Query 026436
Match_columns 238
No_of_seqs 205 out of 1350
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.5 7.4E-14 1.6E-18 93.9 5.7 49 56-104 2-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.5 9.4E-14 2E-18 94.5 6.1 54 54-107 3-59 (60)
3 smart00353 HLH helix loop heli 99.4 5.1E-13 1.1E-17 88.8 6.2 49 60-108 1-52 (53)
4 KOG1318 Helix loop helix trans 99.3 1.8E-11 3.9E-16 111.8 8.8 61 51-111 229-293 (411)
5 KOG1319 bHLHZip transcription 99.1 2.2E-10 4.7E-15 93.6 5.4 65 53-117 60-131 (229)
6 cd04897 ACT_ACR_3 ACT domain-c 98.6 4E-07 8.6E-12 65.0 9.6 67 165-235 3-69 (75)
7 cd04895 ACT_ACR_1 ACT domain-c 98.6 6E-07 1.3E-11 63.6 9.6 67 165-235 3-69 (72)
8 cd04896 ACT_ACR-like_3 ACT dom 98.5 1.3E-06 2.9E-11 62.2 9.4 67 165-236 2-70 (75)
9 cd04900 ACT_UUR-like_1 ACT dom 98.5 3.8E-06 8.2E-11 59.3 10.6 70 165-238 3-73 (73)
10 KOG2588 Predicted DNA-binding 98.4 3.2E-07 7E-12 90.8 6.4 63 53-115 274-337 (953)
11 KOG2483 Upstream transcription 98.4 2.4E-06 5.1E-11 73.4 10.8 66 51-116 55-123 (232)
12 cd04927 ACT_ACR-like_2 Second 98.4 3.3E-06 7.1E-11 60.3 9.6 71 164-238 1-75 (76)
13 KOG3561 Aryl-hydrocarbon recep 98.4 3.5E-07 7.7E-12 90.2 5.2 51 56-106 21-75 (803)
14 KOG4304 Transcriptional repres 98.4 3.1E-07 6.8E-12 79.9 3.9 57 53-109 30-94 (250)
15 cd04925 ACT_ACR_2 ACT domain-c 98.2 1.7E-05 3.7E-10 56.2 10.0 68 165-236 2-70 (74)
16 cd04899 ACT_ACR-UUR-like_2 C-t 98.0 0.00013 2.8E-09 50.3 9.9 68 165-237 2-69 (70)
17 KOG0561 bHLH transcription fac 98.0 6.4E-06 1.4E-10 72.3 3.7 55 56-110 61-117 (373)
18 PLN03217 transcription factor 97.9 3.3E-05 7.2E-10 55.5 6.2 50 67-116 19-74 (93)
19 KOG3960 Myogenic helix-loop-he 97.9 3.5E-05 7.7E-10 66.1 7.4 61 53-113 116-178 (284)
20 cd04926 ACT_ACR_4 C-terminal 97.7 0.00051 1.1E-08 48.3 9.4 66 165-235 3-68 (72)
21 PRK05007 PII uridylyl-transfer 97.7 0.00028 6.1E-09 71.7 10.7 72 160-236 805-876 (884)
22 KOG4029 Transcription factor H 97.7 0.00015 3.3E-09 62.3 7.5 62 52-113 106-171 (228)
23 cd04928 ACT_TyrKc Uncharacteri 97.5 0.0021 4.5E-08 45.0 9.8 64 165-234 3-67 (68)
24 PRK01759 glnD PII uridylyl-tra 97.4 0.0011 2.3E-08 67.3 10.6 79 153-236 771-851 (854)
25 cd04873 ACT_UUR-ACR-like ACT d 97.4 0.0038 8.2E-08 42.5 10.1 68 165-237 2-69 (70)
26 PRK00275 glnD PII uridylyl-tra 97.4 0.0014 3E-08 66.9 10.9 78 153-234 802-885 (895)
27 PRK04374 PII uridylyl-transfer 97.3 0.0018 4E-08 65.7 11.5 79 153-236 784-864 (869)
28 PRK05092 PII uridylyl-transfer 97.2 0.0025 5.4E-08 65.3 11.2 80 153-236 831-912 (931)
29 PF13740 ACT_6: ACT domain; PD 97.1 0.014 3E-07 41.3 10.7 65 163-234 2-66 (76)
30 PRK03381 PII uridylyl-transfer 97.0 0.0062 1.3E-07 61.3 11.1 68 162-235 706-773 (774)
31 TIGR01693 UTase_glnD [Protein- 96.9 0.0072 1.6E-07 61.4 10.8 80 153-237 767-848 (850)
32 TIGR01693 UTase_glnD [Protein- 96.9 0.0066 1.4E-07 61.7 10.5 70 161-234 666-736 (850)
33 PRK03059 PII uridylyl-transfer 96.8 0.0087 1.9E-07 60.9 10.5 69 161-236 784-852 (856)
34 PF01842 ACT: ACT domain; Int 96.8 0.02 4.2E-07 38.4 9.1 37 165-204 2-38 (66)
35 PF13291 ACT_4: ACT domain; PD 96.7 0.028 6.1E-07 39.8 9.9 52 163-217 6-58 (80)
36 PRK05007 PII uridylyl-transfer 96.7 0.015 3.3E-07 59.3 11.3 78 153-234 689-772 (884)
37 PRK01759 glnD PII uridylyl-tra 96.7 0.015 3.4E-07 59.1 11.1 79 152-235 664-745 (854)
38 COG2844 GlnD UTP:GlnB (protein 96.7 0.0097 2.1E-07 59.2 9.1 78 153-235 779-858 (867)
39 PRK03381 PII uridylyl-transfer 96.6 0.021 4.5E-07 57.6 11.6 71 161-235 597-667 (774)
40 cd04893 ACT_GcvR_1 ACT domains 96.6 0.042 9E-07 39.0 9.9 63 164-233 2-64 (77)
41 cd04887 ACT_MalLac-Enz ACT_Mal 96.4 0.025 5.4E-07 39.2 7.9 61 166-231 2-62 (74)
42 PRK05092 PII uridylyl-transfer 96.3 0.043 9.4E-07 56.4 11.9 79 152-234 719-804 (931)
43 cd04872 ACT_1ZPV ACT domain pr 96.3 0.034 7.3E-07 40.3 8.0 67 164-235 2-68 (88)
44 cd04875 ACT_F4HF-DF N-terminal 96.3 0.055 1.2E-06 37.7 8.8 66 166-236 2-69 (74)
45 PRK03059 PII uridylyl-transfer 96.1 0.045 9.7E-07 55.8 10.8 70 160-234 675-749 (856)
46 PRK00194 hypothetical protein; 96.1 0.048 1E-06 39.5 8.2 67 163-234 3-69 (90)
47 cd04870 ACT_PSP_1 CT domains f 96.1 0.078 1.7E-06 37.2 8.9 65 166-236 2-66 (75)
48 cd04880 ACT_AAAH-PDT-like ACT 96.1 0.061 1.3E-06 37.6 8.2 62 168-232 4-66 (75)
49 cd04869 ACT_GcvR_2 ACT domains 96.0 0.11 2.4E-06 36.5 9.6 66 166-236 2-72 (81)
50 PRK04435 hypothetical protein; 95.8 0.078 1.7E-06 42.5 8.7 70 159-232 65-134 (147)
51 PRK00275 glnD PII uridylyl-tra 95.8 0.067 1.4E-06 54.8 10.2 69 162-234 703-777 (895)
52 KOG4447 Transcription factor T 95.8 0.0056 1.2E-07 49.0 2.0 53 55-107 78-132 (173)
53 KOG3910 Helix loop helix trans 95.7 0.02 4.3E-07 53.9 5.4 59 52-110 523-585 (632)
54 cd04894 ACT_ACR-like_1 ACT dom 95.6 0.091 2E-06 36.0 7.0 65 165-232 2-66 (69)
55 cd04888 ACT_PheB-BS C-terminal 95.6 0.068 1.5E-06 37.0 6.7 63 165-231 2-64 (76)
56 cd04931 ACT_PAH ACT domain of 95.5 0.13 2.8E-06 37.9 8.4 66 164-232 15-80 (90)
57 cd04905 ACT_CM-PDT C-terminal 95.3 0.22 4.7E-06 35.3 8.8 64 166-232 4-68 (80)
58 cd04886 ACT_ThrD-II-like C-ter 95.2 0.2 4.2E-06 33.7 8.0 61 167-232 2-66 (73)
59 PRK04374 PII uridylyl-transfer 94.9 0.17 3.7E-06 51.7 9.9 70 161-234 688-759 (869)
60 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.7 0.13 2.8E-06 35.2 6.1 63 164-231 1-64 (79)
61 cd04904 ACT_AAAH ACT domain of 94.7 0.19 4.1E-06 35.3 6.9 48 167-217 4-51 (74)
62 cd04884 ACT_CBS C-terminal ACT 94.6 0.26 5.7E-06 34.0 7.3 63 166-233 2-66 (72)
63 PRK08577 hypothetical protein; 94.3 0.61 1.3E-05 36.7 9.8 66 162-231 55-121 (136)
64 cd04877 ACT_TyrR N-terminal AC 94.0 0.22 4.7E-06 34.7 6.1 35 165-202 2-36 (74)
65 cd04929 ACT_TPH ACT domain of 94.0 0.36 7.9E-06 34.1 7.2 49 168-219 5-53 (74)
66 cd04878 ACT_AHAS N-terminal AC 93.8 0.46 1E-05 31.7 7.3 61 165-231 2-63 (72)
67 cd02116 ACT ACT domains are co 93.6 0.56 1.2E-05 28.6 7.0 34 166-202 1-34 (60)
68 KOG3898 Transcription factor N 93.6 0.16 3.4E-06 44.6 5.6 53 53-105 70-125 (254)
69 cd04876 ACT_RelA-SpoT ACT dom 93.5 0.78 1.7E-05 29.6 7.8 48 166-216 1-48 (71)
70 cd04874 ACT_Af1403 N-terminal 93.4 0.85 1.9E-05 30.5 8.1 60 165-231 2-61 (72)
71 PRK07334 threonine dehydratase 92.4 0.7 1.5E-05 43.0 8.5 65 163-232 326-394 (403)
72 cd04930 ACT_TH ACT domain of t 92.2 0.65 1.4E-05 35.7 6.6 52 164-218 42-93 (115)
73 COG2844 GlnD UTP:GlnB (protein 92.1 0.94 2E-05 45.6 9.3 79 152-234 673-755 (867)
74 PRK13011 formyltetrahydrofolat 91.6 2 4.3E-05 38.3 10.1 70 163-237 7-77 (286)
75 COG4492 PheB ACT domain-contai 91.4 1.4 3E-05 34.8 7.6 67 160-231 69-136 (150)
76 PRK13010 purU formyltetrahydro 91.0 1.6 3.5E-05 38.9 8.9 68 163-235 9-79 (289)
77 KOG3560 Aryl-hydrocarbon recep 91.0 0.26 5.6E-06 47.2 3.9 41 61-101 31-75 (712)
78 KOG3559 Transcriptional regula 90.8 0.29 6.2E-06 45.4 3.9 42 61-102 7-52 (598)
79 cd04909 ACT_PDH-BS C-terminal 90.7 2.2 4.8E-05 28.8 7.5 35 165-202 3-37 (69)
80 cd04879 ACT_3PGDH-like ACT_3PG 90.5 2.2 4.8E-05 28.1 7.4 59 166-232 2-61 (71)
81 PRK06027 purU formyltetrahydro 90.3 2.5 5.5E-05 37.6 9.5 69 163-236 6-76 (286)
82 cd04882 ACT_Bt0572_2 C-termina 90.3 1.6 3.5E-05 28.7 6.5 56 166-232 2-59 (65)
83 cd04903 ACT_LSD C-terminal ACT 90.3 2.4 5.2E-05 28.0 7.4 59 166-232 2-61 (71)
84 cd04908 ACT_Bt0572_1 N-termina 90.2 3.2 6.9E-05 27.9 8.0 44 166-215 4-47 (66)
85 KOG4395 Transcription factor A 89.8 0.55 1.2E-05 40.8 4.6 52 56-107 175-229 (285)
86 TIGR00655 PurU formyltetrahydr 88.8 4.5 9.7E-05 35.9 9.8 63 165-232 2-66 (280)
87 KOG3558 Hypoxia-inducible fact 88.0 0.48 1E-05 46.6 3.4 46 56-101 47-96 (768)
88 PRK11092 bifunctional (p)ppGpp 86.9 4.9 0.00011 40.3 9.7 53 163-218 626-678 (702)
89 PRK11589 gcvR glycine cleavage 86.3 6.7 0.00014 32.8 8.9 69 164-237 96-169 (190)
90 cd04883 ACT_AcuB C-terminal AC 86.2 7.9 0.00017 26.0 7.9 59 165-232 3-63 (72)
91 PRK10872 relA (p)ppGpp synthet 85.8 3.5 7.5E-05 41.6 8.1 64 163-231 666-730 (743)
92 TIGR00691 spoT_relA (p)ppGpp s 85.7 6 0.00013 39.6 9.7 54 163-219 610-663 (683)
93 TIGR00119 acolac_sm acetolacta 85.6 6.3 0.00014 32.0 8.2 61 165-231 3-64 (157)
94 PRK11895 ilvH acetolactate syn 84.8 7 0.00015 31.9 8.2 61 165-231 4-65 (161)
95 PF05088 Bac_GDH: Bacterial NA 84.0 8.4 0.00018 41.9 10.3 73 162-237 488-564 (1528)
96 PRK11589 gcvR glycine cleavage 82.6 4.3 9.4E-05 34.0 6.2 64 162-232 7-70 (190)
97 PRK08198 threonine dehydratase 82.3 10 0.00022 35.1 9.3 68 160-232 324-395 (404)
98 cd04885 ACT_ThrD-I Tandem C-te 82.3 6.9 0.00015 26.6 6.2 60 167-232 2-61 (68)
99 cd04889 ACT_PDH-BS-like C-term 81.6 8.4 0.00018 24.7 6.2 34 167-203 2-35 (56)
100 PRK11899 prephenate dehydratas 81.0 12 0.00027 33.1 8.9 52 164-218 195-246 (279)
101 PF13710 ACT_5: ACT domain; PD 80.5 15 0.00033 24.8 7.5 53 174-230 1-54 (63)
102 KOG3582 Mlx interactors and re 80.1 0.91 2E-05 44.7 1.5 60 54-113 650-714 (856)
103 cd04901 ACT_3PGDH C-terminal A 79.6 2.4 5.3E-05 28.4 3.1 56 168-232 4-59 (69)
104 TIGR01127 ilvA_1Cterm threonin 79.1 15 0.00032 33.7 9.1 68 160-232 302-373 (380)
105 PRK11152 ilvM acetolactate syn 79.0 20 0.00044 25.4 8.0 60 165-231 5-65 (76)
106 TIGR01268 Phe4hydrox_tetr phen 78.8 9.7 0.00021 36.0 7.7 66 164-232 17-82 (436)
107 COG0317 SpoT Guanosine polypho 78.1 8.1 0.00018 38.7 7.4 54 163-219 627-680 (701)
108 PRK00227 glnD PII uridylyl-tra 78.1 15 0.00032 36.9 9.2 70 161-235 544-614 (693)
109 PRK13562 acetolactate synthase 75.1 18 0.00039 26.3 6.6 62 165-231 4-66 (84)
110 CHL00100 ilvH acetohydroxyacid 74.4 22 0.00047 29.4 7.9 64 165-234 4-68 (174)
111 PRK11898 prephenate dehydratas 74.0 19 0.00041 31.9 8.1 53 164-218 197-249 (283)
112 cd04922 ACT_AKi-HSDH-ThrA_2 AC 73.2 23 0.00049 23.1 7.8 61 165-234 3-64 (66)
113 COG3830 ACT domain-containing 72.8 9.8 0.00021 28.0 4.9 68 164-236 4-71 (90)
114 PRK06382 threonine dehydratase 72.4 23 0.00051 32.9 8.6 68 160-232 327-398 (406)
115 PRK06737 acetolactate synthase 72.0 33 0.00071 24.4 7.8 47 165-214 4-51 (76)
116 cd04902 ACT_3PGDH-xct C-termin 71.6 18 0.0004 24.1 6.0 31 168-201 4-34 (73)
117 COG0788 PurU Formyltetrahydrof 71.5 27 0.00058 31.0 8.1 65 162-232 6-73 (287)
118 cd04906 ACT_ThrD-I_1 First of 68.5 36 0.00078 24.1 7.1 49 164-217 2-50 (85)
119 COG0077 PheA Prephenate dehydr 67.8 34 0.00075 30.4 8.2 54 163-219 194-247 (279)
120 PRK10622 pheA bifunctional cho 67.6 36 0.00079 31.6 8.7 48 168-218 302-349 (386)
121 TIGR01270 Trp_5_monoox tryptop 63.7 26 0.00057 33.4 7.0 65 164-232 32-97 (464)
122 cd04890 ACT_AK-like_1 ACT doma 61.3 36 0.00078 22.1 5.6 23 175-198 13-35 (62)
123 PRK15385 magnesium transport p 60.2 89 0.0019 26.9 9.1 67 162-231 141-210 (225)
124 KOG4447 Transcription factor T 59.4 7.4 0.00016 31.4 2.2 44 62-105 29-74 (173)
125 cd04907 ACT_ThrD-I_2 Second of 59.3 61 0.0013 23.0 7.9 62 164-232 2-63 (81)
126 PF02120 Flg_hook: Flagellar h 58.4 57 0.0012 22.7 6.6 49 152-201 26-78 (85)
127 PRK08526 threonine dehydratase 58.2 49 0.0011 30.8 7.8 67 160-231 323-393 (403)
128 PF02344 Myc-LZ: Myc leucine z 57.4 13 0.00028 21.8 2.4 17 63-79 13-29 (32)
129 cd04937 ACT_AKi-DapG-BS_2 ACT 55.1 59 0.0013 21.5 7.4 58 166-234 4-62 (64)
130 cd04911 ACT_AKiii-YclM-BS_1 AC 54.0 45 0.00098 23.7 5.3 22 175-197 14-35 (76)
131 cd04919 ACT_AK-Hom3_2 ACT doma 53.9 59 0.0013 21.2 7.9 61 165-234 3-64 (66)
132 cd04912 ACT_AKiii-LysC-EC-like 53.5 71 0.0015 21.9 7.4 33 165-198 3-36 (75)
133 cd04934 ACT_AK-Hom3_1 CT domai 51.6 78 0.0017 21.9 7.4 33 165-198 3-36 (73)
134 cd04892 ACT_AK-like_2 ACT doma 50.6 61 0.0013 20.3 7.9 34 165-199 2-36 (65)
135 PF14689 SPOB_a: Sensor_kinase 50.4 54 0.0012 22.0 5.0 44 62-112 15-58 (62)
136 cd04932 ACT_AKiii-LysC-EC_1 AC 49.4 87 0.0019 21.7 8.5 23 175-198 14-36 (75)
137 PRK08178 acetolactate synthase 49.4 1.1E+02 0.0023 22.8 7.7 63 162-231 7-70 (96)
138 cd04920 ACT_AKiii-DAPDC_2 ACT 48.2 72 0.0016 21.1 5.4 49 175-234 13-61 (63)
139 cd04924 ACT_AK-Arch_2 ACT doma 47.8 74 0.0016 20.5 8.0 61 165-234 3-64 (66)
140 cd04916 ACT_AKiii-YclM-BS_2 AC 47.4 76 0.0016 20.5 8.0 61 165-234 3-64 (66)
141 COG3074 Uncharacterized protei 47.0 33 0.00072 24.0 3.5 24 93-116 13-36 (79)
142 PLN02705 beta-amylase 46.5 50 0.0011 32.7 5.9 28 53-80 82-109 (681)
143 TIGR02079 THD1 threonine dehyd 45.0 2.4E+02 0.0052 26.3 10.2 67 160-231 322-389 (409)
144 KOG3582 Mlx interactors and re 44.9 7.9 0.00017 38.5 0.3 61 53-116 785-850 (856)
145 PLN02317 arogenate dehydratase 43.9 1.5E+02 0.0033 27.6 8.5 51 164-217 284-348 (382)
146 cd04915 ACT_AK-Ectoine_2 ACT d 42.1 1E+02 0.0023 20.6 7.5 51 175-234 14-64 (66)
147 PF13840 ACT_7: ACT domain ; P 42.1 51 0.0011 22.1 3.9 37 161-198 4-42 (65)
148 PF04455 Saccharop_dh_N: LOR/S 41.5 1.1E+02 0.0023 23.1 5.9 55 175-232 14-70 (103)
149 PF07293 DUF1450: Protein of u 40.7 1E+02 0.0022 22.0 5.4 69 165-236 4-74 (78)
150 COG4747 ACT domain-containing 40.5 70 0.0015 25.0 4.8 38 165-205 5-42 (142)
151 PF06005 DUF904: Protein of un 40.2 52 0.0011 23.1 3.8 23 93-115 13-35 (72)
152 PRK08639 threonine dehydratase 39.9 1.5E+02 0.0032 27.7 8.0 68 160-232 333-401 (420)
153 TIGR00656 asp_kin_monofn aspar 36.3 2.3E+02 0.0049 26.1 8.5 67 158-235 332-399 (401)
154 COG2716 GcvR Glycine cleavage 35.9 1.7E+02 0.0036 24.3 6.6 67 164-235 93-164 (176)
155 cd04923 ACT_AK-LysC-DapG-like_ 35.7 1.1E+02 0.0025 19.2 7.4 23 175-198 13-35 (63)
156 COG2061 ACT-domain-containing 34.9 2.4E+02 0.0052 23.0 7.2 49 164-216 6-57 (170)
157 cd04936 ACT_AKii-LysC-BS-like_ 34.9 1.2E+02 0.0026 19.1 7.5 23 175-198 13-35 (63)
158 cd04935 ACT_AKiii-DAPDC_1 ACT 33.6 1.6E+02 0.0035 20.3 7.5 32 166-198 4-36 (75)
159 PRK15422 septal ring assembly 32.4 70 0.0015 22.9 3.4 24 93-116 13-36 (79)
160 cd04933 ACT_AK1-AT_1 ACT domai 31.9 1.8E+02 0.004 20.4 8.2 33 165-198 3-36 (78)
161 KOG0456 Aspartate kinase [Amin 31.5 3.9E+02 0.0085 25.4 8.9 36 159-195 389-425 (559)
162 PTZ00324 glutamate dehydrogena 31.4 3E+02 0.0066 29.0 9.0 81 151-232 215-299 (1002)
163 TIGR01124 ilvA_2Cterm threonin 30.5 2.7E+02 0.0058 26.8 8.2 65 160-231 322-386 (499)
164 cd04891 ACT_AK-LysC-DapG-like_ 30.4 1.4E+02 0.0029 18.4 5.3 24 175-199 11-34 (61)
165 PLN02551 aspartokinase 30.2 4.1E+02 0.0089 25.8 9.4 70 157-235 439-508 (521)
166 PRK07431 aspartate kinase; Pro 29.6 3.9E+02 0.0085 26.1 9.3 67 157-234 513-580 (587)
167 PRK07431 aspartate kinase; Pro 29.5 3.1E+02 0.0066 26.8 8.6 68 156-234 341-409 (587)
168 PRK08210 aspartate kinase I; R 29.0 3.4E+02 0.0074 25.0 8.4 68 156-234 332-400 (403)
169 COG0527 LysC Aspartokinases [A 28.7 3.6E+02 0.0077 25.7 8.6 69 156-235 376-445 (447)
170 PRK06635 aspartate kinase; Rev 28.5 3E+02 0.0066 25.2 8.0 41 157-198 334-375 (404)
171 PRK09224 threonine dehydratase 28.5 4.3E+02 0.0093 25.4 9.2 67 160-232 325-391 (504)
172 PRK12483 threonine dehydratase 28.2 3.8E+02 0.0083 26.0 8.8 53 160-217 342-394 (521)
173 PHA02568 J baseplate assembly 27.6 4E+02 0.0088 23.8 8.3 77 160-237 164-243 (300)
174 PRK09034 aspartate kinase; Rev 27.6 4.2E+02 0.0091 25.0 8.9 69 157-234 379-448 (454)
175 COG2716 GcvR Glycine cleavage 27.6 88 0.0019 25.9 3.7 41 163-206 5-45 (176)
176 PF05687 DUF822: Plant protein 27.4 79 0.0017 25.4 3.3 28 53-80 9-36 (150)
177 PRK13702 replication protein; 27.3 1.4E+02 0.0029 21.8 4.2 31 55-85 20-52 (85)
178 KOG4005 Transcription factor X 27.2 4.3E+02 0.0093 23.2 8.7 52 56-114 60-113 (292)
179 PF09849 DUF2076: Uncharacteri 27.0 2.1E+02 0.0045 25.0 6.2 47 67-115 6-72 (247)
180 cd04918 ACT_AK1-AT_2 ACT domai 26.7 1.9E+02 0.0042 19.0 7.4 51 175-234 13-63 (65)
181 PRK00341 hypothetical protein; 26.5 2E+02 0.0043 21.0 5.2 51 164-218 18-71 (91)
182 PRK06635 aspartate kinase; Rev 26.2 2.8E+02 0.0061 25.4 7.4 41 158-200 257-297 (404)
183 cd04917 ACT_AKiii-LysC-EC_2 AC 25.5 2E+02 0.0043 18.7 7.7 59 165-234 3-62 (64)
184 PRK06291 aspartate kinase; Pro 24.8 4.9E+02 0.011 24.6 8.8 69 157-234 392-461 (465)
185 TIGR02865 spore_II_E stage II 24.8 2.2E+02 0.0048 29.0 6.8 60 176-236 464-523 (764)
186 PRK13669 hypothetical protein; 24.2 2.3E+02 0.005 20.3 4.9 68 166-236 5-74 (78)
187 PF14992 TMCO5: TMCO5 family 24.0 1.1E+02 0.0025 27.2 4.0 30 91-120 144-173 (280)
188 PF01545 Cation_efflux: Cation 23.6 4.6E+02 0.01 22.3 8.5 61 176-236 204-266 (284)
189 cd04921 ACT_AKi-HSDH-ThrA-like 23.6 2.4E+02 0.0052 19.0 8.1 34 165-199 3-37 (80)
190 cd05006 SIS_GmhA Phosphoheptos 23.3 3.4E+02 0.0074 21.6 6.6 74 158-237 98-174 (177)
191 PF00585 Thr_dehydrat_C: C-ter 23.0 1.4E+02 0.0031 21.5 3.8 53 161-217 8-60 (91)
192 TIGR00656 asp_kin_monofn aspar 22.8 5.2E+02 0.011 23.6 8.4 42 157-199 254-296 (401)
193 PRK09084 aspartate kinase III; 22.4 6.5E+02 0.014 23.7 9.1 40 158-198 301-341 (448)
194 TIGR01269 Tyr_3_monoox tyrosin 22.3 3.6E+02 0.0077 25.8 7.1 53 176-232 49-106 (457)
195 PRK00907 hypothetical protein; 21.1 3.3E+02 0.0071 20.0 5.4 51 163-217 17-71 (92)
196 TIGR00657 asp_kinases aspartat 20.9 5.9E+02 0.013 23.7 8.5 41 157-198 372-413 (441)
197 KOG2391 Vacuolar sorting prote 20.7 6.7E+02 0.015 23.1 10.0 15 101-115 249-263 (365)
198 PF04508 Pox_A_type_inc: Viral 20.5 1.4E+02 0.0031 16.2 2.4 16 100-115 3-18 (23)
199 PRK00227 glnD PII uridylyl-tra 20.5 1.8E+02 0.0039 29.3 5.1 59 164-234 632-690 (693)
200 COG0849 ftsA Cell division ATP 20.3 4.6E+02 0.0099 24.8 7.5 59 179-237 59-119 (418)
201 PF12344 UvrB: Ultra-violet re 20.3 1.5E+02 0.0033 18.8 3.0 28 57-84 10-37 (44)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.48 E-value=7.4e-14 Score=93.85 Aligned_cols=49 Identities=47% Similarity=0.699 Sum_probs=46.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcCCCC-----CCCChhhHHHHHHHHHHHHH
Q 026436 56 AQDHVIAERKRREKLNQRFIALSALVPGL-----KKTDKASILGDSIKYLKQLQ 104 (238)
Q Consensus 56 ~~~h~~~Er~RR~~i~~~~~~L~~lvP~~-----~k~~k~~il~~ai~yi~~L~ 104 (238)
+..|+..||+||++||+.|..|+.+||.. .+.+|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999976 67999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.47 E-value=9.4e-14 Score=94.52 Aligned_cols=54 Identities=44% Similarity=0.711 Sum_probs=50.4
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 026436 54 SHAQDHVIAERKRREKLNQRFIALSALVPGL---KKTDKASILGDSIKYLKQLQERV 107 (238)
Q Consensus 54 ~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~---~k~~k~~il~~ai~yi~~L~~~~ 107 (238)
..+..|+..||+||++||..|..|+++||.. .+++|++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999998 89999999999999999999875
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.41 E-value=5.1e-13 Score=88.83 Aligned_cols=49 Identities=45% Similarity=0.641 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 026436 60 VIAERKRREKLNQRFIALSALVPG---LKKTDKASILGDSIKYLKQLQERVK 108 (238)
Q Consensus 60 ~~~Er~RR~~i~~~~~~L~~lvP~---~~k~~k~~il~~ai~yi~~L~~~~~ 108 (238)
+..||+||++||+.|..|+++||. ..+.+|++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 5789999999999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.26 E-value=1.8e-11 Score=111.80 Aligned_cols=61 Identities=34% Similarity=0.595 Sum_probs=54.6
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 026436 51 RDPSHAQDHVIAERKRREKLNQRFIALSALVPGL----KKTDKASILGDSIKYLKQLQERVKALE 111 (238)
Q Consensus 51 ~~~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~----~k~~k~~il~~ai~yi~~L~~~~~~l~ 111 (238)
|...+|..||++|||||++||++|.+|..|||.+ .+..|..||..+++||++||+..++..
