Query 026436
Match_columns 238
No_of_seqs 205 out of 1350
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 2.5E-17 8.5E-22 118.8 7.4 64 54-117 5-69 (82)
2 4h10_B Circadian locomoter out 99.6 4E-16 1.4E-20 108.8 5.8 59 53-111 6-65 (71)
3 1hlo_A Protein (transcription 99.6 8.8E-16 3E-20 110.2 7.1 63 54-116 11-75 (80)
4 1an4_A Protein (upstream stimu 99.6 1.6E-16 5.5E-21 109.6 3.1 55 53-107 3-63 (65)
5 1nkp_B MAX protein, MYC proto- 99.6 1.3E-15 4.3E-20 110.1 7.6 63 55-117 2-66 (83)
6 4ati_A MITF, microphthalmia-as 99.6 1.8E-15 6.3E-20 116.1 7.9 62 53-114 25-90 (118)
7 1a0a_A BHLH, protein (phosphat 99.6 1.4E-16 4.8E-21 109.1 1.2 53 55-107 2-61 (63)
8 1nkp_A C-MYC, MYC proto-oncoge 99.6 2.2E-15 7.4E-20 109.9 7.2 62 55-116 6-70 (88)
9 1nlw_A MAD protein, MAX dimeri 99.6 1.1E-14 3.6E-19 104.4 8.4 62 56-117 2-66 (80)
10 4h10_A ARYL hydrocarbon recept 99.5 3E-15 1E-19 105.2 2.9 53 53-105 7-63 (73)
11 3u5v_A Protein MAX, transcript 99.5 1E-14 3.5E-19 103.3 3.8 59 54-112 4-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.3 2E-12 7E-17 89.5 5.5 55 53-107 10-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 3.4E-12 1.1E-16 86.3 6.2 54 55-108 2-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 3.1E-10 1E-14 102.1 5.8 55 52-106 9-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 1.3E-09 4.4E-14 99.1 5.3 54 53-106 11-68 (387)
16 2lfh_A DNA-binding protein inh 98.8 1E-09 3.6E-14 75.1 2.1 45 61-105 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.8 1.2E-08 4.1E-13 72.5 6.7 48 67-114 4-55 (83)
18 4aya_A DNA-binding protein inh 98.3 1.1E-06 3.8E-11 64.3 6.3 47 63-109 33-82 (97)
19 1zpv_A ACT domain protein; str 97.1 0.011 3.6E-07 41.7 11.6 67 163-235 5-71 (91)
20 1u8s_A Glycine cleavage system 96.4 0.025 8.5E-07 45.7 10.1 66 163-235 6-71 (192)
21 2nyi_A Unknown protein; protei 96.1 0.034 1.2E-06 45.2 9.7 50 163-216 5-54 (195)
22 2ko1_A CTR148A, GTP pyrophosph 95.9 0.041 1.4E-06 38.0 8.0 51 163-217 5-55 (88)
23 2nyi_A Unknown protein; protei 95.6 0.081 2.8E-06 42.9 9.8 70 162-237 92-166 (195)
24 1u8s_A Glycine cleavage system 95.1 0.16 5.6E-06 40.7 10.0 71 162-237 92-169 (192)
25 1y7p_A Hypothetical protein AF 91.3 0.68 2.3E-05 38.5 7.6 62 163-232 4-69 (223)
26 3p96_A Phosphoserine phosphata 90.9 0.94 3.2E-05 40.4 8.9 67 162-233 11-77 (415)
27 2f1f_A Acetolactate synthase i 90.7 1.4 4.8E-05 34.9 8.7 48 164-214 4-52 (164)
28 3n0v_A Formyltetrahydrofolate 90.6 1.8 6.1E-05 37.3 10.1 65 163-233 8-74 (286)
29 3obi_A Formyltetrahydrofolate 90.2 3.4 0.00012 35.5 11.5 67 162-233 5-73 (288)
30 3o1l_A Formyltetrahydrofolate 90.0 2.9 0.0001 36.2 11.0 66 163-233 22-89 (302)
31 2jhe_A Transcription regulator 89.3 0.99 3.4E-05 34.8 6.8 35 165-202 2-36 (190)
