Query 026435
Match_columns 238
No_of_seqs 121 out of 433
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:31:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.3 8E-08 2.7E-12 70.2 -0.1 60 101-160 12-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 97.7 8.6E-07 2.9E-11 61.6 -4.3 50 105-154 4-60 (60)
3 2knc_A Integrin alpha-IIB; tra 52.4 40 0.0014 22.3 5.6 29 87-117 17-45 (54)
4 2l8s_A Integrin alpha-1; trans 47.2 36 0.0012 22.5 4.7 29 87-117 14-42 (54)
5 2k1a_A Integrin alpha-IIB; sin 29.0 59 0.002 20.3 3.3 27 87-115 15-41 (42)
6 3vou_A ION transport 2 domain 25.4 2.2E+02 0.0075 21.5 7.1 40 189-231 105-144 (148)
7 1w53_A Phosphoserine phosphata 20.9 1E+02 0.0035 22.1 3.7 38 190-227 3-40 (84)
8 1oef_A Apolipoprotein E; glyco 20.2 75 0.0026 17.4 2.3 21 202-222 3-23 (26)
9 3ci9_A Heat shock factor-bindi 14.6 2.5E+02 0.0087 17.8 4.3 30 199-228 4-33 (48)
10 1rh5_B Preprotein translocase 13.7 2E+02 0.007 19.9 3.8 38 154-191 33-71 (74)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.30 E-value=8e-08 Score=70.23 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=55.5
Q ss_pred HH-HHHHHHHHhccCCCCCC-------ceeecHHHHHHHHHHHHHHHHHHHHHHchhhcccchHHHHH
Q 026435 101 MF-FRANFAAFRNKQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQ 160 (238)
Q Consensus 101 lF-l~~~~~~~~~r~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lk 160 (238)
.| +|..+.+.++|+...+| |+.+|+|++++.++.+...+|.++.++|++|++||+.+|+|
T Consensus 12 sfRiYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 12 GMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp -CTHHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 44 88999999999998899 88999999999999999999999999999999999998875
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=97.66 E-value=8.6e-07 Score=61.58 Aligned_cols=50 Identities=22% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHHHHHhccCCCCCC-------ceeecHHHHHHHHHHHHHHHHHHHHHHchhhcccc
Q 026435 105 ANFAAFRNKQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKD 154 (238)
Q Consensus 105 ~~~~~~~~r~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d 154 (238)
..+.+.++++...+| |+.+|+|.+++.++.+..++|.++..+|++|++||
T Consensus 4 k~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 4 KGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp CTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 334455667666777 88999999999999999999999999999999987
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=52.42 E-value=40 Score=22.28 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026435 87 LSVCSDVLLLLIVLMFFRANFAAFRNKQLES 117 (238)
Q Consensus 87 iSvv~~i~l~~l~~lFl~~~~~~~~~r~~~~ 117 (238)
+++++-++++.+++..+|. .+|++|..++
T Consensus 17 ~svl~GLllL~li~~~LwK--~GFFkR~~~~ 45 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK--VGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCCC
Confidence 5667777777777777885 5888886654
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=47.20 E-value=36 Score=22.53 Aligned_cols=29 Identities=24% Similarity=0.498 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026435 87 LSVCSDVLLLLIVLMFFRANFAAFRNKQLES 117 (238)
Q Consensus 87 iSvv~~i~l~~l~~lFl~~~~~~~~~r~~~~ 117 (238)
+|+++-++++++++..+|+ .+|++|..++
T Consensus 14 ~svl~GLLLL~Lii~~LwK--~GFFKR~~~~ 42 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK--IGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCcc
Confidence 5667777777777777885 5888886553
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=28.97 E-value=59 Score=20.31 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 026435 87 LSVCSDVLLLLIVLMFFRANFAAFRNKQL 115 (238)
Q Consensus 87 iSvv~~i~l~~l~~lFl~~~~~~~~~r~~ 115 (238)
+++++-++++.+++..+|+ .+|++|..
T Consensus 15 ~s~l~GLllL~li~~~LwK--~GFFkR~~ 41 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWK--VGFFKRNR 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCC
Confidence 5666666666666666775 56777653
No 6
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=25.43 E-value=2.2e+02 Score=21.50 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=27.4
Q ss_pred HhhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026435 189 ITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRT 231 (238)
Q Consensus 189 FTvP~lYe~yq~~ID~~v~~~~~~~~~~y~~~~~kv~~kip~~ 231 (238)
+....+.++.+++.|..-....++.++..+.+++ .+.|+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~---~~~~~~ 144 (148)
T 3vou_A 105 VQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAE---HSRQGS 144 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCcC
Confidence 4556778888888888888888888776666554 355553
No 7
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=20.93 E-value=1e+02 Score=22.08 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=29.6
Q ss_pred hhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026435 190 TVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 227 (238)
Q Consensus 190 TvP~lYe~yq~~ID~~v~~~~~~~~~~y~~~~~kv~~k 227 (238)
+.+.+.++|++.++.++..-.++.-.+-++|...++.|
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E~~Ly~~q~fs~~~iek 40 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIEH 40 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhHHHHHc
Confidence 45678899999999999887777777777777666544
No 8
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=20.23 E-value=75 Score=17.38 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026435 202 VDRYCGMIHKSISQHYKVVDE 222 (238)
Q Consensus 202 ID~~v~~~~~~~~~~y~~~~~ 222 (238)
+..+++.++.++.+.|+++.+
T Consensus 3 ~~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHh
Confidence 466788888888888777654
No 9
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=14.59 E-value=2.5e+02 Score=17.84 Aligned_cols=30 Identities=10% Similarity=0.369 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026435 199 EARVDRYCGMIHKSISQHYKVVDENVISRI 228 (238)
Q Consensus 199 q~~ID~~v~~~~~~~~~~y~~~~~kv~~ki 228 (238)
..++-.+++....++++.++...+.+++||
T Consensus 4 ~~dLt~~vq~LL~qmq~kFq~mS~~I~~ri 33 (48)
T 3ci9_A 4 VQDLTSVVQTLLQQMQDKFQTISDQIIGRI 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666677766666766666665
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=13.71 E-value=2e+02 Score=19.94 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=19.4
Q ss_pred chHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 026435 154 DFRLFFQVV-AYLWLLSAIGSYFSFFTLAYIGTLLSITV 191 (238)
Q Consensus 154 d~~~~lkv~-~~L~~ls~vG~~~s~~tLl~ig~v~~FTv 191 (238)
++....+++ ++..++..+|-.+.+.....-+.+-.=|.
T Consensus 33 EF~~iak~~~iG~~imG~IGfiIkli~ipIn~ii~~~~~ 71 (74)
T 1rh5_B 33 EYLAVAKVTALGISLLGIIGYIIHVPATYIKGILKPPTT 71 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 333444433 36667777887766655555554443333
Done!