T Consensus 229 rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~ 293 (411)
T KOG1318|consen 229 RDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAR 293 (411)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 4556889999999999999999999999999988 467799999999999999999877444
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.06 E-value=2.2e-10 Score=93.64 Aligned_cols=65 Identities=34% Similarity=0.489 Sum_probs=57.1
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhcCCCCC-------CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSALVPGLK-------KTDKASILGDSIKYLKQLQERVKALEEQTSKK 117 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~~-------k~~k~~il~~ai~yi~~L~~~~~~l~~~~~~~ 117 (238)
..++..|..+||+||+.||..|..|+.|||.+. |..|+.||.++|+||.+|++++.+.+++....
T Consensus 60 ~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 60 DRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999999999999763 66799999999999999999998888876543
No 6
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.64 E-value=4e-07 Score=64.98 Aligned_cols=67 Identities=7% Similarity=0.211 Sum_probs=54.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
+|+|.|++ |||+|.+|..+|-.+ |++|.+|.|+|.|+++.+ +|.+.-.++..++-++..+.|+++|.
T Consensus 3 vveV~~~D--RpGLL~~i~~~l~~~-~l~I~~A~I~T~gera~D-~FyV~d~~g~kl~~~~~~~~l~~~L~ 69 (75)
T cd04897 3 VVTVQCRD--RPKLLFDVVCTLTDM-DYVVFHATIDTDGDDAHQ-EYYIRHKDGRTLSTEGERQRVIKCLE 69 (75)
T ss_pred EEEEEeCC--cCcHHHHHHHHHHhC-CeEEEEEEEeecCceEEE-EEEEEcCCCCccCCHHHHHHHHHHHH
Confidence 58899999 999999999999999 999999999999999988 45566666666765544555555443
No 7
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.60 E-value=6e-07 Score=63.57 Aligned_cols=67 Identities=13% Similarity=0.290 Sum_probs=57.3
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
+|+|.+.+ ++|+|.+|.++|..+ ||+|..|.|+|.|+++.+. |.+.-.++..+.-.+..+.|+.+|.
T Consensus 3 viev~a~D--RpGLL~~i~~~l~~~-gl~I~~AkIsT~Gerv~Dv-FyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSAR--KPGILLEAVQVLTDL-DLCITKAYISSDGGWFMDV-FHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECC--cCCHHHHHHHHHHHC-CcEEEEEEEeecCCeEEEE-EEEECCCCCCCCCHHHHHHHHHHhc
Confidence 68899999 999999999999999 9999999999999999984 5556556666766677788888775
No 8
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.51 E-value=1.3e-06 Score=62.25 Aligned_cols=67 Identities=25% Similarity=0.358 Sum_probs=53.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEE--EecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVL--PFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALRK 236 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is--~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~ 236 (238)
+|+|.|.+ |+|+|.+|..+|..+ |++|..|.|+ |.|+++.+.|.+ ..+ +..++-.+-.+.|+++|..
T Consensus 2 vlev~a~D--RpGLL~~i~~~l~~~-~l~i~~AkI~~~T~Gerv~D~Fyv-~~~-g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVD--QKGLLYDILRTSKDC-NIQISYGRFSSKVKGYREVDLFIV-QSD-GKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCC--cccHHHHHHHHHHHC-CeEEEEEEEecCcccCEEEEEEEE-eCC-CCccCCHHHHHHHHHHHHH
Confidence 57899999 999999999999999 9999999999 999999986555 543 4346544555556655543
No 9
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.45 E-value=3.8e-06 Score=59.29 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=56.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe-cCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhhC
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF-GNSTVDITVVAQMDVESDVTVKDLVKNLQPALRKFM 238 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~-~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~~~ 238 (238)
.|.|.|+. ++|+|.+|..+|..+ ||+|++|.+.+. ++++++ +|.+.-.++..+..++..+.|++.|.+.+
T Consensus 3 ~i~v~~~D--r~gLl~~i~~~l~~~-~l~I~~A~i~T~~~~~v~D-~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 3 EVFIYTPD--RPGLFARIAGALDQL-GLNILDARIFTTRDGYALD-TFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEecC--CCCHHHHHHHHHHHC-CCCeEEeEEEEeCCCeEEE-EEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 57889999 999999999999999 999999999888 577887 45555455555655667777888876653
No 10
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.44 E-value=3.2e-07 Score=90.79 Aligned_cols=63 Identities=30% Similarity=0.527 Sum_probs=57.9
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSALVPGL-KKTDKASILGDSIKYLKQLQERVKALEEQTS 115 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~-~k~~k~~il~~ai~yi~~L~~~~~~l~~~~~ 115 (238)
..+|.+||++|||.|..||+++.+|+.+||+. .|..|..+|..||+||++|+...+.+..+..
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~ 337 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENA 337 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhh
Confidence 46799999999999999999999999999987 8999999999999999999998888876554
No 11
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.43 E-value=2.4e-06 Score=73.42 Aligned_cols=66 Identities=23% Similarity=0.369 Sum_probs=55.7
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHhhcCCCC--CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026436 51 RDPSHAQDHVIAERKRREKLNQRFIALSALVPGL--KKTD-KASILGDSIKYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 51 ~~~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~--~k~~-k~~il~~ai~yi~~L~~~~~~l~~~~~~ 116 (238)
.....+..||.-||+||+.|++.|..|+.+||.. .+.. .++||..|..||+.|+.+....+..+++
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~ 123 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIED 123 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 3455788899999999999999999999999987 3333 6899999999999999988877765554
No 12
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.42 E-value=3.3e-06 Score=60.33 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=52.6
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE-ecCeEEEEEEEEEecCCccc---CHHHHHHHHHHHHHhhC
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP-FGNSTVDITVVAQMDVESDV---TVKDLVKNLQPALRKFM 238 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~-~~~~~l~~~i~~q~~~~~~~---~~~dL~~~L~~al~~~~ 238 (238)
++++|.|.. ++|+|.++..+|..+ ||+|.+|.|.+ .++.+++. |.+.-.++... ..++|.+.|..+|...|
T Consensus 1 ~~~ei~~~D--r~gLfa~i~~~l~~~-~l~I~~A~I~Tt~~~~v~D~-F~V~d~~~~~~~~~~~~~l~~~L~~~L~~~~ 75 (76)
T cd04927 1 FLLKLFCSD--RKGLLHDVTEVLYEL-ELTIERVKVSTTPDGRVLDL-FFITDARELLHTKKRREETYDYLRAVLGDSM 75 (76)
T ss_pred CEEEEEECC--CCCHHHHHHHHHHHC-CCeEEEEEEEECCCCEEEEE-EEEeCCCCCCCCHHHHHHHHHHHHHHHchhc
Confidence 468999999 999999999999999 99999999986 78888884 44443333311 23456666666665443
No 13
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.38 E-value=3.5e-07 Score=90.17 Aligned_cols=51 Identities=27% Similarity=0.503 Sum_probs=47.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 026436 56 AQDHVIAERKRREKLNQRFIALSALVPGL----KKTDKASILGDSIKYLKQLQER 106 (238)
Q Consensus 56 ~~~h~~~Er~RR~~i~~~~~~L~~lvP~~----~k~~k~~il~~ai~yi~~L~~~ 106 (238)
+..|+.+|||||++||..|.+|.++||.+ -|+||.+||..||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999987 5999999999999999988874
No 14
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.36 E-value=3.1e-07 Score=79.88 Aligned_cols=57 Identities=32% Similarity=0.438 Sum_probs=49.1
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhcCCCC--------CCCChhhHHHHHHHHHHHHHHHHHH
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSALVPGL--------KKTDKASILGDSIKYLKQLQERVKA 109 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~--------~k~~k~~il~~ai~yi~~L~~~~~~ 109 (238)
..++..|-+.||+||++||..+.+|+.|||.. .|++|+.||+-|++|++.|+.....
T Consensus 30 ~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 30 QYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 34566789999999999999999999999943 6788999999999999999875443
No 15
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=1.7e-05 Score=56.20 Aligned_cols=68 Identities=9% Similarity=0.185 Sum_probs=52.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecC-CcccCHHHHHHHHHHHHHh
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDV-ESDVTVKDLVKNLQPALRK 236 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~-~~~~~~~dL~~~L~~al~~ 236 (238)
+|+|.+.. ++|+|.+|..+|..+ |++|+.|.+.+.++.+++ +|.+.-.+ +..+..++-.+.|+++|.+
T Consensus 2 ~~~v~~~D--r~gLl~~i~~~l~~~-~lnI~~A~i~t~~~~~~d-~f~V~d~~~~~~~~~~~~~~~i~~~L~~ 70 (74)
T cd04925 2 AIELTGTD--RPGLLSEVFAVLADL-HCNVVEARAWTHNGRLAC-VIYVRDEETGAPIDDPIRLASIEDRLDN 70 (74)
T ss_pred EEEEEECC--CCCHHHHHHHHHHHC-CCcEEEEEEEEECCEEEE-EEEEEcCcCCCCCCCHHHHHHHHHHHHH
Confidence 57899999 999999999999999 999999999999998887 45554333 4435444555666666654
No 16
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.97 E-value=0.00013 Score=50.31 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=55.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALRKF 237 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~~ 237 (238)
.|.|.+.. ++|+|.+|+.+|.++ +++|.++.+.+.++.+++ +|.++..++.... .+..+.|+++|.+.
T Consensus 2 ~l~v~~~d--~~gll~~i~~~l~~~-~~~I~~~~~~~~~~~~~~-~f~i~~~~~~~~~-~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALD--RPGLLADVTRVLAEL-GLNIHSAKIATLGERAED-VFYVTDADGQPLD-PERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcC--CccHHHHHHHHHHHC-CCeEEEEEEEecCCEEEE-EEEEECCCCCcCC-HHHHHHHHHHHHhh
Confidence 47788999 999999999999999 999999999998887764 6777766655544 46677788888664
No 17
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.96 E-value=6.4e-06 Score=72.29 Aligned_cols=55 Identities=33% Similarity=0.456 Sum_probs=48.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcCCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 026436 56 AQDHVIAERKRREKLNQRFIALSALVPG--LKKTDKASILGDSIKYLKQLQERVKAL 110 (238)
Q Consensus 56 ~~~h~~~Er~RR~~i~~~~~~L~~lvP~--~~k~~k~~il~~ai~yi~~L~~~~~~l 110 (238)
|.--|..||+|-+-||..|..||+|+|. +.|.+|+.||+.+.+||.+|+.+.-+|
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 4455778999999999999999999996 489999999999999999998865554
No 18
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.93 E-value=3.3e-05 Score=55.53 Aligned_cols=50 Identities=32% Similarity=0.588 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026436 67 REKLNQRFIALSALVPGL------KKTDKASILGDSIKYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 67 R~~i~~~~~~L~~lvP~~------~k~~k~~il~~ai~yi~~L~~~~~~l~~~~~~ 116 (238)
-+.|++.+..|+.|+|.. .+..-+-||+++++||+.|+.+|..|.+.+..
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~ 74 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSE 74 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999964 45566789999999999999999999997654
No 19
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.92 E-value=3.5e-05 Score=66.08 Aligned_cols=61 Identities=23% Similarity=0.409 Sum_probs=52.2
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHH-hhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIAL-SALVPGL-KKTDKASILGDSIKYLKQLQERVKALEEQ 113 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L-~~lvP~~-~k~~k~~il~~ai~yi~~L~~~~~~l~~~ 113 (238)
.-+|..-.+.||||=.|+|+.|.+| |.-.++. ...-|..||..||+||..||.-++++.+.
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3356667889999999999999999 4667776 66899999999999999999988888763
No 20
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.71 E-value=0.00051 Score=48.26 Aligned_cols=66 Identities=12% Similarity=0.213 Sum_probs=50.8
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
.|.|.++. ++|+|.+|..+|.++ |++|+++.+.+.++..+. +|.++-.++.... .+..+.|+++|.
T Consensus 3 ri~V~~~D--~~Gll~~i~~~l~~~-~lnI~sa~i~t~~~~~~d-~f~v~~~~~~~~~-~~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTED--RVGLLSDVTRVFREN-GLTVTRAEISTQGDMAVN-VFYVTDANGNPVD-PKTIEAVRQEIG 68 (72)
T ss_pred EEEEEECC--ccCHHHHHHHHHHHC-CcEEEEEEEecCCCeEEE-EEEEECCCCCcCC-HHHHHHHHHHhc
Confidence 46678888 999999999999999 999999999888776664 6666655555453 356667777663
No 21
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.68 E-value=0.00028 Score=71.73 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=57.3
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALRK 236 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~ 236 (238)
.+.-..|+|.+.+ ++|+|.+|.++|..+ |++|.+|.|+|.|+++.+++. ++-.++..++ .+..+.|+++|..
T Consensus 805 s~~~TvlEV~a~D--RpGLL~~I~~~l~~~-~l~I~~AkI~T~gera~DvFy-V~~~~g~~l~-~~~~~~l~~~L~~ 876 (884)
T PRK05007 805 TDRRSYMELIALD--QPGLLARVGKIFADL-GISLHGARITTIGERVEDLFI-LATADRRALN-EELQQELRQRLTE 876 (884)
T ss_pred CCCeEEEEEEeCC--chHHHHHHHHHHHHC-CcEEEEEEEeccCceEEEEEE-EEcCCCCcCC-HHHHHHHHHHHHH
Confidence 3556789999999 999999999999999 999999999999999998544 4544555666 4455566665543
No 22
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.67 E-value=0.00015 Score=62.32 Aligned_cols=62 Identities=27% Similarity=0.378 Sum_probs=53.7
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHhhcCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 026436 52 DPSHAQDHVIAERKRREKLNQRFIALSALVPG----LKKTDKASILGDSIKYLKQLQERVKALEEQ 113 (238)
Q Consensus 52 ~~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~----~~k~~k~~il~~ai~yi~~L~~~~~~l~~~ 113 (238)
....+..+|..||+|=+.+|..|..||.+||. .+|.+|..+|.-||.||++|+.-++.-...
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 44566778899999999999999999999995 467899999999999999999887776643
No 23
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.0021 Score=44.98 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=48.6
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe-cCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF-GNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~-~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.|-|.|+. ++|+|.+|..+|..+ ||+|+.|.+.+. ++.+++ +|.+.-.++ -..++|-++|+.||
T Consensus 3 eI~V~~~D--r~gLFa~iag~L~~~-~LnI~~A~i~tt~dG~~LD-tF~V~d~~~--~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGD--KPKLLSQLSSLLGDL-GLNIAEAHAFSTDDGLALD-IFVVTGWKR--GETAALGHALQKEI 67 (68)
T ss_pred EEEEEECC--CcchHHHHHHHHHHC-CCceEEEEEEEcCCCeEEE-EEEEecCCc--cchHHHHHHHHHhh
Confidence 46688888 999999999999999 999999998765 466776 455543222 23557788887776
No 24
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.40 E-value=0.0011 Score=67.34 Aligned_cols=79 Identities=14% Similarity=0.247 Sum_probs=60.7
Q ss_pred CeeeEE--eeCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHH
Q 026436 153 PEIEVR--VSDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNL 230 (238)
Q Consensus 153 ~~V~V~--~~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L 230 (238)
+.|.+. ..+.-..|+|.+.+ ++|+|.+|.++|.++ |++|..|.|+|.|+++.+++. +.-.++..++-++. +.|
T Consensus 771 ~~V~~dn~~s~~~T~iev~a~D--rpGLL~~I~~~l~~~-~l~i~~AkI~T~gerv~D~Fy-v~~~~g~~l~~~~~-~~l 845 (854)
T PRK01759 771 TEVRFLNEEKQEQTEMELFALD--RAGLLAQVSQVFSEL-NLNLLNAKITTIGEKAEDFFI-LTNQQGQALDEEER-KAL 845 (854)
T ss_pred CEEEEccCCCCCeEEEEEEeCC--chHHHHHHHHHHHHC-CCEEEEEEEcccCceEEEEEE-EECCCCCcCChHHH-HHH
Confidence 445542 23445789999999 999999999999999 999999999999999998554 44455555664444 777
Q ss_pred HHHHHh
Q 026436 231 QPALRK 236 (238)
Q Consensus 231 ~~al~~ 236 (238)
+++|..