32 3lou_A Formyltetrahydrofolate 88.8 3.8 0.00013 35.3 10.7 68 162-233 9-79 (292)
33 2pc6_A Probable acetolactate s 88.4 2.6 8.9E-05 33.3 8.7 48 164-214 5-53 (165)
34 2fgc_A Acetolactate synthase, 87.2 3.8 0.00013 33.2 9.1 48 164-214 30-78 (193)
35 3nrb_A Formyltetrahydrofolate 81.0 12 0.00041 32.0 10.1 64 162-232 6-71 (287)
36 3luy_A Probable chorismate mut 80.7 16 0.00056 31.9 11.0 50 168-218 211-260 (329)
37 2qmw_A PDT, prephenate dehydra 72.2 10 0.00036 32.1 7.1 51 163-216 186-239 (267)
38 2qmx_A Prephenate dehydratase; 69.0 15 0.00051 31.4 7.4 51 164-217 201-251 (283)
39 2f06_A Conserved hypothetical 64.0 37 0.0013 25.1 8.2 56 166-232 75-130 (144)
40 3mwb_A Prephenate dehydratase; 62.9 17 0.00057 31.6 6.6 52 164-217 202-253 (313)
41 2lqj_A Mg2+ transport protein; 61.2 15 0.00052 26.0 5.1 65 163-230 8-74 (94)
42 2wt7_A Proto-oncogene protein 60.7 25 0.00084 22.8 5.7 41 63-116 1-41 (63)
43 2re1_A Aspartokinase, alpha an 54.4 33 0.0011 26.3 6.5 39 157-198 19-58 (167)
44 2re1_A Aspartokinase, alpha an 51.5 78 0.0027 24.1 9.0 41 157-198 97-138 (167)
45 2f06_A Conserved hypothetical 49.4 69 0.0024 23.5 7.5 37 165-204 8-44 (144)
46 1phz_A Protein (phenylalanine 47.8 17 0.00057 33.1 4.2 51 163-216 34-84 (429)
47 2dtj_A Aspartokinase; protein- 47.7 94 0.0032 24.0 8.8 68 156-234 88-156 (178)
48 3he4_B Synzip5; heterodimeric 45.2 32 0.0011 20.3 3.7 23 93-115 5-27 (46)
49 3fx7_A Putative uncharacterize 41.2 64 0.0022 22.9 5.6 22 93-114 65-86 (94)
50 1xkm_B Distinctin chain B; por 40.5 37 0.0013 17.7 3.1 18 91-108 4-21 (26)
51 3s1t_A Aspartokinase; ACT doma 40.3 1.3E+02 0.0044 23.4 8.3 68 156-234 89-157 (181)
52 2jee_A YIIU; FTSZ, septum, coi 39.0 34 0.0012 23.7 3.7 24 93-116 15-38 (81)
53 2dtj_A Aspartokinase; protein- 37.7 1.2E+02 0.0041 23.3 7.5 38 157-197 9-47 (178)
54 4go7_X Aspartokinase; transfer 37.6 1.4E+02 0.0049 23.8 8.0 55 157-214 29-86 (200)
55 2er8_A Regulatory protein Leu3 37.4 26 0.00087 22.8 2.9 19 98-116 49-67 (72)
56 3muj_A Transcription factor CO 36.4 54 0.0018 25.0 4.8 35 69-103 95-133 (138)
57 1dh3_A Transcription factor CR 32.9 37 0.0013 21.5 2.9 19 98-116 22-40 (55)
58 1zme_C Proline utilization tra 32.1 36 0.0012 21.8 2.9 19 98-116 44-62 (70)
59 3mgj_A Uncharacterized protein 31.7 91 0.0031 23.0 5.3 55 175-232 14-70 (118)
60 2dt9_A Aspartokinase; protein- 31.3 1.7E+02 0.0058 22.1 7.9 68 156-234 88-156 (167)
61 3c1m_A Probable aspartokinase; 31.1 1.2E+02 0.004 27.5 7.2 70 156-234 397-467 (473)
62 1gd2_E Transcription factor PA 29.8 38 0.0013 22.7 2.7 18 98-115 29-46 (70)
63 2jqq_A Conserved oligomeric go 29.5 29 0.00099 28.0 2.4 45 67-112 53-97 (204)
64 3ab4_A Aspartokinase; aspartat 28.2 2.3E+02 0.0077 25.1 8.5 67 157-234 338-405 (421)
