccccccEEECCCC-CCcccHHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCcCcccC-
Confidence 00011233567888888776 5666677777788888888776 3333321100 0 0000010
Q ss_pred cccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCC
Q 026434 144 SEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNS 194 (238)
Q Consensus 144 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~ 194 (238)
.....+|+|+.|+++++ .++.++.....+++|+.|++++++ ++.+|...
T Consensus 289 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~ 337 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLST 337 (390)
T ss_dssp CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT
T ss_pred cccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCchh
Confidence 22345677777777766 455554444456788888888875 56666443
No 37
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.79 E-value=1e-08 Score=86.55 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=36.5
Q ss_pred CCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC
Q 026434 89 FRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP 168 (238)
Q Consensus 89 l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~ 168 (238)
+++|+.|+++++ +++.++....+++|++|+++++ .+..+. ..+..+++|+.|+++++ .++.++.
T Consensus 168 l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~-------------~~~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 168 SDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN-KLAFMG-------------PEFQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp TTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS-CCCEEC-------------GGGGGGTTCSEEECTTS-CCCEECT
T ss_pred cCcCCEEECCCC-cCcccccccccccCCEEECCCC-cCCcch-------------hhhcccCcccEEECcCC-cccchhh
Confidence 344555555444 3444433334455555555444 222221 12334455555555544 3444444
Q ss_pred CCCCCCCccEEeEcCcc
Q 026434 169 NPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 169 ~~~~~~~L~~L~i~~C~ 185 (238)
....+++|+.|++.+++
T Consensus 232 ~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TCCCCTTCCEEECTTCC
T ss_pred HhhcCCCCCEEEccCCC
Confidence 33444555555555543
No 38
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.78 E-value=2.1e-08 Score=82.75 Aligned_cols=154 Identities=14% Similarity=0.186 Sum_probs=75.2
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCcc----------------CcccccCCCCccEEE
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEV----------------KKLFQSGFRSLNTVH 96 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~----------------~~~~~~~l~~L~~L~ 96 (238)
++|+.|++.++. +.. ....+.++++|+.|+++++.+..+..+..... .......+++|+.|+
T Consensus 52 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 52 PELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp TTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred cCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 567777777763 232 22245667777777777776444432211100 001123445555555
Q ss_pred EecCCCCCc--Cc-ccccCCCccEEEEecccccceecccccccccccccccccccccccc----eeeccccccccccCCC
Q 026434 97 VFYCQKAKD--LT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLE----YLTISWGINLKGVYPN 169 (238)
Q Consensus 97 i~~C~~L~~--l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~----~L~L~~~~~L~~i~~~ 169 (238)
++++ +++. ++ .+..+++|++|++.++ .+..+.. ..+..+++|+ +|++++. .++.+...
T Consensus 131 l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~ 195 (276)
T 2z62_A 131 VAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC------------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPG 195 (276)
T ss_dssp CCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG------------GGGHHHHTCTTCCEEEECCSS-CCCEECTT
T ss_pred CcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCH------------HHhhhhhhccccceeeecCCC-cccccCcc
Confidence 5554 2333 11 3444555555555554 2222211 1222333444 4444432 34445444
Q ss_pred CCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 170 PLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 170 ~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
.....+|+.|+++++. ++.+|........+|+.+
T Consensus 196 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 196 AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEE
T ss_pred ccCCCcccEEECCCCc-eeecCHhHhcccccccEE
Confidence 4445578888888875 777775543323445544
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.76 E-value=7.5e-08 Score=84.75 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=40.5
Q ss_pred cccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 144 SEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 144 ~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
..+..+++|++|+++++ .++.+.. ....+++|+.|+++++ +++.+|........+|+.+
T Consensus 341 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEE
Confidence 34556788888888876 4555533 4456899999999996 5777886543334556555
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.76 E-value=8.9e-09 Score=94.06 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=60.7
Q ss_pred cCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccc
Q 026434 87 SGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLK 164 (238)
Q Consensus 87 ~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~ 164 (238)
..+++|+.|++++| +++.++ .+..+++|++|++++| .+..+++ ..+..+++|+.|+++++. ++
T Consensus 470 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~l~~N~-l~ 534 (606)
T 3vq2_A 470 ANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDS------------SHYNQLYSLSTLDCSFNR-IE 534 (606)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEG------------GGTTTCTTCCEEECTTSC-CC
T ss_pred ccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCH------------HHccCCCcCCEEECCCCc-Cc
Confidence 45677777777777 455543 3566777888877777 3433322 455678999999999885 88
Q ss_pred ccCCCCCCCC-CccEEeEcCccCC
Q 026434 165 GVYPNPLPFP-KLKKIKVRGCRHL 187 (238)
Q Consensus 165 ~i~~~~~~~~-~L~~L~i~~C~~L 187 (238)
.++.....++ +|+.|++.++|-.
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCCC
T ss_pred ccCHhHhhhcccCcEEEccCCCcc
Confidence 8877666676 5999999987654
No 41
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.75 E-value=7.6e-08 Score=76.05 Aligned_cols=131 Identities=15% Similarity=0.056 Sum_probs=90.2
Q ss_pred hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--c
Q 026434 33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--L 109 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~ 109 (238)
.++++.|++.++. +.. ....+.++++|++|+++++.++.+.... ...+++|+.|+++++ +++.++. +
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~~~~ 96 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--------FNKLTSLTYLNLSTN-QLQSLPNGVF 96 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhh--------cCCCCCcCEEECCCC-cCCccCHhHh
Confidence 3578899988874 233 2223677889999999988865442211 245788999999887 5777654 5
Q ss_pred ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCC
Q 026434 110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHL 187 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L 187 (238)
..+++|++|++.++ .+..+.. .....+++|++|++.+. .++.+... ...+++|+.|++.+++-.
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPD------------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCccCCCEEEcCCC-cCcccCH------------hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence 67899999999876 3444321 23456789999999875 46666554 345789999999886433
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.75 E-value=2.9e-08 Score=88.27 Aligned_cols=100 Identities=14% Similarity=0.012 Sum_probs=54.4
Q ss_pred ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCc
Q 026434 4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKK 83 (238)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~ 83 (238)
+..+.+|+.|++.......+..+ ...++|+.|++.++. +.. + .+..+++|++|++++|.++.+.
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l----~~l~~L~~L~Ls~n~-l~~-~-~~~~l~~L~~L~Ls~N~l~~~~--------- 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGI----EKLTGLTKLICTSNN-ITT-L-DLSQNTNLTYLACDSNKLTNLD--------- 101 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTG----GGCTTCSEEECCSSC-CSC-C-CCTTCTTCSEEECCSSCCSCCC---------
T ss_pred hhHcCCCCEEEccCCCcccChhh----cccCCCCEEEccCCc-CCe-E-ccccCCCCCEEECcCCCCceee---------
Confidence 34466666666643322222211 122567777777663 232 2 2566677777777776644331
Q ss_pred ccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434 84 LFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC 123 (238)
Q Consensus 84 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C 123 (238)
...+++|+.|+++++ +++.++ +..+++|++|++.++
T Consensus 102 --~~~l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARN 137 (457)
T ss_dssp --CTTCTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTS
T ss_pred --cCCCCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCC
Confidence 234666666666665 455543 556666666666654
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.75 E-value=1.6e-08 Score=84.69 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=100.8
Q ss_pred cccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCc
Q 026434 5 LGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKK 83 (238)
Q Consensus 5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~ 83 (238)
..+.+|+.|++.......+.. ...-.++|+.|++.++.--.. ....+.++++|+.|++++|.+..+...
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------- 144 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG------- 144 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEE---EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-------
T ss_pred ccccccCEEECCCCccccChh---hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-------
Confidence 357888888875432222211 112236889998887642111 123577889999999999884433211
Q ss_pred ccccCCCCccEEEEecCCCCCc--Cc-ccccCCCccEEEEecccccceecccccccccccccccccccccccceeecccc
Q 026434 84 LFQSGFRSLNTVHVFYCQKAKD--LT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG 160 (238)
Q Consensus 84 ~~~~~l~~L~~L~i~~C~~L~~--l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 160 (238)
....+++|+.|+++++ ++.. ++ .+..+++|++|+++++ .+..+.+ ..+..+++|++|+++++
T Consensus 145 -~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------------~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 145 -IFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP------------TAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp -TTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECTTS
T ss_pred -hcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCH------------HHhcCCCCCCEEECCCC
Confidence 2345789999999887 3443 22 4567899999999887 4444422 34556789999999876
Q ss_pred ccccccCC-CCCCCCCccEEeEcCccC
Q 026434 161 INLKGVYP-NPLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 161 ~~L~~i~~-~~~~~~~L~~L~i~~C~~ 186 (238)
. ++++.. ....+++|+.|+++++.-
T Consensus 210 ~-l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 210 N-FFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp C-CSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred c-cCccChhhccCcccCCEeECCCCCC
Confidence 3 555543 234578999999998854
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.73 E-value=3.2e-08 Score=91.48 Aligned_cols=182 Identities=15% Similarity=0.088 Sum_probs=100.7
Q ss_pred cccccCCCcceeEEeeehHH---------------HHhhhcCch--hhcceeEEEEeecCCCCCcccchhhcccCCeEEE
Q 026434 3 ELLGLKHLKVLSWSFGSSLA---------------VQKFLKYPK--LVSITQSVGVYQCRSPPFNVFHLAYMENLQELEL 65 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~---------------l~~l~~~~~--l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i 65 (238)
++.++.+|+.|++....... ...+..... -.++|+.|.+.+|.-.......+.++++|+.|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 57788899999987543222 001333333 3478999999998643322245788899999999
Q ss_pred eecC-Cce--EEecccCccCcccccCCCCccEEEEecCCCCCcCcc---cccCCCccEEEEecccccc-eeccccc----
Q 026434 66 EYCN-LEE--MKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW---LVFVQNLKKLRIEFCDDVE-EIIGVDK---- 134 (238)
Q Consensus 66 ~~c~-l~~--i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~---~~~l~~L~~L~i~~C~~l~-~l~~~~~---- 134 (238)
++|. +.. ++..... ......+++|+.|+++++ +++.++. +..+++|++|++.++. +. .+.....
T Consensus 281 s~n~~l~~~~lp~~~~~---L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L 355 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQA---LADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKL 355 (636)
T ss_dssp TTCTTSCHHHHHHHHHH---HHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEE
T ss_pred cCCCCCccccchHHHHh---hhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCC
Confidence 9987 763 3211100 000112377888888777 4666654 6677888888887763 33 2210000
Q ss_pred ------ccccccccccccccccc-cceeeccccccccccCCCC--CCCCCccEEeEcCccCCCCCC
Q 026434 135 ------LRDISEIIGSEHNFFAQ-LEYLTISWGINLKGVYPNP--LPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 135 ------~~~~~~~~~~~~~~~p~-L~~L~L~~~~~L~~i~~~~--~~~~~L~~L~i~~C~~L~~lp 191 (238)
......++ ..+..+++ |++|+++++. ++.++... ..+++|+.|+++++.--..+|
T Consensus 356 ~~L~L~~N~l~~lp-~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 356 ASLNLAYNQITEIP-ANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp SEEECCSSEEEECC-TTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred CEEECCCCcccccc-HhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcch
Confidence 00000111 23445566 7777766553 44554322 223467777777765544444
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.72 E-value=2.7e-08 Score=83.17 Aligned_cols=83 Identities=18% Similarity=0.099 Sum_probs=53.7
Q ss_pred CCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc
Q 026434 88 GFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG 165 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 165 (238)
.+++|+.|+++++ +++.++. +..+++|+.|++.++ ++..+.. .....+++|+.|++.+. .++.
T Consensus 122 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~~l~~L~~L~L~~N-~l~~ 186 (290)
T 1p9a_G 122 GLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPA------------GLLNGLENLDTLLLQEN-SLYT 186 (290)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCCC
T ss_pred CCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCH------------HHhcCcCCCCEEECCCC-cCCc
Confidence 4566666666665 4555543 345566666666654 3333321 23456889999999865 5778
Q ss_pred cCCCCCCCCCccEEeEcCcc
Q 026434 166 VYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 166 i~~~~~~~~~L~~L~i~~C~ 185 (238)
++......++|+.|.+.+.|
T Consensus 187 ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCC
T ss_pred cChhhcccccCCeEEeCCCC
Confidence 87777778899999988654
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=5.8e-08 Score=92.79 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=72.0
Q ss_pred cccccCCCcceeEEeeehHH--------------H-HhhhcCch--hhcceeEEEEeecCCCCCcccchhhcccCCeEEE
Q 026434 3 ELLGLKHLKVLSWSFGSSLA--------------V-QKFLKYPK--LVSITQSVGVYQCRSPPFNVFHLAYMENLQELEL 65 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~--------------l-~~l~~~~~--l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i 65 (238)
++.+|.+|+.|++....... + ..+..... -.++|+.|.+.+|.-.......+.++++|+.|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 57788999999987543222 0 01233222 3468999999998643332245788999999999
Q ss_pred eecC-Cce--EEecccCccCcccccCCCCccEEEEecCCCCCcCcc---cccCCCccEEEEecc
Q 026434 66 EYCN-LEE--MKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW---LVFVQNLKKLRIEFC 123 (238)
Q Consensus 66 ~~c~-l~~--i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~---~~~l~~L~~L~i~~C 123 (238)
++|. +.. ++...... ......+++|+.|+++++ ++..+|. +..+++|++|+++++
T Consensus 523 s~N~~lsg~~iP~~i~~L--~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRL--ADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp TTCTTSCHHHHHHHHHHH--HHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTS
T ss_pred cCCCCcccccchHHHHhh--hhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCC
Confidence 9997 663 32111000 001234567777777766 4556654 566777777777665
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.70 E-value=5.6e-08 Score=89.09 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=50.3
Q ss_pred CCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccc------------ccccccccccccccccccceeec
Q 026434 90 RSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDK------------LRDISEIIGSEHNFFAQLEYLTI 157 (238)
Q Consensus 90 ~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~------------~~~~~~~~~~~~~~~p~L~~L~L 157 (238)
++|+.|+++++ +++..+++..+++|++|+++++. +..+++..- .....+.+ .....+|+|+.|+|
T Consensus 232 ~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L 308 (597)
T 3oja_B 232 VELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDL 308 (597)
T ss_dssp SCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEEC
T ss_pred CCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEEC
Confidence 34555555555 45555566677777777777763 333321100 00000010 22234566666666
Q ss_pred cccccccccCCCCCCCCCccEEeEcCccCCCCCCCCC
Q 026434 158 SWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNS 194 (238)
Q Consensus 158 ~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~ 194 (238)
+++ .+..++.....+++|+.|++++|. +..+|...
T Consensus 309 s~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~ 343 (597)
T 3oja_B 309 SHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLST 343 (597)
T ss_dssp CSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT
T ss_pred CCC-CCCccCcccccCCCCCEEECCCCC-CCCcChhh
Confidence 654 344444333446777777777764 45555433
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.70 E-value=5.6e-08 Score=82.22 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=32.2
Q ss_pred ccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCC
Q 026434 145 EHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 145 ~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~ 193 (238)
.+..+++|++|+++++ .++.++.....+++|+.|++.+++ ++.+|..
T Consensus 235 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~ 281 (330)
T 1xku_A 235 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSN 281 (330)
T ss_dssp TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTT
T ss_pred hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChh
Confidence 3456677888888766 466666555667888888888774 6666644
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.69 E-value=3.6e-08 Score=85.36 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=85.5
Q ss_pred ceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc-cccCC
Q 026434 35 ITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW-LVFVQ 113 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~l~ 113 (238)
+|+.|++.++.- . ....+.++++|++|++++|.+..+.... ...+++|+.|+++++ +++.++. ...++
T Consensus 227 ~L~~L~l~~n~l-~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~~~~l~ 295 (390)
T 3o6n_A 227 ELTILKLQHNNL-T-DTAWLLNYPGLVEVDLSYNELEKIMYHP--------FVKMQRLERLYISNN-RLVALNLYGQPIP 295 (390)
T ss_dssp SCCEEECCSSCC-C-CCGGGGGCTTCSEEECCSSCCCEEESGG--------GTTCSSCCEEECCSS-CCCEEECSSSCCT
T ss_pred cccEEECCCCCC-c-ccHHHcCCCCccEEECCCCcCCCcChhH--------ccccccCCEEECCCC-cCcccCcccCCCC
Confidence 566666665532 2 2345677788888888888855553222 245888999999887 6777653 45688
Q ss_pred CccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434 114 NLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 114 ~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~ 185 (238)
+|++|++++| .+..+. ..+..+++|++|++.+++ ++.+. ...+++|+.|++.+++
T Consensus 296 ~L~~L~L~~n-~l~~~~-------------~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 296 TLKVLDLSHN-HLLHVE-------------RNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TCCEEECCSS-CCCCCG-------------GGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCEEECCCC-cceecC-------------ccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 9999999888 454442 244568999999999875 56553 4567899999998764
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.69 E-value=3e-08 Score=88.85 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=22.3
Q ss_pred cccccccceeeccccccccccCCCCCCCCCccEEeEcCccC
Q 026434 146 HNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 146 ~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~ 186 (238)
+..+++|+.|+++++ .+.+++.....+++|+.|++.+++-
T Consensus 210 ~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 210 FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 344566666666653 3555554444556666666666543
No 51
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.69 E-value=8.9e-08 Score=78.00 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=96.1
Q ss_pred hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--c
Q 026434 33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--L 109 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~ 109 (238)
.++|+.|++.++. +.. ....+.++++|+.|+++++.+..+..+. ...+++|+.|+++++ +++.++. +
T Consensus 58 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~ 127 (251)
T 3m19_A 58 LTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGV--------FDHLTQLDKLYLGGN-QLKSLPSGVF 127 (251)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred cccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhH--------hcccCCCCEEEcCCC-cCCCcChhHh
Confidence 3689999998864 333 2234688999999999999865553222 246899999999987 7888764 5
Q ss_pred ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccC
Q 026434 110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~ 186 (238)
..+++|++|++.++ .+..+.. ..+..+++|++|+|.+. .++++... ...+++|+.|++.+++-
T Consensus 128 ~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 128 DRLTKLKELRLNTN-QLQSIPA------------GAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccCCcccEEECcCC-cCCccCH------------HHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 67999999999987 5554432 24567899999999876 56666653 45679999999988653
No 52
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.68 E-value=1.3e-07 Score=76.16 Aligned_cols=127 Identities=15% Similarity=0.070 Sum_probs=74.4
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV 110 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~ 110 (238)
++++.|++.++.- .. ....+.++++|+.|+++++.+..+.... ...+++|+.|+++++ +++.++. +.
T Consensus 40 ~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~--------~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDNQI-TKLEPGVFDSLINLKELYLGSNQLGALPVGV--------FDSLTQLTVLDLGTN-QLTVLPSAVFD 109 (229)
T ss_dssp TTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCCEEEcCCCcc-CccCHHHhhCccCCcEEECCCCCCCCcChhh--------cccCCCcCEEECCCC-cCCccChhHhC
Confidence 5677777776532 22 1233566677777777777654442111 134677777777766 5666653 45
Q ss_pred cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCcc
Q 026434 111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCR 185 (238)
Q Consensus 111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~ 185 (238)
.+++|++|++.++ ++..+. ..+..+++|+.|++.+. +++.+... ...+++|+.|++.+.|
T Consensus 110 ~l~~L~~L~Ls~N-~l~~lp-------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 110 RLVHLKELFMCCN-KLTELP-------------RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCTTCCEEECCSS-CCCSCC-------------TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cchhhCeEeccCC-cccccC-------------cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 6777777777665 343331 23455677777777664 55555542 3446677777776544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.68 E-value=9.6e-08 Score=81.60 Aligned_cols=80 Identities=21% Similarity=0.189 Sum_probs=37.4
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV 110 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~ 110 (238)
++++.|++.++. +.. ....+.++++|+.|++++|.+..+..+. ...+++|+.|+++++ +++.++. +.