T Consensus 846 ~~~L~~ 851 (854)
T PRK01759 846 KSRLLS 851 (854)
T ss_pred HHHHHH
Confidence 777654
No 25
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.37 E-value=0.0038 Score=42.51 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=51.7
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALRKF 237 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~~ 237 (238)
.|.|.|.. ++|+|.+|+.+|.++ |+.|.++.+.+.++... ..|.+.-.++...+ ++-.+.|+++|...
T Consensus 2 ~l~i~~~d--~~g~l~~i~~~l~~~-~~~I~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPD--RPGLLADITRVLADL-GLNIHDARISTTGERAL-DVFYVTDSDGRPLD-PERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCC--CCCHHHHHHHHHHHC-CCeEEEEEEeecCCEEE-EEEEEECCCCCcCC-HHHHHHHHHHHHhh
Confidence 46788998 999999999999999 99999999988877544 46666655544433 45666777777654
No 26
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.37 E-value=0.0014 Score=66.90 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=58.5
Q ss_pred CeeeEEe--eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCH----HHH
Q 026436 153 PEIEVRV--SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTV----KDL 226 (238)
Q Consensus 153 ~~V~V~~--~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~----~dL 226 (238)
+.|.+.. .++-..|.|.+.. ++|+|.+|..+|..+ ||+|+.|.|.|.++++++ +|.+.-.++..++. ++|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~D--rpGLLa~I~~~L~~~-~l~I~~AkI~T~g~~v~D-~F~V~d~~g~~l~~~~~~~~l 877 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPD--RPGLLARIGRIFLEF-DLSLQNAKIATLGERVED-VFFITDADNQPLSDPQLCSRL 877 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECC--CCCHHHHHHHHHHHC-CCEEEEeEEEecCCEEEE-EEEEECCCCCCCCCHHHHHHH
Confidence 4455432 3456789999999 999999999999999 999999999999999998 45555445554543 345
Q ss_pred HHHHHHHH
Q 026436 227 VKNLQPAL 234 (238)
Q Consensus 227 ~~~L~~al 234 (238)
.+.|..+|
T Consensus 878 ~~~L~~~L 885 (895)
T PRK00275 878 QDAICEQL 885 (895)
T ss_pred HHHHHHHH
Confidence 55555555
No 27
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.35 E-value=0.0018 Score=65.73 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=59.6
Q ss_pred CeeeEEe--eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHH
Q 026436 153 PEIEVRV--SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNL 230 (238)
Q Consensus 153 ~~V~V~~--~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L 230 (238)
+.|.+.. .++-..|.|.+.. ++|+|.+|..+|..+ |++|..|.|+|.++++++. |.++-.++..++.++. +.|
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~D--rpGLLa~Ia~~l~~~-~l~I~~AkI~T~g~~a~D~-F~V~d~~g~~~~~~~~-~~l 858 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPD--RPGLLADVAHVLRMQ-HLRVHDARIATFGERAEDQ-FQITDEHDRPLSESAR-QAL 858 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCC--cCcHHHHHHHHHHHC-CCeEEEeEEEecCCEEEEE-EEEECCCCCcCChHHH-HHH
Confidence 4555543 3456789999999 999999999999999 9999999999999999984 5555444444554443 666
Q ss_pred HHHHHh
Q 026436 231 QPALRK 236 (238)
Q Consensus 231 ~~al~~ 236 (238)
+++|..
T Consensus 859 ~~~L~~ 864 (869)
T PRK04374 859 RDALCA 864 (869)
T ss_pred HHHHHH
Confidence 666544
No 28
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.24 E-value=0.0025 Score=65.33 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=59.2
Q ss_pred CeeeEEe--eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHH
Q 026436 153 PEIEVRV--SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNL 230 (238)
Q Consensus 153 ~~V~V~~--~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L 230 (238)
|.|.+.- .++...|.|.+.. ++|+|.+|..+|.++ |++|..|.|.|.++++.+ +|.+.-.++..+...+....|
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~D--rpGLl~~I~~~l~~~-gl~I~~A~I~T~~~~~~D-~F~v~d~~g~~i~~~~~~~~l 906 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRD--RPGLLYDLTRALSDL-NLNIASAHIATYGERAVD-VFYVTDLFGLKITNEARQAAI 906 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECC--cCcHHHHHHHHHHHC-CceEEEEEEEEcCCEEEE-EEEEeCCCCCcCCCHHHHHHH
Confidence 4555532 3445789999999 999999999999999 999999999999999987 556665555555443334445
Q ss_pred HHHHHh
Q 026436 231 QPALRK 236 (238)
Q Consensus 231 ~~al~~ 236 (238)
+++|..
T Consensus 907 ~~~L~~ 912 (931)
T PRK05092 907 RRALLA 912 (931)
T ss_pred HHHHHH
Confidence 555443
No 29
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.08 E-value=0.014 Score=41.27 Aligned_cols=65 Identities=9% Similarity=0.158 Sum_probs=48.6
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.+.|.+.+++ ++|++..|..+|.++ |.+|+.++.++.++.+. ..+.+.... -+.++|...|....
T Consensus 2 ~~vItv~G~D--rpGiv~~v~~~l~~~-g~ni~d~~~~~~~~~f~-~~~~v~~~~---~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPD--RPGIVAAVTGVLAEH-GCNIEDSRQAVLGGRFT-LIMLVSIPE---DSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE----TTHHHHHHHHHHCT-T-EEEEEEEEEETTEEE-EEEEEEESH---HHHHHHHHHHHHHH
T ss_pred EEEEEEEecC--CCcHHHHHHHHHHHC-CCcEEEEEEEEEcCeEE-EEEEEEeCc---ccHHHHHHHHHHHH
Confidence 4688999999 999999999999999 99999999999999864 566776652 24455555555543
No 30
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.00 E-value=0.0062 Score=61.29 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=57.2
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
+-..|.|.+.. ++|+|.+|..+|..+ |++|.+|.|.|.++.+++ +|.+.-.++..++- + .+.|+++|.
T Consensus 706 ~~t~i~V~a~D--rpGLla~Ia~~L~~~-~lnI~~AkI~T~g~~a~D-~F~V~d~~g~~~~~-~-~~~l~~~L~ 773 (774)
T PRK03381 706 DATVLEVRAAD--RPGLLARLARALERA-GVDVRWARVATLGADVVD-VFYVTGAAGGPLAD-A-RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEeCC--chhHHHHHHHHHHHC-CCeEEEEEEeecCCeEEE-EEEEECCCCCcCch-H-HHHHHHHhh
Confidence 45789999999 999999999999999 999999999999999987 56666666666663 3 778887774
No 31
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.91 E-value=0.0072 Score=61.39 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=62.1
Q ss_pred CeeeEE--eeCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHH
Q 026436 153 PEIEVR--VSDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNL 230 (238)
Q Consensus 153 ~~V~V~--~~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L 230 (238)
+.|.+. ..++-..|.|.|.+ +||+|.+|.++|..+ |++|.++.|.|.++++.+ +|.++...+..++- +..+.|
T Consensus 767 ~~V~~d~~~s~~~t~~~v~~~D--rpGll~~i~~~l~~~-~~~i~~a~i~t~~~~~~d-~F~v~~~~g~~~~~-~~~~~l 841 (850)
T TIGR01693 767 PRVTILNTASRKATIMEVRALD--RPGLLARVGRTLEEL-GLSIQSAKITTFGEKAED-VFYVTDLFGLKLTD-EEEQRL 841 (850)
T ss_pred CeEEEccCCCCCeEEEEEEECC--ccHHHHHHHHHHHHC-CCeEEEEEEEecCcccee-EEEEECCCCCCCCH-HHHHHH
Confidence 344442 23445789999999 999999999999999 999999999999998886 56666666666664 566777
Q ss_pred HHHHHhh
Q 026436 231 QPALRKF 237 (238)
Q Consensus 231 ~~al~~~ 237 (238)
+++|...
T Consensus 842 ~~~L~~~ 848 (850)
T TIGR01693 842 LEVLAAS 848 (850)
T ss_pred HHHHHHH
Confidence 7777543
No 32
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.91 E-value=0.0066 Score=61.68 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=53.7
Q ss_pred CCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEE-EecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 161 DRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVL-PFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 161 ~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is-~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
++...|.|.+.. ++|+|.+|..+|..+ ||+|+.|.|. +.++.+++ +|.++-.++..+..++..+.|.++|
T Consensus 666 ~~~t~i~V~~~D--rpgLla~i~~~L~~~-~l~I~~A~I~tt~~g~~lD-~F~V~~~~g~~~~~~~~~~~i~~~L 736 (850)
T TIGR01693 666 SGGTEVFIYAPD--QPGLFAKVAGALAML-SLSVHDAQVNTTKDGVALD-TFVVQDLFGSPPAAERVFQELLQGL 736 (850)
T ss_pred CCeEEEEEEeCC--CCcHHHHHHHHHHHC-CCeEEEEEEEEecCCEEEE-EEEEECCCCCCCCcHHHHHHHHHHH
Confidence 456789999999 999999999999999 9999999998 66888887 5666656555565444344444444
No 33
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.82 E-value=0.0087 Score=60.87 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=52.8
Q ss_pred CCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 026436 161 DRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALRK 236 (238)
Q Consensus 161 ~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~ 236 (238)
++-..|.|.+.. ++|+|.+|..+|..+ |++|..|.|.|.++++++.+. +. +. ....++-.+.|+++|.+
T Consensus 784 ~~~T~i~V~a~D--rpGLLa~Ia~~L~~~-~l~I~~AkI~T~~~~v~DvF~-V~--~~-~~~~~~~~~~l~~~L~~ 852 (856)
T PRK03059 784 GQYYILSVSAND--RPGLLYAIARVLAEH-RVSVHTAKINTLGERVEDTFL-ID--GS-GLSDNRLQIQLETELLD 852 (856)
T ss_pred CCEEEEEEEeCC--cchHHHHHHHHHHHC-CCeEEEEEEeecCCEEEEEEE-Ec--CC-CCCCHHHHHHHHHHHHH
Confidence 456789999999 999999999999999 999999999999999988544 43 21 23333445556655544
No 34
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.80 E-value=0.02 Score=38.40 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=34.4
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN 204 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~ 204 (238)
.|.|.|+. ++|.|.+|+.+|.++ |++|..+.+.+.++
T Consensus 2 ~v~v~~~d--rpG~l~~v~~~la~~-~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPD--RPGILADVTEILADH-GINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEET--STTHHHHHHHHHHHT-TEEEEEEEEEEESS
T ss_pred EEEEEcCC--CCCHHHHHHHHHHHc-CCCHHHeEEEecCC
Confidence 57789999 999999999999999 99999999988877
No 35
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.74 E-value=0.028 Score=39.78 Aligned_cols=52 Identities=29% Similarity=0.328 Sum_probs=40.8
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec-CeEEEEEEEEEecC
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG-NSTVDITVVAQMDV 217 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~-~~~l~~~i~~q~~~ 217 (238)
.+.|+|.+.. ++|+|.+|..+|.+. |+.|.+.++.... +....+.|.+++.+
T Consensus 6 ~~~l~i~~~d--r~GlL~dI~~~i~~~-~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 6 PVRLRIEAED--RPGLLADITSVISEN-GVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp EEEEEEEEE----TTHHHHHHHHHHCS-SSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred EEEEEEEEEc--CCCHHHHHHHHHHHC-CCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 4567888888 999999999999999 9999999988863 55555678888766
No 36
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.70 E-value=0.015 Score=59.29 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=56.8
Q ss_pred CeeeEEe--eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC-eEEEEEEEEEecCCcccCH---HHH
Q 026436 153 PEIEVRV--SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN-STVDITVVAQMDVESDVTV---KDL 226 (238)
Q Consensus 153 ~~V~V~~--~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~-~~l~~~i~~q~~~~~~~~~---~dL 226 (238)
|.|.+.. .++...|.|+|.. ++|+|..|..+|..+ ||+|+.|.|.|.++ .+++ +|.+.-.++..++. +.|
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~D--rpGLfa~Ia~~La~~-~L~I~~A~I~T~~dg~alD-~F~V~d~~g~~~~~~~~~~I 764 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPD--RPYLFAAVCAELDRR-NLSVHDAQIFTSRDGMAMD-TFIVLEPDGSPLSQDRHQVI 764 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecC--CcCHHHHHHHHHHHC-CCEEEEEEEEEcCCCeEEE-EEEEECCCCCCCCHHHHHHH
Confidence 4455533 4457789999999 999999999999999 99999999887766 7787 45555455555543 235
Q ss_pred HHHHHHHH
Q 026436 227 VKNLQPAL 234 (238)
Q Consensus 227 ~~~L~~al 234 (238)
.+.|..+|
T Consensus 765 ~~~L~~aL 772 (884)
T PRK05007 765 RKALEQAL 772 (884)
T ss_pred HHHHHHHH
Confidence 55555554
No 37
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.68 E-value=0.015 Score=59.07 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=57.0
Q ss_pred CCeeeEE--eeCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE-ecCeEEEEEEEEEecCCcccCHHHHHH
Q 026436 152 LPEIEVR--VSDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP-FGNSTVDITVVAQMDVESDVTVKDLVK 228 (238)
Q Consensus 152 ~~~V~V~--~~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~-~~~~~l~~~i~~q~~~~~~~~~~dL~~ 228 (238)
.+.|.+. ...+...|.|.++. ++|+|.+|..+|..+ ||+|+.|.|.| .++.+++. |.+.-.++..++. +..+
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~D--rpGLfa~Ia~~L~~~-~L~I~~A~I~T~~~g~alD~-F~V~d~~g~~~~~-~~~~ 738 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQD--QANLFLKVVSTIGAK-KLSIHDAQIITSQDGYVLDS-FIVTELNGKLLEF-DRRR 738 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecC--CccHHHHHHHHHHHC-CCeEEEEEEEEccCCEEEEE-EEEeCCCCCCCCH-HHHH
Confidence 3455553 34456789999999 999999999999999 99999999877 78888874 5555445555553 3333
Q ss_pred HHHHHHH
Q 026436 229 NLQPALR 235 (238)
Q Consensus 229 ~L~~al~ 235 (238)
.|+.+|.
T Consensus 739 ~l~~~L~ 745 (854)
T PRK01759 739 QLEQALT 745 (854)
T ss_pred HHHHHHH
Confidence 4444443
No 38
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0097 Score=59.23 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=61.0
Q ss_pred CeeeEE--eeCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHH
Q 026436 153 PEIEVR--VSDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNL 230 (238)
Q Consensus 153 ~~V~V~--~~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L 230 (238)
|.|... ..+.-..+++.+.. ++|+|..|..+|..+ +|++.+|.|+|+|.++-+ +|.++.-.+..++ .++.+.|
T Consensus 779 p~v~i~~t~~~~~t~lEv~alD--RpGLLa~v~~v~~dl-~l~i~~AkItT~GErveD-~F~vt~~~~~~l~-~~~~q~l 853 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALD--RPGLLAALAGVFADL-GLSLHSAKITTFGERVED-VFIVTDADGQALN-AELRQSL 853 (867)
T ss_pred CceeeccccCCCceEEEEEeCC--cccHHHHHHHHHHhc-ccceeeeeecccccccee-EEEEeccccccCC-HHHHHHH
Confidence 556553 34556789999999 999999999999999 999999999999999987 4555555556564 4566666
Q ss_pred HHHHH
Q 026436 231 QPALR 235 (238)
Q Consensus 231 ~~al~ 235 (238)
.++|.
T Consensus 854 ~~~ll 858 (867)
T COG2844 854 LQRLL 858 (867)
T ss_pred HHHHH
Confidence 66654
No 39
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.64 E-value=0.021 Score=57.57 Aligned_cols=71 Identities=20% Similarity=0.153 Sum_probs=56.8
Q ss_pred CCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 161 DRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 161 ~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
.+.+.|.|+|.+ ++|+|.+|..+|..+ |++|+.|.+.+.++.+++ +|.+.-..+.....+.|.+.|..+|.
T Consensus 597 ~~~~~V~V~~~D--rpGLfa~i~~vL~~~-glnI~dA~i~t~dg~~ld-~F~V~~~~~~~~~~~~l~~~L~~~L~ 667 (774)
T PRK03381 597 PHMVEVTVVAPD--RRGLLSKAAGVLALH-RLRVRSASVRSHDGVAVL-EFVVSPRFGSPPDAALLRQDLRRALD 667 (774)
T ss_pred CCeEEEEEEecC--CccHHHHHHHHHHHC-CCeEEEeEEEecCCEEEE-EEEEECCCCCcchHHHHHHHHHHHHc
Confidence 466789999999 999999999999999 999999999997777776 55555444444455677777777764
No 40
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.59 E-value=0.042 Score=38.96 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=49.4
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPA 233 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~a 233 (238)
+.|.+.|++ ++|+...|-+.|.+. |.+|+.++....++.++ +.+.+..+. .+.++|.+.+...
T Consensus 2 ~iltv~g~D--r~GiVa~vs~~la~~-g~nI~d~~q~~~~~~F~-m~~~~~~~~---~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTD--RPGILNELTRAVSES-GCNILDSRMAILGTEFA-LTMLVEGSW---DAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCC--CChHHHHHHHHHHHc-CCCEEEceeeEEcCEEE-EEEEEEecc---ccHHHHHHHHHHH
Confidence 568899999 999999999999999 99999999888777664 445555542 3566777666553
No 41
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.44 E-value=0.025 Score=39.16 Aligned_cols=61 Identities=11% Similarity=0.215 Sum_probs=44.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
|+|.+.. ++|+|.+|+.+|.+. |.+|.+.++.........+.|.+++.+... .+++.++|+
T Consensus 2 l~v~~~d--~~g~L~~i~~~i~~~-~~nI~~v~~~~~~~~~~~~~~~vev~~~~~--l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPN--RPGMLGRVTTAIGEA-GGDIGAIDLVEQGRDYTVRDITVDAPSEEH--AETIVAAVR 62 (74)
T ss_pred EEEEeCC--CCchHHHHHHHHHHc-CCcEEEEEEEEecCCEEEEEEEEEcCCHHH--HHHHHHHHh
Confidence 5677888 999999999999999 999999988776545544566676655332 334555443
No 42
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.32 E-value=0.043 Score=56.37 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=56.0
Q ss_pred CCeeeEEe--eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE-ecCeEEEEEEEEEecCCcccC----HH
Q 026436 152 LPEIEVRV--SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP-FGNSTVDITVVAQMDVESDVT----VK 224 (238)
Q Consensus 152 ~~~V~V~~--~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~-~~~~~l~~~i~~q~~~~~~~~----~~ 224 (238)
.+.|.++. ..+...|.|.|.. ++|+|.+|..+|..+ |++|+.|.|.+ .++++++ +|.++...+.... .+
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~~D--r~GLfa~i~~~L~~~-glnI~~A~I~t~~dg~alD-~F~V~~~~g~~~~~~~~~~ 794 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLAAD--HPGLFSRIAGACAAA-GANIVDARIFTTTDGRALD-TFWIQDAFGRDEDEPRRLA 794 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEeCC--CCcHHHHHHHHHHHC-CCcEEEEEEEEecCCeEEE-EEEEECCCCCCCCCHHHHH
Confidence 34555543 3357889999999 999999999999999 99999999877 4666776 5556544443333 33
Q ss_pred HHHHHHHHHH
Q 026436 225 DLVKNLQPAL 234 (238)
Q Consensus 225 dL~~~L~~al 234 (238)
.|.+.|..++
T Consensus 795 ~l~~~L~~~l 804 (931)
T PRK05092 795 RLAKAIEDAL 804 (931)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 43
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.28 E-value=0.034 Score=40.30 Aligned_cols=67 Identities=10% Similarity=0.257 Sum_probs=50.9
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
+.|.+.|++ ++|++..|.+.|-.+ |++|+..+..+.++.++ +.+.+.... ...+.++|...|.....
T Consensus 2 ~vl~i~g~D--~pGiva~vt~~la~~-g~nI~~~~~~~~~~~f~-~~~~v~~~~-~~~~~~~L~~~l~~l~~ 68 (88)
T cd04872 2 AVITVVGKD--RVGIVAGVSTKLAEL-NVNILDISQTIMDGYFT-MIMIVDISE-SNLDFAELQEELEELGK 68 (88)
T ss_pred EEEEEEcCC--CCCHHHHHHHHHHHc-CCCEEechhHhhCCccE-EEEEEEeCC-CCCCHHHHHHHHHHHHH
Confidence 568899999 999999999999999 99999999777666543 455555442 24567777777766543
No 44
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.25 E-value=0.055 Score=37.75 Aligned_cols=66 Identities=11% Similarity=0.246 Sum_probs=47.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe-cCeEEEEEEEEEecCCc-ccCHHHHHHHHHHHHHh
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF-GNSTVDITVVAQMDVES-DVTVKDLVKNLQPALRK 236 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~-~~~~l~~~i~~q~~~~~-~~~~~dL~~~L~~al~~ 236 (238)
|.+.|+. ++|++.+|.+.|-++ |++++..+..+. ++..+ ++.+++.... ..+.++|.+.|......
T Consensus 2 i~v~g~D--~~Giv~~it~~l~~~-g~nI~~~~~~~~~~~~~f--~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 2 LTLSCPD--RPGIVAAVSGFLAEH-GGNIVESDQFVDPDSGRF--FMRVEFELEGFDLSREALEAAFAPVAAE 69 (74)
T ss_pred EEEEcCC--CCCHHHHHHHHHHHc-CCCEEeeeeeecCCCCeE--EEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 6789999 999999999999999 999999987652 33333 3344444333 25677888777765543
No 45
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.13 E-value=0.045 Score=55.77 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=51.3
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE-ecCeEEEEEEEEEecCCcccCH----HHHHHHHHHHH
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP-FGNSTVDITVVAQMDVESDVTV----KDLVKNLQPAL 234 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~-~~~~~l~~~i~~q~~~~~~~~~----~dL~~~L~~al 234 (238)
..+...|-|+|.. ++|+|.+|..+|..+ ||+|+.|.|.+ .++.+++ +|.+.-.++. ... +.|.+.|.++|
T Consensus 675 ~~~~~~v~i~~~d--~~gLFa~i~g~l~~~-~l~I~~A~i~t~~~g~~ld-~f~V~~~~~~-~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 675 AGEGLQVMVYTPD--QPDLFARICGYFDRA-GFSILDARVHTTRHGYALD-TFQVLDPEED-VHYRDIINLVEHELAERL 749 (856)
T ss_pred CCCeEEEEEEecC--CCcHHHHHHHHHHHC-CCceeeeEEEEcCCCeEEE-EEEEeCCCCC-CChHHHHHHHHHHHHHHH
Confidence 3466789999999 999999999999999 99999999854 5677787 5555544444 333 34555555544
No 46
>PRK00194 hypothetical protein; Validated
Probab=96.12 E-value=0.048 Score=39.53 Aligned_cols=67 Identities=10% Similarity=0.209 Sum_probs=49.8
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.+.|.+.|++ ++|++.+|.+.|-++ |++|+..+..+.++.+. +.+.+.... ...+.++|.+.|...-
T Consensus 3 ~~~ltv~g~D--rpGiva~vt~~la~~-g~nI~~~~~~~~~~~~~-~~~~v~~~~-~~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKD--KVGIIAGVSTVLAEL-NVNILDISQTIMDGYFT-MIMLVDISE-SKKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCC--CCCHHHHHHHHHHHc-CCCEEehhhHhhCCeeE-EEEEEEecC-CCCCHHHHHHHHHHHH
Confidence 4678899999 999999999999999 99999998776666443 455555543 1345667776666543
No 47
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.08 E-value=0.078 Score=37.19 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=49.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALRK 236 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~ 236 (238)
|.+...+ ++|+..+|.++|.++ |+++...+.+++++.+ .+.+.+.+.. ..+.++|...|......