65 2oqq_A Transcription factor HY 27.0 56 0.0019 19.6 2.7 18 98-115 3-20 (42)
66 3mah_A Aspartokinase; aspartat 25.9 97 0.0033 23.3 4.9 41 157-198 12-53 (157)
67 1pd7_B MAD1; PAH2, SIN3, eukar 25.6 85 0.0029 16.8 3.4 19 87-105 2-20 (26)
68 1uii_A Geminin; human, DNA rep 25.6 1.5E+02 0.005 20.5 5.1 23 93-115 41-63 (83)
69 2l5g_A GPS2 protein, G protein 25.3 1.1E+02 0.0037 17.9 4.1 29 87-115 4-32 (38)
70 2dt9_A Aspartokinase; protein- 23.8 94 0.0032 23.6 4.5 39 157-198 10-49 (167)
71 3tvi_A Aspartokinase; structur 23.6 3E+02 0.01 24.7 8.4 69 157-234 368-437 (446)
72 1p3q_Q VPS9P, vacuolar protein 23.3 73 0.0025 20.2 3.0 26 61-86 3-28 (54)
73 3s1t_A Aspartokinase; ACT doma 23.3 2.6E+02 0.0088 21.6 8.4 38 158-198 11-49 (181)
74 2rrl_A FLIK, flagellar HOOK-le 22.6 2.3E+02 0.008 22.1 6.5 50 151-201 99-152 (169)
75 1hwt_C Protein (heme activator 21.5 41 0.0014 22.2 1.7 19 97-115 57-75 (81)
76 3ab4_A Aspartokinase; aspartat 21.0 3.3E+02 0.011 23.9 8.1 39 157-198 258-297 (421)
77 3m05_A Uncharacterized protein 21.0 2.4E+02 0.0084 20.4 6.3 54 175-234 14-69 (114)
78 4hti_A Receptor-type tyrosine- 20.2 1.5E+02 0.0051 21.1 4.5 72 156-231 2-75 (99)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.70 E-value=2.5e-17 Score=118.81 Aligned_cols=64 Identities=27% Similarity=0.454 Sum_probs=59.4
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026436 54 SHAQDHVIAERKRREKLNQRFIALSALVPGL-KKTDKASILGDSIKYLKQLQERVKALEEQTSKK 117 (238)
Q Consensus 54 ~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~-~k~~k~~il~~ai~yi~~L~~~~~~l~~~~~~~ 117 (238)
.++..|+.+||+||++||+.|..|+++||++ .|+||++||.+||+||++|+.+++.|++++...
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L 69 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999997 899999999999999999999999999977643
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=108.79 Aligned_cols=59 Identities=31% Similarity=0.504 Sum_probs=53.5
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSALVPGL-KKTDKASILGDSIKYLKQLQERVKALE 111 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~-~k~~k~~il~~ai~yi~~L~~~~~~l~ 111 (238)
.+++.+|+.+||+||++||+.|.+|++|||+. .|+||++||..||+||++|+.++.=|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45678999999999999999999999999975 699999999999999999999876553
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.61 E-value=8.8e-16 Score=110.17 Aligned_cols=63 Identities=25% Similarity=0.500 Sum_probs=58.7
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026436 54 SHAQDHVIAERKRREKLNQRFIALSALVPGL--KKTDKASILGDSIKYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 54 ~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~--~k~~k~~il~~ai~yi~~L~~~~~~l~~~~~~ 116 (238)
.++..|+.+||+||.+||+.|..|+++||.. .|++|++||..||+||++|++++++|+.+++.