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 121 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDS--------FSSLGSLEHLDLSYN-YLSNLSSSWFK 121 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECCSS-CCSSCCHHHHT
T ss_pred ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhh--------cCCCCCCCEEECCCC-cCCcCCHhHhC
Confidence 356666665543 222 1123555666666666666544332111 123445555555544 3444432 33
Q ss_pred cCCCccEEEEecc
Q 026434 111 FVQNLKKLRIEFC 123 (238)
Q Consensus 111 ~l~~L~~L~i~~C 123 (238)
.+++|++|++.++
T Consensus 122 ~l~~L~~L~L~~n 134 (353)
T 2z80_A 122 PLSSLTFLNLLGN 134 (353)
T ss_dssp TCTTCSEEECTTC
T ss_pred CCccCCEEECCCC
Confidence 4455555555443
No 54
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.67 E-value=7.1e-08 Score=79.43 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=91.5
Q ss_pred hcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434 33 VSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV 112 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l 112 (238)
.++|+.|++.++. +.. ++.+..+++|+.|++++|.+..+. ....+++|+.|+++++ +++.++.+..
T Consensus 40 l~~L~~L~l~~n~-i~~-l~~l~~l~~L~~L~L~~N~i~~~~----------~l~~l~~L~~L~L~~N-~l~~l~~~~~- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSN-IQS-LAGMQFFTNLKELHLSHNQISDLS----------PLKDLTKLEELSVNRN-RLKNLNGIPS- 105 (263)
T ss_dssp HTTCSEEECTTSC-CCC-CTTGGGCTTCCEEECCSSCCCCCG----------GGTTCSSCCEEECCSS-CCSCCTTCCC-
T ss_pred cCcCcEEECcCCC-ccc-chHHhhCCCCCEEECCCCccCCCh----------hhccCCCCCEEECCCC-ccCCcCcccc-
Confidence 3678888888873 343 556788889999999988855442 1356889999999887 6777766555
Q ss_pred CCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCC
Q 026434 113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKL 190 (238)
Q Consensus 113 ~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~l 190 (238)
++|++|++.++ .+..+ ..+..+++|+.|++++. +++++. ....+++|+.|+++++. ++.+
T Consensus 106 ~~L~~L~L~~N-~l~~~--------------~~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~-i~~~ 165 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDT--------------DSLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE-ITNT 165 (263)
T ss_dssp SSCCEEECCSS-CCSBS--------------GGGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC-CCBC
T ss_pred CcccEEEccCC-ccCCC--------------hhhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc-Ccch
Confidence 89999999887 44443 24557899999999875 355553 34568999999999873 4444
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.66 E-value=2.7e-08 Score=83.95 Aligned_cols=187 Identities=13% Similarity=0.071 Sum_probs=99.4
Q ss_pred ccCCCcceeEEeeehHHHH-hhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEec--------
Q 026434 6 GLKHLKVLSWSFGSSLAVQ-KFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKID-------- 76 (238)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~-~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~-------- 76 (238)
.+.+|+.|+++......+. ..+. -.++|+.|++.++.- .. ...+..+++|++|++++|.+..+...
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l-~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLA---PFTKLELLNLSSNVL-YE-TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHT---TCTTCCEEECTTSCC-EE-EEEETTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhh---CCCcCCEEECCCCcC-Cc-chhhhhcCCCCEEECcCCccccccCCCCcCEEEC
Confidence 4457777776532221111 1111 125678888877642 21 23366777777777777654333211
Q ss_pred -ccCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccc---cc----------ccc
Q 026434 77 -STDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKL---RD----------ISE 140 (238)
Q Consensus 77 -~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~---~~----------~~~ 140 (238)
.... .......+++|+.|+++++ +++.++ .+..+++|++|+++++ .+..+....-. .. ...
T Consensus 107 ~~n~l-~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNI-SRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCC-SEEEECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCcc-CCcCccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 0000 0011234667777777766 455543 2345677777777665 33332211000 00 000
Q ss_pred ccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEEE
Q 026434 141 IIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIE 205 (238)
Q Consensus 141 ~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~ 205 (238)
. .....+++|++|+++++ ++++++.....+++|+.|+++++ +++.+|..-. ...+|+.+.
T Consensus 184 ~--~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~-~l~~L~~L~ 243 (317)
T 3o53_A 184 V--KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALR-FSQNLEHFD 243 (317)
T ss_dssp E--ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCC-CCTTCCEEE
T ss_pred c--ccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhh-cCCCCCEEE
Confidence 0 12234778888888765 46666555556789999999988 6777875432 235566553
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.66 E-value=1.2e-07 Score=86.50 Aligned_cols=140 Identities=11% Similarity=0.080 Sum_probs=63.4
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCc----
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT---- 107 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~---- 107 (238)
++|+.|++.++.- .. ....+.++++|+.|++++|. ...+... ....+++|+.|+++++ +++.+.
T Consensus 301 ~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~~~~ 370 (606)
T 3t6q_A 301 STLKKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLELGTG--------CLENLENLRELDLSHD-DIETSDCCNL 370 (606)
T ss_dssp TTCCEEECTTCCC-SBGGGGCGGGCTTCSEEECCSCSSCCBCCSS--------TTTTCTTCCEEECCSS-CCCEEEESTT
T ss_pred ccCCEEECccCCc-CcCchhhhhccCcCCEEECCCCCcccccchh--------hhhccCcCCEEECCCC-ccccccCcch
Confidence 4556666655531 11 11234555666666666555 3222111 1234566666666655 343332
Q ss_pred ccccCCCccEEEEecccccceecccc----cc--------cccccc-cccccccccccceeeccccccccccC-CCCCCC
Q 026434 108 WLVFVQNLKKLRIEFCDDVEEIIGVD----KL--------RDISEI-IGSEHNFFAQLEYLTISWGINLKGVY-PNPLPF 173 (238)
Q Consensus 108 ~~~~l~~L~~L~i~~C~~l~~l~~~~----~~--------~~~~~~-~~~~~~~~p~L~~L~L~~~~~L~~i~-~~~~~~ 173 (238)
.+..+++|++|++.++. +..+.+.. .. ....+. ....+..+++|+.|+++++. +..+. .....+
T Consensus 371 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 448 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGL 448 (606)
T ss_dssp TTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTC
T ss_pred hcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCC
Confidence 23455666666666552 22221100 00 000000 00124456666676666553 22222 223446
Q ss_pred CCccEEeEcCcc
Q 026434 174 PKLKKIKVRGCR 185 (238)
Q Consensus 174 ~~L~~L~i~~C~ 185 (238)
++|+.|++++|.
T Consensus 449 ~~L~~L~L~~n~ 460 (606)
T 3t6q_A 449 PALQHLNLQGNH 460 (606)
T ss_dssp TTCCEEECTTCB
T ss_pred CCCCEEECCCCC
Confidence 777777777764
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.65 E-value=2.3e-08 Score=83.73 Aligned_cols=156 Identities=15% Similarity=0.081 Sum_probs=102.0
Q ss_pred ccccCCCcceeEEeeehHHH----HhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccC
Q 026434 4 LLGLKHLKVLSWSFGSSLAV----QKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTD 79 (238)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l----~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~ 79 (238)
+..+.+|+.|++........ ..+.. .++|+.|++.++.- ......+..+++|++|+++++.+..+..
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~---- 118 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFG----TTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSE---- 118 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHS----CSCCCEEECCSCSE-EEEEEEEETCTTCCEEECTTSEEESSTT----
T ss_pred hhccccCCEEECCCCccCcccCccccccc----ccccCEEECCCCcc-ccChhhcCCCCCCCEEECCCCccccccc----
Confidence 56788899998753221111 12222 25899999988742 2212246778999999999887443311
Q ss_pred ccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccccccccccccccccccccceeec
Q 026434 80 EVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTI 157 (238)
Q Consensus 80 ~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L 157 (238)
......+++|+.|+++++ .+.... .+..+++|++|++.++.--...++ ..+..+++|++|++
T Consensus 119 ---~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~l~~L~~L~L 182 (306)
T 2z66_A 119 ---FSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDL 182 (306)
T ss_dssp ---TTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEEC
T ss_pred ---chhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccccch------------hHHhhCcCCCEEEC
Confidence 012356889999999988 454433 356789999999988742221211 34567899999999
Q ss_pred cccccccccCC-CCCCCCCccEEeEcCcc
Q 026434 158 SWGINLKGVYP-NPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 158 ~~~~~L~~i~~-~~~~~~~L~~L~i~~C~ 185 (238)
+++ .++++.. ....+++|+.|+++++.
T Consensus 183 s~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 183 SQC-QLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TTS-CCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCC-CcCCcCHHHhcCCCCCCEEECCCCc
Confidence 876 4666543 34567899999998874
No 58
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.65 E-value=5.4e-08 Score=91.77 Aligned_cols=120 Identities=15% Similarity=-0.004 Sum_probs=54.5
Q ss_pred cccccCCCcceeEEeeehH-HHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEec----
Q 026434 3 ELLGLKHLKVLSWSFGSSL-AVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKID---- 76 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~-~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~---- 76 (238)
.+..+.+|++|+++..... .+..... ..-.++|++|++.++.-... ....+.++++|++|++++|.+......
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGG-GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHH-HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 4566677777776532211 0111001 11124677777766532111 111124556666666665543222110
Q ss_pred -------------ccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434 77 -------------STDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC 123 (238)
Q Consensus 77 -------------~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C 123 (238)
.....+......+++|+.|++++|.--..++.+..+++|++|++.+|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 233 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC
Confidence 00000011224566666666666632222344556677777777665
No 59
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.65 E-value=2e-07 Score=79.72 Aligned_cols=55 Identities=22% Similarity=0.187 Sum_probs=38.2
Q ss_pred cccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEEE
Q 026434 146 HNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIE 205 (238)
Q Consensus 146 ~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~ 205 (238)
...+++|+.|++++. ++++++. ..|.+|+.|.+.+|.+++.+|.-.. ..+|+...
T Consensus 198 f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~--l~~L~~l~ 252 (350)
T 4ay9_X 198 FHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPTLEK--LVALMEAS 252 (350)
T ss_dssp TTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTT--CCSCCEEE
T ss_pred hccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCCchh--CcChhhCc
Confidence 355677788888765 5676654 3578899999999999999984322 24555553
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.64 E-value=6e-08 Score=82.88 Aligned_cols=141 Identities=13% Similarity=0.066 Sum_probs=70.3
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc---c
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW---L 109 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~---~ 109 (238)
++|+.|++.++. +.. ....+.++++|++|++++|.++.+..+. ...+++|+.|+++++ +++.++. +
T Consensus 76 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~l~~~~~~ 145 (353)
T 2z80_A 76 VNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW--------FKPLSSLTFLNLLGN-PYKTLGETSLF 145 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCCHHH--------HTTCTTCSEEECTTC-CCSSSCSSCSC
T ss_pred CCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCCHhH--------hCCCccCCEEECCCC-CCcccCchhhh
Confidence 567777776652 232 2234566777777777777644332111 124556666666655 4555443 3
Q ss_pred ccCCCccEEEEecccccceecccccc------------cccccccccccccccccceeeccccccccccCCC-CCCCCCc
Q 026434 110 VFVQNLKKLRIEFCDDVEEIIGVDKL------------RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKL 176 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l~~~~~~------------~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L 176 (238)
..+++|++|++.++..+..+....-. ....+.....+..+++|++|++.+.. ++.++.. ...+++|
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSV 224 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTE
T ss_pred ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccc
Confidence 45666666666665444443211000 00000000234455666666665543 2332211 1136778
Q ss_pred cEEeEcCcc
Q 026434 177 KKIKVRGCR 185 (238)
Q Consensus 177 ~~L~i~~C~ 185 (238)
+.|+++++.
T Consensus 225 ~~L~L~~n~ 233 (353)
T 2z80_A 225 ECLELRDTD 233 (353)
T ss_dssp EEEEEESCB
T ss_pred cEEECCCCc
Confidence 888887763
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.64 E-value=1.6e-08 Score=91.46 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=99.6
Q ss_pred ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-c--ccchhhcccCCeEEEeecCCceEEecccC---
Q 026434 6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-N--VFHLAYMENLQELELEYCNLEEMKIDSTD--- 79 (238)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~--~~~l~~l~~L~~L~i~~c~l~~i~~~~~~--- 79 (238)
.+.+|+.|++...... ..... ...++|+.|++.++.- .. . ...+..+++|+.|++++|.+..+......
T Consensus 323 ~l~~L~~L~l~~n~~~---~~~~~-~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~ 397 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGG---NAFSE-VDLPSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397 (570)
T ss_dssp BCSSCCEEEEESCBSC---CBCCC-CBCTTCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred cccccCEEeCcCCccc---ccccc-ccCCCCCEEeCcCCcc-CccccccccccccCccCEEECCCCccccccccccccCC
Confidence 4667777777533211 11111 2235788888877642 21 1 12456677888888877763333221000
Q ss_pred ----------ccC---cccccCCCCccEEEEecCCCCCcC-c-ccccCCCccEEEEecccccceeccccccccccccccc
Q 026434 80 ----------EVK---KLFQSGFRSLNTVHVFYCQKAKDL-T-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGS 144 (238)
Q Consensus 80 ----------~~~---~~~~~~l~~L~~L~i~~C~~L~~l-~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~ 144 (238)
... ......+++|+.|++++|. +... + .+..+++|++|++.+|.-....++ .
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------------~ 464 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------D 464 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEEC------------S
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccch------------h
Confidence 000 0123345666666666663 3332 1 245567777777776642211111 3
Q ss_pred ccccccccceeeccccccccccC-CCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 145 EHNFFAQLEYLTISWGINLKGVY-PNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 145 ~~~~~p~L~~L~L~~~~~L~~i~-~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
.+..+++|+.|+++++ .++++. .....+++|+.|++++| +++.+|...-....+|+.+
T Consensus 465 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 465 IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred hhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEE
Confidence 4567889999999887 455553 34456899999999998 6777775543333556655
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.62 E-value=7.1e-08 Score=81.20 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=59.2
Q ss_pred ccCCCcceeEEeeehHH-HHh-hhcCchhhcceeEEEEeecCCCCCcccchhhc-----ccCCeEEEeecCCceEEeccc
Q 026434 6 GLKHLKVLSWSFGSSLA-VQK-FLKYPKLVSITQSVGVYQCRSPPFNVFHLAYM-----ENLQELELEYCNLEEMKIDST 78 (238)
Q Consensus 6 ~L~~L~~L~i~~~~~~~-l~~-l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l-----~~L~~L~i~~c~l~~i~~~~~ 78 (238)
.+.+|+.|++....... +.. ++ ..-.++|+.|++.++.- ......+..+ ++|++|++++|.+..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~--~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-- 167 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL--EATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-- 167 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS--SCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT--
T ss_pred CcCCccEEEccCCcccchhHHHHH--HhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH--
Confidence 57888888887544221 111 11 02236788888887642 2211234444 7888888888875444221
Q ss_pred CccCcccccCCCCccEEEEecCCCCCcC---ccc--ccCCCccEEEEecc
Q 026434 79 DEVKKLFQSGFRSLNTVHVFYCQKAKDL---TWL--VFVQNLKKLRIEFC 123 (238)
Q Consensus 79 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l---~~~--~~l~~L~~L~i~~C 123 (238)
....+++|+.|+++++.-.... +.+ ..+++|++|++.++
T Consensus 168 ------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 168 ------QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp ------TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred ------HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 1234667777777766322111 111 45667777777665
No 63
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=2e-08 Score=77.87 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=42.3
Q ss_pred ceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCccCcccccC----CCCccEEEEecCCCCCc--C
Q 026434 35 ITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSG----FRSLNTVHVFYCQKAKD--L 106 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~----l~~L~~L~i~~C~~L~~--l 106 (238)
.|+.|++++|. +.. .+..+..+++|++|++++|. +++-.+... .. .++|++|+|++|+++++ +
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L--------~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL--------SQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH--------HTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH--------HhcccccCCCCEEEcCCCCcCCHHHH
Confidence 45666666664 333 34445555666666666665 443211110 11 12456666666655555 2
Q ss_pred cccccCCCccEEEEecccccc
Q 026434 107 TWLVFVQNLKKLRIEFCDDVE 127 (238)
Q Consensus 107 ~~~~~l~~L~~L~i~~C~~l~ 127 (238)
..+..+++|++|++++|+++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCC
T ss_pred HHHhcCCCCCEEECCCCCCCC
Confidence 233455666666666665544
No 64
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.61 E-value=3.4e-07 Score=73.69 Aligned_cols=123 Identities=12% Similarity=0.086 Sum_probs=92.3
Q ss_pred ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434 58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL 135 (238)
Q Consensus 58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~ 135 (238)
++|+.|+++++.+..+... ....+++|+.|+++++ +++.++. +..+++|++|+++++ ++..+..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~--------~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~---- 105 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPG--------VFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS---- 105 (229)
T ss_dssp TTCSEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred CCCCEEEcCCCccCccCHH--------HhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccCh----
Confidence 7999999999985544222 2346899999999987 5777764 568999999999987 5555432
Q ss_pred cccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
.....+++|+.|++.+. +++.++.....+++|+.|+++++ +++.+|........+|+.+
T Consensus 106 --------~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 106 --------AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp --------TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred --------hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 23457899999999875 57778766778899999999987 7788886544334566655
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.61 E-value=7.6e-08 Score=86.74 Aligned_cols=157 Identities=19% Similarity=0.128 Sum_probs=101.5
Q ss_pred cccCCCcceeEEeeehHH-HHhhhcCchhhcceeEEEEeecCCCCC-cc--cchhhcccCCeEEEeecCCceEEecccCc
Q 026434 5 LGLKHLKVLSWSFGSSLA-VQKFLKYPKLVSITQSVGVYQCRSPPF-NV--FHLAYMENLQELELEYCNLEEMKIDSTDE 80 (238)
Q Consensus 5 ~~L~~L~~L~i~~~~~~~-l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~--~~l~~l~~L~~L~i~~c~l~~i~~~~~~~ 80 (238)
..+.+|+.|++....... ...........++|+.|++.++. +.. .. ..+..+++|+.|++++|.++.++.
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----- 404 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMPD----- 404 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-----
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCCh-----
Confidence 468899999986433221 11111112223689999999874 332 11 236788999999999998655521
Q ss_pred cCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeecccc
Q 026434 81 VKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG 160 (238)
Q Consensus 81 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 160 (238)
....+++|+.|+++++ +++.++. ..+++|++|++++| ++..++ ..+++|++|+++++
T Consensus 405 ----~~~~~~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~Ls~N-~l~~~~----------------~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 405 ----SCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNN-NLDSFS----------------LFLPRLQELYISRN 461 (549)
T ss_dssp ----CCCCCTTCCEEECTTS-CCSCCCT-TSCTTCSEEECCSS-CCSCCC----------------CCCTTCCEEECCSS
T ss_pred ----hhcccccccEEECCCC-Ccccccc-hhcCCceEEECCCC-Chhhhc----------------ccCChhcEEECCCC
Confidence 2345788999999888 4766543 22468888888887 333321 24678888888776
Q ss_pred ccccccCCCCCCCCCccEEeEcCccCCCCCCCC
Q 026434 161 INLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 161 ~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~ 193 (238)
+++.++. ...+++|+.|+++++ +++.+|..
T Consensus 462 -~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~ 491 (549)
T 2z81_A 462 -KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDG 491 (549)
T ss_dssp -CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred -ccCcCCC-cccCccCCEEecCCC-ccCCcCHH
Confidence 5666654 345788888888877 56666644
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.60 E-value=2.3e-07 Score=83.18 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=83.9
Q ss_pred ceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc----ccc
Q 026434 35 ITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT----WLV 110 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~----~~~ 110 (238)
+++.|.+.++.- .. ......+++|++|++++|.+.... +.....+++|+.|+++++ +++.++ .+.