T Consensus 2 vtv~G~D--rpGiv~~vt~~la~~-~~nI~dl~~~~~~~~f-~~~~~v~~p~--~~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 2 ITVTGPD--RPGLTSALTEVLAAH-GVRILDVGQAVIHGRL-SLGILVQIPD--SADSEALLKDLLFKAHE 66 (75)
T ss_pred EEEEcCC--CCCHHHHHHHHHHHC-CCCEEecccEEEcCee-EEEEEEEcCC--CCCHHHHHHHHHHHHHH
Confidence 5677888 999999999999999 9999999888887653 3455555544 35677888777766543
No 48
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.06 E-value=0.061 Score=37.57 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=45.3
Q ss_pred EEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCC-cccCHHHHHHHHHH
Q 026436 168 IHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVE-SDVTVKDLVKNLQP 232 (238)
Q Consensus 168 i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~-~~~~~~dL~~~L~~ 232 (238)
+..+. ++|.|.+||+.|.+. |+.+++-......+....|.|.+.+++. .....+++...|+.
T Consensus 4 ~~l~d--~pG~L~~vL~~f~~~-~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 4 FSLKN--KPGALAKALKVFAER-GINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEeCC--cCCHHHHHHHHHHHC-CCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 44556 899999999999999 9999999877766544556666776653 33455666666654
No 49
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.03 E-value=0.11 Score=36.51 Aligned_cols=66 Identities=5% Similarity=0.133 Sum_probs=49.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC-----eEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN-----STVDITVVAQMDVESDVTVKDLVKNLQPALRK 236 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~-----~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~ 236 (238)
|.+.|+. ++|++.+|-+.|.++ |++|...+..+.+. ..+.+.+.+.+.. ..+..+|.+.|...-..
T Consensus 2 l~v~g~D--~~Giv~~it~~l~~~-~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~--~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGND--RPGIVHEVTQFLAQR-NINIEDLSTETYSAPMSGTPLFKAQATLALPA--GTDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCC--CCCHHHHHHHHHHHc-CCCeEEeEeeeecCCCCCcceEEEEEEEecCC--CCCHHHHHHHHHHHHHH
Confidence 6789999 999999999999999 99999999888761 2333445555543 45677888777765443
No 50
>PRK04435 hypothetical protein; Provisional
Probab=95.78 E-value=0.078 Score=42.54 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=50.9
Q ss_pred eeCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 159 VSDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 159 ~~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
..|..+.|.+.+.. ++|+|.+|++.|.+. |++|...+.....+...+++|.+.+.+. ...+++|...|++
T Consensus 65 ~~~r~vtL~i~l~D--r~GlLs~Il~~IA~~-~aNIltI~q~i~~~g~a~vs~tVevs~~-~~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLED--RSGTLSKVLNVIAEA-GGNILTINQSIPLQGRANVTISIDTSSM-EGDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEec--CCCHHHHHHHHHHHc-CCCeEEEEEEcCCCCEEEEEEEEEeCCh-HHHHHHHHHHHHc
Confidence 56788999999999 999999999999999 9999988754433334445666665432 1245566666653
No 51
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.78 E-value=0.067 Score=54.81 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=51.3
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe-cCeEEEEEEEEEecCCcccC-----HHHHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF-GNSTVDITVVAQMDVESDVT-----VKDLVKNLQPAL 234 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~-~~~~l~~~i~~q~~~~~~~~-----~~dL~~~L~~al 234 (238)
+...|.|.|.. ++|+|.+|..+|..+ ||+|+.|.|.+. ++.+++ +|.+.-.++..+. .+.|.+.|.++|
T Consensus 703 ~~t~V~V~~~D--rpgLFa~i~g~L~~~-~lnI~~A~I~Tt~dg~alD-~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 703 GGTQIFIYAPD--QHDFFAATVAAMDQL-NLNIHDARIITSSSQFTLD-TYIVLDDDGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred CeEEEEEEeCC--CCcHHHHHHHHHHHC-CCeEEEEEEEEcCCCeEEE-EEEEeCCCCCCccchHHHHHHHHHHHHHHH
Confidence 56789999999 999999999999999 999999998554 566787 5555545544432 234555555555
No 52
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.78 E-value=0.0056 Score=48.97 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=47.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcCCCC--CCCChhhHHHHHHHHHHHHHHHH
Q 026436 55 HAQDHVIAERKRREKLNQRFIALSALVPGL--KKTDKASILGDSIKYLKQLQERV 107 (238)
Q Consensus 55 ~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~--~k~~k~~il~~ai~yi~~L~~~~ 107 (238)
++--|++.||+|-..+|+.|..||.++|.. .|.+|.--|.-|..||.+|-+-.
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 577899999999999999999999999975 78899999999999999986543
No 53
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.66 E-value=0.02 Score=53.89 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=47.7
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHH
Q 026436 52 DPSHAQDHVIAERKRREKLNQRFIALSALVPGL----KKTDKASILGDSIKYLKQLQERVKAL 110 (238)
Q Consensus 52 ~~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~----~k~~k~~il~~ai~yi~~L~~~~~~l 110 (238)
...+|..+|+.||-|=..||+.|.+|.-+.-.- +.-.|.-||..|+.-|-.|+++|.+-
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 334678899999999888999999998665322 23458999999999999999998764
No 54
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.59 E-value=0.091 Score=36.01 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=44.7
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.|.|.|+. +.|+-.++...+-+. ||.|....+++.|.-.+-++-++.-.....+.-+-|++.|.+
T Consensus 2 vitvnCPD--ktGLgcdlcr~il~f-Gl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~ 66 (69)
T cd04894 2 VITINCPD--KTGLGCDLCRIILEF-GLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMS 66 (69)
T ss_pred EEEEeCCC--ccCcccHHHHHHHHh-ceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHh
Confidence 47899999 999999999999999 999999999997764432221221112223444455555544
No 55
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.56 E-value=0.068 Score=37.01 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=42.8
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
.|.|.+.. ++|+|.+|+..|.+. |.+|...+.....+...++.|.+.+.+.. ...++|..+|+
T Consensus 2 ~l~i~~~d--~~g~l~~I~~~la~~-~inI~~i~~~~~~~~~~~i~~~v~v~~~~-~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEH--RPGVLSKVLNTIAQV-RGNVLTINQNIPIHGRANVTISIDTSTMN-GDIDELLEELR 64 (76)
T ss_pred EEEEEecC--CCchHHHHHHHHHHc-CCCEEEEEeCCCCCCeEEEEEEEEcCchH-HHHHHHHHHHh
Confidence 46778888 999999999999999 99999987654333344455666554422 23445555554
No 56
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.54 E-value=0.13 Score=37.86 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=47.6
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
..|-+..+. ++|.|.++|..|... |+.+.+-......+....|.|.+.++....-.+..+...|.+
T Consensus 15 tslif~l~~--~pGsL~~vL~~Fa~~-~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 15 ISLIFSLKE--EVGALAKVLRLFEEK-DINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred EEEEEEcCC--CCcHHHHHHHHHHHC-CCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 445566666 899999999999999 999999988887766666777777765422333445555544
No 57
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.33 E-value=0.22 Score=35.26 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=43.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCC-cccCHHHHHHHHHH
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVE-SDVTVKDLVKNLQP 232 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~-~~~~~~dL~~~L~~ 232 (238)
|.+..+. ++|.|.+|++.|.++ |+.+++.......+....|.|.+..+.. ..-...++...|+.
T Consensus 4 l~~~~~d--~~G~L~~il~~f~~~-~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 4 IVFTLPN--KPGALYDVLGVFAER-GINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred EEEEECC--CCCHHHHHHHHHHHC-CcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4455566 899999999999999 9999998776665544456677776653 12233344444443
No 58
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.20 E-value=0.2 Score=33.70 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=41.3
Q ss_pred EEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec----CeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 167 RIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG----NSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 167 ~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~----~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.|.++. ++|.|.+|+++|.+. |++|.+....... .....+.+.+.+.+ .-..+++.+.|+.
T Consensus 2 ~v~~~d--~~G~L~~i~~~i~~~-~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~l~~ 66 (73)
T cd04886 2 RVELPD--RPGQLAKLLAVIAEA-GANIIEVSHDRAFKTLPLGEVEVELTLETRG--AEHIEEIIAALRE 66 (73)
T ss_pred EEEeCC--CCChHHHHHHHHHHc-CCCEEEEEEEeccCCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 467777 999999999999999 9999988765542 23333455555533 2234566666654
No 59
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.93 E-value=0.17 Score=51.71 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=51.1
Q ss_pred CCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe-cCeEEEEEEEEEecCCcc-cCHHHHHHHHHHHH
Q 026436 161 DRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF-GNSTVDITVVAQMDVESD-VTVKDLVKNLQPAL 234 (238)
Q Consensus 161 ~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~-~~~~l~~~i~~q~~~~~~-~~~~dL~~~L~~al 234 (238)
.+...|-|.|.. ++|+|.+|..+|..+ ||+|+.|.|.+. ++.+++ +|.+.-..+.. -....|.+.|.++|
T Consensus 688 ~~~~~v~v~~~d--~~gLFa~i~g~l~~~-~lnI~~A~i~t~~~g~~ld-~f~V~~~~~~~~~~~~~i~~~l~~~l 759 (869)
T PRK04374 688 NDALEVFVYSPD--RDGLFAAIVATLDRK-GYGIHRARVLDAPHDAIFD-VFEVLPQDTYADGDPQRLAAALRQVL 759 (869)
T ss_pred CCeEEEEEEeCC--CccHHHHHHHHHHHC-CCeEEEEEEEEcCCCEEEE-EEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 456788999999 999999999999999 999999998774 566787 55555444432 12334555555555
No 60
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.75 E-value=0.13 Score=35.24 Aligned_cols=63 Identities=14% Similarity=0.234 Sum_probs=42.0
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC-eEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN-STVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~-~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
++|.|.+.. ++|.|.+|+..|.+. +..+.+.......+ ....+.+.....+ .-.++++...|+
T Consensus 1 ~yl~i~~~d--~~g~l~~i~~~l~~~-~i~I~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~i~~L~ 64 (79)
T cd04881 1 YYLRLTVKD--KPGVLAKITGILAEH-GISIESVIQKEADGGETAPVVIVTHETS--EAALNAALAEIE 64 (79)
T ss_pred CEEEEEeCC--CCcHHHHHHHHHHHc-CCCeEEEEEcccCCCCceeEEEEEccCC--HHHHHHHHHHHH
Confidence 368888888 999999999999999 99999887655432 3333344444332 223344555554
No 61
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=94.67 E-value=0.19 Score=35.28 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=39.2
Q ss_pred EEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecC
Q 026436 167 RIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDV 217 (238)
Q Consensus 167 ~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~ 217 (238)
-+..+. ++|.|.++|+.+... |+.+.+-...+..+....|.|.+.+++
T Consensus 4 ~f~l~~--~pG~L~~vL~~f~~~-~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 4 IFSLKE--EVGALARALKLFEEF-GVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEeCC--CCcHHHHHHHHHHHC-CCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 344556 899999999999999 999999988887776667777777765
No 62
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.56 E-value=0.26 Score=34.00 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=41.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe--cCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF--GNSTVDITVVAQMDVESDVTVKDLVKNLQPA 233 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~--~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~a 233 (238)
+.+..+. ++|.|.++++.|.+. |++|++...... +.....+.+.+.++... ..++|.+.|..+
T Consensus 2 l~v~~~d--~pG~L~~l~~~i~~~-g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~--~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLED--KPGTLKPVVDTLREF-NARIISILTAFEDAPDGMRRVFIRVTPMDRS--KENELIEELKAK 66 (72)
T ss_pred EEEEecC--CCccHHHHHHHHHHC-CCeEEEEEeccccCCCCccEEEEEEEEecch--HHHHHHHHHhCc
Confidence 3455566 999999999999999 999998876654 23333345555542221 255666666543
No 63
>PRK08577 hypothetical protein; Provisional
Probab=94.32 E-value=0.61 Score=36.66 Aligned_cols=66 Identities=15% Similarity=0.296 Sum_probs=48.6
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec-CeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG-NSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~-~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
..+.|.|.+.. ++|+|.+|++.|.++ +.++.+.+..+.. +....+.+.+.+.+.. ..++++.+.|+
T Consensus 55 ~~~~I~V~~~D--r~GvLa~I~~~l~~~-~inI~~i~~~~~~~~~~~~i~l~vev~~~~-~~l~~l~~~L~ 121 (136)
T PRK08577 55 KLVEIELVVED--RPGVLAKITGLLAEH-GVDILATECEELKRGELAECVIIVDLSKSD-IDLEELEEELK 121 (136)
T ss_pred cEEEEEEEEcC--CCCHHHHHHHHHHHC-CCCEEEEEEEEecCCCEEEEEEEEEeCCch-hhHHHHHHHHH
Confidence 36788999999 999999999999999 9999988876654 4444455666666531 23456666654
No 64
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.04 E-value=0.22 Score=34.72 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=31.5
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF 202 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~ 202 (238)
.|+|.+.. ++|+|.+|+.++.+. +..+.+.++.+-
T Consensus 2 ~l~I~~~d--r~Gll~dI~~~i~~~-~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCED--RLGITQEVLDLLVEH-NIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEc--cchHHHHHHHHHHHC-CCceEEEEEecC
Confidence 57888999 999999999999999 999999997664
No 65
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.03 E-value=0.36 Score=34.08 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=38.5
Q ss_pred EEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCc
Q 026436 168 IHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVES 219 (238)
Q Consensus 168 i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~ 219 (238)
+..+. ++|.|.++|..++.. |+.+.+-...+..+....|.|.+.+++..
T Consensus 5 ~~l~~--~~g~L~~iL~~f~~~-~inl~~IeSRP~~~~~~~y~F~id~e~~~ 53 (74)
T cd04929 5 FSLKN--EVGGLAKALKLFQEL-GINVVHIESRKSKRRSSEFEIFVDCECDQ 53 (74)
T ss_pred EEcCC--CCcHHHHHHHHHHHC-CCCEEEEEeccCCCCCceEEEEEEEEcCH
Confidence 33455 799999999999999 99999998887766656677777766543
No 66
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=93.82 E-value=0.46 Score=31.71 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=41.3
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe-cCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF-GNSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~-~~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
+|.+.... ++|.|.+|+..|.+. ++.+.+.+.... ++....+.+.....+ -..+++...|+
T Consensus 2 ~l~i~~~d--~~g~l~~i~~~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVEN--EPGVLNRISGLFARR-GFNIESLTVGPTEDPGISRITIVVEGDD---DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcC--CCcHHHHHHHHHHhC-CCCEEEEEeeecCCCCeEEEEEEEECCH---HHHHHHHHHHh
Confidence 35667777 899999999999999 999999887664 344434455555422 33445555544
No 67
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.58 E-value=0.56 Score=28.61 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=28.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF 202 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~ 202 (238)
|.+.|.. .+|.+.+|+..|... ++.+........
T Consensus 1 i~i~~~~--~~~~l~~i~~~l~~~-~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPD--RPGLLAKVLSVLAEA-GINITSIEQRTS 34 (60)
T ss_pred CEEEecC--CCchHHHHHHHHHHC-CCcEEEEEeEEc
Confidence 3567777 899999999999999 999999886554
No 68
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=93.57 E-value=0.16 Score=44.57 Aligned_cols=53 Identities=26% Similarity=0.289 Sum_probs=45.7
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHH
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSALVPGL---KKTDKASILGDSIKYLKQLQE 105 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~---~k~~k~~il~~ai~yi~~L~~ 105 (238)
...+..=|..||+|-..+|+-|..||.++|.. .|+.|...|.-|-+||..|++
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 44566678899999999999999999999953 788999999999999997764
No 69
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.48 E-value=0.78 Score=29.58 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=35.2
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEec
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMD 216 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~ 216 (238)
|++.+.. ++|.+.+|++.|.+. ++++....+...++....+.+.....
T Consensus 1 l~v~~~~--~~~~l~~i~~~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
T cd04876 1 IRVEAID--RPGLLADITTVIAEE-KINILSVNTRTDDDGLATIRLTLEVR 48 (71)
T ss_pred CEEEEec--cCcHHHHHHHHHHhC-CCCEEEEEeEECCCCEEEEEEEEEEC
Confidence 3567777 899999999999999 99999988766553333334555443
No 70
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.41 E-value=0.85 Score=30.47 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=39.7
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
.|.+.+.. ++|.|.+++..|.+. ++.|.+.......+....+. ..+.+. -..+++.+.|+
T Consensus 2 ~l~i~~~d--~~g~l~~i~~~l~~~-~~~i~~~~~~~~~~~~~~~~--i~~~~~--~~~~~~~~~L~ 61 (72)
T cd04874 2 ALSIIAED--KPGVLRDLTGVIAEH-GGNITYTQQFIEREGKARIY--MELEGV--GDIEELVEELR 61 (72)
T ss_pred eEEEEeCC--CCChHHHHHHHHHhC-CCCEEEEEEeccCCCeEEEE--EEEecc--ccHHHHHHHHh
Confidence 35677777 999999999999999 99999887665433333233 333332 23445555544
No 71
>PRK07334 threonine dehydratase; Provisional
Probab=92.42 E-value=0.7 Score=42.97 Aligned_cols=65 Identities=11% Similarity=0.236 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe----cCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF----GNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~----~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.+.|+|.+.. ++|+|.+|+..|.+. ++.|.+.++.+. .+....+.|.+++.+-. .+++|..+|++
T Consensus 326 ~v~l~I~~~d--r~GlL~dI~~~is~~-~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~--~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRD--RPGALARVTALIGEA-GANIIEVSHQRLFTDLPAKGAELELVIETRDAA--HLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCC--CCCHHHHHHHHHhhC-CCceEEEEEEecccCCCCCeEEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 4889999999 999999999999999 999999987654 34444456666665532 34466666654
No 72
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.17 E-value=0.65 Score=35.72 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=39.9
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCC
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVE 218 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~ 218 (238)
..|-+..+. ++|.|.++|..|... |+.+.+-..-+..+....|.|.+.+++.
T Consensus 42 tSlifsl~~--~pGsL~~iL~~Fa~~-gINLt~IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 42 ATLLFSLKE--GFSSLSRILKVFETF-EAKIHHLESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred EEEEEEeCC--CCcHHHHHHHHHHHC-CCCEEEEECCcCCCCCceEEEEEEEEeC
Confidence 344455566 899999999999999 9999998887776665566666666554
No 73
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.94 Score=45.60 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=57.1
Q ss_pred CCeeeEEeeCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE-ecCeEEEEEEEEEecCCcccCH---HHHH
Q 026436 152 LPEIEVRVSDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP-FGNSTVDITVVAQMDVESDVTV---KDLV 227 (238)
Q Consensus 152 ~~~V~V~~~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~-~~~~~l~~~i~~q~~~~~~~~~---~dL~ 227 (238)
...+.++...+...|-|.|+. ++.+|..|..++... |++|+.|.|.+ -+|+.++ ||.+...++..+.. ..+.
T Consensus 673 Lv~~~~r~~~~~teV~V~a~d--~p~Lfa~v~~~~~~~-g~~i~dAqi~tt~dG~alD-tfiv~~~~g~~~~~dr~~~~~ 748 (867)
T COG2844 673 LVLISVRPHSGGTEVFVYAPD--RPRLFAVVCAALSRR-GLSIVDAQIFTTRDGYALD-TFIVLEPDGFPVEEDRRAALR 748 (867)
T ss_pred ceeeeecccCCceEEEEEcCC--CccHHHHHHHHHccC-CCceeeeEEEEccCCceee-eEEEecCCCCccchhHHHHHH
Confidence 344456666778899999999 999999999999999 99999999755 4566898 55555555554541 1344
Q ss_pred HHHHHHH
Q 026436 228 KNLQPAL 234 (238)
Q Consensus 228 ~~L~~al 234 (238)
+.|.+++
T Consensus 749 ~~l~~~l 755 (867)
T COG2844 749 GELIEAL 755 (867)
T ss_pred HHHHHHH
Confidence 4444444
No 74
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=91.63 E-value=2 Score=38.28 Aligned_cols=70 Identities=10% Similarity=0.178 Sum_probs=50.7
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE-ecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP-FGNSTVDITVVAQMDVESDVTVKDLVKNLQPALRKF 237 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~-~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~~ 237 (238)
.+.|.+.|.+ ++|+...|-+.|-++ |++|...+..+ .++..|. ..+++......+.++|.+.|...-..+
T Consensus 7 ~~vitv~G~D--rpGIVa~VT~~La~~-~vNI~dls~~~~~~~~~F~--m~~~~~~p~~~~~~~L~~~L~~l~~~l 77 (286)
T PRK13011 7 TFVLTLSCPS--AAGIVAAVTGFLAEH-GCYITELHSFDDRLSGRFF--MRVEFHSEEGLDEDALRAGFAPIAARF 77 (286)
T ss_pred eEEEEEEeCC--CCCHHHHHHHHHHhC-CCCEEEeeeeecCCCCeEE--EEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 4678899999 999999999999999 99999998753 2344443 344443333466778887777665443
No 75
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=91.38 E-value=1.4 Score=34.83 Aligned_cols=67 Identities=18% Similarity=0.415 Sum_probs=48.3
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEE-EEEecCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCN-VLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~-is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
.+..+.+.+..+. |-|.|+++|+++-.. ++.|++.+ ..+.+++. ++++..... +-...+++|+.+|+
T Consensus 69 k~ri~TL~l~led--r~G~LS~vLd~iA~~-~~nvLTI~Q~ipl~g~A-nvtlsi~~s-sm~~~V~~ii~kl~ 136 (150)
T COG4492 69 KERIITLSLSLED--RVGILSDVLDVIARE-EINVLTIHQTIPLQGRA-NVTLSIDTS-SMEKDVDKIIEKLR 136 (150)
T ss_pred cceEEEEEEEEhh--hhhhHHHHHHHHHHh-CCcEEEEecccccCcee-eEEEEEEch-hhhhhHHHHHHHHh
Confidence 4556788888999 999999999999999 99999886 45566664 345544433 23345667766665
No 76
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.04 E-value=1.6 Score=38.95 Aligned_cols=68 Identities=10% Similarity=0.178 Sum_probs=47.6
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEE--Eec-CeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVL--PFG-NSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is--~~~-~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
.+.|.+.|++ ++|+...|-+.|-+. |++|+..+-. +.. .+++- +..........+.++|.+.|...-.