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999976 68999999999999999999999999997764
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.61 E-value=1.6e-16 Score=109.61 Aligned_cols=55 Identities=27% Similarity=0.520 Sum_probs=50.1
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhcCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSALVPGLK------KTDKASILGDSIKYLKQLQERV 107 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~~------k~~k~~il~~ai~yi~~L~~~~ 107 (238)
..++..|+.+||+||++||+.|..|++|||.+. |++|++||.+||+||++|+++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 346778999999999999999999999999874 6899999999999999999765
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.61 E-value=1.3e-15 Score=110.10 Aligned_cols=63 Identities=25% Similarity=0.487 Sum_probs=57.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026436 55 HAQDHVIAERKRREKLNQRFIALSALVPGL--KKTDKASILGDSIKYLKQLQERVKALEEQTSKK 117 (238)
Q Consensus 55 ~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~--~k~~k~~il~~ai~yi~~L~~~~~~l~~~~~~~ 117 (238)
++..|+.+||+||++||+.|..|+++||.. .|++|++||..||+||++|+.+++.|+.++...
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999974 899999999999999999999999999876643
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.60 E-value=1.8e-15 Score=116.11 Aligned_cols=62 Identities=27% Similarity=0.516 Sum_probs=52.2
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhcCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSALVPGLK----KTDKASILGDSIKYLKQLQERVKALEEQT 114 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~~----k~~k~~il~~ai~yi~~L~~~~~~l~~~~ 114 (238)
..++..|+.+||+||++||++|..|++|||++. |++|++||.+||+||++|+.+++.|++..
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778999999999999999999999999873 67899999999999999999999998753
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.59 E-value=1.4e-16 Score=109.10 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=48.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcCCCC-------CCCChhhHHHHHHHHHHHHHHHH
Q 026436 55 HAQDHVIAERKRREKLNQRFIALSALVPGL-------KKTDKASILGDSIKYLKQLQERV 107 (238)
Q Consensus 55 ~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~-------~k~~k~~il~~ai~yi~~L~~~~ 107 (238)
++.+|+.+||+||++||..|..|++|||++ .+.+|++||+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999954 56679999999999999999765
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=2.2e-15 Score=109.91 Aligned_cols=62 Identities=29% Similarity=0.480 Sum_probs=56.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026436 55 HAQDHVIAERKRREKLNQRFIALSALVPGL---KKTDKASILGDSIKYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 55 ~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~---~k~~k~~il~~ai~yi~~L~~~~~~l~~~~~~ 116 (238)
++..|+..||+||.+||+.|..|+++||.. .|.+|++||.+||+||++|+.+.+.+..++..
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999975 69999999999999999999999998876543
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=1.1e-14 Score=104.35 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=56.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026436 56 AQDHVIAERKRREKLNQRFIALSALVPGL---KKTDKASILGDSIKYLKQLQERVKALEEQTSKK 117 (238)
Q Consensus 56 ~~~h~~~Er~RR~~i~~~~~~L~~lvP~~---~k~~k~~il~~ai~yi~~L~~~~~~l~~~~~~~ 117 (238)
+..||..||+||..||+.|..|+++||.. .|.+|++||.+|++||+.|+++.+.|..+++..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999965 688999999999999999999999999876543
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.52 E-value=3e-15 Score=105.24 Aligned_cols=53 Identities=30% Similarity=0.481 Sum_probs=48.7
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHHH
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSALVPGL----KKTDKASILGDSIKYLKQLQE 105 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~----~k~~k~~il~~ai~yi~~L~~ 105 (238)
..++.+|+.+||+||++||+.|.+|++|||.+ .|+||++||+.||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999975 799999999999999999874
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.50 E-value=1e-14 Score=103.33 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=49.2
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhhcCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHHH
Q 026436 54 SHAQDHVIAERKRREKLNQRFIALSALVPG---LKKT-DKASILGDSIKYLKQLQERVKALEE 112 (238)
Q Consensus 54 ~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~---~~k~-~k~~il~~ai~yi~~L~~~~~~l~~ 112 (238)
.++..||..||+||.+||+.|..|+.+||. ..|. +|+.||..||+||+.|++++++++.
