Query 026435
Match_columns 238
No_of_seqs 121 out of 433
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:59:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 9.1E-53 2E-57 367.6 21.5 206 30-235 20-229 (230)
2 PF02453 Reticulon: Reticulon; 100.0 2.1E-37 4.6E-42 256.1 -7.5 163 53-215 1-169 (169)
3 PF04842 DUF639: Plant protein 97.2 0.0042 9.2E-08 62.1 12.2 162 52-233 505-676 (683)
4 KOG1792 Reticulon [Intracellul 93.9 0.26 5.6E-06 43.7 7.5 79 145-223 42-143 (230)
5 PF08372 PRT_C: Plant phosphor 92.8 0.83 1.8E-05 38.2 8.5 66 133-198 72-137 (156)
6 PF06398 Pex24p: Integral pero 92.4 1.6 3.4E-05 40.5 10.8 22 52-73 31-52 (359)
7 PF08372 PRT_C: Plant phosphor 87.4 0.081 1.8E-06 44.2 -2.0 63 9-74 39-106 (156)
8 PF10112 Halogen_Hydrol: 5-bro 67.1 42 0.00092 28.4 8.5 72 159-231 15-97 (199)
9 PF01484 Col_cuticle_N: Nemato 61.3 33 0.00071 22.5 5.4 34 185-218 15-51 (53)
10 PF01594 UPF0118: Domain of un 59.9 1.3E+02 0.0028 26.8 12.4 57 165-221 131-188 (327)
11 COG0053 MMT1 Predicted Co/Zn/C 58.6 1.2E+02 0.0026 27.7 10.3 117 86-203 83-209 (304)
12 PF10256 Erf4: Golgin subfamil 55.9 93 0.002 24.0 8.0 20 123-146 30-49 (118)
13 KOG3488 Dolichol phosphate-man 55.7 24 0.00052 25.8 4.1 37 144-180 37-73 (81)
14 PF02453 Reticulon: Reticulon; 50.3 5.8 0.00013 32.1 0.2 23 52-74 99-121 (169)
15 KOG0058 Peptide exporter, ABC 47.6 1.6E+02 0.0035 30.4 10.0 75 127-215 254-328 (716)
16 COG5038 Ca2+-dependent lipid-b 45.7 28 0.0006 37.7 4.3 79 65-149 158-236 (1227)
17 KOG1726 HVA22/DP1 gene product 43.6 2.4E+02 0.0051 25.1 10.9 31 196-226 94-124 (225)
18 PF07234 DUF1426: Protein of u 40.4 1.8E+02 0.0038 22.7 7.1 38 152-195 5-42 (117)
19 COG3887 Predicted signaling pr 39.6 2.8E+02 0.0061 28.3 10.0 58 170-231 30-87 (655)
20 PF13198 DUF4014: Protein of u 38.3 1.1E+02 0.0024 22.4 5.2 33 183-215 36-68 (72)
21 PF04842 DUF639: Plant protein 35.5 5.1E+02 0.011 26.8 11.2 29 139-167 499-527 (683)
22 PRK09579 multidrug efflux prot 33.2 6.4E+02 0.014 27.1 14.7 41 185-225 475-521 (1017)
23 PHA02677 hypothetical protein; 30.0 1.2E+02 0.0025 23.9 4.5 33 177-209 5-37 (108)
24 KOG2735 Phosphatidylserine syn 29.8 3.6E+02 0.0077 26.2 8.6 68 12-80 6-81 (466)
25 PF00873 ACR_tran: AcrB/AcrD/A 28.1 7.5E+02 0.016 26.3 15.6 68 148-225 449-524 (1021)
26 KOG1889 Putative phosphoinosit 27.8 1.6E+02 0.0035 29.6 6.1 81 40-120 486-576 (579)
27 PRK06433 NADH dehydrogenase su 27.6 1.1E+02 0.0024 23.0 4.0 47 56-102 22-72 (88)
28 PF13677 MotB_plug: Membrane M 27.0 1.5E+02 0.0032 20.3 4.3 27 172-198 19-45 (58)
29 PRK11677 hypothetical protein; 24.9 3.2E+02 0.0068 22.2 6.5 8 198-205 48-55 (134)
30 KOG3415 Putative Rab5-interact 23.6 3.4E+02 0.0074 21.8 6.2 13 53-65 41-53 (129)
31 PF11696 DUF3292: Protein of u 23.1 2.5E+02 0.0055 28.7 6.7 48 122-169 87-138 (642)
32 COG2443 Sss1 Preprotein transl 22.7 3E+02 0.0064 19.7 5.2 31 151-181 29-60 (65)
33 PRK04897 heat shock protein Ht 22.3 2.5E+02 0.0055 25.4 6.1 22 58-79 6-27 (298)
34 PF06363 Picorna_P3A: Picornav 21.9 3.8E+02 0.0082 20.7 6.4 50 122-183 41-90 (100)
35 PF12732 YtxH: YtxH-like prote 21.8 3E+02 0.0064 19.4 5.8 40 185-224 14-53 (74)
36 TIGR02831 spo_II_M stage II sp 21.3 5.2E+02 0.011 22.0 9.5 44 156-199 71-116 (200)
37 PF06881 Elongin_A: RNA polyme 21.3 1.5E+02 0.0033 22.7 3.9 33 190-222 64-96 (109)
38 COG2274 SunT ABC-type bacterio 20.9 9.4E+02 0.02 24.9 14.5 71 143-213 260-336 (709)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-53 Score=367.62 Aligned_cols=206 Identities=39% Similarity=0.705 Sum_probs=200.3
Q ss_pred ccCCCccCCCCCCccccccCCCcccceeecccccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 026435 30 AGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAA 109 (238)
Q Consensus 30 ~~~~~~~~~~r~~~v~~~lggg~vaDlLlWrd~~~S~~vf~~~t~~~~L~~~~~~sliSvv~~i~l~~l~~lFl~~~~~~ 109 (238)
..++.+|+|+|++|+|+++|||+++|+++|||++.||++|++++++|++|+..+|+.++++|+++++.+.+.|.|.+...
