Query 026435
Match_columns 238
No_of_seqs 121 out of 433
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 13:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026435.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026435hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2vc1 a.118.1.14 (C:29-290) 41.3 49 0.0036 26.0 8.2 32 183-214 141-176 (262)
2 d1i5za1 a.4.5.4 (A:138-206) Ca 29.0 25 0.0018 21.8 3.5 31 120-150 27-57 (69)
3 d1cjba_ c.61.1.1 (A:) Hypoxant 21.0 17 0.0012 28.6 1.5 31 188-218 28-65 (228)
4 d2q09a1 b.92.1.10 (A:4-65,A:36 17.7 24 0.0018 24.5 1.6 50 10-63 29-78 (103)
5 d2je6a2 d.101.1.1 (A:192-275) 15.1 97 0.0071 19.4 4.3 25 199-223 57-81 (84)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 15.1 61 0.0044 18.1 2.6 20 179-198 15-34 (37)
7 d2gaua1 a.4.5.4 (A:152-232) Tr 13.7 97 0.007 19.1 3.9 31 120-150 27-57 (81)
8 d2nn6e2 d.101.1.1 (E:192-285) 13.5 1.5E+02 0.011 19.0 5.0 26 199-224 58-83 (94)
9 d1nvpb_ a.32.1.1 (B:) Large ch 13.3 91 0.0067 18.1 3.2 32 190-226 1-32 (43)
10 d1z7ga1 c.61.1.1 (A:4-217) Hyp 12.6 41 0.003 25.8 1.9 30 188-217 17-53 (214)
No 1
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.34 E-value=49 Score=26.04 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=20.7
Q ss_pred HHHHHHHhhhH----HHhhchhHHHHHHHHHHHHHH
Q 026435 183 IGTLLSITVPA----LYSRFEARVDRYCGMIHKSIS 214 (238)
Q Consensus 183 ig~v~~FTvP~----lYe~yq~~ID~~v~~~~~~~~ 214 (238)
+..+.+.|+|- +|++++++.++.++.+...++
T Consensus 141 ~~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~~ 176 (262)
T d1h2vc1 141 YVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLK 176 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34456667665 467777777777776665543
No 2
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.97 E-value=25 Score=21.77 Aligned_cols=31 Identities=13% Similarity=0.300 Sum_probs=27.9
Q ss_pred ceeecHHHHHHHHHHHHHHHHHHHHHHchhh
Q 026435 120 ELEVSEEMVNNAAASFRVKINYLLLMAHDIT 150 (238)
Q Consensus 120 ~~~isee~v~~~a~~v~~~iN~~l~~lr~l~ 150 (238)
.+.++++.+-+++..-++.+|+.+..+++--
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~g 57 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQN 57 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 6789999999999999999999999988743
No 3
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]}
Probab=21.03 E-value=17 Score=28.57 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=25.0
Q ss_pred HHhhhHHHhhc-------hhHHHHHHHHHHHHHHHHHH
Q 026435 188 SITVPALYSRF-------EARVDRYCGMIHKSISQHYK 218 (238)
Q Consensus 188 ~FTvP~lYe~y-------q~~ID~~v~~~~~~~~~~y~ 218 (238)
+|++|..|++| +++|.+.++....++.+.|+
T Consensus 28 ~f~~p~~y~~~~~~Vli~~~~I~~rI~rLA~eI~~~y~ 65 (228)
T d1cjba_ 28 SFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYN 65 (228)
T ss_dssp GSCCCTTTGGGEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCccchhccccEEecCHHHHHHHHHHHHHHHHHHcC
Confidence 68999999988 56788888888888877663
No 4
>d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}
Probab=17.66 E-value=24 Score=24.53 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=30.4
Q ss_pred ccccCCCcccccccccCCccccCCCccCCCCCCccccccCCCcccceeeccccc
Q 026435 10 IVDRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRR 63 (238)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~lggg~vaDlLlWrd~~ 63 (238)
++=+||...+....+--|+..++....+-||=-+ +--|+.||+++|.=+.