T Consensus 9 ~~iitv~G~D--r~GIVA~Vs~~Lae~-g~NI~disq~~d~~~~~ffm~--i~~~~~~~~~~~~~~l~~~l~~l~~ 79 (289)
T PRK13010 9 SYVLTLACPS--APGIVAAVSGFLAEK-GCYIVELTQFDDDESGRFFMR--VSFHAQSAEAASVDTFRQEFQPVAE 79 (289)
T ss_pred CEEEEEECCC--CCCcHHHHHHHHHHC-CCCEEecccccccccCcEEEE--EEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 4678999999 999999999999999 9999999864 333 33332 2222222234677777777766443
No 77
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=91.00 E-value=0.26 Score=47.21 Aligned_cols=41 Identities=34% Similarity=0.523 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHH
Q 026436 61 IAERKRREKLNQRFIALSALVPGL----KKTDKASILGDSIKYLK 101 (238)
Q Consensus 61 ~~Er~RR~~i~~~~~~L~~lvP~~----~k~~k~~il~~ai~yi~ 101 (238)
---+|-|+++|.-+..|.+|+|.. +|.||.+||.-++.|++
T Consensus 31 NPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 31 NPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred CcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 334667999999999999999964 89999999999999986
No 78
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=90.80 E-value=0.29 Score=45.40 Aligned_cols=42 Identities=45% Similarity=0.546 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHH
Q 026436 61 IAERKRREKLNQRFIALSALVPGL----KKTDKASILGDSIKYLKQ 102 (238)
Q Consensus 61 ~~Er~RR~~i~~~~~~L~~lvP~~----~k~~k~~il~~ai~yi~~ 102 (238)
-+-|.||++-|.-|.+|..++|-. ...||++|+.-|..|||-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 456899999999999999999964 669999999999999983
No 79
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.67 E-value=2.2 Score=28.77 Aligned_cols=35 Identities=11% Similarity=0.268 Sum_probs=29.3
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF 202 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~ 202 (238)
.+.+.++. ++|.|.++++.|.++ |++|........
T Consensus 3 ~~~v~~~d--~~G~L~~l~~~l~~~-~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPD--EPGVIAEVTQILGDA-GISIKNIEILEI 37 (69)
T ss_pred EEEEEcCC--CCCHHHHHHHHHHHc-CCCceeeEeEEe
Confidence 45677777 999999999999999 999998765554
No 80
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=90.55 E-value=2.2 Score=28.10 Aligned_cols=59 Identities=8% Similarity=0.133 Sum_probs=40.2
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec-CeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG-NSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~-~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
+.|.... ++|.+.+|++.|.+. |+.|.+..+.... +....+++.+ ++ . ..+++.+.|+.
T Consensus 2 l~v~~~d--~~g~l~~i~~~l~~~-~~nI~~~~~~~~~~~~~~~~~~~v--~~-~--~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKD--VPGVIGKVGTILGEH-GINIAAMQVGRKEKGGIAYMVLDV--DS-P--VPEEVLEELKA 61 (71)
T ss_pred EEEEecC--CCCHHHHHHHHHHhc-CCCeeeEEEeccCCCCEEEEEEEc--CC-C--CCHHHHHHHHc
Confidence 4566777 899999999999999 9999998876654 2333234444 33 1 34566666653
No 81
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=90.35 E-value=2.5 Score=37.57 Aligned_cols=69 Identities=9% Similarity=0.105 Sum_probs=50.9
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE--ecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP--FGNSTVDITVVAQMDVESDVTVKDLVKNLQPALRK 236 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~--~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~ 236 (238)
.+.|.+.|.+ ++|+...|-++|-++ |++|...+.++ .++. |...+.+.++ ....+.++|...|...-..
T Consensus 6 ~~vitv~G~D--rpGIVa~Vt~~La~~-g~NI~d~s~~~~~~~g~-F~m~i~v~~~-~~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK06027 6 RYVLTLSCPD--RPGIVAAVSNFLYEH-GGNIVDADQFVDPETGR-FFMRVEFEGD-GLIFNLETLRADFAALAEE 76 (286)
T ss_pred eEEEEEECCC--CCcHHHHHHHHHHHC-CCCEEEceeEEcCCCCe-EEEEEEEEeC-CCCCCHHHHHHHHHHHHHH
Confidence 5678899999 999999999999999 99999999888 6664 3344445442 2234566777777655443
No 82
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.31 E-value=1.6 Score=28.74 Aligned_cols=56 Identities=11% Similarity=0.189 Sum_probs=37.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec--CeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG--NSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~--~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
|.+..+. ++|.|.+++..|.+. |+.|.+....... +.. .+...++. .+++.+.|++
T Consensus 2 i~v~~~d--~pG~L~~i~~~l~~~-~~nI~~i~~~~~~~~~~~---~v~~~ve~-----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPD--KPGGLHEILQILSEE-GINIEYMYAFVEKKGGKA---LLIFRTED-----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCC--CCcHHHHHHHHHHHC-CCChhheEEEccCCCCeE---EEEEEeCC-----HHHHHHHHHH
Confidence 4556666 999999999999999 9999877654433 222 23444443 5566666554
No 83
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.30 E-value=2.4 Score=28.03 Aligned_cols=59 Identities=8% Similarity=0.191 Sum_probs=39.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe-cCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF-GNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~-~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
|.+.+.. ++|.|.+|+..|.++ |+.+.+...... ++....+. ..+.+. ...++.+.|+.
T Consensus 2 l~i~~~d--~~g~l~~i~~~l~~~-~~~I~~~~~~~~~~~~~~~i~--i~v~~~---~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKD--KPGAIAKVTSVLADH-EINIAFMRVSRKEKGDQALMV--IEVDQP---IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCC--CCChHHHHHHHHHHc-CcCeeeeEEEeccCCCeEEEE--EEeCCC---CCHHHHHHHHc
Confidence 5567777 999999999999999 999988876552 22222222 344342 44466666553
No 84
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=90.22 E-value=3.2 Score=27.94 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=33.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEe
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQM 215 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~ 215 (238)
|.|..+. ++|.|.+|++.|.+. |+.|.+..+...++. ..+....
T Consensus 4 i~v~v~d--~pG~La~v~~~l~~~-~inI~~i~~~~~~~~---~~~rl~~ 47 (66)
T cd04908 4 LSVFLEN--KPGRLAAVTEILSEA-GINIRALSIADTSEF---GILRLIV 47 (66)
T ss_pred EEEEEcC--CCChHHHHHHHHHHC-CCCEEEEEEEecCCC---CEEEEEE
Confidence 4566667 999999999999999 999998876665553 2344444
No 85
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=89.82 E-value=0.55 Score=40.79 Aligned_cols=52 Identities=29% Similarity=0.259 Sum_probs=44.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 026436 56 AQDHVIAERKRREKLNQRFIALSALVPGL---KKTDKASILGDSIKYLKQLQERV 107 (238)
Q Consensus 56 ~~~h~~~Er~RR~~i~~~~~~L~~lvP~~---~k~~k~~il~~ai~yi~~L~~~~ 107 (238)
+..-+..||+|-..+|..|..||..||.. .|.+|-.-|.-|-.||--|-...
T Consensus 175 r~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 175 RLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 44568899999999999999999999976 67788889999999998776544
No 86
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=88.78 E-value=4.5 Score=35.93 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=47.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe--cCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF--GNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~--~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.|.+.|++ ++|+...|-..|-+. |++|+..+-+.. ++.++ ..+.+...+ ...+.++|.+.+..
T Consensus 2 ~itv~g~D--~~GIVA~Vt~~La~~-g~NI~d~sq~~~~~~~~F~-mr~~v~~~~-~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPD--QKGLVAAISTFIAKH-GANIISNDQHTDPETGRFF-MRVEFQLEG-FRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCC--CCChHHHHHHHHHHC-CCCEEeeeEEEcCCCCeEE-EEEEEEeCC-CCCCHHHHHHHHHH
Confidence 47899999 999999999999999 999999986653 24433 334444432 24677888887776
No 87
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=87.99 E-value=0.48 Score=46.58 Aligned_cols=46 Identities=39% Similarity=0.511 Sum_probs=39.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHH
Q 026436 56 AQDHVIAERKRREKLNQRFIALSALVPGL----KKTDKASILGDSIKYLK 101 (238)
Q Consensus 56 ~~~h~~~Er~RR~~i~~~~~~L~~lvP~~----~k~~k~~il~~ai~yi~ 101 (238)
+..-.-+-|-||.|-|+-|.+|..+||-. ...||++|+.-||-|++
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 34445677999999999999999999943 67899999999999997
No 88
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=86.87 E-value=4.9 Score=40.33 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=43.9
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCC
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVE 218 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~ 218 (238)
.+.|.|.+.+ ++|+|.+|..+|-+. ++.|.+.++.+..+.+..+.|.+++.+-
T Consensus 626 ~v~i~I~~~d--r~GlL~dI~~~i~~~-~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 678 (702)
T PRK11092 626 IAEIKVEMFN--HQGALANLTAAINTT-GSNIQSLNTEEKDGRVYSAFIRLTARDR 678 (702)
T ss_pred EEEEEEEEeC--CCCHHHHHHHHHHHC-CCCeEEEEEEEcCCCEEEEEEEEEECCH
Confidence 4577888888 999999999999999 9999999987765556556777887763
No 89
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=86.27 E-value=6.7 Score=32.83 Aligned_cols=69 Identities=6% Similarity=0.148 Sum_probs=48.8
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC---e--EEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN---S--TVDITVVAQMDVESDVTVKDLVKNLQPALRKF 237 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~---~--~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~~ 237 (238)
+.|.+.-.+ +||+..+|-+.|-+. |++|..-+..+.+. . .|...+.+.+.. ....++|...|......|
T Consensus 96 ~~v~v~G~D--rPGIV~~vT~~la~~-~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~--~~~~~~L~~~l~~l~~eL 169 (190)
T PRK11589 96 VWVQVEVAD--SPHLIERFTALFDSH-HMNIAELVSRTQPAEGERPAQLHIQITAHSPA--SQDAANIEQAFKALCTEL 169 (190)
T ss_pred EEEEEEECC--CCCHHHHHHHHHHHc-CCChhheEEeeecCCCCCcccEEEEEEEEcCC--CCCHHHHHHHHHHHHHHh
Confidence 456677777 999999999999999 99999988777652 2 343444444444 455667777776665544
No 90
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.16 E-value=7.9 Score=26.04 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=38.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe--cCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF--GNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~--~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.|.+..+. ++|.|.++++.|.+. |+.+.+...... ++... +.|.+...+ .+++.+.|..
T Consensus 3 ~~~v~~~d--~pG~l~~i~~~l~~~-~inI~~i~~~~~~~~~~~~-v~i~v~~~~-----~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPD--RPGQLADIAAIFKDR-GVNIVSVLVYPSKEEDNKI-LVFRVQTMN-----PRPIIEDLRR 63 (72)
T ss_pred EEEEEECC--CCCHHHHHHHHHHHc-CCCEEEEEEeccCCCCeEE-EEEEEecCC-----HHHHHHHHHH
Confidence 45566777 899999999999999 999987754332 12222 344443322 3366666654
No 91
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=85.77 E-value=3.5 Score=41.58 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=46.8
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec-CeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG-NSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~-~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
.+.|.|.+.. ++|+|.+|..+|.+. ++.|.+.++.+.. +.+..+.|.+++.+-..+ ..|...|+
T Consensus 666 ~v~I~I~~~D--r~GlL~dIt~~is~~-~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L--~~l~~~L~ 730 (743)
T PRK10872 666 SLVVRVTAND--RSGLLRDITTILANE-KVNVLGVASRSDTKQQLATIDMTIEIYNLQVL--GRVLGKLN 730 (743)
T ss_pred EEEEEEEEcC--CCCHHHHHHHHHHHC-CCCeEEEEeEEcCCCCEEEEEEEEEECCHHHH--HHHHHHHh
Confidence 3577888888 999999999999999 9999999987653 445556677777664332 34444443
No 92
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=85.73 E-value=6 Score=39.56 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=44.3
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCc
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVES 219 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~ 219 (238)
.+.|.|.+.+ ++|+|.+|+.+|-+. +..|.+.++....+.+..+.|.+++.+-.
T Consensus 610 ~v~I~I~~~d--r~GlLadI~~~ia~~-~~nI~~v~~~~~~~~~~~~~~~ieV~~~~ 663 (683)
T TIGR00691 610 IVDINIEAVD--RKGVLSDLTTAISEN-DSNIVSISTKTYGKREAILNITVEIKNYK 663 (683)
T ss_pred EEEEEEEEec--CCCHHHHHHHHHHHC-CCCeEEEEeEEcCCCEEEEEEEEEECCHH
Confidence 4577888888 999999999999999 99999999877655555567778877643
No 93
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=85.56 E-value=6.3 Score=32.01 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=43.3
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec-CeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG-NSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~-~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
.|.|..+. ++|.|.+|...|... |+.+.+..+.... .....++|++.- ..-.++.|.+.|.
T Consensus 3 ~isI~ven--~pGvL~rI~~lf~rr-g~NI~Sl~v~~t~~~~~sriti~V~~---d~~~i~qi~kQl~ 64 (157)
T TIGR00119 3 ILSVLVEN--EPGVLSRVAGLFTRR-GFNIESLTVGPTEDPDLSRMTIVVVG---DDKVLEQITKQLN 64 (157)
T ss_pred EEEEEEcC--CCcHHHHHHHHHHhC-CceEEEEEEeecCCCCEEEEEEEEEC---CHHHHHHHHHHHh
Confidence 46667777 999999999999999 9999999877765 345556666653 1234444554443
No 94
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=84.84 E-value=7 Score=31.87 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=42.5
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec-CeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG-NSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~-~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
.|.+..+. ++|.|.+|...|... |+.+.+..+.... .....++|++.-+ .-.++.+.+.|.
T Consensus 4 ~IsV~veN--~pGvL~rI~~lf~rr-g~NI~Sl~v~~te~~~~sriti~V~~~---~~~i~qi~kQl~ 65 (161)
T PRK11895 4 TLSVLVEN--EPGVLSRVAGLFSRR-GYNIESLTVGPTEDPGLSRMTIVTSGD---EQVIEQITKQLN 65 (161)
T ss_pred EEEEEEcC--CCcHHHHHHHHHHhC-CCcEEEEEeeecCCCCEEEEEEEEECC---HHHHHHHHHHHh
Confidence 45666677 999999999999999 9999998877665 3454566666532 233444544443
No 95
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=83.96 E-value=8.4 Score=41.91 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=57.5
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec----CeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG----NSTVDITVVAQMDVESDVTVKDLVKNLQPALRKF 237 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~----~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~~ 237 (238)
+.+.++|-... .+..|++||-.|+++ ||.|+...-..+. ..++-+.|.++...+......++...+..+|...
T Consensus 488 ~~~~lkiy~~~--~~~~Ls~vlPilenl-Gl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 488 GRLRLKIYHPG--EPLPLSDVLPILENL-GLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CeEEEEEEcCC--CCcCHHHHHHHHHhC-CCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHH
Confidence 46888888777 789999999999999 9999998743332 3344456888888887788889999998888643
No 96
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=82.59 E-value=4.3 Score=33.95 Aligned_cols=64 Identities=8% Similarity=0.090 Sum_probs=47.0
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
..+.|.+...+ |+|+...|-++|.++ |.+++.++.+.+++.+- ..+.+.... ....+|...|..
T Consensus 7 ~~lviTviG~D--rpGIVa~vs~~l~~~-g~NI~ds~~t~lgg~Fa-~i~lvs~~~---~~~~~le~~L~~ 70 (190)
T PRK11589 7 HYLVITALGAD--RPGIVNTITRHVSSC-GCNIEDSRLAMLGEEFT-FIMLLSGSW---NAITLIESTLPL 70 (190)
T ss_pred cEEEEEEEcCC--CChHHHHHHHHHHHc-CCCeeehhhHhhCCceE-EEEEEeCCh---hHHHHHHHHHHh
Confidence 45678888888 999999999999999 99999999999988652 233343222 255555555543
No 97
>PRK08198 threonine dehydratase; Provisional
Probab=82.35 E-value=10 Score=35.14 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=48.1
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec----CeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG----NSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~----~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.+..+.+.|..+. +||.|.++++.|-+. |.+|+..+..... .....++|.++..+.. ..++|.+.|++
T Consensus 324 ~gr~~~l~v~l~D--~PG~L~~ll~~i~~~-g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~--~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPD--RPGQLAKLLSIIAEL-GANVIDVDHDRFSPDLRLGEVEVELTLETRGPE--HIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCC--CCCHHHHHHHHHhhC-CCceEEEEEEEccCCCCCceEEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 4556788899999 999999999999999 9999888765432 2234456666653322 45567766654
No 98
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.33 E-value=6.9 Score=26.55 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=35.7
Q ss_pred EEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 167 RIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 167 ~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.+..+. +||-|.++++.|.+ |.+|+..+....+...-.+++.++..+. -..++|.+.|.+
T Consensus 2 ~v~ipd--kPG~l~~~~~~i~~--~~nI~~~~~~~~~~~~~~v~v~ie~~~~--~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPE--RPGALKKFLELLGP--PRNITEFHYRNQGGDEARVLVGIQVPDR--EDLAELKERLEA 61 (68)
T ss_pred EEECCC--CCCHHHHHHHHhCC--CCcEEEEEEEcCCCCceEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 455666 89999999998865 6677766654433222234555565542 234455555543
No 99
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=81.60 E-value=8.4 Score=24.74 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=28.2
Q ss_pred EEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec
Q 026436 167 RIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG 203 (238)
Q Consensus 167 ~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~ 203 (238)
.+.... ++|.|.++++.|.+. |+.|....+...+
T Consensus 2 ~v~~~d--~~G~l~~i~~~l~~~-~inI~~~~~~~~~ 35 (56)
T cd04889 2 SVFVEN--KPGRLAEVTEILAEA-GINIKAISIAETR 35 (56)
T ss_pred EEEeCC--CCChHHHHHHHHHHc-CCCEeeEEEEEcc
Confidence 456666 899999999999999 9999888766554
No 100
>PRK11899 prephenate dehydratase; Provisional
Probab=81.05 E-value=12 Score=33.14 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=43.1
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCC
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVE 218 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~ 218 (238)
..|-+..+. ++|.|.++|.+|... |++...-..-...+..+.|.|.+.+++.
T Consensus 195 tsl~~~~~~--~pGaL~~vL~~Fa~~-gINLtkIeSRP~~~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 195 TTFVFRVRN--IPAALYKALGGFATN-GVNMTKLESYMVGGSFTATQFYADIEGH 246 (279)
T ss_pred EEEEEEeCC--CCChHHHHHHHHHHc-CCCeeeEEeeecCCCCceEEEEEEEECC
Confidence 344445555 899999999999999 9999999988888888888888888774
No 101
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=80.46 E-value=15 Score=24.80 Aligned_cols=53 Identities=28% Similarity=0.303 Sum_probs=34.9
Q ss_pred CCCcHHHHHHHHHHhcCCeeEEEEEEEEec-CeEEEEEEEEEecCCcccCHHHHHHHH
Q 026436 174 NNKGHLANILSEIENVHHLSVLSCNVLPFG-NSTVDITVVAQMDVESDVTVKDLVKNL 230 (238)
Q Consensus 174 ~~~g~L~~il~~Le~l~~L~V~~a~is~~~-~~~l~~~i~~q~~~~~~~~~~dL~~~L 230 (238)
|++|.|.+|+..+..- |++|-+-++.... +.+..+++.+.-.+ -.++.|.+.|
T Consensus 1 n~~GvL~Ri~~vf~rR-g~nI~sl~v~~~~~~~~~riti~v~~~~---~~i~~l~~Ql 54 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRR-GFNIESLSVGPTEDPGISRITIVVSGDD---REIEQLVKQL 54 (63)
T ss_dssp SSTTHHHHHHHHHHTT-T-EECEEEEEE-SSTTEEEEEEEEES-C---CHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhcC-CeEEeeEEeeecCCCCEEEEEEEEeeCc---hhHHHHHHHH
Confidence 4799999999999999 9999998887743 33455666555322 3444444444
No 102
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=80.12 E-value=0.91 Score=44.74 Aligned_cols=60 Identities=25% Similarity=0.395 Sum_probs=49.9
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhhcCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 026436 54 SHAQDHVIAERKRREKLNQRFIALSALVPGL-----KKTDKASILGDSIKYLKQLQERVKALEEQ 113 (238)
Q Consensus 54 ~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~-----~k~~k~~il~~ai~yi~~L~~~~~~l~~~ 113 (238)
.+...|.-+|++||.+++-.|..|.+++-+. .|+.+..-+...+.||..++++...+.++
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e 714 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEE 714 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchh
Confidence 5677899999999999999999999998765 45566666899999999988877766654
No 103
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=79.56 E-value=2.4 Score=28.35 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=35.1
Q ss_pred EEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 168 IHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 168 i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
+.+.. ++|+|.+|+..|.+. |..+...+....++.. .+.+ .++.. ..+++.+.|++
T Consensus 4 ~~~~d--~~g~l~~i~~~l~~~-~~nI~~~~~~~~~~~a-~~~~--~~~~~---~l~~li~~l~~ 59 (69)
T cd04901 4 HIHKN--VPGVLGQINTILAEH-NINIAAQYLQTRGEIG-YVVI--DIDSE---VSEELLEALRA 59 (69)
T ss_pred EEecC--CCcHHHHHHHHHHHc-CCCHHHHhccCCCCEE-EEEE--EcCCC---CCHHHHHHHHc
Confidence 34555 899999999999999 9988666544333222 2233 33332 44566666653
No 104
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=79.13 E-value=15 Score=33.70 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=45.9
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe----cCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF----GNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~----~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.+..+.+.|..+. ++|.|.++++.+.+. |.+|++...... ......++|.++..+ .-..++|.+.|+.
T Consensus 302 ~gr~~~l~v~l~D--~pG~L~~v~~~i~~~-~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~--~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPD--RPGALYHLLESIAEA-RANIVKIDHDRLSKEIPPGFAMVEITLETRG--KEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCC--CCCHHHHHHHHHhcC-CCcEEEEEeeccccCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 4556788888888 999999999999999 999988765422 112333556666543 2334456665544
No 105
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=78.99 E-value=20 Score=25.39 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=41.1
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC-eEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN-STVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~-~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
.|.+.... ++|.|.+|+..+..- |+.|.+-++....+ .+..+++.+ ++ .-.++.|.+-|.
T Consensus 5 ~lsi~v~n--~pGVL~Ri~~lf~rR-GfnI~sl~v~~t~~~~~sriti~v--~~--~~~i~ql~kQL~ 65 (76)
T PRK11152 5 QLTIKARF--RPEVLERVLRVVRHR-GFQVCSMNMTQNTDAQNINIELTV--AS--ERPIDLLSSQLN 65 (76)
T ss_pred EEEEEEEC--CccHHHHHHHHHhcC-CeeeeeEEeeecCCCCEEEEEEEE--CC--CchHHHHHHHHh
Confidence 45566666 999999999999999 99999988776533 344455555 33 344455555544
No 106
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=78.78 E-value=9.7 Score=35.99 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=46.1
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
..|-+.... ++|.|.++|+.+... |+++.+-...........|.|.+.+++...-.++++.+.|++
T Consensus 17 TSLiFsL~d--~pGaL~~vL~vFa~~-gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~ 82 (436)
T TIGR01268 17 TSLIFSLKE--EAGALAETLKLFQAH-DVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQ 82 (436)
T ss_pred EEEEEEcCC--CCcHHHHHHHHHHHC-CCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHH
Confidence 344455566 899999999999999 999999887776655556666677655332334455555554
No 107
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=78.12 E-value=8.1 Score=38.66 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=44.1
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCc
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVES 219 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~ 219 (238)
.+.|.|...+ ++|+|.+|+++|-+. +..|.+.++.+.++.+..+.|..++.+-.