T Consensus 20 ~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~ 99 (230)
T KOG1792|consen 20 AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVT 99 (230)
T ss_pred ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhcc-CCC--CCC-ceeecHHHHHHHHHHHHHHHHHHHHHHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026435 110 FRNK-QLE--SLP-ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGT 185 (238)
Q Consensus 110 ~~~r-~~~--~~p-~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~ 185 (238)
+++| ++| ..| ++++|||.+++.+..++.++|+.+.++|++++|+|+++++|++++||++|++|+|||++|++|+|+
T Consensus 100 ~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~ 179 (230)
T KOG1792|consen 100 FLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGL 179 (230)
T ss_pred HHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8888 556 688 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 026435 186 LLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKD 235 (238)
Q Consensus 186 v~~FTvP~lYe~yq~~ID~~v~~~~~~~~~~y~~~~~kv~~kip~~~~~~ 235 (238)
+++||+|.+||+|||+||++++++.++.+++|+++|+|+++|||+++.++
T Consensus 180 v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~ 229 (230)
T KOG1792|consen 180 VLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK 229 (230)
T ss_pred HHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence 99999999999999999999999999999999999999999999988764
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=2.1e-37 Score=256.12 Aligned_cols=163 Identities=31% Similarity=0.515 Sum_probs=47.8
Q ss_pred ccceeecccccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCCceeecHH
Q 026435 53 TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQL------ESLPELEVSEE 126 (238)
Q Consensus 53 vaDlLlWrd~~~S~~vf~~~t~~~~L~~~~~~sliSvv~~i~l~~l~~lFl~~~~~~~~~r~~------~~~p~~~isee 126 (238)
|+|+|+||||+.||.+|++++++|++++++++|++|++|+++++.+++.+++......+++.+ ++.++.+++||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 689999999999999999999999999999999999999999999999998888777777654 33447899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchhHHHHHH
Q 026435 127 MVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYC 206 (238)
Q Consensus 127 ~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~yq~~ID~~v 206 (238)
.++++++.+.+.+|..++.+|+++.++|+..+++++++||+++++|+++|++||++++++++||+|.+||+||++||+++
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~ 160 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV 160 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 026435 207 GMIHKSISQ 215 (238)
Q Consensus 207 ~~~~~~~~~ 215 (238)
+++++++||
T Consensus 161 ~~~~~~~~k 169 (169)
T PF02453_consen 161 AKVKEKVKK 169 (169)
T ss_dssp ---------
T ss_pred HHHHHHhcC
Confidence 999998875
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=97.23 E-value=0.0042 Score=62.11 Aligned_cols=162 Identities=13% Similarity=0.135 Sum_probs=102.5
Q ss_pred cccceeecccccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCCCC-ce
Q 026435 52 RTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNK---------QLESLP-EL 121 (238)
Q Consensus 52 ~vaDlLlWrd~~~S~~vf~~~t~~~~L~~~~~~sliSvv~~i~l~~l~~lFl~~~~~~~~~r---------~~~~~p-~~ 121 (238)
.+-++..|+||.+|...++.... .++ ...+.-+.-..++.+++..+|....+..++ +|+++. +-
T Consensus 505 ~~~~l~~We~P~kt~~Fl~~~~~--iI~----r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEq 578 (683)
T PF04842_consen 505 WLQKLASWEEPLKTLVFLALFLY--IIY----RGWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQ 578 (683)
T ss_pred HHHHHhhccCcchhHHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHH
Confidence 34588999999999555444333 222 111222222233333344466444322222 222221 22
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchhH
Q 026435 122 EVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEAR 201 (238)
Q Consensus 122 ~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~yq~~ 201 (238)
.+.-.....-++......|=++-++|.|++...+..+-++++.|..++.+-.++.+--++.+.++-.||-..=+.+
T Consensus 579 ilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr---- 654 (683)
T PF04842_consen 579 ILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR---- 654 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch----
Confidence 3444444455667777889999999999999999999999999999999999999999999999999986433211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026435 202 VDRYCGMIHKSISQHYKVVDENVISRIPRTLS 233 (238)
Q Consensus 202 ID~~v~~~~~~~~~~y~~~~~kv~~kip~~~~ 233 (238)
.-.++..+++++.| ..||-+|.