T Consensus 303 ~L~~L~l~~n~l-~~-~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~ 371 (520)
T 2z7x_B 303 NIKNFTVSGTRM-VH-MLCPSKISPFLHLDFSNNLLTDTV--------FENCGHLTELETLILQMN-QLKELSKIAEMTT 371 (520)
T ss_dssp CCSEEEEESSCC-CC-CCCCSSCCCCCEEECCSSCCCTTT--------TTTCCCCSSCCEEECCSS-CCCBHHHHHHHHT
T ss_pred ceeEEEcCCCcc-cc-ccchhhCCcccEEEeECCccChhh--------hhhhccCCCCCEEEccCC-ccCccccchHHHh
Confidence 466666666542 11 111245677777777777633211 112234666677776666 455432 245
Q ss_pred cCCCccEEEEecccccce-ecccc-cc-cccc-------cccccccccc-cccceeeccccccccccCCCCCCCCCccEE
Q 026434 111 FVQNLKKLRIEFCDDVEE-IIGVD-KL-RDIS-------EIIGSEHNFF-AQLEYLTISWGINLKGVYPNPLPFPKLKKI 179 (238)
Q Consensus 111 ~l~~L~~L~i~~C~~l~~-l~~~~-~~-~~~~-------~~~~~~~~~~-p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L 179 (238)
.+++|++|+++++. +.. +.... .. .... .........+ ++|+.|+++++ +++.++.....+++|+.|
T Consensus 372 ~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 372 QMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQEL 449 (520)
T ss_dssp TCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEE
T ss_pred hCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEE
Confidence 66666666666653 222 21100 00 0000 0000111122 68899998877 577777656688999999
Q ss_pred eEcCccCCCCCCCCCCCCCCcceEE
Q 026434 180 KVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 180 ~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
++++| +++.+|...-....+|+.+
T Consensus 450 ~L~~N-~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 450 NVASN-QLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred ECCCC-cCCccCHHHhccCCcccEE
Confidence 99998 6788887633223455544
No 67
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.59 E-value=3.7e-08 Score=73.67 Aligned_cols=124 Identities=13% Similarity=0.067 Sum_probs=83.5
Q ss_pred cceeEEEEeecCCCC-Cccc-chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCc-Ccc-c
Q 026434 34 SITQSVGVYQCRSPP-FNVF-HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD-LTW-L 109 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~-~~~~-~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~~-~ 109 (238)
++++.|++.+|.- . ..++ .+..+++|+.|++++|.+..+ . ....+++|+.|+++++ +++. ++. .
T Consensus 17 ~~l~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~n-~i~~~~~~~~ 84 (149)
T 2je0_A 17 SDVKELVLDNSRS-NEGKLEGLTDEFEELEFLSTINVGLTSI--A--------NLPKLNKLKKLELSDN-RVSGGLEVLA 84 (149)
T ss_dssp GGCSEEECTTCBC-BTTBCCSCCTTCTTCCEEECTTSCCCCC--T--------TCCCCTTCCEEECCSS-CCCSCTHHHH
T ss_pred ccCeEEEccCCcC-ChhHHHHHHhhcCCCcEEECcCCCCCCc--h--------hhhcCCCCCEEECCCC-cccchHHHHh
Confidence 6789999988853 3 1233 357788999999998885544 1 2346889999999887 4666 553 3
Q ss_pred ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC----CCCCCCCccEEeEc
Q 026434 110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP----NPLPFPKLKKIKVR 182 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~----~~~~~~~L~~L~i~ 182 (238)
..+++|++|+++++. +..+... ..+..+++|++|+++++ .+++++. ....+++|+.|+++
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTI-----------EPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHH-----------GGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCCCc-CCChHHH-----------HHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 458999999998874 4332100 24456888999999876 4565543 23457788887764
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.59 E-value=1.1e-07 Score=79.98 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=22.4
Q ss_pred cccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCC
Q 026434 150 AQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPL 192 (238)
Q Consensus 150 p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~ 192 (238)
++|++|+++++ .++.++... +++|+.|+++++ +++.+|.
T Consensus 251 ~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~ 289 (310)
T 4glp_A 251 SALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSN-RLNRAPQ 289 (310)
T ss_dssp TTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSC-CCCSCCC
T ss_pred CcCCEEECCCC-CCCchhhhh--cCCCCEEECCCC-cCCCCch
Confidence 57777777654 355554322 367777777666 3455544
No 69
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.58 E-value=4e-07 Score=72.86 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=74.4
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV 110 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~ 110 (238)
..++.|++.+.. +.. ....+..+++|+.|+++++.+..+..+ ....+++|+.|+++++ +++.++. +.
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPD--------AFQGLRSLNSLVLYGN-KITELPKSLFE 101 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTT--------TTTTCSSCCEEECCSS-CCCCCCTTTTT
T ss_pred cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHH--------HhhCCcCCCEEECCCC-cCCccCHhHcc
Confidence 467777776653 222 222456677777777777775544222 1235677777777766 5666653 35
Q ss_pred cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCc
Q 026434 111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGC 184 (238)
Q Consensus 111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C 184 (238)
.+++|++|++.++ .+..+.+ ..+..+++|+.|+|.+. .++.+... ...+++|+.|++.+.
T Consensus 102 ~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 102 GLFSLQLLLLNAN-KINCLRV------------DAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-CCCEeCH------------HHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 6777777777765 3333321 23445677777777654 35555442 334666777766553
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.58 E-value=1.3e-07 Score=80.05 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=53.2
Q ss_pred CCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccC
Q 026434 90 RSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVY 167 (238)
Q Consensus 90 ~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~ 167 (238)
++|+.|+++++ +++.++ .+..+++|++|++.++ .+..+.. ..+..+++|++|++.++ .++.++
T Consensus 193 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~lp 257 (332)
T 2ft3_A 193 ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN------------GSLSFLPTLRELHLDNN-KLSRVP 257 (332)
T ss_dssp SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCT------------TGGGGCTTCCEEECCSS-CCCBCC
T ss_pred CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCCh------------hHhhCCCCCCEEECCCC-cCeecC
Confidence 34555555444 333332 2345555666655554 2222211 24556788999988876 566777
Q ss_pred CCCCCCCCccEEeEcCccCCCCCCCC
Q 026434 168 PNPLPFPKLKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 168 ~~~~~~~~L~~L~i~~C~~L~~lp~~ 193 (238)
.....+++|+.|+++++ +++.+|..
T Consensus 258 ~~l~~l~~L~~L~l~~N-~l~~~~~~ 282 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTN-NITKVGVN 282 (332)
T ss_dssp TTGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred hhhhcCccCCEEECCCC-CCCccChh
Confidence 66667889999999887 46777654
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.58 E-value=4.4e-07 Score=76.64 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=97.5
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV 112 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l 112 (238)
++|+.|++.++. +.. ....+.++++|+.|+++++.+...... ......+++|+.|+++++ +++.++. ...
T Consensus 121 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~~l~~L~~L~l~~n-~l~~l~~-~~~ 191 (330)
T 1xku_A 121 KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIE------NGAFQGMKKLSYIRIADT-NITTIPQ-GLP 191 (330)
T ss_dssp TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBC------TTGGGGCTTCCEEECCSS-CCCSCCS-SCC
T ss_pred ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcC------hhhccCCCCcCEEECCCC-ccccCCc-ccc
Confidence 689999998874 232 223467889999999999884321110 112346889999999887 5777653 234
Q ss_pred CCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCC
Q 026434 113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 113 ~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp 191 (238)
++|++|++.++. +..+.. ..+..+++|++|+++++. ++.+.. ....+++|+.|++++| +++.+|
T Consensus 192 ~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp 256 (330)
T 1xku_A 192 PSLTELHLDGNK-ITKVDA------------ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVP 256 (330)
T ss_dssp TTCSEEECTTSC-CCEECT------------GGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCC
T ss_pred ccCCEEECCCCc-CCccCH------------HHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCC
Confidence 889999998873 444421 345567899999998763 555544 3456789999999988 567787
Q ss_pred CCCCCCCCcceEEE
Q 026434 192 LNSSSAKERRVVIE 205 (238)
Q Consensus 192 ~~~~~~~~~L~~~~ 205 (238)
..-.. ...|+.+.
T Consensus 257 ~~l~~-l~~L~~L~ 269 (330)
T 1xku_A 257 GGLAD-HKYIQVVY 269 (330)
T ss_dssp TTTTT-CSSCCEEE
T ss_pred hhhcc-CCCcCEEE
Confidence 65322 24555553
No 72
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.57 E-value=1.1e-07 Score=73.31 Aligned_cols=126 Identities=12% Similarity=0.126 Sum_probs=82.5
Q ss_pred cceeEEEEeecCCCCCcccchhhcc-cCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYME-NLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV 110 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~-~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~ 110 (238)
.+++.|.+.++. +.. ++.+..+. +|+.|++++|.++.+ . ....+++|+.|+++++ +++.++. +.
T Consensus 19 ~~L~~L~l~~n~-l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~--------~l~~l~~L~~L~Ls~N-~l~~~~~~~~~ 85 (176)
T 1a9n_A 19 VRDRELDLRGYK-IPV-IENLGATLDQFDAIDFSDNEIRKL--D--------GFPLLRRLKTLLVNNN-RICRIGEGLDQ 85 (176)
T ss_dssp TSCEEEECTTSC-CCS-CCCGGGGTTCCSEEECCSSCCCEE--C--------CCCCCSSCCEEECCSS-CCCEECSCHHH
T ss_pred CCceEEEeeCCC-Cch-hHHhhhcCCCCCEEECCCCCCCcc--c--------ccccCCCCCEEECCCC-cccccCcchhh
Confidence 578888888873 332 45555555 899999998886655 1 1245788999999887 5777653 36
Q ss_pred cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC----CCCCCCccEEeEcCcc
Q 026434 111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN----PLPFPKLKKIKVRGCR 185 (238)
Q Consensus 111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~----~~~~~~L~~L~i~~C~ 185 (238)
.+++|++|+++++ .+..+... ..+..+++|+.|++.+.+ +..++.. ...+|+|+.|++.+++
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~-----------~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDL-----------DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGG-----------GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCC-cCCcchhh-----------HhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 7889999998887 34433110 244567888888888764 3444332 3346677777665543
No 73
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.56 E-value=4.9e-07 Score=72.34 Aligned_cols=128 Identities=9% Similarity=0.095 Sum_probs=79.1
Q ss_pred cceeEEEEeecCCCCC-c-ccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--c
Q 026434 34 SITQSVGVYQCRSPPF-N-VFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--L 109 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~-~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~ 109 (238)
..++.|++.+.. +.. . ...+.++++|+.|+++++.++.+... ....+++|+.|+++++ +++.++. +
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~--------~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 101 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEG--------AFEGASGVNEILLTSN-RLENVQHKMF 101 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSS-CCCCCCGGGG
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHH--------HhCCCCCCCEEECCCC-ccCccCHhHh
Confidence 456777777653 232 1 12256778888888887776555321 1245778888888776 5666653 5
Q ss_pred ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCcc
Q 026434 110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~ 185 (238)
..+++|++|+++++ .+..+.+ ..+..+++|+.|+|.+. .++.+.. ....+++|+.|++.+.+
T Consensus 102 ~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 102 KGLESLKTLMLRSN-RITCVGN------------DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSSCCEEECTTS-CCCCBCT------------TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCCcCCCEEECCCC-cCCeECH------------hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 67788888888776 3333321 34456778888888764 4555533 33456777777776543
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.56 E-value=1.1e-07 Score=87.11 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=87.9
Q ss_pred cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc-cccC
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW-LVFV 112 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~l 112 (238)
.+|+.|++.++.- . ....+..+++|+.|++++|.+..+... ....+++|+.|+++++ +++.++. ...+
T Consensus 232 ~~L~~L~L~~n~l-~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l 300 (597)
T 3oja_B 232 VELTILKLQHNNL-T-DTAWLLNYPGLVEVDLSYNELEKIMYH--------PFVKMQRLERLYISNN-RLVALNLYGQPI 300 (597)
T ss_dssp SCCCEEECCSSCC-C-CCGGGGGCTTCSEEECCSSCCCEEESG--------GGTTCSSCCEEECTTS-CCCEEECSSSCC
T ss_pred CCCCEEECCCCCC-C-CChhhccCCCCCEEECCCCccCCCCHH--------HhcCccCCCEEECCCC-CCCCCCcccccC
Confidence 3566676666532 2 235577888899999988885555322 2346889999999887 6777653 3568
Q ss_pred CCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434 113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 113 ~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~ 185 (238)
|+|++|++++|. +..++ ..+..+++|+.|+++++. +..++ ...+++|+.|++.+++
T Consensus 301 ~~L~~L~Ls~N~-l~~i~-------------~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 301 PTLKVLDLSHNH-LLHVE-------------RNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TTCCEEECCSSC-CCCCG-------------GGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCcEEECCCCC-CCccC-------------cccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 999999998873 44332 344678999999999864 55553 4568999999998875
No 75
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.55 E-value=6e-07 Score=79.75 Aligned_cols=141 Identities=12% Similarity=0.101 Sum_probs=94.1
Q ss_pred hcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434 33 VSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV 112 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l 112 (238)
.++|+.|++.++. +.. ++.+..+++|++|++++|.++.+. ...+++|+.|+++++ +++.++ +..+
T Consensus 41 l~~L~~L~Ls~n~-l~~-~~~l~~l~~L~~L~Ls~n~l~~~~-----------~~~l~~L~~L~Ls~N-~l~~~~-~~~l 105 (457)
T 3bz5_A 41 LATLTSLDCHNSS-ITD-MTGIEKLTGLTKLICTSNNITTLD-----------LSQNTNLTYLACDSN-KLTNLD-VTPL 105 (457)
T ss_dssp HTTCCEEECCSSC-CCC-CTTGGGCTTCSEEECCSSCCSCCC-----------CTTCTTCSEEECCSS-CCSCCC-CTTC
T ss_pred cCCCCEEEccCCC-ccc-ChhhcccCCCCEEEccCCcCCeEc-----------cccCCCCCEEECcCC-CCceee-cCCC
Confidence 4688999998873 333 457888999999999999865542 246899999999998 588775 7889
Q ss_pred CCccEEEEecccccceeccccccccc-------ccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434 113 QNLKKLRIEFCDDVEEIIGVDKLRDI-------SEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 113 ~~L~~L~i~~C~~l~~l~~~~~~~~~-------~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~ 185 (238)
++|++|++.++ .++.+. ....... .......+..+++|++|++.++..+..+ ....+++|+.|+++++
T Consensus 106 ~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n- 180 (457)
T 3bz5_A 106 TKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN- 180 (457)
T ss_dssp TTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-
T ss_pred CcCCEEECCCC-cCCeec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-
Confidence 99999999987 444431 1000000 0000023455667777777766655555 2345678888888776
Q ss_pred CCCCCCCC
Q 026434 186 HLKKLPLN 193 (238)
Q Consensus 186 ~L~~lp~~ 193 (238)
+++.+|..
T Consensus 181 ~l~~l~l~ 188 (457)
T 3bz5_A 181 KITELDVS 188 (457)
T ss_dssp CCCCCCCT
T ss_pred ccceeccc
Confidence 46666633
No 76
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.55 E-value=2.9e-07 Score=77.50 Aligned_cols=103 Identities=10% Similarity=-0.064 Sum_probs=50.4
Q ss_pred cCCCCccEEEEecCCCCC-cCc-ccccCC-CccEEEEecccccceecccc-ccc----------cccccccccccccccc
Q 026434 87 SGFRSLNTVHVFYCQKAK-DLT-WLVFVQ-NLKKLRIEFCDDVEEIIGVD-KLR----------DISEIIGSEHNFFAQL 152 (238)
Q Consensus 87 ~~l~~L~~L~i~~C~~L~-~l~-~~~~l~-~L~~L~i~~C~~l~~l~~~~-~~~----------~~~~~~~~~~~~~p~L 152 (238)
..+++|+.|+++++ +++ .++ .+..++ +|++|++.++. +...++.. ... ...+.....+..+++|
T Consensus 146 ~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 146 SSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCC
T ss_pred hcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCC
Confidence 45667777777665 343 232 344555 67777776653 22111100 000 0000111334456677
Q ss_pred ceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCC
Q 026434 153 EYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPL 192 (238)
Q Consensus 153 ~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~ 192 (238)
+.|++.++. +.........+++|+.|+++++.--..+|.
T Consensus 224 ~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 224 QKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp SEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred CEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCCh
Confidence 777776543 222211234567888888887754335553
No 77
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.55 E-value=3.8e-07 Score=80.22 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=75.5
Q ss_pred hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecc
Q 026434 54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIG 131 (238)
Q Consensus 54 l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~ 131 (238)
+.++++|+.|++++|.+..+.. .....+++|+.|+++++ +++.+. .+..+++|++|+++++ .+..+.+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 364 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDD--------NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGD 364 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECT
T ss_pred cccCCCCCEEECCCCcccccCh--------hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccCh
Confidence 4455666666666665433321 12245677888888777 455553 3456788888888776 3443321
Q ss_pred cccccccccccccccccccccceeeccccccccccCCCC-CCCCCccEEeEcCccCCCCCC
Q 026434 132 VDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~~C~~L~~lp 191 (238)
..+..+++|++|++.++ ++++++... ..+++|+.|++++++---..|
T Consensus 365 ------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 365 ------------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ------------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 45567899999999985 577776643 568999999999887554444
No 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.54 E-value=2.4e-07 Score=84.56 Aligned_cols=176 Identities=15% Similarity=0.107 Sum_probs=92.0
Q ss_pred ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccC
Q 026434 4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVK 82 (238)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~ 82 (238)
+..+.+|+.|++.......+. .....-.++|+.|.+.++.-... ....+.++++|+.|++++|.+..+....
T Consensus 297 l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----- 369 (606)
T 3t6q_A 297 LVGLSTLKKLVLSANKFENLC--QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN----- 369 (606)
T ss_dssp CCSCTTCCEEECTTCCCSBGG--GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST-----
T ss_pred hcccccCCEEECccCCcCcCc--hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc-----
Confidence 445566666665422211110 11122236889999988854322 2234678889999999988855443110
Q ss_pred cccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccc-----c--------ccccccccccccc
Q 026434 83 KLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVD-----K--------LRDISEIIGSEHN 147 (238)
Q Consensus 83 ~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~-----~--------~~~~~~~~~~~~~ 147 (238)
.....+++|+.|+++++ ++..+. .+..+++|++|++.++.- ....... . .....+.....+.
T Consensus 370 -~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 370 -LQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRL-KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp -TTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCE-ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred -hhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcC-CCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 11234556666666555 233321 233455555555555421 1110000 0 0000001113456
Q ss_pred cccccceeeccccccccc--cC--CCCCCCCCccEEeEcCccCCCCCC
Q 026434 148 FFAQLEYLTISWGINLKG--VY--PNPLPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 148 ~~p~L~~L~L~~~~~L~~--i~--~~~~~~~~L~~L~i~~C~~L~~lp 191 (238)
.+++|++|++.++. +.+ +. .....+++|+.|++++| +++.++
T Consensus 447 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 492 (606)
T 3t6q_A 447 GLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID 492 (606)
T ss_dssp TCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEEC
T ss_pred CCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCccC
Confidence 78999999999875 222 11 12456899999999998 345544
No 79
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.54 E-value=1.5e-07 Score=79.29 Aligned_cols=147 Identities=14% Similarity=0.026 Sum_probs=82.9
Q ss_pred hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCC-cCc-cc
Q 026434 33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAK-DLT-WL 109 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~-~l~-~~ 109 (238)
.++|+.|++.++..+.. ....+.++++|++|++++|.+..... .....+++|+.|+++++ ++. .++ .+
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N-~l~~~~p~~~ 145 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP--------DFLSQIKTLVTLDFSYN-ALSGTLPPSI 145 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC--------GGGGGCTTCCEEECCSS-EEESCCCGGG
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC--------HHHhCCCCCCEEeCCCC-ccCCcCChHH
Confidence 36788888887555443 23357788888899888888442211 12346889999999887 344 333 46
Q ss_pred ccCCCccEEEEecccccceecccc-ccc--c----------cccccccccccccccceeeccccccccccC-CCCCCCCC
Q 026434 110 VFVQNLKKLRIEFCDDVEEIIGVD-KLR--D----------ISEIIGSEHNFFAQLEYLTISWGINLKGVY-PNPLPFPK 175 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l~~~~-~~~--~----------~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~-~~~~~~~~ 175 (238)
..+++|++|++.++. +...++.. ... . ..+.....+..++ |+.|+++++. ++... .....+++
T Consensus 146 ~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 146 SSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKN 222 (313)
T ss_dssp GGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSC
T ss_pred hcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCC
Confidence 788999999998874 33221110 000 0 0000002222333 6666665542 22221 12345778
Q ss_pred ccEEeEcCccCCCCCC
Q 026434 176 LKKIKVRGCRHLKKLP 191 (238)
Q Consensus 176 L~~L~i~~C~~L~~lp 191 (238)
|+.|++.++.--..+|
T Consensus 223 L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLG 238 (313)
T ss_dssp CSEEECCSSEECCBGG
T ss_pred CCEEECCCCceeeecC
Confidence 8888888775433333
No 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.52 E-value=3.9e-07 Score=78.31 Aligned_cols=135 Identities=19% Similarity=0.129 Sum_probs=94.7
Q ss_pred hcceeEEEEeecCCCCC-cccchh-hcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--
Q 026434 33 VSITQSVGVYQCRSPPF-NVFHLA-YMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW-- 108 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~-~~~~l~-~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-- 108 (238)
...++.|++.+.. +.. ....+. ++++|+.|+++++.+..+..+. ...+++|+.|+++++ +++.++.