T Consensus 627 ~~~i~v~~~~--r~glL~~i~~~i~~~-~~ni~~v~~~~~~~~~~~~~~~i~v~n~~ 680 (701)
T COG0317 627 PVDIEIRAYD--RSGLLRDVSQVLANE-KINVLGVNTRSDKDQFATMQFTIEVKNLN 680 (701)
T ss_pred EEEEEEEEcc--ccchHHHHHHHHHhC-CCceEEeeccccCCceEEEEEEEEECcHH
Confidence 3556666677 999999999999999 99999999888777777677777777643
No 108
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=78.08 E-value=15 Score=36.95 Aligned_cols=70 Identities=10% Similarity=0.172 Sum_probs=54.2
Q ss_pred CCeEEEEEEe-cCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 161 DRDVLIRIHC-EKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 161 ~~~~~I~i~c-~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
+.+-.+.|.. +. ++|.|++++..|--. |+.|.+|++.+ ++... ..|.+.-..+.......+.+.++.++.
T Consensus 544 ~~~~~~~~~~~~~--~~~~~~~~~~~~a~~-~~~~~~a~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 544 EEDGFFTVIWHGD--YPRELVRVLALIAAK-GWNILSARMVA-NGPWS-AEFDVRANGPQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred ccCCeEEEEecCC--cccHHHHHHHHHHhc-CceeeEeEEec-CCceE-EEEEEecCCCCCCChHHHHHHHHHhhc
Confidence 3334555555 88 899999999999999 99999999999 55444 356666677777888888888888764
No 109
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=75.06 E-value=18 Score=26.30 Aligned_cols=62 Identities=11% Similarity=0.262 Sum_probs=42.5
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC-eEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN-STVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~-~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
.|.+.... ++|.|.+|...|-.. |+.+.+-++....+ .+-.++|++..+++ -.++.+.+.|.
T Consensus 4 ~isvlVeN--~~GVL~Rit~lFsRR-g~NI~SLtvg~Te~~~iSRmtivv~~~d~--~~ieqI~kQL~ 66 (84)
T PRK13562 4 ILKLQVAD--QVSTLNRITSAFVRL-QYNIDTLHVTHSEQPGISNMEIQVDIQDD--TSLHILIKKLK 66 (84)
T ss_pred EEEEEEEC--CCCHHHHHHHHHhcc-CcCeeeEEecccCCCCceEEEEEEeCCCH--HHHHHHHHHHh
Confidence 45666777 999999999999999 99998888766543 34445676654332 33445555444
No 110
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=74.38 E-value=22 Score=29.37 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=43.7
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec-CeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG-NSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~-~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.|.+...+ +||+|.+|...|... |++|.+-++.... ...-.++|++. ++... +++|.+.|..-+
T Consensus 4 ~isvlv~n--~PGVL~RIt~lFsrR-g~NIesLsv~~t~~~~~sr~TIvv~--~~~~~-ieqL~kQL~KLi 68 (174)
T CHL00100 4 TLSVLVED--ESGVLTRIAGLFARR-GFNIESLAVGPAEQKGISRITMVVP--GDDRT-IEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEeC--cCCHHHHHHHHHHhC-CCCeeEEEeeEcCCCCccEEEEEEE--CCHHH-HHHHHHHHHHHh
Confidence 46677777 999999999999999 9999998875522 22334556554 33222 566666665543
No 111
>PRK11898 prephenate dehydratase; Provisional
Probab=74.01 E-value=19 Score=31.92 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=40.0
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCC
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVE 218 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~ 218 (238)
..|-+.... +++|.|.++|+.|... |+.+.+-......++...|.|.+.+++.
T Consensus 197 tslif~l~~-~~pGsL~~~L~~F~~~-~INLt~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 197 TSLVLTLPN-NLPGALYKALSEFAWR-GINLTRIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred EEEEEEeCC-CCccHHHHHHHHHHHC-CCCeeeEecccCCCCCccEEEEEEEEcc
Confidence 344455544 1499999999999999 9999999888877666667777776653
No 112
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=73.16 E-value=23 Score=23.10 Aligned_cols=61 Identities=8% Similarity=0.182 Sum_probs=37.3
Q ss_pred EEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 165 LIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 165 ~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.|.+.+.. .+.+|.+.+|+++|.+. |+.|.-.+.+. .+ .++++.+.- -..++..+.|+.+|
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~-~I~v~~i~~~~-s~--~~is~~v~~-----~~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKA-NVNIRAIAQGS-SE--RNISAVIDE-----DDATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHC-CCCEEEEEecC-cc--cEEEEEEeH-----HHHHHHHHHHHHHH
Confidence 45565543 23689999999999999 99986654322 22 222333322 22455677777765
No 113
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=72.78 E-value=9.8 Score=28.00 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=46.1
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALRK 236 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~ 236 (238)
+.|.|.-.+ |+|+-..|..+|-++ |++++..+=+-..+++ ...+.+.... ...+...+...|..+...
T Consensus 4 avITV~GkD--r~GIva~is~vLAe~-~vNIldisQtvm~~~f-tm~~lV~~~~-~~~d~~~lr~~l~~~~~~ 71 (90)
T COG3830 4 AVITVIGKD--RVGIVAAVSRVLAEH-GVNILDISQTVMDGFF-TMIMLVDISK-EVVDFAALRDELAAEGKK 71 (90)
T ss_pred EEEEEEcCC--CCchhHHHHHHHHHc-CCcEEEHHHHHHhhhc-eeeeEEcCCh-HhccHHHHHHHHHHHHHh
Confidence 566777777 999999999999999 9999998755555543 3344454432 235555666666555443
No 114
>PRK06382 threonine dehydratase; Provisional
Probab=72.41 E-value=23 Score=32.87 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=43.8
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEE----EecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVL----PFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is----~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.+..+.+.|..+. ++|.|.+|++.|.+. +.+|++.... ........++|.++..+. -..++|.+.|+.
T Consensus 327 ~~~~~rl~v~v~D--~pG~L~~l~~ii~~~-~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~--~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPD--RPGNLYRIANAIASN-GGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ--DHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCC--CCCHHHHHHHHHhcC-CCcEEEEEEeeccccCCCCcEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 4556778888888 999999999999999 9999887653 222222234555554321 222355555543
No 115
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=71.96 E-value=33 Score=24.36 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=35.6
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec-CeEEEEEEEEE
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG-NSTVDITVVAQ 214 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~-~~~l~~~i~~q 214 (238)
.|.+.... ++|.|.+|...+..- |+.|.+-++.... ..+..++|.+.
T Consensus 4 tisi~v~n--~pGVL~Ri~~lf~rR-gfNI~Sl~vg~te~~~~sriti~~~ 51 (76)
T PRK06737 4 TFSLVIHN--DPSVLLRISGIFARR-GYYISSLNLNERDTSGVSEMKLTAV 51 (76)
T ss_pred EEEEEEec--CCCHHHHHHHHHhcc-CcceEEEEecccCCCCeeEEEEEEE
Confidence 45666777 999999999999999 9999988876544 33445566654
No 116
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=71.60 E-value=18 Score=24.06 Aligned_cols=31 Identities=6% Similarity=0.149 Sum_probs=25.6
Q ss_pred EEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE
Q 026436 168 IHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP 201 (238)
Q Consensus 168 i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~ 201 (238)
+.... ++|.+.+|.+.|.+. |+.+.+.....
T Consensus 4 v~~~d--~~G~l~~i~~~l~~~-~inI~~~~~~~ 34 (73)
T cd04902 4 VRNTD--RPGVIGKVGTILGEA-GINIAGMQVGR 34 (73)
T ss_pred EEeCC--CCCHHHHHHHHHHHc-CcChhheEeec
Confidence 45566 899999999999999 99998776544
No 117
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=71.54 E-value=27 Score=30.95 Aligned_cols=65 Identities=11% Similarity=0.223 Sum_probs=45.2
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe--cCeEEEEEEEEEecCCc-ccCHHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF--GNSTVDITVVAQMDVES-DVTVKDLVKNLQP 232 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~--~~~~l~~~i~~q~~~~~-~~~~~dL~~~L~~ 232 (238)
..+.+.++|+. ++|+...|-..|-+. |..|+.++-.+. ++++| ..+....+. ..+.+.|...+..
T Consensus 6 ~~~~LtvsCpd--~~GiVaais~~l~~~-g~NI~~~~qf~D~~~g~FF---mR~~f~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPD--QPGIVAAISGFLAEH-GCNIVDSDQFDDPETGRFF---MRVEFEGEGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCC--CCCcHHHHHHHHHHc-CCceeecccccccccCeEE---EEEEEecCCCcccHHHHHHHHHH
Confidence 45778999999 999999999999999 999999874432 22232 233333222 2676666666655
No 118
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.47 E-value=36 Score=24.12 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=29.2
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecC
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDV 217 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~ 217 (238)
.++.+..+. +||-|.+++++|-.- +|...........--.+.|..++.+
T Consensus 2 ~vl~v~ipD--~PG~L~~ll~~l~~a---nI~~~~y~~~~~~~~~v~i~ie~~~ 50 (85)
T cd04906 2 ALLAVTIPE--RPGSFKKFCELIGPR---NITEFNYRYADEKDAHIFVGVSVAN 50 (85)
T ss_pred eEEEEecCC--CCcHHHHHHHHhCCC---ceeEEEEEccCCCeeEEEEEEEeCC
Confidence 457788888 999999999988733 4444333332211122345556544
No 119
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=67.79 E-value=34 Score=30.42 Aligned_cols=54 Identities=7% Similarity=0.100 Sum_probs=44.2
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCc
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVES 219 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~ 219 (238)
...|-+..+. +||.|.++|..|... |++...-.+-....+...|.|.+.+++..
T Consensus 194 kTsl~f~~~n--~PGaL~~~L~~Fa~~-gINlTkIESRP~k~~~~~Y~F~iD~eg~~ 247 (279)
T COG0077 194 KTSLIFSVPN--KPGALYKALGVFAKR-GINLTKIESRPLKTGLGEYLFFIDIEGHI 247 (279)
T ss_pred eEEEEEEcCC--CCchHHHHHHHHHHc-CcceeeEeecccCCCCeeEEEEEEEecCc
Confidence 3344455555 899999999999999 99999998888888888888888887644
No 120
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=67.65 E-value=36 Score=31.61 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=41.0
Q ss_pred EEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCC
Q 026436 168 IHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVE 218 (238)
Q Consensus 168 i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~ 218 (238)
+..++ ++|.|.++|..|... |++...-..-...+..+.|.|.+.+.+.
T Consensus 302 ~~~~~--~pGaL~~~L~~Fa~~-giNLtkIeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 302 MATGQ--QAGALVEALLVLRNH-NLIMTKLESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred EEcCC--CCcHHHHHHHHHHHc-CCCeeEEEeeecCCCCceEEEEEEEeCC
Confidence 44455 899999999999999 9999999888888888888888888763
No 121
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=63.73 E-value=26 Score=33.38 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=42.8
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEE-EEEEEEecCCcccCHHHHHHHHHH
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVD-ITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~-~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
+.|-+.... ++|.|.++|+.++.. |+.+.+-........... |.|.+.++... -.+.++...|++
T Consensus 32 tSLIFsL~d--~pGaL~~vL~vFa~~-gINLThIESRPsk~~~~e~Y~FfVD~Eg~~-~~l~~aL~~Lk~ 97 (464)
T TIGR01270 32 LSIIFSLSN--VVGDLSKAIAIFQDR-HINILHLESRDSKDGTSKTMDVLVDVELFH-YGLQEAMDLLKS 97 (464)
T ss_pred EEEEEECCC--CchHHHHHHHHHHHC-CCCEEEEECCcCCCCCCccEEEEEEEEcCH-HHHHHHHHHHHH
Confidence 344455566 799999999999999 999999887776555444 45555554332 234444444443
No 122
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=61.30 E-value=36 Score=22.13 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 175 NKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
.+|.+.+|+++|++. |+.|....
T Consensus 13 ~~~~~~~if~~l~~~-~i~v~~i~ 35 (62)
T cd04890 13 EVGFLRKIFEILEKH-GISVDLIP 35 (62)
T ss_pred ccCHHHHHHHHHHHc-CCeEEEEe
Confidence 689999999999999 99888764
No 123
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=60.20 E-value=89 Score=26.92 Aligned_cols=67 Identities=9% Similarity=0.271 Sum_probs=42.6
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC--eE-EEEEEEEEecCCcccCHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN--ST-VDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~--~~-l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
....+.|.|...........+++.|++. ++.+.+.++..+.+ .+ ++..+.++ .......++++..|.
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~-~~~~~~l~~~~~~~~~~~ei~a~l~~~--~~~~~~le~iv~~L~ 210 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEA-AICLQGLGSVPAQEQGYKEIRAELVGH--ADYRKTRELIISRIG 210 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhC-CCceEEeEeeecCCCCeEEEEEEEEec--CCchhhHHHHHHHHh
Confidence 3567889998822224578888999999 99999999876642 22 33333333 323345566666553
No 124
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=59.44 E-value=7.4 Score=31.44 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC--CCChhhHHHHHHHHHHHHHH
Q 026436 62 AERKRREKLNQRFIALSALVPGLK--KTDKASILGDSIKYLKQLQE 105 (238)
Q Consensus 62 ~Er~RR~~i~~~~~~L~~lvP~~~--k~~k~~il~~ai~yi~~L~~ 105 (238)
.|+.|-.++++.+.-|+.|+|+.. ++.+.--|.-+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 588899999999999999999862 22222225556666665544
No 125
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.30 E-value=61 Score=22.98 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=40.7
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
+++.|.-+. +||.|.+.++.| .- +.+|..-+..-.++..-++.+-+++.+. ..++|.+.|+.
T Consensus 2 ~~~~v~iPE--rpGal~~Fl~~l-~p-~~~ITeF~YR~~~~~~a~vlvGi~~~~~---~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPE--RPGALKKFLNEL-LP-KWNITLFHYRNQGSDYGRVLVGIQVPDA---DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCC--CCCHHHHHHHHh-CC-CCeEeEEEEecCCCCceeEEEEEEeChH---HHHHHHHHHHH
Confidence 567788888 999999999888 33 5677776665555443334555565542 55566666654
No 126
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=58.43 E-value=57 Score=22.73 Aligned_cols=49 Identities=14% Similarity=0.314 Sum_probs=34.0
Q ss_pred CCeeeEEeeCCeEEEEEEecCCC-C---CcHHHHHHHHHHhcCCeeEEEEEEEE
Q 026436 152 LPEIEVRVSDRDVLIRIHCEKNN-N---KGHLANILSEIENVHHLSVLSCNVLP 201 (238)
Q Consensus 152 ~~~V~V~~~~~~~~I~i~c~~~~-~---~g~L~~il~~Le~l~~L~V~~a~is~ 201 (238)
...|.+++.++.+.|.|.+.... . ..-+..+-++|... |+.+.+.++..
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~-G~~~~~~~v~~ 78 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQ-GLEVVNLSVSQ 78 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTT-T-EEEEEEEES
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHC-CCCeEEEEEEE
Confidence 35677788899999999998821 0 12377888999999 99999877654
No 127
>PRK08526 threonine dehydratase; Provisional
Probab=58.24 E-value=49 Score=30.84 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=46.1
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCe----EEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNS----TVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~----~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
.+..+.+.+..+. +||.|.+++..+-+. +.+|+.......... -..+.|.++..+. -..++|...|+
T Consensus 323 ~~r~~~~~~~~~d--~pg~l~~~~~~~~~~-~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~l~ 393 (403)
T PRK08526 323 SYRKMKLHVTLVD--KPGALMGLTDILKEA-NANIVKIDYDRFSTKLDYGDAMISITLETKGK--EHQEEIRKILT 393 (403)
T ss_pred cCCEEEEEEEcCC--CCCHHHHHHHHHccC-CCcEEEEEEEeccCCCCCccEEEEEEEEeCCH--HHHHHHHHHHH
Confidence 4567888999999 999999999999999 999998887554333 1223455555432 23345555553
No 128
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=57.44 E-value=13 Score=21.81 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026436 63 ERKRREKLNQRFIALSA 79 (238)
Q Consensus 63 Er~RR~~i~~~~~~L~~ 79 (238)
=|+||+.++.++..||+
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37889999999999985
No 129
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=55.12 E-value=59 Score=21.47 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=34.7
Q ss_pred EEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 166 IRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 166 I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
|.+.... ...+|++.+++++|... |+.|.... + .+. .+.+.+. . -..++.++.|+..|
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~-~I~v~~~~--~-Se~--~is~~v~--~---~~~~~av~~Lh~~f 62 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKE-GIEILQTA--D-SHT--TISCLVS--E---DDVKEAVNALHEAF 62 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHC-CCCEEEEE--c-Ccc--EEEEEEc--H---HHHHHHHHHHHHHh
Confidence 4444443 23689999999999999 99997433 2 121 2223332 1 22345667777665
No 130
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.03 E-value=45 Score=23.66 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.3
Q ss_pred CCcHHHHHHHHHHhcCCeeEEEE
Q 026436 175 NKGHLANILSEIENVHHLSVLSC 197 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~L~V~~a 197 (238)
.-|++.++|+.||.+ |+.+-+.
T Consensus 14 evGF~rk~L~I~E~~-~is~Eh~ 35 (76)
T cd04911 14 EVGFGRKLLSILEDN-GISYEHM 35 (76)
T ss_pred hhcHHHHHHHHHHHc-CCCEeee
Confidence 469999999999999 9888774
No 131
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.94 E-value=59 Score=21.16 Aligned_cols=61 Identities=8% Similarity=0.134 Sum_probs=35.5
Q ss_pred EEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 165 LIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 165 ~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
+|.+.... .+.+|.+.+++++|.+. |++|.-...+.-+ . .+.|.+. . -..++..+.|+..|
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~-~I~v~~i~q~~s~-~--~isf~v~--~---~~~~~a~~~lh~~~ 64 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADH-RINIEMISQGASE-I--NISCVID--E---KDAVKALNIIHTNL 64 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHC-CCCEEEEEecCcc-c--eEEEEEe--H---HHHHHHHHHHHHHH
Confidence 34454443 23689999999999999 9998655433322 2 2223332 1 12345566666654
No 132
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=53.49 E-value=71 Score=21.90 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=24.3
Q ss_pred EEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 165 LIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 165 ~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
.|.|.+.. ...+|.+.+|+++|.+. |+.|....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~-~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKH-GLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHc-CCeEEEEE
Confidence 34453332 23689999999999999 99997764
No 133
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=51.59 E-value=78 Score=21.87 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=24.9
Q ss_pred EEEEEecCC-CCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 165 LIRIHCEKN-NNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 165 ~I~i~c~~~-~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
.|.|..... ..+|.+.+|+++|.+. |+.|-.-.
T Consensus 3 ~I~i~~~~m~~~~g~~~~If~~la~~-~I~vd~I~ 36 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKY-RLSVDLIS 36 (73)
T ss_pred EEEEEcccCccccCHHHHHHHHHHHc-CCcEEEEE
Confidence 455555552 3689999999999999 98777664
No 134
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=50.63 E-value=61 Score=20.33 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=25.3
Q ss_pred EEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEE
Q 026436 165 LIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNV 199 (238)
Q Consensus 165 ~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~i 199 (238)
.|.|.+.. .+.++.+.+++++|.+. ++.|.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~-~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEA-GINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHC-CCcEEEEEc
Confidence 35565443 23678999999999999 998887654
No 135
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.43 E-value=54 Score=22.02 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 026436 62 AERKRREKLNQRFIALSALVPGLKKTDKASILGDSIKYLKQLQERVKALEE 112 (238)
Q Consensus 62 ~Er~RR~~i~~~~~~L~~lvP~~~k~~k~~il~~ai~yi~~L~~~~~~l~~ 112 (238)
.=|..|-.+...+..+..++-.+ =.++|.+||+.+-...+.+..
T Consensus 15 ~lR~~RHD~~NhLqvI~gllqlg-------~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQLG-------KYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999887221 167899999999988887743
No 136
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.44 E-value=87 Score=21.74 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.3
Q ss_pred CCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 175 NKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
.+|.+.+|+++|.+. |+.|-...
T Consensus 14 ~~g~~~~IF~~La~~-~I~VDmI~ 36 (75)
T cd04932 14 AQGFLAKVFGILAKH-NISVDLIT 36 (75)
T ss_pred CcCHHHHHHHHHHHc-CCcEEEEe
Confidence 689999999999999 98877764
No 137
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=49.42 E-value=1.1e+02 Score=22.82 Aligned_cols=63 Identities=10% Similarity=0.287 Sum_probs=41.9
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCe-EEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNS-TVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~-~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
+...|.+.... ++|.|.+|...|-.- |..|.+-++....+. +-.++|.+. ++ -.++.|.+-|.
T Consensus 7 ~~~tisvlv~N--~pGVL~RIaglFsRR-gyNIeSLtvg~te~~~iSRmtivv~--~~--~~i~Qi~kQL~ 70 (96)
T PRK08178 7 DNVILELTVRN--HPGVMSHVCGLFARR-AFNVEGILCLPIQDGDKSRIWLLVN--DD--QRLEQMISQIE 70 (96)
T ss_pred CCEEEEEEEEC--CcCHHHHHHHHHhcC-CcCeeeEEEeecCCCCceEEEEEEc--Cc--hHHHHHHHHHh
Confidence 34567777777 999999999999998 988888776665532 333455543 21 34555555443
No 138
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.21 E-value=72 Score=21.13 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 175 NKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.+|++.+++++|.+. ++.++.... .-.++++.+.- -..++.++.|+.++
T Consensus 13 ~~gv~~~~~~~L~~~-~i~~i~~~~-----s~~~is~vv~~-----~d~~~av~~LH~~f 61 (63)
T cd04920 13 LLHKLGPALEVFGKK-PVHLVSQAA-----NDLNLTFVVDE-----DQADGLCARLHFQL 61 (63)
T ss_pred CccHHHHHHHHHhcC-CceEEEEeC-----CCCeEEEEEeH-----HHHHHHHHHHHHHH
Confidence 689999999999998 887765432 21223344432 23456777887765
No 139
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.77 E-value=74 Score=20.47 Aligned_cols=61 Identities=10% Similarity=0.116 Sum_probs=36.2
Q ss_pred EEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 165 LIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 165 ~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.|.+.+.. .+.++.+.+++++|.+. |+.|.-.+.+.-+ ..+.|.+.- -..+++.+.|+..|
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~-~I~v~~i~q~~s~---~~isf~i~~-----~~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKA-GINVIMISQGSSE---YNISFVVAE-----DDGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHC-CCCEEEEEecCcc---ceEEEEEeH-----HHHHHHHHHHHHHh
Confidence 44555443 23679999999999999 9888554432212 223343432 22455666777665
No 140
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.35 E-value=76 Score=20.47 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=36.0
Q ss_pred EEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 165 LIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 165 ~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
+|.+.+.. .+.++.+.+++.+|.+. |+.|.-.+... .+ ..++|.+.- -..++..+.|+++|
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~-~i~v~~i~~~~-s~--~~isf~v~~-----~d~~~~~~~lh~~~ 64 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKA-GINIRMINQGS-SE--ISIMIGVHN-----EDADKAVKAIYEEF 64 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHC-CCCEEEEEecC-cc--cEEEEEEeH-----HHHHHHHHHHHHHH
Confidence 35555543 23689999999999999 99886554322 11 222333321 22345566666665
No 141
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.97 E-value=33 Score=24.01 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 026436 93 LGDSIKYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 93 l~~ai~yi~~L~~~~~~l~~~~~~ 116 (238)
+..||+.|.-||-++++|++++..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~ 36 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 678999999999999999987653
No 142
>PLN02705 beta-amylase
Probab=46.54 E-value=50 Score=32.67 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=19.6
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhc
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSAL 80 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~l 80 (238)
...+......||+||.=-...|.-||..