T Consensus 655 --~s~er~~RRlrEWW--------~sIPAaPV 676 (683)
T PF04842_consen 655 --ESSERFNRRLREWW--------DSIPAAPV 676 (683)
T ss_pred --hhHHHHHHHHHHHH--------hhCCccce
Confidence 12345555566655 35777765
No 4
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=0.26 Score=43.71 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=66.7
Q ss_pred HHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhc-----------------------hhH
Q 026435 145 MAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRF-----------------------EAR 201 (238)
Q Consensus 145 ~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~y-----------------------q~~ 201 (238)
...++++|||.+.++.++++..++-.+-.+++..++...+.+++++++.+|.++ |+.
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~ 121 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF 121 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence 578999999999999999999988888888898888888888888888777665 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026435 202 VDRYCGMIHKSISQHYKVVDEN 223 (238)
Q Consensus 202 ID~~v~~~~~~~~~~y~~~~~k 223 (238)
++++...+..++|....++++-
T Consensus 122 ~~~~a~~~~~~in~~l~~l~~i 143 (230)
T KOG1792|consen 122 VLALASSLRVEINQALSELRDI 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887777654
No 5
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=92.79 E-value=0.83 Score=38.20 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhc
Q 026435 133 ASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRF 198 (238)
Q Consensus 133 ~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~y 198 (238)
+.+...+....+.++.++.++|+..|..+++++++++++-.+..+..++++..+-.++=|++=..+
T Consensus 72 Q~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~ 137 (156)
T PF08372_consen 72 QNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL 137 (156)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence 334445566678999999999999999999999999988888888888888888888888776543
No 6
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=92.37 E-value=1.6 Score=40.51 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=16.2
Q ss_pred cccceeecccccchhHHHHHHH
Q 026435 52 RTADVLLWKRRRVSFGVIVVAT 73 (238)
Q Consensus 52 ~vaDlLlWrd~~~S~~vf~~~t 73 (238)
.+.++++|+|+..+-..+...+
T Consensus 31 ~vl~il~W~~p~~t~~~L~l~t 52 (359)
T PF06398_consen 31 RVLRILTWTNPDYTLSFLLLYT 52 (359)
T ss_pred HHHHeEEeCCCCcchHHHHHHH
Confidence 4588999999998855544444
No 7
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=87.42 E-value=0.081 Score=44.22 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=43.1
Q ss_pred cccccCCCcccccccccCCccccCCCccCCCCCCccccccC-----CCcccceeecccccchhHHHHHHHH
Q 026435 9 DIVDRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMG-----GGRTADVLLWKRRRVSFGVIVVATV 74 (238)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~lg-----gg~vaDlLlWrd~~~S~~vf~~~t~ 74 (238)
|..|.+-|--.| +-++.+...+..|+..--..+..++| |.++..++.||||..|+....+..+
T Consensus 39 deldEEfD~~ps---~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv 106 (156)
T PF08372_consen 39 DELDEEFDTFPS---SRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLV 106 (156)
T ss_pred chhhhhhccccc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHH
Confidence 444554454443 33555666676777766667777787 6799999999999999776554443
No 8
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=67.07 E-value=42 Score=28.42 Aligned_cols=72 Identities=22% Similarity=0.253 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026435 159 FQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARV-----------DRYCGMIHKSISQHYKVVDENVISR 227 (238)
Q Consensus 159 lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~yq~~I-----------D~~v~~~~~~~~~~y~~~~~kv~~k 227 (238)
.-+++..|+++++|.-.+++--+.+|.++.+.+.....+.+..- .+++....++.++++++++ +...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~-~~~~~ 93 (199)
T PF10112_consen 15 VLIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIE-KAIKR 93 (199)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 33455666677766656666666666666665555544443222 2345555566666666664 34556
Q ss_pred CCCC
Q 026435 228 IPRT 231 (238)
Q Consensus 228 ip~~ 231 (238)
|+..