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~--------~~~l~~L~~L~Ls~N-~l~~~~~~~ 107 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--------FVPVPNLRYLDLSSN-HLHTLDEFL 107 (361)
T ss_dssp CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTT--------TTTCTTCCEEECCSS-CCCEECTTT
T ss_pred CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhh--------ccCCCCCCEEECCCC-cCCcCCHHH
Confidence 3568888888763 333 222344 7889999999988866664222 346889999999987 5777654
Q ss_pred cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCC----CCCCCccEEeEcCc
Q 026434 109 LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP----LPFPKLKKIKVRGC 184 (238)
Q Consensus 109 ~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~----~~~~~L~~L~i~~C 184 (238)
+..+++|++|++.++ .+..+.+ ..+..+++|+.|+|.+. .++.++... ..+++|+.|++++.
T Consensus 108 ~~~l~~L~~L~L~~N-~i~~~~~------------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 108 FSDLQALEVLLLYNN-HIVVVDR------------NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp TTTCTTCCEEECCSS-CCCEECT------------TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred hCCCcCCCEEECCCC-cccEECH------------HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 567899999999887 3444421 34567899999999875 566665432 45899999999986
Q ss_pred cCCCCCCC
Q 026434 185 RHLKKLPL 192 (238)
Q Consensus 185 ~~L~~lp~ 192 (238)
+++.+|.
T Consensus 174 -~l~~l~~ 180 (361)
T 2xot_A 174 -KLKKLPL 180 (361)
T ss_dssp -CCCCCCH
T ss_pred -CCCccCH
Confidence 5677773
No 81
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.52 E-value=1.1e-06 Score=69.27 Aligned_cols=124 Identities=16% Similarity=0.131 Sum_probs=89.7
Q ss_pred cccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceeccccc
Q 026434 57 MENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDK 134 (238)
Q Consensus 57 l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~ 134 (238)
.++|++|+++++.++.+..+. ...+++|+.|+++++ +++.++. +..+++|++|++.++ .+..+..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--- 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGV--------FDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPN--- 93 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTT--------TTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---
T ss_pred CCCCcEEEcCCCccCcCChhh--------hcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCH---
Confidence 468999999999865443221 246899999999987 6887764 568899999999987 4444421
Q ss_pred ccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 135 LRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 135 ~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
..+..+++|++|++++. .++++... ...+++|+.|+++++ +++.+|........+|+.+
T Consensus 94 ---------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 94 ---------GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp ---------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred ---------hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEE
Confidence 23467899999999876 56776654 356899999999997 5777776543333566655
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.51 E-value=2.2e-07 Score=84.60 Aligned_cols=128 Identities=12% Similarity=0.133 Sum_probs=85.3
Q ss_pred hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--c
Q 026434 33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--L 109 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~ 109 (238)
..++++|++++- .++. ....+.++++|++|++++|.++.+..+. ...+++|+.|+++++ +++.++. +
T Consensus 51 p~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~--------f~~L~~L~~L~Ls~N-~l~~l~~~~f 120 (635)
T 4g8a_A 51 PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--------YQSLSHLSTLILTGN-PIQSLALGAF 120 (635)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT--------TTTCTTCCEEECTTC-CCCEECGGGG
T ss_pred CcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH--------hcCCCCCCEEEccCC-cCCCCCHHHh
Confidence 357888888764 3343 2235778888888888888866663222 245788888888887 5777753 5
Q ss_pred ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC--CCCCCCCccEEeEcCc
Q 026434 110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGC 184 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C 184 (238)
..+++|++|++.++ +++.+.. ..+..+++|++|++.+. .++++.. ....+++|++|++.++
T Consensus 121 ~~L~~L~~L~Ls~N-~l~~l~~------------~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 121 SGLSSLQKLVAVET-NLASLEN------------FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTCTTCCEEECTTS-CCCCSTT------------CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCC-cCCCCCh------------hhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc
Confidence 67888888888887 4444421 34566788888888765 2333322 2345788888888776
No 83
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.51 E-value=4.6e-07 Score=81.62 Aligned_cols=129 Identities=15% Similarity=0.096 Sum_probs=63.7
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV 110 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~ 110 (238)
++++.|++.++. +.. ....+.++++|++|++++|.+..+..+. ...+++|+.|+++++ +++.++. +.
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDA--------FYSLGSLEHLDLSDN-HLSSLSSSWFG 95 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECTTS-CCCSCCHHHHT
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhh--------ccccccCCEEECCCC-ccCccCHHHhc
Confidence 466777776664 222 2234566677777777766644442111 234566666666665 4555442 45
Q ss_pred cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCc
Q 026434 111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGC 184 (238)
Q Consensus 111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C 184 (238)
.+++|++|+++++. +..+... ..+..+++|++|++.++..+..++. ....+++|+.|++.++
T Consensus 96 ~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 96 PLSSLKYLNLMGNP-YQTLGVT-----------SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp TCTTCCEEECTTCC-CSSSCSS-----------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred cCCCCcEEECCCCc-ccccchh-----------hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 56666666666552 2211000 1233445555555555444444432 2233455555555544
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.50 E-value=9.6e-08 Score=88.41 Aligned_cols=164 Identities=17% Similarity=0.158 Sum_probs=100.0
Q ss_pred cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCC--CCcccchhhcccCCeEEEeecCCceEEecccCc
Q 026434 3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSP--PFNVFHLAYMENLQELELEYCNLEEMKIDSTDE 80 (238)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l--~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~ 80 (238)
.+..+.+|+.|++.......+. .......++|+.|.+.++.-- ......+.++++|+.|++++|.+..+..+.
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~--- 499 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLT--RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM--- 499 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECC--TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT---
T ss_pred cccCcccccEEecCCCCcceeC--hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh---
Confidence 4567888888887533211110 011112357889988887521 111234677889999999988855443221
Q ss_pred cCcccccCCCCccEEEEecCCCCCcCc----------ccccCCCccEEEEecccccceeccccccccccccccccccccc
Q 026434 81 VKKLFQSGFRSLNTVHVFYCQKAKDLT----------WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFA 150 (238)
Q Consensus 81 ~~~~~~~~l~~L~~L~i~~C~~L~~l~----------~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p 150 (238)
...+++|+.|+++++ +++.++ .+..+++|++|+++++ ++..+.. .....++
T Consensus 500 -----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~------------~~~~~l~ 560 (680)
T 1ziw_A 500 -----LEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV------------EVFKDLF 560 (680)
T ss_dssp -----TTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCT
T ss_pred -----hccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH------------HHccccc
Confidence 245778888888877 455431 1456788888888776 4443321 2345677
Q ss_pred ccceeeccccccccccCCCC-CCCCCccEEeEcCccCCCCCCC
Q 026434 151 QLEYLTISWGINLKGVYPNP-LPFPKLKKIKVRGCRHLKKLPL 192 (238)
Q Consensus 151 ~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~~C~~L~~lp~ 192 (238)
+|+.|++++. +++.++... ..+++|+.|+++++ +++.+|.
T Consensus 561 ~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~ 601 (680)
T 1ziw_A 561 ELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEK 601 (680)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCH
T ss_pred CcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccCh
Confidence 7888877543 566666543 35677888888776 5555553
No 85
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.49 E-value=1.3e-07 Score=87.42 Aligned_cols=175 Identities=16% Similarity=0.153 Sum_probs=93.9
Q ss_pred ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-ccc-chhhc------ccCCeEEEeecCCceEEecc
Q 026434 6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVF-HLAYM------ENLQELELEYCNLEEMKIDS 77 (238)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~-~l~~l------~~L~~L~i~~c~l~~i~~~~ 77 (238)
++.+|+.|++...... ..+.....-.++|+.|++.++..+.. .++ .+.++ ++|++|++++|.+..++...
T Consensus 247 ~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNL--TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTC--SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred ccCCCCEEEecCCcCC--ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 7888998888744311 11122222235788888888753332 122 24444 78888888888744442100
Q ss_pred cCccCcccccCCCCccEEEEecCCCCC-cCcccccCCCccEEEEecccccceeccccc---c-c--------cccccccc
Q 026434 78 TDEVKKLFQSGFRSLNTVHVFYCQKAK-DLTWLVFVQNLKKLRIEFCDDVEEIIGVDK---L-R--------DISEIIGS 144 (238)
Q Consensus 78 ~~~~~~~~~~~l~~L~~L~i~~C~~L~-~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~---~-~--------~~~~~~~~ 144 (238)
....+++|+.|+++++ +++ .++.+..+++|++|++.++. +..+...-. . . .....+ .
T Consensus 325 -------~l~~l~~L~~L~L~~N-~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp-~ 394 (636)
T 4eco_A 325 -------SLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIP-N 394 (636)
T ss_dssp -------HHTTCTTCCEEECCSC-CCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCC-S
T ss_pred -------hhccCCCCCEEeCcCC-cCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccc-h
Confidence 1245667777777666 344 45544555666666666552 222211000 0 0 000011 1
Q ss_pred cc--ccccccceeeccccccccccCCC-------CCCCCCccEEeEcCccCCCCCCCC
Q 026434 145 EH--NFFAQLEYLTISWGINLKGVYPN-------PLPFPKLKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 145 ~~--~~~p~L~~L~L~~~~~L~~i~~~-------~~~~~~L~~L~i~~C~~L~~lp~~ 193 (238)
.+ ..+++|+.|+++++.--..++.. ...+++|+.|+++++ +++.+|..
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~ 451 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKE 451 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTH
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHH
Confidence 12 22458999999876422222221 225679999999998 45678864
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.49 E-value=2.6e-07 Score=83.52 Aligned_cols=184 Identities=11% Similarity=0.065 Sum_probs=96.9
Q ss_pred cccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcc
Q 026434 5 LGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKL 84 (238)
Q Consensus 5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~ 84 (238)
..+ +|+.|++.......+ .. ...++|+.|.+.++..... .....+++|+.|++++|.+..+.... .
T Consensus 302 ~~~-~L~~L~l~~n~~~~l---~~--~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~------~ 367 (570)
T 2z63_A 302 YNF-GWQHLELVNCKFGQF---PT--LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCS------Q 367 (570)
T ss_dssp SCC-CCSEEEEESCBCSSC---CB--CBCSSCCEEEEESCBSCCB--CCCCBCTTCCEEECCSSCCBEEEEEE------H
T ss_pred ccC-CccEEeeccCccccc---Cc--ccccccCEEeCcCCccccc--cccccCCCCCEEeCcCCccCcccccc------c
Confidence 345 788888865443322 21 2346899999999864332 22267899999999998854332100 0
Q ss_pred cccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEecccccceecccc-----c--------cccccccccccccccc
Q 026434 85 FQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEIIGVD-----K--------LRDISEIIGSEHNFFA 150 (238)
Q Consensus 85 ~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l~~~~-----~--------~~~~~~~~~~~~~~~p 150 (238)
....+++|+.|++++|. +..++ .+..+++|++|++.+|. +....+.. . .....+.....+..++
T Consensus 368 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp HHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred cccccCccCEEECCCCc-cccccccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 11234555555555542 22222 13344444444444432 11110000 0 0000000013455688
Q ss_pred ccceeeccccccc-cccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEEE
Q 026434 151 QLEYLTISWGINL-KGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIE 205 (238)
Q Consensus 151 ~L~~L~L~~~~~L-~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~ 205 (238)
+|++|++.++.-- ..++.....+++|+.|++++|. ++.++...-...++|+.+.
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEE
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEe
Confidence 9999999887633 2455556678999999999984 4555322222234565553
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.49 E-value=2.1e-07 Score=83.45 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=32.3
Q ss_pred ccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccC
Q 026434 145 EHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 145 ~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~ 186 (238)
.+..+++|++|+++++ +++.++.. ...+++|+.|++.+++-
T Consensus 439 ~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 439 QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 3457899999999987 67887765 45688899999888763
No 88
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.49 E-value=2.5e-07 Score=70.49 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=82.6
Q ss_pred cccCCeEEEeecCCc--eEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccc
Q 026434 57 MENLQELELEYCNLE--EMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDK 134 (238)
Q Consensus 57 l~~L~~L~i~~c~l~--~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~ 134 (238)
.++|+.|++++|.+. .+. .....+++|+.|++++|. ++.+..+..+++|++|+++++. +...++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~---------~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--- 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIE---------GLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLD--- 88 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCS---------SCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCC---
T ss_pred cccCCEEECCCCCCChhhHH---------HHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHH---
Confidence 478999999999844 442 122468999999999984 8887777889999999999884 333211
Q ss_pred ccccccccccccccccccceeeccccccccccC--CCCCCCCCccEEeEcCccCCCCCCC
Q 026434 135 LRDISEIIGSEHNFFAQLEYLTISWGINLKGVY--PNPLPFPKLKKIKVRGCRHLKKLPL 192 (238)
Q Consensus 135 ~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~--~~~~~~~~L~~L~i~~C~~L~~lp~ 192 (238)
.....+++|++|+++++ .+++++ .....+++|+.|++++++ +..+|.
T Consensus 89 ---------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~ 137 (168)
T 2ell_A 89 ---------MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLND 137 (168)
T ss_dssp ---------HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTT
T ss_pred ---------HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHH
Confidence 23345899999999987 566654 234568999999999984 556664
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.48 E-value=1.6e-07 Score=84.15 Aligned_cols=186 Identities=12% Similarity=0.055 Sum_probs=100.0
Q ss_pred cCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEec---------c
Q 026434 7 LKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKID---------S 77 (238)
Q Consensus 7 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~---------~ 77 (238)
+.+|+.|+++......+. .....-.++|+.|++.++. +.. ...+..+++|+.|++++|.+..+... .
T Consensus 33 ~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~-~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~ 108 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQIS--AADLAPFTKLELLNLSSNV-LYE-TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (487)
T ss_dssp GGGCCEEECCSSCCCCCC--GGGGTTCTTCCEEECTTSC-CEE-EEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred CCCccEEEeeCCcCCCCC--HHHHhCCCCCCEEEeeCCC-CCC-CcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcC
Confidence 447888887643322211 0111123578888888764 222 23377778888888887764444321 1
Q ss_pred cCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccc---cc----------ccccc
Q 026434 78 TDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKL---RD----------ISEII 142 (238)
Q Consensus 78 ~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~---~~----------~~~~~ 142 (238)
... .......+++|+.|+++++ +++.++ .+..+++|++|+++++ .+..+++..-. .. ..+.
T Consensus 109 N~l-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 109 NNI-SRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SCC-CCEEECCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CcC-CCCCccccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 000 0111234677777777776 455543 2455777777777765 33332211000 00 0000
Q ss_pred ccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 143 GSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 143 ~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
.....+++|+.|+++++ .+++++.....+++|+.|+++++ ++..+|..... .+.|..+
T Consensus 185 -~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~-l~~L~~L 242 (487)
T 3oja_A 185 -KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRF-SQNLEHF 242 (487)
T ss_dssp -ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCC-CTTCCEE
T ss_pred -cccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhcc-CCCCCEE
Confidence 12234677777777765 45666555556788999998886 46667755322 2455555
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.47 E-value=1.8e-06 Score=73.81 Aligned_cols=159 Identities=14% Similarity=0.049 Sum_probs=92.6
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCcc-----------------CcccccCCCCccE
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEV-----------------KKLFQSGFRSLNT 94 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~-----------------~~~~~~~l~~L~~ 94 (238)
+++++|++.+. .++. ....+.++++|++|++++|. ++.+..+..... .+.....+++|+.
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 56777777764 3333 22235677778888888777 555432221100 0112245667777
Q ss_pred EEEecCCCCCcCcccc--cCCCccEEEEecccccceecccccc-------------cccccccccccccccccceeeccc
Q 026434 95 VHVFYCQKAKDLTWLV--FVQNLKKLRIEFCDDVEEIIGVDKL-------------RDISEIIGSEHNFFAQLEYLTISW 159 (238)
Q Consensus 95 L~i~~C~~L~~l~~~~--~l~~L~~L~i~~C~~l~~l~~~~~~-------------~~~~~~~~~~~~~~p~L~~L~L~~ 159 (238)
|+++++ +++.++... ...++..|.+.++.++..+....-. ....++. ......++|+.|.+.+
T Consensus 109 L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~-~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 109 LLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH-NSAFNGTQLDELNLSD 186 (350)
T ss_dssp EEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC-TTSSTTEEEEEEECTT
T ss_pred cccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC-hhhccccchhHHhhcc
Confidence 777766 455554322 3345566666666666555321100 0001111 2233456788888888
Q ss_pred cccccccCCCC-CCCCCccEEeEcCccCCCCCCCCCCC
Q 026434 160 GINLKGVYPNP-LPFPKLKKIKVRGCRHLKKLPLNSSS 196 (238)
Q Consensus 160 ~~~L~~i~~~~-~~~~~L~~L~i~~C~~L~~lp~~~~~ 196 (238)
...++.++.+. ..+++|+.|+++++ +++.+|...-.
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~ 223 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLE 223 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCT
T ss_pred CCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhc
Confidence 88888888654 56789999999987 68899876543
No 91
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=2.3e-07 Score=88.73 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=64.3
Q ss_pred ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-ccc-chhhc-------ccCCeEEEeecCCceEEec
Q 026434 6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVF-HLAYM-------ENLQELELEYCNLEEMKID 76 (238)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~-~l~~l-------~~L~~L~i~~c~l~~i~~~ 76 (238)
++.+|+.|++...... ..+.....-.++|+.|++.++..+.. .++ .+.++ ++|+.|++++|.+..++..
T Consensus 489 ~L~~L~~L~Ls~N~l~--~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNM--TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTC--CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred cCCCCCEEECcCCCCC--ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 7888998888643211 11111112235788888887753332 122 23444 3888888888885444210
Q ss_pred ccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEeccc
Q 026434 77 STDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCD 124 (238)
Q Consensus 77 ~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~ 124 (238)
.....+++|+.|+++++ +++.++.+..+++|++|+++++.