T Consensus 82 ~~e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 82 EKEKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 4467788889999997555556666643
No 143
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=44.99 E-value=2.4e+02 Score=26.25 Aligned_cols=67 Identities=7% Similarity=0.108 Sum_probs=42.9
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE-ecCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP-FGNSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~-~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
.+..+.+.+..+. +||-|.++++.+-.. +.+|+....-. .+...-.+.|.+++.+.. ..++|.+.|.
T Consensus 322 ~~r~~~~~v~ipd--rPGaL~~~l~~i~~~-~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~--h~~~i~~~L~ 389 (409)
T TIGR02079 322 EGLKHYFIVRFPQ--RPGALREFLNDVLGP-NDDITRFEYTKKSNRETGPALIGIELNDKE--DFAGLLERMA 389 (409)
T ss_pred cCCEEEEEEEeCC--CCCHHHHHHHHHhcC-CCcEEEEEeeecCCCCeEEEEEEEEeCCHH--HHHHHHHHHH
Confidence 4667889999999 999999999977777 66888766542 222222345666655421 2334444443
No 144
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=44.92 E-value=7.9 Score=38.47 Aligned_cols=61 Identities=26% Similarity=0.297 Sum_probs=49.9
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhcCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSALVPGL-----KKTDKASILGDSIKYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~-----~k~~k~~il~~ai~yi~~L~~~~~~l~~~~~~ 116 (238)
.-....|...+|++|-.+.++|..|-.|.|.. .+..+.+||. +.|+.+++.-+.+.+....
T Consensus 785 ~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 785 GMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred ceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 34456799999999999999999999999854 5678899998 8888888888887775443
No 145
>PLN02317 arogenate dehydratase
Probab=43.89 E-value=1.5e+02 Score=27.57 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=36.7
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCe--------------EEEEEEEEEecC
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNS--------------TVDITVVAQMDV 217 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~--------------~l~~~i~~q~~~ 217 (238)
..|-+..+. ++|.|.++|.+|... ++++..-........ .+.|.|.+.++.
T Consensus 284 TSivfsl~~--~pG~L~k~L~~Fa~~-~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg 348 (382)
T PLN02317 284 TSIVFSLEE--GPGVLFKALAVFALR-DINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEA 348 (382)
T ss_pred EEEEEEcCC--CCchHHHHHHHHHHC-CCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEc
Confidence 334444455 899999999999999 999988887665443 255666666554
No 146
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=42.10 E-value=1e+02 Score=20.57 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 175 NKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.+|.+.+++++|.+. |++|.-.+.+.-+ .++++.+. + -..++.++.|+.+|
T Consensus 14 ~~gv~~ki~~~L~~~-~I~v~~i~~~~s~---~~is~~V~--~---~~~~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEA-GIEPIAAHQSMRN---VDVQFVVD--R---DDYDNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHC-CCCEEEEEecCCe---eEEEEEEE--H---HHHHHHHHHHHHHH
Confidence 578999999999999 9999665533322 22223332 1 23557778887776
No 147
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=42.05 E-value=51 Score=22.14 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=27.9
Q ss_pred CCeEEEEEEecC-C-CCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 161 DRDVLIRIHCEK-N-NNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 161 ~~~~~I~i~c~~-~-~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
++-..|.|.... . +.+|.+.+++.+|.+. |+.|...+
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~-~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEA-GINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHT-TS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHC-CCCEEEEE
Confidence 344567777773 2 2789999999999999 99998766
No 148
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=41.50 E-value=1.1e+02 Score=23.14 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHhcCC--eeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 175 NKGHLANILSEIENVHH--LSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~--L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
..|+|.++|+.+... | ++|+.+++-.-.+..-+..+.+..++ .-.+++|...|++
T Consensus 14 DSgil~~vLD~I~d~-GG~F~i~~~~vG~~~~d~S~a~l~V~a~d--~~~L~~Il~~L~~ 70 (103)
T PF04455_consen 14 DSGILNRVLDIIMDM-GGDFEILEFDVGKSKDDTSYARLQVSAPD--EEHLDEILDELHQ 70 (103)
T ss_dssp TSSHHHHHHHHHHHT-T-EEEEEEEE--SSTTS-EEEEEEEEESS--HHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhc-CCCEEEEEEEeCCCCCCceeEEEEEecCC--HHHHHHHHHHHHH
Confidence 479999999999988 7 68999987655544433334444333 3345566665554
No 149
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=40.67 E-value=1e+02 Score=22.02 Aligned_cols=69 Identities=10% Similarity=0.239 Sum_probs=40.4
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCc--ccCHHHHHHHHHHHHHh
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVES--DVTVKDLVKNLQPALRK 236 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~--~~~~~dL~~~L~~al~~ 236 (238)
.|++|... -..-...+++.|++..+++|+...-...-+.... ..-|-+++.. .-+.++|.++|...|..
T Consensus 4 iVefC~~N--l~~g~~~~~~~Le~~p~~~Vie~gCl~~Cg~C~~-~pFAlVnG~~V~A~t~eeL~~kI~~~i~e 74 (78)
T PF07293_consen 4 IVEFCVSN--LASGTDQVYEKLEKDPDIDVIEYGCLSYCGPCAK-KPFALVNGEIVAAETAEELLEKIKEKIEE 74 (78)
T ss_pred eEEEcccC--chhhhHHHHHHHhcCCCccEEEcChhhhCcCCCC-CccEEECCEEEecCCHHHHHHHHHHHHhc
Confidence 45666555 3322556888898887899876543333332211 1223333321 23789999999988853
No 150
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=40.48 E-value=70 Score=24.96 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=32.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCe
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNS 205 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~ 205 (238)
.|.+..+. ++|-|..++..|.+. |+.+---++.-.++|
T Consensus 5 QISvFlEN--k~GRL~~~~~~L~ea-gINiRA~tiAdt~dF 42 (142)
T COG4747 5 QISVFLEN--KPGRLASVANKLKEA-GINIRAFTIADTGDF 42 (142)
T ss_pred EEEEEecC--CcchHHHHHHHHHHc-CCceEEEEeccccCc
Confidence 45677777 999999999999999 999988887776665
No 151
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.17 E-value=52 Score=23.08 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026436 93 LGDSIKYLKQLQERVKALEEQTS 115 (238)
Q Consensus 93 l~~ai~yi~~L~~~~~~l~~~~~ 115 (238)
+..||+-|.-|+.++.+|++++.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998644
No 152
>PRK08639 threonine dehydratase; Validated
Probab=39.92 E-value=1.5e+02 Score=27.70 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=42.1
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe-cCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF-GNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~-~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.+..+.+++..+. +||-|.++++.+-.. +-+|+....... +...-.+.|.++..+.. ..+++.+.|.+
T Consensus 333 ~~r~~~~~v~ipd--rPGaL~~~l~~i~~~-~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~--h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQ--RPGALREFLDDVLGP-NDDITRFEYLKKNNRETGPVLVGIELKDAE--DYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCC--CCCHHHHHHHHHhcC-CCcEEEEEEeecCCCCceEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 4667889999999 999999999966665 557776654321 21122344556655422 33455555543
No 153
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=36.28 E-value=2.3e+02 Score=26.05 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=41.8
Q ss_pred EeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 158 RVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 158 ~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
.+..+-..|.+.... .+.+|.+.+++++|.+. |+.|.... +... .+++.+.. -..+..++.|++.+.
T Consensus 332 ~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~-gIni~~i~--~s~~---~is~vv~~-----~d~~~av~~Lh~~f~ 399 (401)
T TIGR00656 332 EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEK-NINILMIG--SSET---NISFLVDE-----KDAEKAVRKLHEVFE 399 (401)
T ss_pred EEeCCeEEEEEECCCcccCccHHHHHHHHHHHC-CCcEEEEE--cCCC---EEEEEEeH-----HHHHHHHHHHHHHHc
Confidence 334455556666544 34799999999999999 99998543 2222 22333432 234566777777663
No 154
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=35.86 E-value=1.7e+02 Score=24.26 Aligned_cols=67 Identities=6% Similarity=0.172 Sum_probs=42.4
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec-----CeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG-----NSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~-----~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
+.+++...+ |+|++-++-+.|..+ |+++.+-...++. ...||..|.+ .-..++++.+|.+.+..-..
T Consensus 93 v~v~v~a~D--rpgIv~~~T~lf~~~-~inie~L~~~~~~a~~s~~~lfha~it~--~lPa~~~i~~l~~~f~al~~ 164 (176)
T COG2716 93 VWVYVDAND--RPGIVEEFTALFDGH-GINIENLVSRTYPAPGSSAPLFHAQITA--RLPANLSISALRDAFEALCD 164 (176)
T ss_pred EEEEEEecC--CccHHHHHHHHHHhc-CCchhhceeeeeecCCCCccceehhhhc--cCCCcCcHHHHHHHHHHHHH
Confidence 445566666 999999999999999 9887766544432 2245444444 34445566666666554433
No 155
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.71 E-value=1.1e+02 Score=19.19 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=20.2
Q ss_pred CCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 175 NKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
.++.+.+++++|.+. ++.|...+
T Consensus 13 ~~~~~~~i~~~L~~~-~i~v~~i~ 35 (63)
T cd04923 13 HPGVAAKMFKALAEA-GINIEMIS 35 (63)
T ss_pred CccHHHHHHHHHHHC-CCCEEEEE
Confidence 579999999999999 98887765
No 156
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=34.88 E-value=2.4e+02 Score=23.00 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=35.4
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe---cCeEEEEEEEEEec
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF---GNSTVDITVVAQMD 216 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~---~~~~l~~~i~~q~~ 216 (238)
+.+-|..+. +||.|..+|+-|-+. |.+|++..-+.- ++++ .+.|+.+++
T Consensus 6 itldIEL~D--~PGQLl~vLqPls~~-g~NiItIiH~r~kk~g~r~-pV~i~~~~d 57 (170)
T COG2061 6 ITLDIELKD--KPGQLLKVLQPLSKT-GANIITIIHSRDKKYGPRV-PVQIVFEGD 57 (170)
T ss_pred EEEEEEecC--CCcchhhhhcchhhc-CccEEEEEeecCcccCCce-eEEEEEEec
Confidence 344566677 999999999999999 999988776654 5554 344555544
No 157
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=34.88 E-value=1.2e+02 Score=19.12 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=20.3
Q ss_pred CCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 175 NKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
.++.+.+++++|.+. ++.|...+
T Consensus 13 ~~~~~~~i~~~L~~~-~i~v~~i~ 35 (63)
T cd04936 13 HPGVAAKMFEALAEA-GINIEMIS 35 (63)
T ss_pred CccHHHHHHHHHHHC-CCcEEEEE
Confidence 579999999999999 99887765
No 158
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.64 E-value=1.6e+02 Score=20.30 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=23.7
Q ss_pred EEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 166 IRIHCEK-NNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 166 I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
|.|.... .+.+|++.+|+++|.+. |+.|-.-.
T Consensus 4 i~i~~~~~~~~~g~~~~IF~~La~~-~I~vDmI~ 36 (75)
T cd04935 4 VSMETLGMWQQVGFLADVFAPFKKH-GVSVDLVS 36 (75)
T ss_pred EEEEcCCCCCccCHHHHHHHHHHHc-CCcEEEEE
Confidence 4444333 23689999999999999 98877764
No 159
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.41 E-value=70 Score=22.91 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 026436 93 LGDSIKYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 93 l~~ai~yi~~L~~~~~~l~~~~~~ 116 (238)
+..||+-|.-||-++.+|++++..
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~ 36 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999987654
No 160
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.94 E-value=1.8e+02 Score=20.42 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=24.9
Q ss_pred EEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 165 LIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 165 ~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
+|.|.... .+.+|.+.+|+++|++. |+.|-...
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~-~InVDmI~ 36 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETL-GISVDVVA 36 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHc-CCcEEEEE
Confidence 45555544 23689999999999999 98777764
No 161
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=31.51 E-value=3.9e+02 Score=25.36 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=27.3
Q ss_pred eeCCeEEEEEEecCC-CCCcHHHHHHHHHHhcCCeeEE
Q 026436 159 VSDRDVLIRIHCEKN-NNKGHLANILSEIENVHHLSVL 195 (238)
Q Consensus 159 ~~~~~~~I~i~c~~~-~~~g~L~~il~~Le~l~~L~V~ 195 (238)
+..+-.+|.|.+.++ ..-|+|.+|+..|+.+ |+.|-
T Consensus 389 lK~nv~mldI~Str~l~q~GFLAkvFti~ek~-~isVD 425 (559)
T KOG0456|consen 389 LKRNVTMLDIASTRMLGQHGFLAKVFTIFEKL-GISVD 425 (559)
T ss_pred EeccEEEEEecccchhhhhhHHHHHHHHHHHh-CcEEE
Confidence 345566788887773 2458999999999999 98553
No 162
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=31.37 E-value=3e+02 Score=29.03 Aligned_cols=81 Identities=11% Similarity=0.017 Sum_probs=51.4
Q ss_pred CCCeeeEEeeC-C--eEEEEEEe-cCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHH
Q 026436 151 YLPEIEVRVSD-R--DVLIRIHC-EKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDL 226 (238)
Q Consensus 151 ~~~~V~V~~~~-~--~~~I~i~c-~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL 226 (238)
..|.|++...+ + ++.+-|-- ......++|+.|.+.+.-+ ||.+.++=+-+|.+.+.-|++-++...+......+|
T Consensus 215 ~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~-~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~ 293 (1002)
T PTZ00324 215 VGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFH-GAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSI 293 (1002)
T ss_pred CCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhc-CCccceEEEEEeeCCcEEEEEEEecCCCCCcccccH
Confidence 34667776554 3 33444433 3323568999999999999 999999999999776655677776544332222344
Q ss_pred HHHHHH
Q 026436 227 VKNLQP 232 (238)
Q Consensus 227 ~~~L~~ 232 (238)
.+.+++
T Consensus 294 ~~~~~~ 299 (1002)
T PTZ00324 294 EDRASL 299 (1002)
T ss_pred HHHHHh
Confidence 444443
No 163
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=30.54 E-value=2.7e+02 Score=26.83 Aligned_cols=65 Identities=12% Similarity=0.222 Sum_probs=40.8
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
.+.++.+.|.-+. +||-|.++++.|-.- ++.-++-. ..+...-+++|.+++.+. -..++|.+.|+
T Consensus 322 ~~re~~l~V~iPe--rPGal~~f~~~i~~~-nItef~yr--~~~~~~a~v~vgie~~~~--~~~~~l~~~L~ 386 (499)
T TIGR01124 322 EQREALLAVTIPE--QPGSFLKFCELLGNR-NITEFNYR--YADRKDAHIFVGVQLSNP--QERQEILARLN 386 (499)
T ss_pred cCCEEEEEEEeCC--CCCHHHHHHHHhhhc-ceEEEEEE--ecCCCeEEEEEEEEeCCH--HHHHHHHHHHH
Confidence 3568999999999 999999999999874 44433333 233223345566666532 23345555554
No 164
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.37 E-value=1.4e+02 Score=18.41 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHHhcCCeeEEEEEE
Q 026436 175 NKGHLANILSEIENVHHLSVLSCNV 199 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~L~V~~a~i 199 (238)
.+|.+.+++++|.+. |+.|...+.
T Consensus 11 ~~~~~~~i~~~L~~~-~i~i~~i~~ 34 (61)
T cd04891 11 KPGVAAKIFSALAEA-GINVDMIVQ 34 (61)
T ss_pred CCcHHHHHHHHHHHc-CCcEEEEEE
Confidence 689999999999999 998876543
No 165
>PLN02551 aspartokinase
Probab=30.15 E-value=4.1e+02 Score=25.79 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=44.3
Q ss_pred EEeeCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 157 VRVSDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 157 V~~~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
|.+..+-..|.|...-...+|++.+++.+|.+. |+.|.-.+..+ .-.++++.+.- -..+..++.||.++.
T Consensus 439 V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~-gInV~mIsqga---SeinIS~vV~~-----~d~~~Av~aLH~~Ff 508 (521)
T PLN02551 439 VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTN-GVNVQMISQGA---SKVNISLIVND-----DEAEQCVRALHSAFF 508 (521)
T ss_pred EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHC-CCCeEEEEecC---CCcEEEEEEeH-----HHHHHHHHHHHHHHh
Confidence 344456666777654323689999999999999 99886654322 22233344432 245677888888763
No 166
>PRK07431 aspartate kinase; Provisional
Probab=29.60 E-value=3.9e+02 Score=26.05 Aligned_cols=67 Identities=10% Similarity=0.099 Sum_probs=44.8
Q ss_pred EEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 157 VRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 157 V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
+.+..+-..|.+.-.. .+++|++.+++.+|.+. |+.|+.... +-..+++.+. . -..++.++.|+.++
T Consensus 513 i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~-~I~v~~i~~-----S~~~Is~vV~--~---~~~~~av~~Lh~~f 580 (587)
T PRK07431 513 VEDGPAIAKVSIVGAGMPGTPGVAARMFRALADA-GINIEMIAT-----SEIRTSCVVA--E---DDGVKALQAVHQAF 580 (587)
T ss_pred EEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHC-CCcEEEeec-----cceEEEEEEe--H---HHHHHHHHHHHHHh
Confidence 4455666677776654 24799999999999999 999977652 1122333343 1 34567788888876
No 167
>PRK07431 aspartate kinase; Provisional
Probab=29.50 E-value=3.1e+02 Score=26.78 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=46.1
Q ss_pred eEEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 156 EVRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 156 ~V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
++.+..+-..|.|.... .+.+|++.+++.+|.+. ++.|+..+ + .+.-+ +|.+. . -..+..++.|+..+
T Consensus 341 ~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~-~I~i~~i~--s-Se~~I--s~vv~--~---~d~~~av~~Lh~~f 409 (587)
T PRK07431 341 EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEA-GINIRMIS--T-SEVKV--SCVID--A---EDGDKALRAVCEAF 409 (587)
T ss_pred cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHC-CCcEEEEE--c-CCCEE--EEEEc--H---HHHHHHHHHHHHHh
Confidence 45566777888888765 34789999999999999 99997766 2 12222 23332 1 23556777787776
No 168
>PRK08210 aspartate kinase I; Reviewed
Probab=29.00 E-value=3.4e+02 Score=24.99 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=42.9
Q ss_pred eEEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 156 EVRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 156 ~V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.+.+.++-..|.+.... .+.+|.+.+++++|.+. |+.|+... + .+.-+ ++.+.. -..+..++.|+.++
T Consensus 332 ~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~-~I~i~~~~--~-s~~~i--s~vv~~-----~~~~~a~~~Lh~~f 400 (403)
T PRK08210 332 KPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEE-GIEILQSA--D-SHTTI--WVLVKE-----EDMEKAVNALHDAF 400 (403)
T ss_pred cEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhC-CCCEEEEe--c-CCCEE--EEEEcH-----HHHHHHHHHHHHHh
Confidence 34555666777776554 34789999999999999 99998532 2 22222 233321 12456677777765
No 169
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=28.74 E-value=3.6e+02 Score=25.67 Aligned_cols=69 Identities=23% Similarity=0.346 Sum_probs=46.2
Q ss_pred eEEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 156 EVRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 156 ~V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
++.+..+-..|.+.-.. ...+|...+++++|.+. ++.++-.+ ..-..+.+.+ ++ -..+..++.||++|
T Consensus 376 ~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~-~ini~~is-----sSe~~Is~vV--~~---~~~~~av~~LH~~~ 444 (447)
T COG0527 376 EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEE-NINIIMIS-----SSEISISFVV--DE---KDAEKAVRALHEAF 444 (447)
T ss_pred eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhC-CCcEEEEE-----cCCceEEEEE--cc---HHHHHHHHHHHHHH
Confidence 45566677777776555 34689999999999999 88888766 1112222333 23 23567788888887
Q ss_pred H
Q 026436 235 R 235 (238)
Q Consensus 235 ~ 235 (238)
.
T Consensus 445 ~ 445 (447)
T COG0527 445 F 445 (447)
T ss_pred h
Confidence 4
No 170
>PRK06635 aspartate kinase; Reviewed
Probab=28.54 E-value=3e+02 Score=25.24 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=31.0
Q ss_pred EEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 157 VRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 157 V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
+.+..+...|.|.... .+.+|.+.+++++|.+. |+.|....
T Consensus 334 i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~-~Ini~~i~ 375 (404)
T PRK06635 334 VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEE-GINIQMIS 375 (404)
T ss_pred EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHC-CCCEEEEE
Confidence 3445566678887543 24789999999999999 99997754
No 171
>PRK09224 threonine dehydratase; Reviewed
Probab=28.47 E-value=4.3e+02 Score=25.40 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=39.9
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.+.++.+.|.-+. +||-|.++++.|-.- +|+..+....+...-.++|.+++.+.. -..++|.+.|+.
T Consensus 325 ~~re~~l~v~iPe--rPGaL~~f~~~l~~~---nItef~yr~~~~~~a~V~vgie~~~~~-~~~~~i~~~L~~ 391 (504)
T PRK09224 325 EQREALLAVTIPE--EPGSFLKFCELLGGR---NVTEFNYRYADAKEAHIFVGVQLSRGQ-EERAEIIAQLRA 391 (504)
T ss_pred cCCEEEEEEEeCC--CCCHHHHHHHHhccC---cEEEEEEEecCCCeEEEEEEEEeCChh-hHHHHHHHHHHH
Confidence 3558899999999 999999999988743 444333332222222345566655422 124455555543
No 172
>PRK12483 threonine dehydratase; Reviewed
Probab=28.17 E-value=3.8e+02 Score=25.99 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=35.4
Q ss_pred eCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecC
Q 026436 160 SDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDV 217 (238)
Q Consensus 160 ~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~ 217 (238)
.+..+.+.|..+. +||-|.+++..|-.. +|+.........+--.+.|.++..+
T Consensus 342 ~~r~~~~~v~~~d--~pG~l~~~~~~l~~~---ni~~~~~~~~~~~~~~v~v~ie~~~ 394 (521)
T PRK12483 342 EQREAIIAVTIPE--QPGSFKAFCAALGKR---QITEFNYRYADAREAHLFVGVQTHP 394 (521)
T ss_pred cCCEEEEEEEeCC--CCCHHHHHHHHhhhc---CeEEEEEEecCCCeeEEEEEEEeCC
Confidence 4567889999999 999999999988876 4444443333333233456666544
No 173
>PHA02568 J baseplate assembly protein; Provisional
Probab=27.64 E-value=4e+02 Score=23.83 Aligned_cols=77 Identities=9% Similarity=0.168 Sum_probs=51.2
Q ss_pred eCCeEEEEEEecCC---CCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 026436 160 SDRDVLIRIHCEKN---NNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALRK 236 (238)
Q Consensus 160 ~~~~~~I~i~c~~~---~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~ 236 (238)
.++.+.|.|..... ....++..|-++|... ++.-+...++...-..+.|.|.+.+--......+++.+.++.+|..