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999995 3455 7999999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.31 E-value=2e-12 Score=89.49 Aligned_cols=55 Identities=25% Similarity=0.429 Sum_probs=50.0
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhcCCCC--CCCChhhHHHHHHHHHHHHHHHH
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSALVPGL--KKTDKASILGDSIKYLKQLQERV 107 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~--~k~~k~~il~~ai~yi~~L~~~~ 107 (238)
...+..||..||+|+..||+.|..||.+||.. .|.+|..||..||+||.+|++.+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999974 78999999999999999999754
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.31 E-value=3.4e-12 Score=86.32 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=49.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 026436 55 HAQDHVIAERKRREKLNQRFIALSALVPGL---KKTDKASILGDSIKYLKQLQERVK 108 (238)
Q Consensus 55 ~~~~h~~~Er~RR~~i~~~~~~L~~lvP~~---~k~~k~~il~~ai~yi~~L~~~~~ 108 (238)
++..||..||+|+..||+.|..||.+||.. .|.+|..+|..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 466799999999999999999999999965 689999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.00 E-value=3.1e-10 Score=102.09 Aligned_cols=55 Identities=29% Similarity=0.534 Sum_probs=42.4
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHhhcCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 026436 52 DPSHAQDHVIAERKRREKLNQRFIALSALVP-GLKKTDKASILGDSIKYLKQLQER 106 (238)
Q Consensus 52 ~~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP-~~~k~~k~~il~~ai~yi~~L~~~ 106 (238)
...++.+|+.+||+||++||..|.+|++||| +..|+||++||..||.||+.|+..
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3456778999999999999999999999999 458999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=1.3e-09 Score=99.07 Aligned_cols=54 Identities=30% Similarity=0.450 Sum_probs=49.6
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhcCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 026436 53 PSHAQDHVIAERKRREKLNQRFIALSALVP----GLKKTDKASILGDSIKYLKQLQER 106 (238)
Q Consensus 53 ~~~~~~h~~~Er~RR~~i~~~~~~L~~lvP----~~~k~~k~~il~~ai~yi~~L~~~ 106 (238)
..++.+|+.+||+||++||..|.+|+.||| ...|+||++||..||.|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 456889999999999999999999999999 568999999999999999998843
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.82 E-value=1e-09 Score=75.06 Aligned_cols=45 Identities=27% Similarity=0.416 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHH
Q 026436 61 IAERKRREKLNQRFIALSALVPGL---KKTDKASILGDSIKYLKQLQE 105 (238)
Q Consensus 61 ~~Er~RR~~i~~~~~~L~~lvP~~---~k~~k~~il~~ai~yi~~L~~ 105 (238)
..||+|+..||+.|..||.+||.. .|.+|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 448999999999999999999965 789999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.79 E-value=1.2e-08 Score=72.51 Aligned_cols=48 Identities=27% Similarity=0.484 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026436 67 REKLNQRFIALSALVPGL----KKTDKASILGDSIKYLKQLQERVKALEEQT 114 (238)
Q Consensus 67 R~~i~~~~~~L~~lvP~~----~k~~k~~il~~ai~yi~~L~~~~~~l~~~~ 114 (238)
|.+||++|.+|..|||.+ .+.+|++||..|++||++||+.++.+.++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999975 578999999999999999999988887643
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.32 E-value=1.1e-06 Score=64.30 Aligned_cols=47 Identities=30% Similarity=0.418 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHH
Q 026436 63 ERKRREKLNQRFIALSALVPGL---KKTDKASILGDSIKYLKQLQERVKA 109 (238)
Q Consensus 63 Er~RR~~i~~~~~~L~~lvP~~---~k~~k~~il~~ai~yi~~L~~~~~~ 109 (238)
||.|-..||+.|..||.+||.. .|.+|..+|.-||+||..|++-++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5788889999999999999964 6899999999999999999987654
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.12 E-value=0.011 Score=41.72 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=53.0
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
.+.|.|.|.. ++|++.+|..+|-+. |.+|.+.+..+..+.+ .+.+.+.+.+ ....++|.+.|...-.