T Consensus 567 -------~~l~~L~~L~~L~Ls~N-~l~~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 567 -------ASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp -------HHHTTCTTCCEEECTTS-CCCBCCCCCTTSEESEEECCSSC
T ss_pred -------hhhhcCCCCCEEECCCC-CcccchhhcCCCcceEEECcCCc
Confidence 01345777777777776 45566666677777777777663
No 92
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.47 E-value=1.6e-07 Score=88.54 Aligned_cols=146 Identities=12% Similarity=-0.034 Sum_probs=75.4
Q ss_pred cceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccC-------------c--cCcccccCCCCccEEEE
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTD-------------E--VKKLFQSGFRSLNTVHV 97 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~-------------~--~~~~~~~~l~~L~~L~i 97 (238)
++|+.|++.+|.-.......+.++++|+.|++++|. ...++..... . ..+.....+++|+.|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 456777766663211112245566667777666665 2221100000 0 00111233455555555
Q ss_pred ecCCCCC-cCc-ccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCC
Q 026434 98 FYCQKAK-DLT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPK 175 (238)
Q Consensus 98 ~~C~~L~-~l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~ 175 (238)
++|. +. .++ ++..+++|++|++.+|.-...+ + ..+..+++|+.|+++++.--..++.....+++
T Consensus 474 ~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 474 DFND-LTGEIPSGLSNCTNLNWISLSNNRLTGEI-P------------KWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp CSSC-CCSCCCGGGGGCTTCCEEECCSSCCCSCC-C------------GGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred cCCc-ccCcCCHHHhcCCCCCEEEccCCccCCcC-C------------hHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 5552 32 222 3445555555555555321111 1 34556788888888877544455555566788
Q ss_pred ccEEeEcCccCCCCCCCC
Q 026434 176 LKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 176 L~~L~i~~C~~L~~lp~~ 193 (238)
|+.|++.+|+--..+|..
T Consensus 540 L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CCEEECCSSEEESBCCGG
T ss_pred CCEEECCCCccCCcCChH
Confidence 888888888766566643
No 93
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=6.8e-08 Score=74.86 Aligned_cols=39 Identities=15% Similarity=0.003 Sum_probs=17.3
Q ss_pred ccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCC
Q 026434 151 QLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKK 189 (238)
Q Consensus 151 ~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~ 189 (238)
+|++|+|++|+++++-.. ....+++|+.|++++|++++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 444444444444433111 011245555555555555543
No 94
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.46 E-value=4.4e-07 Score=74.73 Aligned_cols=128 Identities=12% Similarity=0.144 Sum_probs=75.3
Q ss_pred hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--cc
Q 026434 33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WL 109 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~ 109 (238)
..+++.|++.++. +.. ....+.++++|+.|++++|.+..+.... ...+++|+.|+++++ +++.++ .+
T Consensus 27 ~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~~~ 96 (276)
T 2z62_A 27 PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--------YQSLSHLSTLILTGN-PIQSLALGAF 96 (276)
T ss_dssp CTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTT--------TTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred CCCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHH--------ccCCcCCCEEECCCC-ccCccChhhh
Confidence 3579999998874 333 2236788899999999999866553221 245778888888776 455543 35
Q ss_pred ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc--cCCCCCCCCCccEEeEcCc
Q 026434 110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG--VYPNPLPFPKLKKIKVRGC 184 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~--i~~~~~~~~~L~~L~i~~C 184 (238)
..+++|++|++.++. +..+.. ..+..+++|++|++.+.. +++ ++.....+++|+.|+++++
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLEN------------FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTT------------CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCCccccEEECCCCC-ccccCc------------hhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC
Confidence 567788888777652 222211 123445556666555432 222 1222233455555555554
No 95
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.45 E-value=1.7e-07 Score=69.99 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=82.2
Q ss_pred cccCCeEEEeecCCc--eEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccc
Q 026434 57 MENLQELELEYCNLE--EMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDK 134 (238)
Q Consensus 57 l~~L~~L~i~~c~l~--~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~ 134 (238)
.++|+.|++++|.+. .+. .....+++|+.|++++| +++.+..+..+++|++|+++++. +...++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~--- 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE---------GLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLE--- 81 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC---------SCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTH---
T ss_pred CccCeEEEccCCcCChhHHH---------HHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHH---
Confidence 478999999999844 442 12356899999999998 68887777889999999999874 333211
Q ss_pred ccccccccccccccccccceeeccccccccccC--CCCCCCCCccEEeEcCccCCCCCCC
Q 026434 135 LRDISEIIGSEHNFFAQLEYLTISWGINLKGVY--PNPLPFPKLKKIKVRGCRHLKKLPL 192 (238)
Q Consensus 135 ~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~--~~~~~~~~L~~L~i~~C~~L~~lp~ 192 (238)
.....+++|++|+++++. +++++ .....+++|+.|++++| .++.+|.
T Consensus 82 ---------~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 82 ---------VLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp ---------HHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred ---------HHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 233458999999998764 55543 33456899999999998 4666664
No 96
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.44 E-value=5.3e-07 Score=80.04 Aligned_cols=136 Identities=16% Similarity=0.125 Sum_probs=73.2
Q ss_pred cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCC
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQ 113 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~ 113 (238)
++|+.|++.++. +.. ++.+.++++|++|++++|.++.+. ..+++|+.|+++++ +++.++.+..++
T Consensus 131 ~~L~~L~L~~n~-l~~-lp~~~~l~~L~~L~l~~N~l~~lp------------~~~~~L~~L~L~~n-~l~~l~~~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEK-LPELQNSSFLKIIDVDNNSLKKLP------------DLPPSLEFIAAGNN-QLEELPELQNLP 195 (454)
T ss_dssp TTCCEEECCSSC-CSS-CCCCTTCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSS-CCSSCCCCTTCT
T ss_pred CCCCEEECcCCC-CCC-CcccCCCCCCCEEECCCCcCcccC------------CCcccccEEECcCC-cCCcCccccCCC
Confidence 356666665552 222 344566666777776666643331 12347777777776 566666666777
Q ss_pred CccEEEEecccccceeccccc--------ccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434 114 NLKKLRIEFCDDVEEIIGVDK--------LRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 114 ~L~~L~i~~C~~l~~l~~~~~--------~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~ 185 (238)
+|++|++.++. +..+..... ....... ..+..+++|++|+++++ .+++++. .+++|+.|++.+|.
T Consensus 196 ~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~l--p~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 196 FLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDNY 268 (454)
T ss_dssp TCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcc--cccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCCc
Confidence 77777777663 222211000 0000011 12456677777777764 3444432 24677888777763
Q ss_pred CCCCCCC
Q 026434 186 HLKKLPL 192 (238)
Q Consensus 186 ~L~~lp~ 192 (238)
++.+|.
T Consensus 269 -l~~l~~ 274 (454)
T 1jl5_A 269 -LTDLPE 274 (454)
T ss_dssp -CSCCCC
T ss_pred -ccccCc
Confidence 455553
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.42 E-value=7.9e-07 Score=74.70 Aligned_cols=86 Identities=15% Similarity=0.008 Sum_probs=48.1
Q ss_pred cceeEEEEeecCCCCCcccch--hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--cc
Q 026434 34 SITQSVGVYQCRSPPFNVFHL--AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WL 109 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l--~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~ 109 (238)
++|++|++.++.--......+ ..+++|++|+++++.+..+. ..... .....+++|+.|+++++ ++..++ .+
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~---l~~~~~~~L~~L~L~~N-~l~~~~~~~~ 169 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAE---LQQWLKPGLKVLSIAQA-HSLNFSCEQV 169 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHH---HHTTCCTTCCEEEEESC-SCCCCCTTTC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHH---HHHhhcCCCcEEEeeCC-CCccchHHHh
Confidence 467777777774211111122 66777888888777744331 10000 00011367778887776 455554 35
Q ss_pred ccCCCccEEEEeccc
Q 026434 110 VFVQNLKKLRIEFCD 124 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~ 124 (238)
..+++|++|+++++.
T Consensus 170 ~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 170 RVFPALSTLDLSDNP 184 (312)
T ss_dssp CCCSSCCEEECCSCT
T ss_pred ccCCCCCEEECCCCC
Confidence 567778888777764
No 98
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.40 E-value=9.3e-07 Score=80.68 Aligned_cols=120 Identities=12% Similarity=0.051 Sum_probs=67.1
Q ss_pred ceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCC
Q 026434 35 ITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQN 114 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~ 114 (238)
.|+.|.+.++ .+.. ++.+.++++|+.|++++|.+..++ ...+.+++|+.|+++++ +++.++.++.+++
T Consensus 442 ~L~~L~Ls~n-~l~~-lp~~~~l~~L~~L~Ls~N~l~~lp---------~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHLAHK-DLTV-LCHLEQLLLVTHLDLSHNRLRALP---------PALAALRCLEVLQASDN-ALENVDGVANLPR 509 (567)
T ss_dssp TCSEEECTTS-CCSS-CCCGGGGTTCCEEECCSSCCCCCC---------GGGGGCTTCCEEECCSS-CCCCCGGGTTCSS
T ss_pred CceEEEecCC-CCCC-CcCccccccCcEeecCcccccccc---------hhhhcCCCCCEEECCCC-CCCCCcccCCCCC
Confidence 4666666665 2232 445666677777777776644442 12345667777777665 5666666666777
Q ss_pred ccEEEEecccccceec-ccccccccccccccccccccccceeeccccccccccCCCC----CCCCCccEEe
Q 026434 115 LKKLRIEFCDDVEEII-GVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP----LPFPKLKKIK 180 (238)
Q Consensus 115 L~~L~i~~C~~l~~l~-~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~----~~~~~L~~L~ 180 (238)
|++|+++++ .+..+. + ..+..+++|+.|++++.+ +++++... ..+|+|+.|+
T Consensus 510 L~~L~Ls~N-~l~~~~~p------------~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 510 LQELLLCNN-RLQQSAAI------------QPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCEEECCSS-CCCSSSTT------------GGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcEEECCCC-CCCCCCCc------------HHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 777777665 333331 1 344556677777776543 44443211 1255665553
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.38 E-value=1.3e-06 Score=80.68 Aligned_cols=95 Identities=17% Similarity=0.069 Sum_probs=47.6
Q ss_pred CCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccc---c--ccccccccccccccceeecccccc
Q 026434 88 GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRD---I--SEIIGSEHNFFAQLEYLTISWGIN 162 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~---~--~~~~~~~~~~~p~L~~L~L~~~~~ 162 (238)
.+++|+.|+++++ +++.++. .+++|+.|.+.++ .+..+........ . ..+. .....+++|+.|+++++ +
T Consensus 179 ~~~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N~L~-~lp~~l~~L~~L~Ls~N-~ 252 (622)
T 3g06_A 179 LPSGLQELSVSDN-QLASLPT--LPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLT-SLPVLPSELKELMVSGN-R 252 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS-C
T ss_pred cCCCCcEEECCCC-CCCCCCC--ccchhhEEECcCC-cccccCCCCCCCCEEEccCCccC-cCCCCCCcCcEEECCCC-C
Confidence 3466777777665 4555442 2355666665554 2222211000000 0 0000 00034567777777665 5
Q ss_pred ccccCCCCCCCCCccEEeEcCccCCCCCCC
Q 026434 163 LKGVYPNPLPFPKLKKIKVRGCRHLKKLPL 192 (238)
Q Consensus 163 L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~ 192 (238)
+++++. .+++|+.|++++| +++.+|.
T Consensus 253 L~~lp~---~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 253 LTSLPM---LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCCSCCG
T ss_pred CCcCCc---ccccCcEEeCCCC-CCCcCCH
Confidence 555544 4677777777777 5666664
No 100
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.37 E-value=1.6e-07 Score=85.27 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=28.9
Q ss_pred ccccccceeeccccccccc--cCCCCCCCCCccEEeEcCccCCCCC
Q 026434 147 NFFAQLEYLTISWGINLKG--VYPNPLPFPKLKKIKVRGCRHLKKL 190 (238)
Q Consensus 147 ~~~p~L~~L~L~~~~~L~~--i~~~~~~~~~L~~L~i~~C~~L~~l 190 (238)
..+++|++|+|++|+ +.. +......+++|+.|++++|. ++..
T Consensus 485 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 457888899888887 432 11112357899999999998 5543
No 101
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.32 E-value=5.7e-07 Score=69.21 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=83.2
Q ss_pred chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccc
Q 026434 53 HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGV 132 (238)
Q Consensus 53 ~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~ 132 (238)
...++.+|+.|++++|.++.+. .. ...+++|+.|+++++ .++.+..+..+++|++|+++++ .+..+.+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~--~~-------~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~- 81 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIE--NL-------GATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGE- 81 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCC--CG-------GGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECS-
T ss_pred hcCCcCCceEEEeeCCCCchhH--Hh-------hhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccCc-
Confidence 3455678999999999855441 11 123459999999998 6888777888999999999987 4555421
Q ss_pred ccccccccccccccccccccceeeccccccccccCC--CCCCCCCccEEeEcCccCCCCCCC
Q 026434 133 DKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGCRHLKKLPL 192 (238)
Q Consensus 133 ~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C~~L~~lp~ 192 (238)
.....+++|++|++++. .+++++. ....+++|+.|++.+++- ..+|.
T Consensus 82 -----------~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~ 130 (176)
T 1a9n_A 82 -----------GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPV-TNKKH 130 (176)
T ss_dssp -----------CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTT
T ss_pred -----------chhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCC-CCcHh
Confidence 12357899999999876 3555543 345689999999999864 55664
No 102
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.32 E-value=3.5e-06 Score=76.61 Aligned_cols=124 Identities=17% Similarity=0.204 Sum_probs=90.1
Q ss_pred eecCCCCC-ccc-chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccE
Q 026434 42 YQCRSPPF-NVF-HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKK 117 (238)
Q Consensus 42 ~~c~~l~~-~~~-~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~ 117 (238)
.+|.+..- .+| .++ +++++|+++++.++.+..+. ...+++|+.|++++| +++.++. +..+++|++
T Consensus 36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~--------f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~ 104 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYS--------FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLST 104 (635)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCE
T ss_pred EECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHH--------HhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCE
Confidence 46765332 233 233 48999999998877774322 346899999999998 6888764 578999999
Q ss_pred EEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCCCCCC
Q 026434 118 LRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 118 L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~lp 191 (238)
|+++++ +++.+.. ..+..+++|++|++.++ +++++... ...+++|+.|++.++. ++.++
T Consensus 105 L~Ls~N-~l~~l~~------------~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~ 164 (635)
T 4g8a_A 105 LILTGN-PIQSLAL------------GAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFK 164 (635)
T ss_dssp EECTTC-CCCEECG------------GGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCC
T ss_pred EEccCC-cCCCCCH------------HHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCC
Confidence 999998 4666532 34567899999999987 57777653 4568999999999874 44433
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.32 E-value=3.7e-06 Score=76.20 Aligned_cols=156 Identities=11% Similarity=0.090 Sum_probs=86.2
Q ss_pred ceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc----ccc
Q 026434 35 ITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT----WLV 110 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~----~~~ 110 (238)
+++.|++.++.- .. ......+++|++|++++|.+..... .....+++|+.|+++++ +++.++ .+.
T Consensus 332 ~L~~L~l~~n~~-~~-~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~ 400 (562)
T 3a79_B 332 NIKMLSISDTPF-IH-MVCPPSPSSFTFLNFTQNVFTDSVF--------QGCSTLKRLQTLILQRN-GLKNFFKVALMTK 400 (562)
T ss_dssp CCSEEEEESSCC-CC-CCCCSSCCCCCEEECCSSCCCTTTT--------TTCCSCSSCCEEECCSS-CCCBTTHHHHTTT
T ss_pred cceEEEccCCCc-cc-ccCccCCCCceEEECCCCccccchh--------hhhcccCCCCEEECCCC-CcCCcccchhhhc
Confidence 577888877743 21 1222566777777777776332111 11234566666666665 455443 134
Q ss_pred cCCCccEEEEecccccce-ecccc-cc-ccc-------ccccccccccc-cccceeeccccccccccCCCCCCCCCccEE
Q 026434 111 FVQNLKKLRIEFCDDVEE-IIGVD-KL-RDI-------SEIIGSEHNFF-AQLEYLTISWGINLKGVYPNPLPFPKLKKI 179 (238)
Q Consensus 111 ~l~~L~~L~i~~C~~l~~-l~~~~-~~-~~~-------~~~~~~~~~~~-p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L 179 (238)
.+++|++|+++++. +.. +.... .. ... ..+.......+ ++|+.|+++++ +++.++.....+++|+.|
T Consensus 401 ~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L 478 (562)
T 3a79_B 401 NMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQEL 478 (562)
T ss_dssp TCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEE
T ss_pred CCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEE
Confidence 56666666666553 222 21100 00 000 00000111223 68999999887 788888776789999999
Q ss_pred eEcCccCCCCCCCCCCCCCCcceEE
Q 026434 180 KVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 180 ~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
+++++ +++.+|...-....+|+.+
T Consensus 479 ~L~~N-~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 479 NVASN-QLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp ECCSS-CCCCCCTTSTTTCTTCCCE
T ss_pred ECCCC-CCCCCCHHHHhcCCCCCEE
Confidence 99997 5778887632223445444
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.30 E-value=1.5e-06 Score=77.17 Aligned_cols=75 Identities=11% Similarity=-0.026 Sum_probs=42.8
Q ss_pred cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCC
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQ 113 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~ 113 (238)
.+|+.|++.++. +.. ++.+.++++|+.|++++|.+..+. ...++|+.|++++| +++.++.+..++
T Consensus 173 ~~L~~L~L~~n~-l~~-l~~~~~l~~L~~L~l~~N~l~~l~------------~~~~~L~~L~l~~n-~l~~lp~~~~l~ 237 (454)
T 1jl5_A 173 PSLEFIAAGNNQ-LEE-LPELQNLPFLTAIYADNNSLKKLP------------DLPLSLESIVAGNN-ILEELPELQNLP 237 (454)
T ss_dssp TTCCEEECCSSC-CSS-CCCCTTCTTCCEEECCSSCCSSCC------------CCCTTCCEEECCSS-CCSSCCCCTTCT
T ss_pred ccccEEECcCCc-CCc-CccccCCCCCCEEECCCCcCCcCC------------CCcCcccEEECcCC-cCCcccccCCCC
Confidence 356666666552 222 345666677777777766633221 11246666666666 455555555666
Q ss_pred CccEEEEecc
Q 026434 114 NLKKLRIEFC 123 (238)
Q Consensus 114 ~L~~L~i~~C 123 (238)
+|++|++.++
T Consensus 238 ~L~~L~l~~N 247 (454)
T 1jl5_A 238 FLTTIYADNN 247 (454)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 6666666664
No 105
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.29 E-value=1.3e-06 Score=83.09 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=43.2
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCc-Cc---c
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD-LT---W 108 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~---~ 108 (238)
++|+.|++.++..... ....+.++++|+.|++++|.+..+..+ ....+++|+.|++++| +++. ++ +
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 118 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD--------AFQGLFHLFELRLYFC-GLSDAVLKDGY 118 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT--------SSCSCSSCCCEECTTC-CCSSCCSTTCC
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh--------HccCCcccCEeeCcCC-CCCcccccCcc
Confidence 5667777766643322 223456666777777776664433211 1234556666666665 3433 11 1
Q ss_pred cccCCCccEEEEecc
Q 026434 109 LVFVQNLKKLRIEFC 123 (238)
Q Consensus 109 ~~~l~~L~~L~i~~C 123 (238)
+..+++|++|+++++
T Consensus 119 ~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 119 FRNLKALTRLDLSKN 133 (844)
T ss_dssp CSSCSSCCEEEEESC
T ss_pred ccccCCCCEEECCCC
Confidence 455666666666655
No 106
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.28 E-value=2.4e-06 Score=78.98 Aligned_cols=133 Identities=15% Similarity=0.107 Sum_probs=70.9
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccc
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLV 110 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~ 110 (238)
++|+.|++.++. +.. ....+.++++|+.|++++|.+..+..+ ....+++|+.|+++++ +++.++ .+.