T Consensus 164 ~pGtV~V~il~~~~~G~ps~~Ll~~V~~~l~~e-~vrPl~d~VtV~sa~~v~~~I~a~l~l~~g~~~~~v~~~a~~~l~~ 242 (300)
T PHA02568 164 APAEVVVTVLSREGNGTASEDLLAAVRAALNRE-DVRPVTDRVTVQSATIVPYQIRATLYLYPGPDSEVILAAAEARLQA 242 (300)
T ss_pred CCCEEEEEEEcCCCCCCCCHHHHHHHHHHhccc-ccCCCCCEEEEECCEEEEEEEEEEEEEcCCCChHHHHHHHHHHHHH
Confidence 46778888866531 1345677888888776 7777777777777666666666665533334567788888887765
Q ss_pred h
Q 026436 237 F 237 (238)
Q Consensus 237 ~ 237 (238)
+
T Consensus 243 y 243 (300)
T PHA02568 243 Y 243 (300)
T ss_pred H
Confidence 3
No 174
>PRK09034 aspartate kinase; Reviewed
Probab=27.61 E-value=4.2e+02 Score=25.05 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=43.2
Q ss_pred EEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 157 VRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 157 V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
+.+..+...|.|.... .+.+|.+.+++.+|.+. |+.|.-.+..+-. .+++|.+. . -..+...+.|+.++
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~-~InV~mIsq~~Se---~~Is~vV~--~---~d~~~av~~LH~~f 448 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEA-NINIQMINQGSSE---ISIMFGVK--N---EDAEKAVKAIYNAF 448 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHC-CCCEEEEEecCCc---ceEEEEEc--H---HHHHHHHHHHHHHH
Confidence 4555667778886443 23689999999999999 9988765432312 22233332 2 12445677777766
No 175
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=27.57 E-value=88 Score=25.87 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=36.0
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeE
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNST 206 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~ 206 (238)
-++|...-.. +||+.-.|.++.-+. |-.++.+.++.+|+.+
T Consensus 5 ~LvItavg~d--~pgl~~~lar~v~s~-Gcn~leSRla~~g~~~ 45 (176)
T COG2716 5 YLVITAVGAD--RPGLVNTLARAVASS-GCNWLESRLAMLGEEF 45 (176)
T ss_pred EEEEEEecCC--CcHHHHHHHHHHHhc-CCcchHHHHHHhhcce
Confidence 3566677777 999999999999999 9999999999999865
No 176
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=27.43 E-value=79 Score=25.39 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=19.9
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhc
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSAL 80 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~l 80 (238)
-..+.+.+..||+||.=-...|.-||..
T Consensus 9 ~kErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 9 WKERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677889999996556667777764
No 177
>PRK13702 replication protein; Provisional
Probab=27.31 E-value=1.4e+02 Score=21.78 Aligned_cols=31 Identities=10% Similarity=0.152 Sum_probs=20.8
Q ss_pred ccchhhHHHHHHH--HHHHHHHHHHhhcCCCCC
Q 026436 55 HAQDHVIAERKRR--EKLNQRFIALSALVPGLK 85 (238)
Q Consensus 55 ~~~~h~~~Er~RR--~~i~~~~~~L~~lvP~~~ 85 (238)
+...+..+||+|. .+-..-..+|.-.||+.-
T Consensus 20 KG~Pls~aErQr~svaRKr~THkei~vfi~n~l 52 (85)
T PRK13702 20 KGNPLSAAEKQRASVARKRATHKEIKVFIQNPL 52 (85)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhhhheeecHHH
Confidence 3345788999983 445566667887777653
No 178
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=27.24 E-value=4.3e+02 Score=23.16 Aligned_cols=52 Identities=29% Similarity=0.373 Sum_probs=28.7
Q ss_pred cchh-hHHHHHHHHHHHHHHHHHhhcCCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026436 56 AQDH-VIAERKRREKLNQRFIALSALVPGLKKTD-KASILGDSIKYLKQLQERVKALEEQT 114 (238)
Q Consensus 56 ~~~h-~~~Er~RR~~i~~~~~~L~~lvP~~~k~~-k~~il~~ai~yi~~L~~~~~~l~~~~ 114 (238)
+..| ..-|+.-|.|++.+..+=-+ .| |-.-..+-=.-|+.|.++.+.|..+.
T Consensus 60 RL~HLS~EEK~~RrKLKNRVAAQta-------RDrKKaRm~eme~~i~dL~een~~L~~en 113 (292)
T KOG4005|consen 60 RLDHLSWEEKVQRRKLKNRVAAQTA-------RDRKKARMEEMEYEIKDLTEENEILQNEN 113 (292)
T ss_pred hhcccCHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456 45677778888888765322 22 22222222233666766666666543
No 179
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=26.97 E-value=2.1e+02 Score=25.00 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCC--------------------ChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 026436 67 REKLNQRFIALSALVPGLKKT--------------------DKASILGDSIKYLKQLQERVKALEEQTS 115 (238)
Q Consensus 67 R~~i~~~~~~L~~lvP~~~k~--------------------~k~~il~~ai~yi~~L~~~~~~l~~~~~ 115 (238)
|+-|...|..|+..=...... -...||.|+ =||.++.+|++||.++.
T Consensus 6 ~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~--AL~~a~~ri~eLe~ql~ 72 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQ--ALKQAQARIQELEAQLQ 72 (247)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 456788888888764432111 122333332 26788899999998864
No 180
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.68 E-value=1.9e+02 Score=19.00 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 175 NKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.+|.+.+++++|.+. |+.|.-.+..+-+.. +++.+. . -..+..++.|++.|
T Consensus 13 ~~~~~~~i~~aL~~~-~I~v~~i~~g~s~~s---is~~v~--~---~~~~~av~~Lh~~f 63 (65)
T cd04918 13 SSLILERAFHVLYTK-GVNVQMISQGASKVN---ISLIVN--D---SEAEGCVQALHKSF 63 (65)
T ss_pred CccHHHHHHHHHHHC-CCCEEEEEecCccce---EEEEEe--H---HHHHHHHHHHHHHH
Confidence 578999999999999 999966553332322 223332 1 22345667777665
No 181
>PRK00341 hypothetical protein; Provisional
Probab=26.55 E-value=2e+02 Score=20.96 Aligned_cols=51 Identities=8% Similarity=0.048 Sum_probs=30.8
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEE---EecCeEEEEEEEEEecCC
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVL---PFGNSTVDITVVAQMDVE 218 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is---~~~~~~l~~~i~~q~~~~ 218 (238)
+-++|--.. .+++...|++.++.+ . ++-...++ +-+|+...+++.+.+.+.
T Consensus 18 ~~~KViG~~--~~~~~~~V~~iv~~~-~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~ 71 (91)
T PRK00341 18 YPIKVIGDT--GVGFKDLVIEILQKH-A-DVDLSTLAERQSSNGKYTTVQLHIVATDE 71 (91)
T ss_pred ccEEEEEcC--chhHHHHHHHHHHHh-C-CCcccceeeccCCCCEEEEEEEEEEECCH
Confidence 445555555 789999999999876 4 44333222 224555556777766553
No 182
>PRK06635 aspartate kinase; Reviewed
Probab=26.25 E-value=2.8e+02 Score=25.44 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=31.8
Q ss_pred EeeCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEE
Q 026436 158 RVSDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVL 200 (238)
Q Consensus 158 ~~~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is 200 (238)
...++.+.|.+.. -.+++|.+.+++.+|.+. |+.|...+.+
T Consensus 257 ~~~~~v~~Isv~g-~~~~~g~l~~i~~~L~~~-~I~i~~is~s 297 (404)
T PRK06635 257 AFDKDEAKVTVVG-VPDKPGIAAQIFGALAEA-NINVDMIVQN 297 (404)
T ss_pred EecCCeEEEEECC-CCCCccHHHHHHHHHHHc-CCeEEEEEec
Confidence 4556667788766 335789999999999999 9999876543
No 183
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.53 E-value=2e+02 Score=18.69 Aligned_cols=59 Identities=14% Similarity=0.326 Sum_probs=33.7
Q ss_pred EEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 165 LIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 165 ~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
+|.+.... .+.+|.+.+++++|... ++.+++-. .+-..+++.+.- -..+.+++.|+..|
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i-~i~~i~~~-----~s~~~is~~V~~-----~~~~~a~~~Lh~~f 62 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDI-NVRMICYG-----ASNHNLCFLVKE-----EDKDEVVQRLHSRL 62 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhC-CeEEEEEe-----cCccEEEEEEeH-----HHHHHHHHHHHHHH
Confidence 34555443 23689999999999877 76665533 221223333321 22456666676654
No 184
>PRK06291 aspartate kinase; Provisional
Probab=24.81 E-value=4.9e+02 Score=24.64 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=44.1
Q ss_pred EEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 157 VRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 157 V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
+.+.++-..|.|.... .+.+|.+.+++.+|.+. |+.|+-.+..+-... +++.+.- -..+..++.|+.++
T Consensus 392 i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~-~I~v~~isqgsSe~~---Is~vV~~-----~d~~~av~~Lh~~f 461 (465)
T PRK06291 392 VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGES-GINIKMISQGSSEVN---ISFVVDE-----EDGERAVKVLHDEF 461 (465)
T ss_pred eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHC-CCCEEEEEeccccCe---EEEEEeH-----HHHHHHHHHHHHHh
Confidence 4455666778887665 24789999999999999 999975543332222 2333321 12456677777765
No 185
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=24.77 E-value=2.2e+02 Score=28.96 Aligned_cols=60 Identities=5% Similarity=-0.004 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 026436 176 KGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALRK 236 (238)
Q Consensus 176 ~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~ 236 (238)
+..--+|.++|++. |+.|.++.+....+.-+.+.+......+.+...+++...|..++..
T Consensus 464 ~~~e~~i~~~L~~~-gi~v~~v~~~~~~~g~~~I~l~~~~~~g~~~~~k~i~~~ls~~~g~ 523 (764)
T TIGR02865 464 QLLEEKIIRALNKN-GIPYEDVLAYNTEGGNIDVELTIAACGGRGECEKKIAPIISEVTGE 523 (764)
T ss_pred HHHHHHHHHHHHHC-CCeeEEEEEEEcCCCcEEEEEEEcCCCCccchHHHHHHHHHHHhCC
Confidence 34456799999999 9999999988877665666677776677888888999888887753
No 186
>PRK13669 hypothetical protein; Provisional
Probab=24.24 E-value=2.3e+02 Score=20.26 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=38.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCc--ccCHHHHHHHHHHHHHh
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVES--DVTVKDLVKNLQPALRK 236 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~--~~~~~dL~~~L~~al~~ 236 (238)
|++|-.. .....-.+++.|++-.+++|+.-.-...-+-... ..-|=+++.. .-+.+||.++|...|..
T Consensus 5 VEfC~sN--l~~G~~~~~~~Le~dP~~dVie~gCls~CG~C~~-~~FAlVng~~V~a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 5 VEFCVSN--LASGSQAAFEKLEKDPNLDVLEYGCLGYCGICSE-GLFALVNGEVVEGETPEELVENIYAHLEE 74 (78)
T ss_pred eeehhcc--hhhhHHHHHHHHHhCCCceEEEcchhhhCcCccc-CceEEECCeEeecCCHHHHHHHHHHHHhh
Confidence 4555444 3333455577788887899887653333332211 1112233321 24789999999998854
No 187
>PF14992 TMCO5: TMCO5 family
Probab=23.99 E-value=1.1e+02 Score=27.19 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 026436 91 SILGDSIKYLKQLQERVKALEEQTSKKTVE 120 (238)
Q Consensus 91 ~il~~ai~yi~~L~~~~~~l~~~~~~~~~~ 120 (238)
.+..+++.||+.|++.++.++++++..-.+
T Consensus 144 ~l~eDq~~~i~klkE~L~rmE~ekE~~lLe 173 (280)
T PF14992_consen 144 QLCEDQANEIKKLKEKLRRMEEEKEMLLLE 173 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899999999999999999877654333
No 188
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=23.64 E-value=4.6e+02 Score=22.33 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHhcCC-eeEEEEEEEEecCeEEEEEEEEEecCCcccC-HHHHHHHHHHHHHh
Q 026436 176 KGHLANILSEIENVHH-LSVLSCNVLPFGNSTVDITVVAQMDVESDVT-VKDLVKNLQPALRK 236 (238)
Q Consensus 176 ~g~L~~il~~Le~l~~-L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~-~~dL~~~L~~al~~ 236 (238)
+....++.+++++..| .+|.+..+...|...+.+.++++++.+..+. .+++.+.+++.|.+
T Consensus 204 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~ 266 (284)
T PF01545_consen 204 PELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLRE 266 (284)
T ss_dssp HHHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556788888865434 7999999999998555577888888766453 55777788777754
No 189
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=23.57 E-value=2.4e+02 Score=18.97 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=24.3
Q ss_pred EEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEE
Q 026436 165 LIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNV 199 (238)
Q Consensus 165 ~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~i 199 (238)
.|.+.... .+.+|.+.+++++|.+. ++.|.-.+.
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~-~I~v~~i~~ 37 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARA-GINVILISQ 37 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHC-CCcEEEEEe
Confidence 44554332 22679999999999999 998866554
No 190
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=23.26 E-value=3.4e+02 Score=21.60 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=47.1
Q ss_pred EeeCCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE---ecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 158 RVSDRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP---FGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 158 ~~~~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~---~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.+..++++|-|.... ...-..++++...+. |+.|+..+-.. ... .-++.+.+. ....-..+|+...+-..|
T Consensus 98 ~~~~~Dv~I~iS~SG--~t~~~i~~~~~ak~~-Ga~vI~IT~~~~s~La~-~aD~~l~~~--~~~~~~~~~~~~~~~~~~ 171 (177)
T cd05006 98 LGQPGDVLIGISTSG--NSPNVLKALEAAKER-GMKTIALTGRDGGKLLE-LADIEIHVP--SDDTPRIQEVHLLIGHIL 171 (177)
T ss_pred hCCCCCEEEEEeCCC--CCHHHHHHHHHHHHC-CCEEEEEeCCCCCchhh-hCCEEEEeC--CCChHHHHHHHHHHHHHH
Confidence 356788888888777 567799999999999 98888754221 111 122334443 322334677777777777
Q ss_pred Hhh
Q 026436 235 RKF 237 (238)
Q Consensus 235 ~~~ 237 (238)
+++
T Consensus 172 ~~~ 174 (177)
T cd05006 172 CEL 174 (177)
T ss_pred HHH
Confidence 654
No 191
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=22.98 E-value=1.4e+02 Score=21.50 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=29.8
Q ss_pred CCeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecC
Q 026436 161 DRDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDV 217 (238)
Q Consensus 161 ~~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~ 217 (238)
+.+.++.|.-+. +||.|.+.+++|-.. . +|.--+..-.++..=++.+-+++.+
T Consensus 8 ~~E~~~~v~~PE--~pGal~~F~~~l~~~-~-nITeF~YR~~~~~~a~vlvgi~v~~ 60 (91)
T PF00585_consen 8 GREALFAVEFPE--RPGALKRFLDALGPR-N-NITEFHYRYSGDDFARVLVGIEVPD 60 (91)
T ss_dssp --EEEEEEE--B--STTHCHHHHHCCSSS-E--EEEEEEE-TTTSCSEEEEEEE-SS
T ss_pred CCEEEEEEECCC--CccHHHHHHHHhCCC-c-eEEEEEEcCCCCCeeeEEEEEEeCC
Confidence 467889999999 999999999988665 3 2554454333332222344455544
No 192
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=22.76 E-value=5.2e+02 Score=23.64 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=32.7
Q ss_pred EEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEE
Q 026436 157 VRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNV 199 (238)
Q Consensus 157 V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~i 199 (238)
+....+...|.|.... .+.+|.+.+++.+|.+. ++.|...+.
T Consensus 254 I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~-~I~i~~i~~ 296 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAER-NINVDLISQ 296 (401)
T ss_pred EEEECCEEEEEEecCCCCCCccHHHHHHHHHHHc-CCcEEEEEc
Confidence 4566778888887433 23789999999999999 998876543
No 193
>PRK09084 aspartate kinase III; Validated
Probab=22.36 E-value=6.5e+02 Score=23.72 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=31.8
Q ss_pred EeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 158 RVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 158 ~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
....+.++|.|.+.. .+.+|.+.+|+.+|.+. |+.|.-.+
T Consensus 301 t~~~~i~lItv~~~~~~~~~g~~a~if~~l~~~-~I~Vd~I~ 341 (448)
T PRK09084 301 ALRRNQTLLTLHSLNMLHARGFLAEVFGILARH-KISVDLIT 341 (448)
T ss_pred EeeCCEEEEEEecCCCCccccHHHHHHHHHHHc-CCeEEEEe
Confidence 456777888888654 23679999999999999 99887765
No 194
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=22.31 E-value=3.6e+02 Score=25.80 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=37.3
Q ss_pred CcHHHHHHHHHHhcCCeeEEEEEEEEe--cC---eEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 176 KGHLANILSEIENVHHLSVLSCNVLPF--GN---STVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 176 ~g~L~~il~~Le~l~~L~V~~a~is~~--~~---~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.|.|.++|..+++. ++.+.+-..... .. .-+.++|.+.+.. ..+.++++.|++
T Consensus 49 ~g~L~~~l~~f~~~-~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~ 106 (457)
T TIGR01269 49 ISSLHRILKYIETF-KLNLVHFETRPTRTLSNADVDYSCLITLEANE---INMSLLIESLRG 106 (457)
T ss_pred chhHHHHHHHHHHc-CCcEEEeecCCccccCCCCCceEEEEEEeccH---hhHHHHHHHHHh
Confidence 78899999999999 999998875442 11 2355566665443 446677777765
No 195
>PRK00907 hypothetical protein; Provisional
Probab=21.05 E-value=3.3e+02 Score=19.98 Aligned_cols=51 Identities=6% Similarity=0.053 Sum_probs=30.8
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCe----eEEEEEEEEecCeEEEEEEEEEecC
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHL----SVLSCNVLPFGNSTVDITVVAQMDV 217 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L----~V~~a~is~~~~~~l~~~i~~q~~~ 217 (238)
++-|+|--.. ++++...|++.++.+ .= .-+...-|. +|+...+++.+.+.+
T Consensus 17 ~fpiKVmG~a--~~~l~~~V~~vv~~h-~p~~~~~~i~~r~Ss-~GkY~Svtv~i~ats 71 (92)
T PRK00907 17 TFELSAMGTA--ERGLETELPRLLAAT-GVELLQERISWKHSS-SGKYVSVRIGFRAES 71 (92)
T ss_pred CCeEEEEEcC--chhHHHHHHHHHHHh-CCCCCcCcEEeccCC-CCEEEEEEEEEEECC
Confidence 3555666566 789999999999976 43 233333344 444444556555444
No 196
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=20.85 E-value=5.9e+02 Score=23.73 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=30.9
Q ss_pred EEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 157 VRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 157 V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
+.+..+...|.+.... .+.+|.+.+++++|.+. |+.|....
T Consensus 372 I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~-~Inv~~i~ 413 (441)
T TIGR00657 372 VEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQN-GINIEMIS 413 (441)
T ss_pred EEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHC-CCCEEEEE
Confidence 4455666677776543 23689999999999999 99887765
No 197
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.67 E-value=6.7e+02 Score=23.11 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhh
Q 026436 101 KQLQERVKALEEQTS 115 (238)
Q Consensus 101 ~~L~~~~~~l~~~~~ 115 (238)
++|...++.|+.++.
T Consensus 249 ~kL~~~~etLEqq~~ 263 (365)
T KOG2391|consen 249 QKLVAMKETLEQQLQ 263 (365)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555443
No 198
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.51 E-value=1.4e+02 Score=16.24 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 026436 100 LKQLQERVKALEEQTS 115 (238)
Q Consensus 100 i~~L~~~~~~l~~~~~ 115 (238)
|..|+.++..|+.++.
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567778888887654
No 199
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=20.51 E-value=1.8e+02 Score=29.35 Aligned_cols=59 Identities=12% Similarity=0.227 Sum_probs=41.1
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
..++|-... ++|+|..|+.+|. +|.-+.++|+|..+++.+. .. .+ ..-..+...|..+|
T Consensus 632 ~~~e~r~~d--r~g~l~~~~~~l~-----~~~~~~~~~~g~~~~~~~~-~~--~~--~~r~~~~~~~~~~~ 690 (693)
T PRK00227 632 NILEVRTED--RRGALGALLGVLP-----DLLWITASTPGATMIVQAA-LK--PG--FDRATVERDVTRVL 690 (693)
T ss_pred cEEEEEeCc--cccHHHHHHHHhh-----hhhhHhhcCCCcceEEEEE-ec--Cc--ccHHHHHHHHHHHH
Confidence 567888888 9999999999998 5678889999987765322 22 22 23344555555554
No 200
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=20.33 E-value=4.6e+02 Score=24.76 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCeeEEEEEEEEecCeE--EEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 026436 179 LANILSEIENVHHLSVLSCNVLPFGNST--VDITVVAQMDVESDVTVKDLVKNLQPALRKF 237 (238)
Q Consensus 179 L~~il~~Le~l~~L~V~~a~is~~~~~~--l~~~i~~q~~~~~~~~~~dL~~~L~~al~~~ 237 (238)
.-+.++++|...|+++-++.++--|.++ .++.-.+.+.+...++.+|+...|+.|...+
T Consensus 59 I~~av~~AE~mag~~i~~v~vs~sG~~i~s~~~~g~v~i~~~~eIt~~DI~rvl~~A~~~~ 119 (418)
T COG0849 59 IKKAVEAAERMAGCEIKSVIVSLSGNHIKSQNVNGEVSISEEKEITQEDIERVLEAAKAVA 119 (418)
T ss_pred HHHHHHHHHHhcCCCcceEEEEeccceeEEEeeEEEEEcCCCCccCHHHHHHHHHHHHhhc
Confidence 4566777887779999988877777554 3334455566667899999999999988654
No 201
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=20.27 E-value=1.5e+02 Score=18.78 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhcCCCC
Q 026436 57 QDHVIAERKRREKLNQRFIALSALVPGL 84 (238)
Q Consensus 57 ~~h~~~Er~RR~~i~~~~~~L~~lvP~~ 84 (238)
....+.|=.||.+++..|..-..++|..
T Consensus 10 M~~ai~eT~rRR~~Q~~yN~~h~ItP~t 37 (44)
T PF12344_consen 10 MQKAIDETNRRREIQIAYNKEHGITPKT 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4456778889999999999999999975
Done!