T Consensus 94 i~~~ 97 (199)
T PF10112_consen 94 IRDL 97 (199)
T ss_pred cCCH
Confidence 6654
No 9
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=61.32 E-value=33 Score=22.46 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=21.4
Q ss_pred HHHHHhhhHHHhh---chhHHHHHHHHHHHHHHHHHH
Q 026435 185 TLLSITVPALYSR---FEARVDRYCGMIHKSISQHYK 218 (238)
Q Consensus 185 ~v~~FTvP~lYe~---yq~~ID~~v~~~~~~~~~~y~ 218 (238)
+.+++++|.+|.. -|++++.-++..+...++.|+
T Consensus 15 ~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~W~ 51 (53)
T PF01484_consen 15 LSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDAWN 51 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999964 344555555566666555554
No 10
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=59.87 E-value=1.3e+02 Score=26.85 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=22.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchhHHHHHHHHH-HHHHHHHHHHHH
Q 026435 165 LWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMI-HKSISQHYKVVD 221 (238)
Q Consensus 165 L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~yq~~ID~~v~~~-~~~~~~~y~~~~ 221 (238)
-++.+.+++..+...=+.+..+..|-.=.=.++.++.+.+++..- +++.++..++++
T Consensus 131 ~~~~~~~~~~~~~l~~~~i~l~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (327)
T PF01594_consen 131 SSLSSFISSIFSFLFNFFIFLIFLFFFLLDGEKLRRFLIRLLPPRNRERFEEILRKID 188 (327)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 344444444444443333333333333333333444444433322 344444433333
No 11
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=58.65 E-value=1.2e+02 Score=27.73 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCce--------eecHHHHHHHHHHHHHHHHHHHHHHchhhcccchHH
Q 026435 86 FLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPEL--------EVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRL 157 (238)
Q Consensus 86 liSvv~~i~l~~l~~lFl~~~~~~~~~r~~~~~p~~--------~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~ 157 (238)
+.+++.-++++...+..+|..+.++++..+++.+.. .+..+.+.+....+...+|.-....-..-.--|...
T Consensus 83 l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~t 162 (304)
T COG0053 83 LASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLT 162 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHH
Confidence 445555555555555567777777776443333311 234444555555555555544333222222237778
Q ss_pred HHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhh-HHHhhchhHHH
Q 026435 158 FFQVVAYLWLLSAIG-SYFSFFTLAYIGTLLSITVP-ALYSRFEARVD 203 (238)
Q Consensus 158 ~lkv~~~L~~ls~vG-~~~s~~tLl~ig~v~~FTvP-~lYe~yq~~ID 203 (238)
++-+++++. ..+.| .|++...-+.+++..+.+.- .++|.....+|
T Consensus 163 s~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d 209 (304)
T COG0053 163 SLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMD 209 (304)
T ss_pred HHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 887777777 77778 55666555555555555433 34444555555
No 12
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=55.93 E-value=93 Score=24.01 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=13.5
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHH
Q 026435 123 VSEEMVNNAAASFRVKINYLLLMA 146 (238)
Q Consensus 123 isee~v~~~a~~v~~~iN~~l~~l 146 (238)
||++..+++.. .+|..+...
T Consensus 30 is~~ef~~iI~----~IN~~l~~a 49 (118)
T PF10256_consen 30 ISPEEFEEIIN----TINQILKEA 49 (118)
T ss_pred CCHHHHHHHHH----HHHHHHHHH
Confidence 88888875554 567766554
No 13
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=55.70 E-value=24 Score=25.81 Aligned_cols=37 Identities=27% Similarity=0.516 Sum_probs=30.9
Q ss_pred HHHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHH
Q 026435 144 LMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTL 180 (238)
Q Consensus 144 ~~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tL 180 (238)
+..+..|+-+++....-++++|+.+..+|-++|...+
T Consensus 37 hiihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vMl 73 (81)
T KOG3488|consen 37 HIIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVML 73 (81)
T ss_pred HHHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4456778889999999999999999999998776543
No 14
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=50.26 E-value=5.8 Score=32.13 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=12.4
Q ss_pred cccceeecccccchhHHHHHHHH
Q 026435 52 RTADVLLWKRRRVSFGVIVVATV 74 (238)
Q Consensus 52 ~vaDlLlWrd~~~S~~vf~~~t~ 74 (238)
...+++.|+|++.|..++.+..+
T Consensus 99 ~~~~l~~~~~~~~~l~~~~~l~~ 121 (169)
T PF02453_consen 99 WLRRLVFGEDPKKSLKVFVVLYI 121 (169)
T ss_dssp HHHCCCHCT-TTGGG--------
T ss_pred HHHHHHcCccHHHHHHHHHHHHH
Confidence 56799999999999887655444
No 15
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.64 E-value=1.6e+02 Score=30.43 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchhHHHHHH
Q 026435 127 MVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYC 206 (238)
Q Consensus 127 ~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~yq~~ID~~v 206 (238)
+...+.+.+...+|.++...-..+-+ ++.++ ..|| .+-.+.++.+-..+.++++|-+|.+++-+..