T Consensus 49 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 118 (680)
T 1ziw_A 49 SQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDK--------TFAFCTNLTELHLMSN-SIQKIKNNPFV 118 (680)
T ss_dssp TTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSS-CCCCCCSCTTT
T ss_pred CcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChh--------hhccCCCCCEEECCCC-ccCccChhHcc
Confidence 345555555442 121 112345555555555555553333111 1234667777777666 455554 245
Q ss_pred cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC---CCCCCCccEEeEcCccCC
Q 026434 111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN---PLPFPKLKKIKVRGCRHL 187 (238)
Q Consensus 111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~---~~~~~~L~~L~i~~C~~L 187 (238)
.+++|++|++.++. +..+.. ..+..+++|++|++.++. ++.+... ...+++|+.|++.++ ++
T Consensus 119 ~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l 183 (680)
T 1ziw_A 119 KQKNLITLDLSHNG-LSSTKL------------GTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN-QI 183 (680)
T ss_dssp TCTTCCEEECCSSC-CSCCCC------------CSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC-CC
T ss_pred ccCCCCEEECCCCc-ccccCc------------hhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCC-cc
Confidence 66777777776662 222211 234567788888887652 3443321 224578999999887 45
Q ss_pred CCCC
Q 026434 188 KKLP 191 (238)
Q Consensus 188 ~~lp 191 (238)
+.++
T Consensus 184 ~~~~ 187 (680)
T 1ziw_A 184 KEFS 187 (680)
T ss_dssp CCBC
T ss_pred cccC
Confidence 5544
No 107
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.28 E-value=3.7e-06 Score=64.52 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=69.0
Q ss_pred ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434 58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL 135 (238)
Q Consensus 58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~ 135 (238)
++|+.|+++++.+..+... ....+++|+.|+++++ +++.++. +..+++|++|++.++ .+..+..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~---- 93 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHG--------VFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN---- 93 (177)
T ss_dssp TTCSEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred CCCcEEEeCCCcccEeCHH--------HhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH----
Confidence 6788888888775444211 1235778888888876 5776653 467788888888776 3443321
Q ss_pred cccccccccccccccccceeeccccccccccCCCC-CCCCCccEEeEcCcc
Q 026434 136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKVRGCR 185 (238)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~~C~ 185 (238)
.....+++|++|++.+. .++.++... ..+++|+.|++.+.+
T Consensus 94 --------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 94 --------GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp --------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 23456788888888766 566666543 457888888887764
No 108
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.28 E-value=1.3e-05 Score=72.65 Aligned_cols=178 Identities=12% Similarity=0.117 Sum_probs=95.6
Q ss_pred CCCcceeEEeeehH-HHHh-hhcCchhhcceeEEEEeecCCCCCccc--chh---hcccCCeEEEeecCCceEEecccCc
Q 026434 8 KHLKVLSWSFGSSL-AVQK-FLKYPKLVSITQSVGVYQCRSPPFNVF--HLA---YMENLQELELEYCNLEEMKIDSTDE 80 (238)
Q Consensus 8 ~~L~~L~i~~~~~~-~l~~-l~~~~~l~~~L~~L~l~~c~~l~~~~~--~l~---~l~~L~~L~i~~c~l~~i~~~~~~~ 80 (238)
.+|+.|++...... .+.. ++... ..+++.|.+.+...-...++ .+. ...+|+.|++++|.+..+.
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~--~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~------ 347 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYS--ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV------ 347 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCC--SCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC------
T ss_pred ccccEEEEeccEeeccccchhhhcc--cccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc------
Confidence 47888888654322 1111 11110 13555555555432111112 121 2257999999999843221
Q ss_pred cCcccccCCCCccEEEEecCCCCCc-C-cccccCCCccEEEEecccccceeccccc------c--------ccccc-ccc
Q 026434 81 VKKLFQSGFRSLNTVHVFYCQKAKD-L-TWLVFVQNLKKLRIEFCDDVEEIIGVDK------L--------RDISE-IIG 143 (238)
Q Consensus 81 ~~~~~~~~l~~L~~L~i~~C~~L~~-l-~~~~~l~~L~~L~i~~C~~l~~l~~~~~------~--------~~~~~-~~~ 143 (238)
....+++|+.|+++++ +++. + ..+..+++|++|++.++ ++..+..... . ....+ .+.
T Consensus 348 ----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 348 ----CPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp ----CCSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred ----CccCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 1145889999999988 5665 2 24678999999999987 4443311000 0 00000 111
Q ss_pred cccccccccceeeccccccccccCCCCCCC-CCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 144 SEHNFFAQLEYLTISWGINLKGVYPNPLPF-PKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 144 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~-~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
.....+++|+.|+++++. +++.. ...+ ++|+.|+++++ +++.+|.... ...+|+.+
T Consensus 422 ~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~~L~~L~L~~N-~l~~ip~~~~-~l~~L~~L 478 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNM-LTGSV--FRCLPPKVKVLDLHNN-RIMSIPKDVT-HLQALQEL 478 (562)
T ss_dssp CCCCCCTTCCEEECCSSC-CCGGG--GSSCCTTCSEEECCSS-CCCCCCTTTT-SSCCCSEE
T ss_pred hhhcCcccCCEEECCCCC-CCcch--hhhhcCcCCEEECCCC-cCcccChhhc-CCCCCCEE
Confidence 123345666666666543 22111 1123 68999999888 7888886554 23455554
No 109
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.28 E-value=9.1e-07 Score=81.61 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=48.2
Q ss_pred CCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC
Q 026434 90 RSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN 169 (238)
Q Consensus 90 ~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~ 169 (238)
++|+.|+++++ +++.++ ..+++|++|+++++ ++..+. . .+++|+.|++.++ +++.++..
T Consensus 221 ~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp--------------~--~~~~L~~L~Ls~N-~L~~lp~~ 279 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLP--------------M--LPSGLLSLSVYRN-QLTRLPES 279 (622)
T ss_dssp TTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCC--------------C--CCTTCCEEECCSS-CCCSCCGG
T ss_pred CCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCC--------------c--ccccCcEEeCCCC-CCCcCCHH
Confidence 44555555544 344443 33455555555554 333221 1 5688999999887 67777766
Q ss_pred CCCCCCccEEeEcCccC
Q 026434 170 PLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 170 ~~~~~~L~~L~i~~C~~ 186 (238)
...+++|+.|++.+++-
T Consensus 280 l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 280 LIHLSSETTVNLEGNPL 296 (622)
T ss_dssp GGGSCTTCEEECCSCCC
T ss_pred HhhccccCEEEecCCCC
Confidence 66789999999998863
No 110
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.27 E-value=2.8e-07 Score=83.63 Aligned_cols=39 Identities=13% Similarity=0.034 Sum_probs=26.5
Q ss_pred ccccccceeeccccccccccCC--CCCCCCCccEEeEcCccC
Q 026434 147 NFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 147 ~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C~~ 186 (238)
..+++|+.|+|.+|+- ..... ....+++|+.|++++|+.
T Consensus 478 ~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4478888888888864 22111 223478899999999975
No 111
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.26 E-value=9.8e-08 Score=86.69 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=41.8
Q ss_pred cceeEEEEeecCCCCC-cccch-hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCC-CCCc--Ccc
Q 026434 34 SITQSVGVYQCRSPPF-NVFHL-AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQ-KAKD--LTW 108 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l-~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~-~L~~--l~~ 108 (238)
++|++|++.+|..+.. .+..+ .++++|++|++++|.+........ ......+++|+.|++++|. .+.. +..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l----~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL----SHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG----GGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH----HHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 3566666666643322 12222 355666666666655221111100 0112246677777777775 1211 111
Q ss_pred -cccCCCccEEEEecc
Q 026434 109 -LVFVQNLKKLRIEFC 123 (238)
Q Consensus 109 -~~~l~~L~~L~i~~C 123 (238)
...+++|++|.+.+|
T Consensus 206 l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHHCTTCCEEECCTT
T ss_pred HHHhCCCCcEEecCCC
Confidence 234677777777776
No 112
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.26 E-value=7.1e-06 Score=69.29 Aligned_cols=79 Identities=14% Similarity=0.053 Sum_probs=43.4
Q ss_pred cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434 34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV 112 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l 112 (238)
++++.|++.++. +.. ....+.++++|++|++++|.+..+..+. ...+++|+.|+++++ +++.++.. ..
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~l~~~-~~ 122 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKA--------FSPLRKLQKLYISKN-HLVEIPPN-LP 122 (332)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGG--------STTCTTCCEEECCSS-CCCSCCSS-CC
T ss_pred CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhH--------hhCcCCCCEEECCCC-cCCccCcc-cc
Confidence 467777777653 222 2234667777777777777654442211 234566666666655 45544421 12
Q ss_pred CCccEEEEecc
Q 026434 113 QNLKKLRIEFC 123 (238)
Q Consensus 113 ~~L~~L~i~~C 123 (238)
++|++|++.++
T Consensus 123 ~~L~~L~l~~n 133 (332)
T 2ft3_A 123 SSLVELRIHDN 133 (332)
T ss_dssp TTCCEEECCSS
T ss_pred ccCCEEECCCC
Confidence 56666666554
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.25 E-value=1.1e-05 Score=64.31 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=86.6
Q ss_pred ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccc
Q 026434 58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKL 135 (238)
Q Consensus 58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~ 135 (238)
++|+.|+++++.++.+... ....+++|+.|+++++ +++.+. .+..+++|++|+++++ .+..+..
T Consensus 32 ~~l~~L~l~~n~i~~i~~~--------~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~---- 97 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG--------AFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPK---- 97 (220)
T ss_dssp TTCCEEECCSSCCCEECTT--------SSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCT----
T ss_pred cCCCEEECCCCcCCCcCHh--------HhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCH----
Confidence 6899999999987666322 2346889999999987 577763 4678899999999886 4554421
Q ss_pred cccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
.....+++|+.|+|.+. .++.+.. ....+++|+.|+++++. ++.+|...-....+|+.+
T Consensus 98 --------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 98 --------SLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp --------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred --------hHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEE
Confidence 23457899999999876 4666644 34568999999999874 666765433323344433
No 114
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.24 E-value=1.9e-06 Score=72.31 Aligned_cols=154 Identities=13% Similarity=0.034 Sum_probs=82.5
Q ss_pred cceeEEEEeecCCCCCcccch--hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--cc
Q 026434 34 SITQSVGVYQCRSPPFNVFHL--AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WL 109 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l--~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~ 109 (238)
.+|+.|.+.++.-.......+ .++++|+.|++++|.+........ ......+++|+.|+++++ ++..++ .+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~----~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~ 165 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA----ELQQWLKPGLKVLSIAQA-HSPAFSCEQV 165 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH----HHHTTBCSCCCEEEEECC-SSCCCCTTSC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH----HHHhhhccCCCEEEeeCC-CcchhhHHHh
Confidence 468999998885322112233 678899999999887332100000 001124677888888776 455544 24
Q ss_pred ccCCCccEEEEecccccce--ecccc-----c---c-----cccccccc--c-ccccccccceeecccccccccc-CCCC
Q 026434 110 VFVQNLKKLRIEFCDDVEE--IIGVD-----K---L-----RDISEIIG--S-EHNFFAQLEYLTISWGINLKGV-YPNP 170 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~--l~~~~-----~---~-----~~~~~~~~--~-~~~~~p~L~~L~L~~~~~L~~i-~~~~ 170 (238)
..+++|++|+++++.-... +.... . . ........ . ....+++|++|++++.. ++++ +...
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~ 244 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA 244 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH
Confidence 5677788887777642210 10000 0 0 00000000 0 12345778888887653 4443 2222
Q ss_pred CCC---CCccEEeEcCccCCCCCCCCC
Q 026434 171 LPF---PKLKKIKVRGCRHLKKLPLNS 194 (238)
Q Consensus 171 ~~~---~~L~~L~i~~C~~L~~lp~~~ 194 (238)
..+ ++|+.|+++++ +++.+|...
T Consensus 245 ~~~~~~~~L~~L~Ls~N-~l~~lp~~~ 270 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFA-GLEQVPKGL 270 (310)
T ss_dssp SSCCCCTTCCCEECCSS-CCCSCCSCC
T ss_pred HhccCcCcCCEEECCCC-CCCchhhhh
Confidence 333 78999999887 466777654
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.17 E-value=3.3e-07 Score=83.21 Aligned_cols=39 Identities=8% Similarity=-0.110 Sum_probs=24.2
Q ss_pred ccccccceeecccccc-ccccCC--CCCCCCCccEEeEcCcc
Q 026434 147 NFFAQLEYLTISWGIN-LKGVYP--NPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 147 ~~~p~L~~L~L~~~~~-L~~i~~--~~~~~~~L~~L~i~~C~ 185 (238)
..+++|++|.+..|.+ +..-.. -...+++|+.|++.+|.
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 4578888888876654 221110 12247889999998875
No 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.17 E-value=6e-06 Score=63.31 Aligned_cols=106 Identities=10% Similarity=0.066 Sum_probs=76.8
Q ss_pred hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--c
Q 026434 33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--L 109 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~ 109 (238)
.++++.|.+.++. +.. ....+..+++|+.|+++++.+..+.... ...+++|+.|+++++ +++.++. +
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~N-~l~~~~~~~~ 96 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--------FDKLTKLTILYLHEN-KLQSLPNGVF 96 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhH--------ccCCCccCEEECCCC-CccccCHHHh
Confidence 3689999998864 333 2234678899999999999865553221 246889999999987 6877764 5
Q ss_pred ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434 110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI 161 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 161 (238)
..+++|++|++.++ .+..+.. .....+++|++|++.+.+
T Consensus 97 ~~l~~L~~L~l~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 97 DKLTQLKELALDTN-QLKSVPD------------GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSSC
T ss_pred hCCcccCEEECcCC-cceEeCH------------HHhcCCcccCEEEecCCC
Confidence 67899999999987 5554421 233568899999997653
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.17 E-value=2.1e-06 Score=80.61 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=76.5
Q ss_pred chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEecccccceecc
Q 026434 53 HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEIIG 131 (238)
Q Consensus 53 ~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l~~ 131 (238)
.+..+++|+.|+++++.+..+.. ....+++|+.|+++++ +++.++ .+..+++|++|+++++. +..++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~---------~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp- 286 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISA---------NIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLP- 286 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCG---------GGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCC-
T ss_pred hhccCCCCcEEECCCCCCCCCCh---------hhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccC-
Confidence 35667788888888887444421 2235788888888877 577766 36778888888888774 44442
Q ss_pred cccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccC
Q 026434 132 VDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~ 186 (238)
..+..+++|++|+|.++ .++.++.....+++|+.|++++++-
T Consensus 287 ------------~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 287 ------------AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ------------SSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred ------------hhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence 34567788888888876 5777776666788888888887753
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.16 E-value=2.2e-05 Score=62.53 Aligned_cols=124 Identities=8% Similarity=0.088 Sum_probs=85.7
Q ss_pred ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434 58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL 135 (238)
Q Consensus 58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~ 135 (238)
+.++.|+++++.+..+.... ....+++|+.|+++++ +++.++. +..+++|++|+++++ .+..+..
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~-------~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~---- 98 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATG-------IFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQH---- 98 (220)
T ss_dssp TTCSEEECCSSCCCEECCCC-------CGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCG----
T ss_pred CCCCEEEcCCCcCCccCchh-------hhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCH----
Confidence 46789999998866552211 1246899999999987 5777653 678999999999987 4444421
Q ss_pred cccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434 136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI 204 (238)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~ 204 (238)
..+..+++|++|++++. .++++.. ....+++|+.|+++++ +++.++...-....+|+.+
T Consensus 99 --------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 99 --------KMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp --------GGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEE
T ss_pred --------hHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEE
Confidence 34567899999999876 4666643 3456899999999987 5666643332223445444
No 119
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.12 E-value=4.1e-05 Score=72.82 Aligned_cols=131 Identities=17% Similarity=0.153 Sum_probs=94.8
Q ss_pred hhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcC-c-
Q 026434 32 LVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL-T- 107 (238)
Q Consensus 32 l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l-~- 107 (238)
+.++++.|+++++. +.. ....+.++++|+.|++++|. ...+..+ ....+++|+.|+++++ +++.+ +
T Consensus 22 lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~--------~f~~L~~L~~L~Ls~N-~l~~~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKE--------AFRNLPNLRILDLGSS-KIYFLHPD 91 (844)
T ss_dssp SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTT--------TTSSCTTCCEEECTTC-CCCEECTT
T ss_pred CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHH--------HhcCCCCCCEEECCCC-cCcccCHh
Confidence 55789999999874 333 34567889999999999997 6655322 2356899999999988 56665 2
Q ss_pred ccccCCCccEEEEecccccce-ecccccccccccccccccccccccceeeccccccccccCC--CCCCCCCccEEeEcCc
Q 026434 108 WLVFVQNLKKLRIEFCDDVEE-IIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGC 184 (238)
Q Consensus 108 ~~~~l~~L~~L~i~~C~~l~~-l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C 184 (238)
.+..+++|++|++.+|. +.. ++.. ..+..+++|++|+++++. ++++.. ....+++|+.|++.++
T Consensus 92 ~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCG-LSDAVLKD-----------GYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SSCSCSSCCCEECTTCC-CSSCCSTT-----------CCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred HccCCcccCEeeCcCCC-CCcccccC-----------ccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence 46789999999999884 332 2110 235678999999998764 444332 2456899999999987
Q ss_pred c
Q 026434 185 R 185 (238)
Q Consensus 185 ~ 185 (238)
.
T Consensus 159 ~ 159 (844)
T 3j0a_A 159 Q 159 (844)
T ss_dssp C
T ss_pred c
Confidence 4
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.08 E-value=9.7e-06 Score=74.01 Aligned_cols=56 Identities=11% Similarity=-0.043 Sum_probs=30.7
Q ss_pred CCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceE
Q 026434 9 HLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEM 73 (238)
Q Consensus 9 ~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i 73 (238)
+|+.|+++..... .+... +.++|+.|++.++. +.. ++ ..+++|+.|++++|.+..+
T Consensus 60 ~L~~L~Ls~n~L~---~lp~~--l~~~L~~L~Ls~N~-l~~-ip--~~l~~L~~L~Ls~N~l~~i 115 (571)
T 3cvr_A 60 QFSELQLNRLNLS---SLPDN--LPPQITVLEITQNA-LIS-LP--ELPASLEYLDACDNRLSTL 115 (571)
T ss_dssp TCSEEECCSSCCS---CCCSC--CCTTCSEEECCSSC-CSC-CC--CCCTTCCEEECCSSCCSCC
T ss_pred CccEEEeCCCCCC---ccCHh--HcCCCCEEECcCCC-Ccc-cc--cccCCCCEEEccCCCCCCc
Confidence 6667766432221 22221 23578888887763 232 33 4457778888777764433
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.07 E-value=1.1e-06 Score=75.93 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=8.8
Q ss_pred CCCccEEeEcCcc
Q 026434 173 FPKLKKIKVRGCR 185 (238)
Q Consensus 173 ~~~L~~L~i~~C~ 185 (238)
+++|+.|++++|.
T Consensus 273 ~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 273 NIGLQTLRLQYNE 285 (386)
T ss_dssp SCCCCEEECCSSC
T ss_pred CCCeEEEECcCCc
Confidence 5667777777664
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.04 E-value=1.4e-06 Score=75.25 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=21.5
Q ss_pred ccccceeeccccccccc-----cCCCC-CCCCCccEEeEcCccC
Q 026434 149 FAQLEYLTISWGINLKG-----VYPNP-LPFPKLKKIKVRGCRH 186 (238)
Q Consensus 149 ~p~L~~L~L~~~~~L~~-----i~~~~-~~~~~L~~L~i~~C~~ 186 (238)
+++|++|+|.++. +.. ++... ..+++|+.|++.+|+-
T Consensus 273 ~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 273 NIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp SCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 5666666666543 222 32222 2368888888888753
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.02 E-value=2.6e-05 Score=60.87 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=47.3
Q ss_pred ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434 58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL 135 (238)
Q Consensus 58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~ 135 (238)
++|+.|+++++.++.+. .....+++|+.|+++++ +++.++. +..+++|++|+++++ .+..+.+
T Consensus 31 ~~l~~L~L~~n~i~~ip---------~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~---- 95 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP---------KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPP---- 95 (193)
T ss_dssp TTCCEEECCSSCCCSCC---------GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCT----
T ss_pred CCCCEEECCCCcCchhH---------HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCH----
Confidence 35555655555533332 11234555666666554 3444432 345556666665554 2333211
Q ss_pred cccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcC
Q 026434 136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRG 183 (238)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~ 183 (238)
..+..+++|+.|+|.+. .++.++.. ...+++|+.|++.+
T Consensus 96 --------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 96 --------RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp --------TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred --------HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 22334555666665543 34444432 22345555555443
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.02 E-value=1.8e-05 Score=61.68 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=15.3
Q ss_pred CCCccEEEEecCCCCCcCcc--cccCCCccEEEEecc
Q 026434 89 FRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFC 123 (238)
Q Consensus 89 l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C 123 (238)
+++|+.|++++. +++.++. +..+++|++|+++++
T Consensus 77 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 77 ASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSS
T ss_pred cccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC
Confidence 445555555444 3444332 334455555555443
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.01 E-value=2e-05 Score=61.52 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=76.6
Q ss_pred hcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434 33 VSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV 110 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~ 110 (238)
..+++.|++.+.. +......+.++++|+.|+++++.++.+..+ ....+++|+.|++++. +++.++. +.