T Consensus 29 i~v~~g~I~~vgp~~~lpa~~~~~~~d~~gr~~t----levGk~ADlviwd~~~ 78 (103)
T d2q09a1 29 LGVHEGRIHALVPMQDLKGPYPAHWQDMKGKLVT----LRVGMLADFLVWNCGH 78 (103)
T ss_dssp EEEETTEEEEEEEGGGCC--CCTTSEECTTCEEE----CCTTSBCCEEEESSSC
T ss_pred EEEeCCeEEEEEehhhCCccccchhhhcccceEE----ecCCCccCEEEEcCCC
Confidence 3446777777777777666655554444444322 2348999999997443
No 5
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=15.13 E-value=97 Score=19.40 Aligned_cols=25 Identities=4% Similarity=0.053 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 026435 199 EARVDRYCGMIHKSISQHYKVVDEN 223 (238)
Q Consensus 199 q~~ID~~v~~~~~~~~~~y~~~~~k 223 (238)
+++|.+.++.+.+..++.++.+++.
T Consensus 57 ~~~i~~~i~~A~~~~~~l~~~l~~~ 81 (84)
T d2je6a2 57 LQDIDQAENTARSTAVKLLEELKKH 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999988887653
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.10 E-value=61 Score=18.09 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhHHHhhc
Q 026435 179 TLAYIGTLLSITVPALYSRF 198 (238)
Q Consensus 179 tLl~ig~v~~FTvP~lYe~y 198 (238)
|-+|.|.++.|.+-.++..|
T Consensus 15 tsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 55666777777666666554
No 7
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=13.67 E-value=97 Score=19.12 Aligned_cols=31 Identities=10% Similarity=-0.105 Sum_probs=27.0
Q ss_pred ceeecHHHHHHHHHHHHHHHHHHHHHHchhh
Q 026435 120 ELEVSEEMVNNAAASFRVKINYLLLMAHDIT 150 (238)
Q Consensus 120 ~~~isee~v~~~a~~v~~~iN~~l~~lr~l~ 150 (238)
.+.++++.+-+++..=++.+|+.+..+++--
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~g 57 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSER 57 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5678999999999999999999999888753
No 8
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.52 E-value=1.5e+02 Score=18.99 Aligned_cols=26 Identities=4% Similarity=-0.173 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026435 199 EARVDRYCGMIHKSISQHYKVVDENV 224 (238)
Q Consensus 199 q~~ID~~v~~~~~~~~~~y~~~~~kv 224 (238)
.++|++.++.+....++.++.+++.+
T Consensus 58 ~~~i~~~i~~A~~~~~el~~~l~~~L 83 (94)
T d2nn6e2 58 PESIFEMMETGKRVGKVLHASLQSVV 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999888887654
No 9
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.32 E-value=91 Score=18.06 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=20.8
Q ss_pred hhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026435 190 TVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 226 (238)
Q Consensus 190 TvP~lYe~yq~~ID~~v~~~~~~~~~~y~~~~~kv~~ 226 (238)
|+|++| +..|+..++..+..+.+- -+|+.+++
T Consensus 1 tV~kvY---~~VIedVI~~vR~~F~~~--GvDe~vL~ 32 (43)
T d1nvpb_ 1 TVPKLY---RSVIEDVINDVRDIFLDD--GVDEQVLM 32 (43)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHH--TCCHHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHc--CCcHHHHH
Confidence 466665 578888888888877652 24444443
No 10
>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.59 E-value=41 Score=25.81 Aligned_cols=30 Identities=7% Similarity=0.158 Sum_probs=25.0
Q ss_pred HHhhhHHHhhc-------hhHHHHHHHHHHHHHHHHH
Q 026435 188 SITVPALYSRF-------EARVDRYCGMIHKSISQHY 217 (238)
Q Consensus 188 ~FTvP~lYe~y-------q~~ID~~v~~~~~~~~~~y 217 (238)
+|++|.-|+++ +++|.+.++..-.++.+.|
T Consensus 17 ~f~~p~~~~~~~~~ilis~~~I~~~I~rLA~qI~~~y 53 (214)
T d1z7ga1 17 LFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEM 53 (214)
T ss_dssp GSCCCGGGTTTEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhccccEEecCHHHHHHHHHHHHHHHHHHc
Confidence 57899999888 7788888888888887766
Done!