T Consensus 254 D~~~vs~svs~nls~~lR~~~~~~g~---------~~~M~----~~S~-~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~ 319 (716)
T KOG0058|consen 254 DTQIVSNSVSQNLSDGLRNLVQGFGG---------LGFMF----SLSW-RLTLVTLIVVPIVALVAKIYGKYLRKLSKQT 319 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHh----hhhH-HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777666443322222 22222 2334 4445566666777888899999999888887
Q ss_pred HHHHHHHHH
Q 026435 207 GMIHKSISQ 215 (238)
Q Consensus 207 ~~~~~~~~~ 215 (238)
+.+.++.++
T Consensus 320 Q~a~A~a~~ 328 (716)
T KOG0058|consen 320 QDALARANQ 328 (716)
T ss_pred HHHHHHHHH
Confidence 777777666
No 16
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=45.71 E-value=28 Score=37.69 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeecHHHHHHHHHHHHHHHHHHHH
Q 026435 65 SFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLL 144 (238)
Q Consensus 65 S~~vf~~~t~~~~L~~~~~~sliSvv~~i~l~~l~~lFl~~~~~~~~~r~~~~~p~~~isee~v~~~a~~v~~~iN~~l~ 144 (238)
++++|++..+.| +| +|.-+++.+-+ ++.+...++|+.-...+.|+-...-.-+.+|+..++-.+ =.+++|.+|+
T Consensus 158 ~~i~l~~~v~Sw-if---g~~~fs~~slf-fii~~~~~vY~~~~~rv~rnird~v~~~~~~ek~~nd~E-SveWLNtfL~ 231 (1227)
T COG5038 158 VAIVLIGSVASW-IF---GYLGFSFASLF-FIILVTMYVYRTCIKRVRRNIRDLVQQELSEEKLENDYE-SVEWLNTFLQ 231 (1227)
T ss_pred hhHHHHHHHHHH-HH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-HHHHHHHHHH
Confidence 466677777776 55 34434433322 333455668876665555542211111344555544442 3457777776
Q ss_pred HHchh
Q 026435 145 MAHDI 149 (238)
Q Consensus 145 ~lr~l 149 (238)
++=-|
T Consensus 232 KfW~i 236 (1227)
T COG5038 232 KFWPI 236 (1227)
T ss_pred hheec
Confidence 65444
No 17
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=43.55 E-value=2.4e+02 Score=25.08 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=23.3
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026435 196 SRFEARVDRYCGMIHKSISQHYKVVDENVIS 226 (238)
Q Consensus 196 e~yq~~ID~~v~~~~~~~~~~y~~~~~kv~~ 226 (238)
.++|++||+++..++++.-++...+-.|.++
T Consensus 94 s~~E~eid~~l~~~k~~~~~~a~~~~~r~l~ 124 (225)
T KOG1726|consen 94 SKHEEEIDRMLVEAKERVYDAAVSILKRALN 124 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999988887766665555444
No 18
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=40.44 E-value=1.8e+02 Score=22.75 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=27.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHH
Q 026435 152 GKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALY 195 (238)
Q Consensus 152 g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lY 195 (238)
+|..+.|+..+. ++|.+|-..|++|+-..++|-+|+--
T Consensus 5 tERVKlfFEwFL------F~~AIFiAItIlYILLalL~EvPkYI 42 (117)
T PF07234_consen 5 TERVKLFFEWFL------FFGAIFIAITILYILLALLFEVPKYI 42 (117)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 445555554332 35677777899999999999999743
No 19
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=39.62 E-value=2.8e+02 Score=28.30 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=39.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026435 170 AIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRT 231 (238)
Q Consensus 170 ~vG~~~s~~tLl~ig~v~~FTvP~lYe~yq~~ID~~v~~~~~~~~~~y~~~~~kv~~kip~~ 231 (238)
.-|+|.+...++.++++..|.+=..+.-||+..-.+++....++++ .-+..+...|-+
T Consensus 30 ~~~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~ls~~~~~----~~~~al~nmPiG 87 (655)
T COG3887 30 SFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYLSYQAEK----SLEEALTNMPIG 87 (655)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCce
Confidence 4566666666666666666666666666776666677777777776 445567778865
No 20
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=38.29 E-value=1.1e+02 Score=22.36 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=17.0
Q ss_pred HHHHHHHhhhHHHhhchhHHHHHHHHHHHHHHH
Q 026435 183 IGTLLSITVPALYSRFEARVDRYCGMIHKSISQ 215 (238)
Q Consensus 183 ig~v~~FTvP~lYe~yq~~ID~~v~~~~~~~~~ 215 (238)
+......++-.+.|+|.+.+-+..+....+++.
T Consensus 36 ~~~~i~~~~E~l~e~Y~~~~w~~F~~Lhnkinp 68 (72)
T PF13198_consen 36 FVWIIGKIIEPLFELYKDWFWNPFNALHNKINP 68 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhccccc
Confidence 334444556666666665555555444444443
No 21
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=35.53 E-value=5.1e+02 Score=26.80 Aligned_cols=29 Identities=3% Similarity=-0.062 Sum_probs=23.0
Q ss_pred HHHHHHHHchhhcccchHHHHHHHHHHHH
Q 026435 139 INYLLLMAHDITVGKDFRLFFQVVAYLWL 167 (238)
Q Consensus 139 iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ 167 (238)
+.....+++.+..|||+..++-++++.+.