T Consensus 30 ~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~--------~f~~l~~L~~L~Ls~N-~l~~i~~~~f~ 99 (193)
T 2wfh_A 30 PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQ--------SFSNMTQLLTLILSYN-RLRCIPPRTFD 99 (193)
T ss_dssp CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCBCCTTTTT
T ss_pred CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHh--------HccCCCCCCEEECCCC-ccCEeCHHHhC
Confidence 3689999998864 233114678899999999999986655322 2346899999999987 6888764 67
Q ss_pred cCCCccEEEEecccccceecccccccccccccccccccccccceeecccc
Q 026434 111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG 160 (238)
Q Consensus 111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 160 (238)
.+++|++|++.++ .+..+.. ..+..+++|+.|++.+.
T Consensus 100 ~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 100 GLKSLRLLSLHGN-DISVVPE------------GAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCTTCCEEECCSS-CCCBCCT------------TTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-CCCeeCh------------hhhhcCccccEEEeCCC
Confidence 8899999999886 4444421 23456889999998754
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.00 E-value=4e-05 Score=65.61 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=82.8
Q ss_pred ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434 58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL 135 (238)
Q Consensus 58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~ 135 (238)
++++.|+++++.+..+..+... ..+++|+.|+++++ +++.++. +..+++|++|++.++ +++.+..
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~-------~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~---- 105 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTP-------TRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDE---- 105 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSS-------SCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECT----
T ss_pred CCCCEEECCCCCCCccChhhhh-------hcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCH----
Confidence 5789999999987766432221 15899999999987 6877753 678999999999986 4655532
Q ss_pred cccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCC
Q 026434 136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLN 193 (238)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~ 193 (238)
..+..+++|+.|+|.+.. ++.+.. ....+++|+.|+++++ +++.+|..
T Consensus 106 --------~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~ 154 (361)
T 2xot_A 106 --------FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVE 154 (361)
T ss_dssp --------TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGG
T ss_pred --------HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHH
Confidence 345678999999998763 566543 3456899999999886 56666643
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.00 E-value=7.7e-06 Score=74.65 Aligned_cols=148 Identities=10% Similarity=0.045 Sum_probs=70.3
Q ss_pred CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCccccc
Q 026434 8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQS 87 (238)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~ 87 (238)
.+|+.|+++..... .+. ...++|+.|++.++. +.. ++.+.+ +|+.|++++|.+..++.
T Consensus 80 ~~L~~L~Ls~N~l~---~ip---~~l~~L~~L~Ls~N~-l~~-ip~l~~--~L~~L~Ls~N~l~~lp~------------ 137 (571)
T 3cvr_A 80 PQITVLEITQNALI---SLP---ELPASLEYLDACDNR-LST-LPELPA--SLKHLDVDNNQLTMLPE------------ 137 (571)
T ss_dssp TTCSEEECCSSCCS---CCC---CCCTTCCEEECCSSC-CSC-CCCCCT--TCCEEECCSSCCSCCCC------------
T ss_pred CCCCEEECcCCCCc---ccc---cccCCCCEEEccCCC-CCC-cchhhc--CCCEEECCCCcCCCCCC------------
Confidence 45777776533222 222 234678888887763 232 333332 77777777776443321
Q ss_pred CCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccc--------ccccccccccccccccc-------
Q 026434 88 GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKL--------RDISEIIGSEHNFFAQL------- 152 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~--------~~~~~~~~~~~~~~p~L------- 152 (238)
.+++|+.|+++++ +++.++. .+++|++|++.++. +..+...... .....+ ..+ .++|
T Consensus 138 ~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~~l--p~~--~~~L~~~~~~L 209 (571)
T 3cvr_A 138 LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLESL--PAV--PVRNHHSEETE 209 (571)
T ss_dssp CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSC--CCC--C--------CC
T ss_pred cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCCch--hhH--HHhhhcccccc
Confidence 2445555555444 3444333 34445555544442 2221100000 000000 001 1144
Q ss_pred ceeeccccccccccCCCCCCCCCccEEeEcCccC
Q 026434 153 EYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 153 ~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~ 186 (238)
+.|++.++ .++.++.....+++|+.|++.+++-
T Consensus 210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 210 IFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred eEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 77777664 4666665555577888888877754
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.97 E-value=4.6e-07 Score=71.10 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=61.3
Q ss_pred chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc-cccCCCccEEEEecccccceecc
Q 026434 53 HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW-LVFVQNLKKLRIEFCDDVEEIIG 131 (238)
Q Consensus 53 ~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~l~~L~~L~i~~C~~l~~l~~ 131 (238)
.+.++++|+.|++++|.++.+. ....+++|+.|+++++ +++.++. ...+++|++|++.++ .+..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~----------~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l-- 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS----------SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASL-- 108 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC----------CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCH--
T ss_pred HHhcCCCCCEEECCCCCCcccc----------ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcC--
Confidence 4566777777777777644332 1234667777777776 4555553 234567777777766 33332
Q ss_pred cccccccccccccccccccccceeeccccccccccCC--CCCCCCCccEEeEcCccC
Q 026434 132 VDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGCRH 186 (238)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C~~ 186 (238)
..+..+++|+.|++.++. ++++.. ....+++|+.|++.+++-
T Consensus 109 ------------~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 109 ------------SGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ------------HHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ------------CccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 123356677777776542 332221 123467777777776643
No 129
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=2e-06 Score=74.14 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=22.5
Q ss_pred HHhhhcCchhhcceeEEEEeecCCCC-------C-cccc-hhhcccCCeEEEeecC
Q 026434 23 VQKFLKYPKLVSITQSVGVYQCRSPP-------F-NVFH-LAYMENLQELELEYCN 69 (238)
Q Consensus 23 l~~l~~~~~l~~~L~~L~l~~c~~l~-------~-~~~~-l~~l~~L~~L~i~~c~ 69 (238)
++.+.......++|+.|.|.+...-. . .+.. +..+|+|+.|.|++|.
T Consensus 128 ~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp HHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred HHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 44444444444567777665432100 0 1111 2445667777776653
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.92 E-value=2.8e-07 Score=72.37 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=76.9
Q ss_pred hcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434 33 VSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV 112 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l 112 (238)
.++|+.|++.++. +.. ++.+.++++|+.|++++|.+..+. .....+++|+.|+++++ +++.++.+..+
T Consensus 47 l~~L~~L~ls~n~-l~~-l~~~~~l~~L~~L~l~~n~l~~l~---------~~~~~~~~L~~L~L~~N-~l~~l~~~~~l 114 (198)
T 1ds9_A 47 LKACKHLALSTNN-IEK-ISSLSGMENLRILSLGRNLIKKIE---------NLDAVADTLEELWISYN-QIASLSGIEKL 114 (198)
T ss_dssp TTTCSEEECSEEE-ESC-CCCHHHHTTCCEEEEEEEEECSCS---------SHHHHHHHCSEEEEEEE-ECCCHHHHHHH
T ss_pred CCCCCEEECCCCC-Ccc-ccccccCCCCCEEECCCCCccccc---------chhhcCCcCCEEECcCC-cCCcCCccccC
Confidence 3689999998874 333 457888999999999999854442 11234678999999998 68888777888
Q ss_pred CCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434 113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI 161 (238)
Q Consensus 113 ~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 161 (238)
++|++|++.++ .+..+... ..+..+++|++|++.+++
T Consensus 115 ~~L~~L~l~~N-~i~~~~~~-----------~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 115 VNLRVLYMSNN-KITNWGEI-----------DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHSSEEEESEE-ECCCHHHH-----------HHHTTTTTCSEEEECSCH
T ss_pred CCCCEEECCCC-cCCchhHH-----------HHHhcCCCCCEEEecCCc
Confidence 99999999887 33332110 234568999999998764
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.88 E-value=7.1e-05 Score=58.22 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=75.7
Q ss_pred ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccc
Q 026434 58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKL 135 (238)
Q Consensus 58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~ 135 (238)
.+|+.|+++++.+..+.... ....+++|+.|+++++ +++.+. .+..+++|++|+++++ .+..+..
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~---- 95 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDG-------LFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISN---- 95 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSC-------SGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECS----
T ss_pred CCCCEEECCCCcCCccCCcc-------ccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCH----
Confidence 38999999988865553211 1346889999999987 577763 4678899999999886 4555432
Q ss_pred cccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCcc
Q 026434 136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~ 185 (238)
..+..+++|++|++++. +++.+.. ....+++|+.|++.+.+
T Consensus 96 --------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 96 --------KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp --------SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred --------HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 34566899999999875 4555533 34567899999987754
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=2.4e-05 Score=71.32 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=63.5
Q ss_pred cCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEecccccceecccccccc
Q 026434 59 NLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRD 137 (238)
Q Consensus 59 ~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~ 137 (238)
.|+.|++++|.++.+ +....+++|+.|+++++ +++.+| .++.+++|++|+++++ .+..+
T Consensus 442 ~L~~L~Ls~n~l~~l----------p~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~l-------- 501 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL----------CHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENV-------- 501 (567)
T ss_dssp TCSEEECTTSCCSSC----------CCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCC--------
T ss_pred CceEEEecCCCCCCC----------cCccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCC--------
Confidence 355555555553333 12345677777777776 566665 3567777777777765 33333
Q ss_pred cccccccccccccccceeecccccccccc--CCCCCCCCCccEEeEcCccCCCCCC
Q 026434 138 ISEIIGSEHNFFAQLEYLTISWGINLKGV--YPNPLPFPKLKKIKVRGCRHLKKLP 191 (238)
Q Consensus 138 ~~~~~~~~~~~~p~L~~L~L~~~~~L~~i--~~~~~~~~~L~~L~i~~C~~L~~lp 191 (238)
..+..+++|+.|+|++. .++++ +.....+++|+.|++++++ ++.+|
T Consensus 502 ------p~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 502 ------DGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp ------GGGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred ------cccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 23445777888877764 45555 3344567778888887764 44444
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.70 E-value=3.8e-05 Score=72.01 Aligned_cols=102 Identities=14% Similarity=0.035 Sum_probs=75.2
Q ss_pred cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccccC
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFV 112 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l 112 (238)
..|+.|+|.++.- ......+.++++|+.|++++|.+..++ .....+++|+.|+++++ +++.+| .+..+
T Consensus 224 ~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp---------~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l 292 (727)
T 4b8c_D 224 QLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLTELP---------AEIKNLSNLRVLDLSHN-RLTSLPAELGSC 292 (727)
T ss_dssp CCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCSCCC---------GGGGGGTTCCEEECTTS-CCSSCCSSGGGG
T ss_pred CCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCcccC---------hhhhCCCCCCEEeCcCC-cCCccChhhcCC
Confidence 5788888887753 221234668899999999999865552 22356899999999988 577776 46789
Q ss_pred CCccEEEEecccccceecccccccccccccccccccccccceeecccc
Q 026434 113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG 160 (238)
Q Consensus 113 ~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 160 (238)
++|++|++.++ .+..++ ..+..+++|+.|+|++.
T Consensus 293 ~~L~~L~L~~N-~l~~lp-------------~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTTLP-------------WEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TTCSEEECCSS-CCCCCC-------------SSTTSCTTCCCEECTTS
T ss_pred CCCCEEECCCC-CCCccC-------------hhhhcCCCccEEeCCCC
Confidence 99999999987 455442 34667889999988765
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.65 E-value=0.00026 Score=54.17 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=15.5
Q ss_pred CCCCccEEEEecCCCCCcCcc--cccCCCccEEEEec
Q 026434 88 GFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEF 122 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~ 122 (238)
.+++|+.|++++. +++.++. +..+++|++|++++
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 3445555555444 3444432 23444555554444
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.63 E-value=0.00026 Score=53.96 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=14.9
Q ss_pred cccccceeeccccccccccCCC-CCCCCCccEEeEcC
Q 026434 148 FFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRG 183 (238)
Q Consensus 148 ~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~ 183 (238)
.+++|++|+|++. +++.+... ...+++|+.|++.+
T Consensus 76 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 76 KLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCC
Confidence 3444555544433 23333332 22344555555443
No 136
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.63 E-value=0.00012 Score=62.95 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=69.9
Q ss_pred cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCC-------CCCcC
Q 026434 34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQ-------KAKDL 106 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~-------~L~~l 106 (238)
++|+.|.|.++.++. ++.+. +++|++|++..|.+..-.+... ....+|+|++|.++.+. .++.+
T Consensus 172 P~L~~L~L~g~~~l~--l~~~~-~~~L~~L~L~~~~l~~~~l~~l------~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLS--IGKKP-RPNLKSLEIISGGLPDSVVEDI------LGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp TTCCEEEEECCBTCB--CCSCB-CTTCSEEEEECSBCCHHHHHHH------HHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred CCCcEEEEeCCCCce--ecccc-CCCCcEEEEecCCCChHHHHHH------HHccCCCCcEEEEeccccccccchhHHHH
Confidence 478888887764432 22232 6788888887766321100000 01247788888875321 12222
Q ss_pred cc---cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc-----cCCCCCCCCCccE
Q 026434 107 TW---LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG-----VYPNPLPFPKLKK 178 (238)
Q Consensus 107 ~~---~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~-----i~~~~~~~~~L~~ 178 (238)
.. ...+|+|++|.+.+|.-..... ... .....+|+|++|+|+. ..+.. +......+++|+.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~-----~~l-----a~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~ 311 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVV-----EMF-----LESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKF 311 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHH-----HHH-----HHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSE
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHH-----HHH-----HhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceE
Confidence 21 1347888888887764221110 000 1123477888888854 34443 2222235678888
Q ss_pred EeEcCcc
Q 026434 179 IKVRGCR 185 (238)
Q Consensus 179 L~i~~C~ 185 (238)
|++++|.
T Consensus 312 L~L~~n~ 318 (362)
T 2ra8_A 312 INMKYNY 318 (362)
T ss_dssp EECCSBB
T ss_pred EECCCCc
Confidence 8887773
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.63 E-value=2.6e-06 Score=74.84 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=47.9
Q ss_pred CCccEEEEecCCCCCcC------cccccCCCccEEEEecccccceeccccccccccccccccc-ccccccceeecccccc
Q 026434 90 RSLNTVHVFYCQKAKDL------TWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEH-NFFAQLEYLTISWGIN 162 (238)
Q Consensus 90 ~~L~~L~i~~C~~L~~l------~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~-~~~p~L~~L~L~~~~~ 162 (238)
++|+.|++++|. +... .++..+++|++|+++++ .+..... .... ..+ ...++|++|+++++ .
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~----~~l~----~~l~~~~~~L~~L~L~~n-~ 381 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGV----RELC----QGLGQPGSVLRVLWLADC-D 381 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHH----HHHH----HHHTSTTCCCCEEECTTS-C
T ss_pred ccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccH----HHHH----HHHcCCCCceEEEECCCC-C
Confidence 577777777773 4442 12345677888877776 3322100 0000 001 12568888888877 3
Q ss_pred cc-----ccCCCCCCCCCccEEeEcCcc
Q 026434 163 LK-----GVYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 163 L~-----~i~~~~~~~~~L~~L~i~~C~ 185 (238)
++ .++.....+++|+.|++++|+
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 44 232222347889999998884
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.58 E-value=0.0006 Score=57.35 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=17.1
Q ss_pred cccccceeeccccccccccCCCC-CCCCCcc-EEeEcCccCCCCCC
Q 026434 148 FFAQLEYLTISWGINLKGVYPNP-LPFPKLK-KIKVRGCRHLKKLP 191 (238)
Q Consensus 148 ~~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~-~L~i~~C~~L~~lp 191 (238)
.+++|+.+.+.+ +++.|.... ..+++|+ .+.+.+ +++.++
T Consensus 248 ~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 248 QKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEEC
T ss_pred CCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEc
Confidence 344555555443 244444322 2344444 444444 444444
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.57 E-value=2.7e-06 Score=74.77 Aligned_cols=84 Identities=11% Similarity=0.110 Sum_probs=39.4
Q ss_pred ceeEEEEeecCCCCC-c----ccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcC---
Q 026434 35 ITQSVGVYQCRSPPF-N----VFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL--- 106 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~-~----~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l--- 106 (238)
+|++|++.+|. +.. . ...+..+++|++|++++|.+.......... .-....++|+.|++++| ++...
T Consensus 143 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~---~l~~~~~~L~~L~L~~n-~l~~~~~~ 217 (461)
T 1z7x_W 143 RLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ---GLKDSPCQLEALKLESC-GVTSDNCR 217 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH---HHHHSCCCCCEEECTTS-CCBTTHHH
T ss_pred cceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH---HHhcCCCCceEEEccCC-CCcHHHHH
Confidence 46666666653 221 1 112344566777776666522111000000 00012446777777766 34442
Q ss_pred --c-ccccCCCccEEEEecc
Q 026434 107 --T-WLVFVQNLKKLRIEFC 123 (238)
Q Consensus 107 --~-~~~~l~~L~~L~i~~C 123 (238)
+ .+..+++|++|++++|
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHhCCCccEEeccCC
Confidence 1 2345667777777665
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.45 E-value=0.00026 Score=54.22 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=53.7
Q ss_pred CCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccccc
Q 026434 89 FRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGV 166 (238)
Q Consensus 89 l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i 166 (238)
.++|+.|++++. +++.+++ +..+++|++|++++. ++..+.. .....+++|+.|+|++. .++.+
T Consensus 32 ~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~------------~~~~~l~~L~~L~L~~N-~l~~l 96 (174)
T 2r9u_A 32 PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPT------------GVFDKLTQLTQLDLNDN-HLKSI 96 (174)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccCh------------hHhCCcchhhEEECCCC-cccee
Confidence 467778887776 4666643 567788888888776 4554421 22346778888888764 56666
Q ss_pred CCC-CCCCCCccEEeEcCcc
Q 026434 167 YPN-PLPFPKLKKIKVRGCR 185 (238)
Q Consensus 167 ~~~-~~~~~~L~~L~i~~C~ 185 (238)
+.. ...+++|+.|++.+.+
T Consensus 97 ~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CTTTTTTCTTCSEEECCSSC
T ss_pred CHHHhccccCCCEEEeCCCC
Confidence 654 4457788888877654
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.36 E-value=0.00057 Score=57.75 Aligned_cols=87 Identities=22% Similarity=0.312 Sum_probs=61.7
Q ss_pred ccchhhcccCCeEEEee-cCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccc
Q 026434 51 VFHLAYMENLQELELEY-CNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVE 127 (238)
Q Consensus 51 ~~~l~~l~~L~~L~i~~-c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~ 127 (238)
++.+..+++|+.|++++ +.+..+..+. ...+++|+.|++++. +|+.++. +..+++|++|++++. ++.
T Consensus 24 ip~l~~~~~L~~L~l~~~n~l~~~~~~~--------~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~ 93 (347)
T 2ifg_A 24 LHHLPGAENLTELYIENQQHLQHLELRD--------LRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALE 93 (347)
T ss_dssp TTTSCSCSCCSEEECCSCSSCCEECGGG--------SCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCS
T ss_pred cCCCCCCCCeeEEEccCCCCCCCcChhH--------hccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccc
Confidence 44578888999999997 4488774322 346899999999987 6888753 578999999999875 555
Q ss_pred eecccccccccccccccccccccccceeecccc
Q 026434 128 EIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG 160 (238)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 160 (238)
.++. .....++ |+.|.|.+.