T Consensus 499 l~~i~~~~~~l~~We~P~kt~~Fl~~~~~ 527 (683)
T PF04842_consen 499 LIEIAKWLQKLASWEEPLKTLVFLALFLY 527 (683)
T ss_pred HHHHHHHHHHHhhccCcchhHHHHHHHHH
Confidence 45567899999999999999987764443
No 22
>PRK09579 multidrug efflux protein; Reviewed
Probab=33.24 E-value=6.4e+02 Score=27.07 Aligned_cols=41 Identities=7% Similarity=0.122 Sum_probs=19.6
Q ss_pred HHHHHhhhHHHhhchh------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026435 185 TLLSITVPALYSRFEA------RVDRYCGMIHKSISQHYKVVDENVI 225 (238)
Q Consensus 185 ~v~~FTvP~lYe~yq~------~ID~~v~~~~~~~~~~y~~~~~kv~ 225 (238)
++..+.+|.+|...-. ...+..+...+.+++.|+++-.+++
T Consensus 475 l~al~l~P~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Y~~~l~~~l 521 (1017)
T PRK09579 475 IVALTLSPMMCALLLRHEENPSGLAHRLDRLFERLKQRYQRALHGTL 521 (1017)
T ss_pred HHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667888754311 1111112222345666766555544
No 23
>PHA02677 hypothetical protein; Provisional
Probab=30.02 E-value=1.2e+02 Score=23.89 Aligned_cols=33 Identities=15% Similarity=0.498 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhHHHhhchhHHHHHHHHH
Q 026435 177 FFTLAYIGTLLSITVPALYSRFEARVDRYCGMI 209 (238)
Q Consensus 177 ~~tLl~ig~v~~FTvP~lYe~yq~~ID~~v~~~ 209 (238)
|+-|+|+..+.=..+|.+.||-+.|=|++..-.
T Consensus 5 FLilCYFILIFNIiVP~I~EKlR~E~~Af~ky~ 37 (108)
T PHA02677 5 FLIICYFVLIFNILVPGIFEKLRQEHAAFDRLA 37 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999998887654
No 24
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=29.82 E-value=3.6e+02 Score=26.24 Aligned_cols=68 Identities=22% Similarity=0.409 Sum_probs=40.9
Q ss_pred ccCCCcccccccccCCccccCCCccCCCCCCccc----cccCCCc-ccce---eecccccchhHHHHHHHHHHHHHH
Q 026435 12 DRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVH----QFMGGGR-TADV---LLWKRRRVSFGVIVVATVAWLIFE 80 (238)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~----~~lggg~-vaDl---LlWrd~~~S~~vf~~~t~~~~L~~ 80 (238)
++-||.++++.+..-+.+.+.+..|.-+|+ ..| --.++.. +-|+ ..||--..|-..+...+++|.-+.
T Consensus 6 ~~~~~~~~~t~~~~~~d~~e~~~~r~~~r~-e~~~~~~~~~~ne~~vdDit~dffykphTiTlL~i~~~~l~y~a~~ 81 (466)
T KOG2735|consen 6 RRAGDPAPTTEVPAGSDSVEPNGARKLRRD-ELHEKMHFRMINERVVDDITTDFFYKPHTITLLLILICFLIYKAFT 81 (466)
T ss_pred hccCCCCCCCcCCCCCcccCCCCccchhhh-hhhhhhccCccceeeeccchhhheecCceehHHHHHHHHHHHHHHh
Confidence 456888888877776666555555554444 443 2222333 3333 468877788777777777766553
No 25
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=28.11 E-value=7.5e+02 Score=26.30 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=41.9
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhc----hh----HHHHHHHHHHHHHHHHHHH
Q 026435 148 DITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRF----EA----RVDRYCGMIHKSISQHYKV 219 (238)
Q Consensus 148 ~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~y----q~----~ID~~v~~~~~~~~~~y~~ 219 (238)
=++.......+++-+....+++.+.|+ ++..+.+|.++... +. ...+..++....+++.|.+
T Consensus 449 l~f~~G~~g~~~~~l~~~v~~al~~Sl----------lval~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~ 518 (1021)
T PF00873_consen 449 LLFMPGIAGQFFRPLALTVIIALIASL----------LVALTLVPALAALFLKPKKKSSKKRFFSKFDRFFDRLQRGYRR 518 (1021)
T ss_dssp GGGSBHHHHHHHHHHHHHHHHHHHHHH----------HHHHTTHHHHHHHCS----TT-CCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHH----------HHHHHhhhhhhhhhhccccccccccccccccccccccccchhh
Confidence 344555666677777777777777777 67777888777542 11 1234455666667777777
Q ss_pred HHHHHH
Q 026435 220 VDENVI 225 (238)
Q Consensus 220 ~~~kv~ 225 (238)
+-.+++
T Consensus 519 lL~~~L 524 (1021)
T PF00873_consen 519 LLRWAL 524 (1021)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 655544
No 26
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=27.77 E-value=1.6e+02 Score=29.57 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=50.1
Q ss_pred CCCccccccCCCcccceee----------cccccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 026435 40 RHGTVHQFMGGGRTADVLL----------WKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAA 109 (238)
Q Consensus 40 r~~~v~~~lggg~vaDlLl----------Wrd~~~S~~vf~~~t~~~~L~~~~~~sliSvv~~i~l~~l~~lFl~~~~~~ 109 (238)
||.+.+-++|+=.+.+... |+--...++.+++.+++-+-+.+..-+++-.+.+...+++...+++-+..+
T Consensus 486 rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p~i~lva~~m~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~g~~ 565 (579)
T KOG1889|consen 486 RQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAPIIFLVALSMFIISLLFSTPNLLYRLFWFAIMVVSIAVILINGDQ 565 (579)
T ss_pred ccchHHHhcCCcccccccccCCCcccccCceeehhhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhheechHH
Confidence 7778888888766766664 554444433333333321111123456666677777777777777777788
Q ss_pred HhccCCCCCCc
Q 026435 110 FRNKQLESLPE 120 (238)
Q Consensus 110 ~~~r~~~~~p~ 120 (238)
++|||-...|.