T Consensus 94 ~~~~------------~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 94 SLSW------------KTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CCCS------------TTTCSCC-CCEEECCSS
T ss_pred eeCH------------HHcccCC-ceEEEeeCC
Confidence 5432 1222233 888888653
No 142
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.36 E-value=2.5e-05 Score=66.82 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=9.1
Q ss_pred CCCCccEEeEcCcc
Q 026434 172 PFPKLKKIKVRGCR 185 (238)
Q Consensus 172 ~~~~L~~L~i~~C~ 185 (238)
.+++|+.|++++|.
T Consensus 251 ~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 251 SLKHLQTVYLDYDI 264 (362)
T ss_dssp TTTTCSEEEEEHHH
T ss_pred cCCCccEEEeccCC
Confidence 45667777777664
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.31 E-value=0.00048 Score=52.38 Aligned_cols=80 Identities=11% Similarity=0.046 Sum_probs=46.7
Q ss_pred ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434 58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL 135 (238)
Q Consensus 58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~ 135 (238)
++|+.|+++++.++.+..+ ....+++|+.|++++. +++.++. +..+++|++|++++. ++..+..
T Consensus 30 ~~l~~L~L~~N~i~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~---- 95 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPG--------VFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPR---- 95 (170)
T ss_dssp TTCSEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred CCCcEEEcCCCcCCccChh--------hhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCH----
Confidence 5677777777664444211 1234667777777765 5666653 356777777777665 3443321
Q ss_pred cccccccccccccccccceeeccc
Q 026434 136 RDISEIIGSEHNFFAQLEYLTISW 159 (238)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~L~~ 159 (238)
..+..+++|+.|+|.+
T Consensus 96 --------~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 96 --------GAFDNLKSLTHIWLLN 111 (170)
T ss_dssp --------TTTTTCTTCCEEECCS
T ss_pred --------HHhcCCCCCCEEEeCC
Confidence 2344566777777754
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.003 Score=53.01 Aligned_cols=32 Identities=28% Similarity=0.137 Sum_probs=13.0
Q ss_pred ccccceeeccccccccccCCCC-CCCCCccEEeE
Q 026434 149 FAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKV 181 (238)
Q Consensus 149 ~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i 181 (238)
+++|+.++|.+. +++.|+... ..+++|+.|++
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEEC
Confidence 344555444432 134443321 23444444444
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.11 E-value=0.0023 Score=53.93 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=60.0
Q ss_pred ccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434 86 QSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL 163 (238)
Q Consensus 86 ~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L 163 (238)
...+.+|+.|++++..+++.++. +..+++|+.|++++. ++..+++ ..+..+++|+.|+|++. +|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N-~l 92 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP------------DAFHFTPRLSRLNLSFN-AL 92 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT------------TGGGSCSCCCEEECCSS-CC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH------------HHhcCCcCCCEEeCCCC-cc
Confidence 45677889999987668888763 667889999998876 5666542 34456888899888863 57
Q ss_pred cccCCCCCCCCCccEEeEcCc
Q 026434 164 KGVYPNPLPFPKLKKIKVRGC 184 (238)
Q Consensus 164 ~~i~~~~~~~~~L~~L~i~~C 184 (238)
+.++.......+|+.|++.+.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSS
T ss_pred ceeCHHHcccCCceEEEeeCC
Confidence 777654433334888877654
No 146
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.01 E-value=7.1e-05 Score=63.98 Aligned_cols=135 Identities=10% Similarity=0.022 Sum_probs=73.2
Q ss_pred ceeEEEEeecCCCCC-cccchhhc-----ccCCeEEEeecCCceEEecccCccCcccccCC-CCccEEEEecCCCCCcCc
Q 026434 35 ITQSVGVYQCRSPPF-NVFHLAYM-----ENLQELELEYCNLEEMKIDSTDEVKKLFQSGF-RSLNTVHVFYCQKAKDLT 107 (238)
Q Consensus 35 ~L~~L~l~~c~~l~~-~~~~l~~l-----~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l-~~L~~L~i~~C~~L~~l~ 107 (238)
+|+.|++.+|. +.. ....+..+ ++|++|++++|.+......... .....+ ++|+.|++++|. +....
T Consensus 52 ~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N~-l~~~~ 125 (362)
T 3goz_A 52 SVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV----KTLAAIPFTITVLDLGWND-FSSKS 125 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH----HHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred ceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH----HHHHhCCCCccEEECcCCc-CCcHH
Confidence 67888887773 222 22233333 7788888888774322111000 001223 678888888873 65543
Q ss_pred c------ccc-CCCccEEEEecccccceeccccccccccccccccccccc-ccceeeccccccccccCC-----CCCCC-
Q 026434 108 W------LVF-VQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFA-QLEYLTISWGINLKGVYP-----NPLPF- 173 (238)
Q Consensus 108 ~------~~~-l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p-~L~~L~L~~~~~L~~i~~-----~~~~~- 173 (238)
. +.. .++|++|++++|. +... ...... ..+..++ +|++|+++++ .++.... ....+
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~----~~~~l~----~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~ 195 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGND-LGIK----SSDELI----QILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIP 195 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSC-GGGS----CHHHHH----HHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCCceeEEEccCCc-CCHH----HHHHHH----HHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCC
Confidence 2 223 3588888888763 2211 000000 1223344 8999999887 3444322 11234
Q ss_pred CCccEEeEcCcc
Q 026434 174 PKLKKIKVRGCR 185 (238)
Q Consensus 174 ~~L~~L~i~~C~ 185 (238)
++|+.|++++|.
T Consensus 196 ~~L~~L~Ls~N~ 207 (362)
T 3goz_A 196 ASVTSLDLSANL 207 (362)
T ss_dssp TTCCEEECTTSC
T ss_pred CCCCEEECCCCC
Confidence 489999999885
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.99 E-value=0.00021 Score=61.65 Aligned_cols=136 Identities=11% Similarity=0.061 Sum_probs=74.3
Q ss_pred cceeEEEEeecCCCCC-cccch-hhcccCCeEEEeecCCceEEecccCccCcccc-cCCCCccEEEEecCCCCCcCc---
Q 026434 34 SITQSVGVYQCRSPPF-NVFHL-AYMENLQELELEYCNLEEMKIDSTDEVKKLFQ-SGFRSLNTVHVFYCQKAKDLT--- 107 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~~l-~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~-~~l~~L~~L~i~~C~~L~~l~--- 107 (238)
.+|+.|++.+|. +.. .+..+ ..+++|+.|++++|.+......... ... ...++|+.|++++| .+.+..
T Consensus 101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~----~~L~~~~~~L~~L~Ls~n-~l~~~~~~~ 174 (372)
T 3un9_A 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR----DLLLHDQCQITTLRLSNN-PLTAAGVAV 174 (372)
T ss_dssp SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH----HHHHSTTCCCCEEECCSS-CCHHHHHHH
T ss_pred CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH----HHHHhcCCccceeeCCCC-CCChHHHHH
Confidence 467777777764 222 12222 3456778888887764322111000 000 13567888888888 454421
Q ss_pred ---ccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC-----CCCCCCCccEE
Q 026434 108 ---WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-----NPLPFPKLKKI 179 (238)
Q Consensus 108 ---~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-----~~~~~~~L~~L 179 (238)
.+...++|++|++++|. +... ...... ..+...++|+.|+|+++. +..... .....++|+.|
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~-l~~~----g~~~L~----~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L 244 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTG-LGDE----GLELLA----AQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELL 244 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSS-CHHH----HHHHHH----HHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHhcCCCcCEEeCCCCC-CCcH----HHHHHH----HHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEE
Confidence 23467888888888774 3221 000000 233445789999998763 332211 11235889999
Q ss_pred eEcCcc
Q 026434 180 KVRGCR 185 (238)
Q Consensus 180 ~i~~C~ 185 (238)
++++++
T Consensus 245 ~Ls~N~ 250 (372)
T 3un9_A 245 HLYFNE 250 (372)
T ss_dssp ECTTSS
T ss_pred eccCCC
Confidence 999885
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.47 E-value=0.00035 Score=60.25 Aligned_cols=133 Identities=12% Similarity=0.031 Sum_probs=80.6
Q ss_pred hcceeEEEEeecCCCCC-cccchhh-----cccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcC
Q 026434 33 VSITQSVGVYQCRSPPF-NVFHLAY-----MENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL 106 (238)
Q Consensus 33 ~~~L~~L~l~~c~~l~~-~~~~l~~-----l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 106 (238)
.++++.|++.+|. +.. ....+.. .++|+.|++++|.+........ ...+++|+.|++++| ++.+.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-------~~~L~~L~~L~Ls~n-~l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-------LPVFLRARKLGLQLN-SLGPE 141 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-------HHHHHTEEEEECCSS-CCCHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-------HHHHHhccHhhcCCC-CCCHH
Confidence 4678999998885 332 2222332 2689999999988432111110 123568999999998 56553
Q ss_pred c--c----c-ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc-----cCCCCCCCC
Q 026434 107 T--W----L-VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG-----VYPNPLPFP 174 (238)
Q Consensus 107 ~--~----~-~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~-----i~~~~~~~~ 174 (238)
. . + ...++|++|++++|. +... ...... ..+...++|++|+|+++. +.. +.......+
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~----~~~~l~----~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNP-LTAA----GVAVLM----EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNR 211 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSC-CHHH----HHHHHH----HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHhcCCccceeeCCCCC-CChH----HHHHHH----HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCC
Confidence 2 1 1 246889999999984 3221 000000 223457899999998764 332 121223457
Q ss_pred CccEEeEcCc
Q 026434 175 KLKKIKVRGC 184 (238)
Q Consensus 175 ~L~~L~i~~C 184 (238)
+|+.|++++|
T Consensus 212 ~L~~L~Ls~N 221 (372)
T 3un9_A 212 QLQELNVAYN 221 (372)
T ss_dssp CCCEEECCSS
T ss_pred CcCeEECCCC
Confidence 8999999987
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.97 E-value=0.011 Score=48.61 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=6.2
Q ss_pred cccCCeEEEeecC
Q 026434 57 MENLQELELEYCN 69 (238)
Q Consensus 57 l~~L~~L~i~~c~ 69 (238)
+++|+.|+++++.
T Consensus 169 l~~L~~L~Ls~N~ 181 (267)
T 3rw6_A 169 IPELLSLNLSNNR 181 (267)
T ss_dssp CTTCCEEECTTSC
T ss_pred CCCCCEEECCCCC
Confidence 3444555544444
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.72 E-value=0.21 Score=43.21 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=26.8
Q ss_pred hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEe
Q 026434 54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIE 121 (238)
Q Consensus 54 l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~ 121 (238)
+.++++|+.+.+.++.++.+.... ....+|+.+.+.. +++.+. ....+++|+.+.+.
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~a---------F~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPAST---------FVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTT---------TTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECC
T ss_pred hhCcccCCeeecCCCcceEechhh---------EeecccCEEEeCC--chheehhhHhhCCCCCCEEecC
Confidence 455566666666554444442111 1134566665542 344432 12345556655554
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.86 E-value=3 Score=35.79 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=31.1
Q ss_pred cccccccceeeccccccccccCCCCC-CCCCccEEeEcCccCCCCCCCCCCCCC-CcceEEEchhh
Q 026434 146 HNFFAQLEYLTISWGINLKGVYPNPL-PFPKLKKIKVRGCRHLKKLPLNSSSAK-ERRVVIEGSKK 209 (238)
Q Consensus 146 ~~~~p~L~~L~L~~~~~L~~i~~~~~-~~~~L~~L~i~~C~~L~~lp~~~~~~~-~~L~~~~~~~~ 209 (238)
...+++|+.+.|.+ +++.|..... .+ +|+.+.+.+. .+..++...-... ..+..+.-+..
T Consensus 319 F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 34456777777743 4666655432 34 7888888764 3344443322222 34545543333
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.60 E-value=0.099 Score=42.76 Aligned_cols=60 Identities=15% Similarity=0.067 Sum_probs=36.7
Q ss_pred CCCCccEEEEecCCCCCcCccc----ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434 88 GFRSLNTVHVFYCQKAKDLTWL----VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI 161 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~~~----~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 161 (238)
.+++|+.|++++. ++..+..+ ..+++|+.|++++. ++..+-. . ..+..+ +|++|.|.+.|
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~------l-----~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE------L-----DKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG------G-----GGGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchh------h-----hhcccC-CcceEEccCCc
Confidence 4778888888775 57766533 36888888888764 3333200 0 122223 77888877665
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=90.62 E-value=0.029 Score=43.04 Aligned_cols=113 Identities=11% Similarity=-0.015 Sum_probs=61.9
Q ss_pred cceeEEEEeecCCCCC-ccc----chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcC--
Q 026434 34 SITQSVGVYQCRSPPF-NVF----HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL-- 106 (238)
Q Consensus 34 ~~L~~L~l~~c~~l~~-~~~----~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l-- 106 (238)
+.|++|++.+|..+.. ... .+...++|++|++++|.+..--..... ......++|+.|++++| .+.+-
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~----~~L~~n~~L~~L~L~~N-~i~~~g~ 110 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA----EMLKVNNTLKSLNVESN-FISGSGI 110 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH----HHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH----HHHHhCCCcCEEECcCC-cCCHHHH
Confidence 5788898888744443 221 244567888898888873321000000 01123467888888887 45552
Q ss_pred ----cccccCCCccEEEE--ecccccceecccccccccccccccccccccccceeecccc
Q 026434 107 ----TWLVFVQNLKKLRI--EFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG 160 (238)
Q Consensus 107 ----~~~~~l~~L~~L~i--~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 160 (238)
..+...++|++|++ .++ .+.. ....... ..+...+.|++|+|..+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~----~g~~~l~----~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGN----NVEMEIA----NMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCH----HHHHHHH----HHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCH----HHHHHHH----HHHHhCCCcCEEeccCC
Confidence 13456678888888 444 2221 1100000 23334567888888755
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=90.45 E-value=0.023 Score=43.61 Aligned_cols=117 Identities=14% Similarity=0.030 Sum_probs=64.0
Q ss_pred hhhcccCCeEEEeec-CCceEEecccCccCcccccCCCCccEEEEecCCCCCcC------cccccCCCccEEEEeccccc
Q 026434 54 LAYMENLQELELEYC-NLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL------TWLVFVQNLKKLRIEFCDDV 126 (238)
Q Consensus 54 l~~l~~L~~L~i~~c-~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l------~~~~~l~~L~~L~i~~C~~l 126 (238)
+...++|++|++++| .+..-.+... .......++|+.|++++| .+.+- ..+...++|++|++++|. +
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l----~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i 105 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKAC----AEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-I 105 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHH----HHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-C
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHH----HHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-C
Confidence 456688999999988 5432110000 011223578899999887 45542 123456789999998873 2
Q ss_pred ceecccccccccccccccccccccccceeec--cccccccc-----cCCCCCCCCCccEEeEcCcc
Q 026434 127 EEIIGVDKLRDISEIIGSEHNFFAQLEYLTI--SWGINLKG-----VYPNPLPFPKLKKIKVRGCR 185 (238)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L--~~~~~L~~-----i~~~~~~~~~L~~L~i~~C~ 185 (238)
. ........ ..+...++|++|+| .+. .+.. +.......++|+.|++.+|.
T Consensus 106 ~----~~g~~~l~----~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 S----GSGILALV----EALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp C----HHHHHHHH----HGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred C----HHHHHHHH----HHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 1 11100000 23344568899998 433 3332 21111234778888887663
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=71.10 E-value=16 Score=30.75 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=16.3
Q ss_pred cccccceeeccccccccccCCCC-CCCCCccEEeE
Q 026434 148 FFAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKV 181 (238)
Q Consensus 148 ~~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i 181 (238)
.+.+|+.+.|.+ +++.|.... ..+.+|+.+.|
T Consensus 309 ~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 309 GCISLKSIDIPE--GITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEE
Confidence 345566665542 355554432 23456666665
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=62.80 E-value=38 Score=28.28 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=15.0
Q ss_pred cccccceeeccccccccccCCCC-CCCCCccEEeEc
Q 026434 148 FFAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKVR 182 (238)
Q Consensus 148 ~~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~ 182 (238)
.+.+|+.+.|.+ +++.|.... ..+.+|+.+++.
T Consensus 332 ~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 332 GCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred CCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence 344555555531 344443322 234555555543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=62.02 E-value=17 Score=30.47 Aligned_cols=77 Identities=21% Similarity=0.187 Sum_probs=44.6
Q ss_pred CCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc
Q 026434 88 GFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG 165 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 165 (238)
.+.+|+.+.+.+ +++.+.. ...+.+|+.+.+. ..++.+-. .....+.+|+.+.+.. +++.
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~------------~aF~~c~~L~~i~lp~--~l~~ 356 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP--YLVEEIGK------------RSFRGCTSLSNINFPL--SLRK 356 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC--TTCCEECT------------TTTTTCTTCCEECCCT--TCCE
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeC--CcccEEhH------------HhccCCCCCCEEEECc--cccE
Confidence 456788887754 4555432 3456777777664 23444311 2334567788777753 3677
Q ss_pred cCCCC-CCCCCccEEeEc
Q 026434 166 VYPNP-LPFPKLKKIKVR 182 (238)
Q Consensus 166 i~~~~-~~~~~L~~L~i~ 182 (238)
|.... ..+++|+.+++.
T Consensus 357 I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECTTTBTTCTTCCEEEEE
T ss_pred ehHHHhhCCCCCCEEEEC
Confidence 76543 346778877774
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=58.69 E-value=39 Score=27.92 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=5.3
Q ss_pred CCCccEEEEe
Q 026434 89 FRSLNTVHVF 98 (238)
Q Consensus 89 l~~L~~L~i~ 98 (238)
..+|+.+.+.
T Consensus 239 ~~~L~~i~lp 248 (379)
T 4h09_A 239 MKALDEIAIP 248 (379)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEcC
Confidence 4455555553
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=48.23 E-value=49 Score=27.59 Aligned_cols=79 Identities=13% Similarity=0.049 Sum_probs=45.1
Q ss_pred ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCC-CCCCCccEEeEcCccCCC
Q 026434 110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKVRGCRHLK 188 (238)
Q Consensus 110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~~C~~L~ 188 (238)
..+.+|+.+.+.+ +++.+-. .....+.+|+.+.|.+ +++.|.... ..+.+|+.+.+.. +++
T Consensus 294 ~~~~~L~~i~l~~--~i~~I~~------------~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~ 355 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVKFIGE------------EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLR 355 (394)
T ss_dssp TTCTTCCEEEECT--TCCEECT------------TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCC
T ss_pred ccccccccccccc--ccceech------------hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--ccc
Confidence 3566777776642 3444311 2334567888888753 467776543 3467788887743 366
Q ss_pred CCCCCCCCCCCcceEEEc
Q 026434 189 KLPLNSSSAKERRVVIEG 206 (238)
Q Consensus 189 ~lp~~~~~~~~~L~~~~~ 206 (238)
.++...=....+|+.+.-
T Consensus 356 ~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVEL 373 (394)
T ss_dssp EECTTTBTTCTTCCEEEE
T ss_pred EehHHHhhCCCCCCEEEE
Confidence 665443333456666643
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=47.07 E-value=1.2e+02 Score=24.88 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=16.6
Q ss_pred CCCCccEEEEecCCCCCcCcc--cccCCCccEEEEe
Q 026434 88 GFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIE 121 (238)
Q Consensus 88 ~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~ 121 (238)
.+.+|+.+.+.. +++.+.. ...+++|+.+.+.
T Consensus 261 ~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 261 NCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp TCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEEC
T ss_pred eeehhccccccc--cceecccccccccccccccccc
Confidence 345666666643 3444331 2345666666554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=34.29 E-value=45 Score=23.28 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=7.8
Q ss_pred cCCeEEEeecCCceE
Q 026434 59 NLQELELEYCNLEEM 73 (238)
Q Consensus 59 ~L~~L~i~~c~l~~i 73 (238)
+|+.|+++++.++.+
T Consensus 32 ~l~~L~Ls~N~l~~l 46 (130)
T 3rfe_A 32 DTTELVLTGNNLTAL 46 (130)
T ss_dssp TCSEEECTTSCCSSC
T ss_pred CCCEEECCCCcCCcc
Confidence 455555555554444
Done!