T Consensus 566 fvnwPrl~~p~ 576 (579)
T KOG1889|consen 566 FVNWPRLVLPQ 576 (579)
T ss_pred hcCCccccCcc
Confidence 99998777664
No 27
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=27.61 E-value=1.1e+02 Score=23.00 Aligned_cols=47 Identities=23% Similarity=0.212 Sum_probs=25.2
Q ss_pred eeecccccchhHHHHHHHHH-HHHHHhcCCchhHHHH---HHHHHHHHHHH
Q 026435 56 VLLWKRRRVSFGVIVVATVA-WLIFERSGLPFLSVCS---DVLLLLIVLMF 102 (238)
Q Consensus 56 lLlWrd~~~S~~vf~~~t~~-~~L~~~~~~sliSvv~---~i~l~~l~~lF 102 (238)
++.+||+-.++..+...... =.++.+.+..++.++- |.+.+..+.+|
T Consensus 22 vv~~kn~v~svl~l~~~~~~~a~l~~lL~a~fvA~~qi~VYaGai~vLflF 72 (88)
T PRK06433 22 VVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQVLVYVGAVLILITF 72 (88)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46788988887665332221 1244456777665544 44444433344
No 28
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=26.97 E-value=1.5e+02 Score=20.33 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHhhc
Q 026435 172 GSYFSFFTLAYIGTLLSITVPALYSRF 198 (238)
Q Consensus 172 G~~~s~~tLl~ig~v~~FTvP~lYe~y 198 (238)
-++-+++||+..-|++++.+-.+=+..
T Consensus 19 vtyaDlmTLLl~fFVlL~s~s~~d~~k 45 (58)
T PF13677_consen 19 VTYADLMTLLLAFFVLLFSMSSVDKEK 45 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 345588899999999988876654443
No 29
>PRK11677 hypothetical protein; Provisional
Probab=24.89 E-value=3.2e+02 Score=22.24 Aligned_cols=8 Identities=0% Similarity=0.094 Sum_probs=3.4
Q ss_pred chhHHHHH
Q 026435 198 FEARVDRY 205 (238)
Q Consensus 198 yq~~ID~~ 205 (238)
||.++..+
T Consensus 48 YkqeV~~H 55 (134)
T PRK11677 48 YRQELVSH 55 (134)
T ss_pred HHHHHHHH
Confidence 44444433
No 30
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.62 E-value=3.4e+02 Score=21.75 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=10.0
Q ss_pred ccceeecccccch
Q 026435 53 TADVLLWKRRRVS 65 (238)
Q Consensus 53 vaDlLlWrd~~~S 65 (238)
+-|+++|-+...+
T Consensus 41 llDViyW~rQVi~ 53 (129)
T KOG3415|consen 41 LLDVIYWIRQVIG 53 (129)
T ss_pred HHHHHHHHHHHHH
Confidence 5799999876554
No 31
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=23.08 E-value=2.5e+02 Score=28.72 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=31.3
Q ss_pred eecHHHH----HHHHHHHHHHHHHHHHHHchhhcccchHHHHHHHHHHHHHH
Q 026435 122 EVSEEMV----NNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLS 169 (238)
Q Consensus 122 ~isee~v----~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ls 169 (238)
+.|.+.. +++--.|..-+-.+...+.+|=+|++...+..++++.++..
T Consensus 87 ~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW 138 (642)
T PF11696_consen 87 EFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAW 138 (642)
T ss_pred cCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Confidence 4454444 44444455556667788889999999999886666444443
No 32
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=22.71 E-value=3e+02 Score=19.74 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=21.1
Q ss_pred cccchHHHHHHHH-HHHHHHHHhhhhHHHHHH
Q 026435 151 VGKDFRLFFQVVA-YLWLLSAIGSYFSFFTLA 181 (238)
Q Consensus 151 ~g~d~~~~lkv~~-~L~~ls~vG~~~s~~tLl 181 (238)
.+|++...+|+.+ +..++..+|-.+......
T Consensus 29 ~~eEy~~~aKi~~~Gi~liG~IGfiI~li~~~ 60 (65)
T COG2443 29 DWEEYSKIAKITGLGILLIGIIGFIIYLIMIP 60 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777655 888888888776554433
No 33
>PRK04897 heat shock protein HtpX; Provisional
Probab=22.29 E-value=2.5e+02 Score=25.45 Aligned_cols=22 Identities=14% Similarity=0.156 Sum_probs=16.5
Q ss_pred ecccccchhHHHHHHHHHHHHH
Q 026435 58 LWKRRRVSFGVIVVATVAWLIF 79 (238)
Q Consensus 58 lWrd~~~S~~vf~~~t~~~~L~ 79 (238)
.|||..+|..++++.++++.++
T Consensus 6 ~~~n~~~t~~ll~~~~~~~~~~ 27 (298)
T PRK04897 6 IASNKRKTVFLLVVFFLLLALV 27 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999988888887765444
No 34
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=21.89 E-value=3.8e+02 Score=20.65 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=33.5
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 026435 122 EVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYI 183 (238)
Q Consensus 122 ~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~i 183 (238)
..+..+.+++.+++..++++.++...| .+-| +-++|.+.+.+|.++|.|.
T Consensus 41 ~~~~~a~~kv~~W~~~k~k~~~~FV~R---Nk~W---------~T~~S~~tS~isIL~LV~~ 90 (100)
T PF06363_consen 41 TKIKTACDKVKSWVKNKMKSMLSFVER---NKAW---------FTVVSAVTSFISILLLVTK 90 (100)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH---cchH---------hhHHHHHHHHHHHHHHHHH
Confidence 345677788888888888777765433 1222 2356788888888888764
No 35
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=21.81 E-value=3e+02 Score=19.42 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=31.1
Q ss_pred HHHHHhhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026435 185 TLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENV 224 (238)
Q Consensus 185 ~v~~FTvP~lYe~yq~~ID~~v~~~~~~~~~~y~~~~~kv 224 (238)
.++++..|.==++-++.|-...+.+++++++.++...+++
T Consensus 14 ~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~ 53 (74)
T PF12732_consen 14 AAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKV 53 (74)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888877755543
No 36
>TIGR02831 spo_II_M stage II sporulation protein M. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This predicted integral membrane protein is designated stage II sporulation protein M.
Probab=21.34 E-value=5.2e+02 Score=22.02 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHhhhHHHhhch
Q 026435 156 RLFFQVVAYLWLLSA--IGSYFSFFTLAYIGTLLSITVPALYSRFE 199 (238)
Q Consensus 156 ~~~lkv~~~L~~ls~--vG~~~s~~tLl~ig~v~~FTvP~lYe~yq 199 (238)
..-++.+..+|++.. +|--.-+..++.=|++..||+-.+..+++
T Consensus 71 ~nn~~~~~li~~lGl~~~Gip~i~~~l~~nGf~~Gf~v~~~v~~~g 116 (200)
T TIGR02831 71 FNNIKYVGLMWILGLSIIGLPIILILDFLKGFVVGFTVGFLVNQLG 116 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666677776554 67776667789999999999999988875
No 37
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=21.27 E-value=1.5e+02 Score=22.66 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=28.6
Q ss_pred hhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 026435 190 TVPALYSRFEARVDRYCGMIHKSISQHYKVVDE 222 (238)
Q Consensus 190 TvP~lYe~yq~~ID~~v~~~~~~~~~~y~~~~~ 222 (238)
+.=.+|.+|+++.|+....+.+++.+.|+..+.
T Consensus 64 ~Wr~~Y~~~~~e~e~~~~~~~~~L~~~~~~~~~ 96 (109)
T PF06881_consen 64 SWRELYEKLKKEREEKLKEATERLRKKIKKLQQ 96 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556789999999999999999999998888764
No 38
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=20.91 E-value=9.4e+02 Score=24.88 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=40.6
Q ss_pred HHHHchhhcccchH------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchhHHHHHHHHHHHHH
Q 026435 143 LLMAHDITVGKDFR------LFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSI 213 (238)
Q Consensus 143 l~~lr~l~~g~d~~------~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~yq~~ID~~v~~~~~~~ 213 (238)
++..|+.+++.=+. .++-.++++|..++-=.|+.+..+.....+....-|.+-+++++.+....+.-..-+
T Consensus 260 l~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lv 336 (709)
T COG2274 260 LEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLV 336 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44455555554333 333334444444444445555555666666667778888888888887755443333
Done!