T Consensus 5 ~~~l~v~~~D--rpGila~vt~~la~~-~~NI~~i~~~~~~~~~-~~~i~v~~~~--~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 5 KAIITVVGKD--KSGIVAGVSGKIAEL-GLNIDDISQTVLDEYF-TMMAVVSSDE--KQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEESC--CTTHHHHHHHHHHHT-TCEEEEEEEEEETTEE-EEEEEEEESS--CCCHHHHHHHHHHHHH
T ss_pred eEEEEEEECC--CCCHHHHHHHHHHHc-CCCEEEEEeEEEcCEE-EEEEEEEeCC--CCCHHHHHHHHHHHHH
Confidence 4678899999 999999999999999 9999999987776543 3556666655 3467788888876543
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.40 E-value=0.025 Score=45.67 Aligned_cols=66 Identities=8% Similarity=0.147 Sum_probs=50.2
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPALR 235 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~ 235 (238)
.+.|.|.|+. ++|++..|..+|.+. |++|+.+++.+..+.++ ..+.+.... ...++|.+.|...+.
T Consensus 6 ~~~itv~~~D--rpGiva~vt~~La~~-g~NI~d~~~~~~~~~f~-~~~~v~~~~---~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTD--RPGICNEVVRLVTQA-GCNIIDSRIAMFGKEFT-LLMLISGSP---SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEEC--CTTHHHHHHHHHHHT-TCEEEEEEEEEETTEEE-EEEEEEECH---HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCC--CCcHHHHHHHHHHHC-CCCEEeeeeeecCCceE-EEEEEecCC---CCHHHHHHHHHHHHH
Confidence 4778999999 999999999999999 99999999888777654 355555432 245566666665543
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.14 E-value=0.034 Score=45.18 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=41.8
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEec
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMD 216 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~ 216 (238)
.+.|.|.|+. ++|++..|..+|.++ |++|+.+.+.+..+.++ ..+.+...
T Consensus 5 ~~~ltv~~~D--rpGiva~vs~~La~~-g~NI~da~q~~~~~~f~-m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSD--RVGIVHDFSWALKNI-SANVESSRMACLGGDFA-MIVLVSLN 54 (195)
T ss_dssp EEEEEEEEEC--CTTHHHHHHHHHHHT-TCEEEEEEEEEETTEEE-EEEEEEES
T ss_pred EEEEEEEeCC--CCcHHHHHHHHHHHC-CCCEEEEEeEEECCeEE-EEEEEEec
Confidence 4678999999 999999999999999 99999999988777654 34555544
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.92 E-value=0.041 Score=38.03 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=40.7
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecC
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDV 217 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~ 217 (238)
.+.|.|.+.+ ++|+|.+|..+|.+. |+.|.+..+...++ ...+.+.+.+.+
T Consensus 5 ~~~l~v~~~D--r~G~L~~I~~~la~~-~inI~~i~~~~~~~-~~~~~i~v~~~~ 55 (88)
T 2ko1_A 5 LAGIRIVGED--KNGMTNQITGVISKF-DTNIRTIVLNAKDG-IFTCNLMIFVKN 55 (88)
T ss_dssp EEEEEEEEEC--CTTHHHHHHHHHTTS-SSCEEEEEEEECSS-EEEEEEEEEESS
T ss_pred EEEEEEEEEC--CCcHHHHHHHHHHHC-CCCeEEEEEEEcCC-EEEEEEEEEECC
Confidence 4567888888 999999999999999 99999999877666 444455555543
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.62 E-value=0.081 Score=42.91 Aligned_cols=70 Identities=7% Similarity=0.151 Sum_probs=51.3
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec-----CeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG-----NSTVDITVVAQMDVESDVTVKDLVKNLQPALRK 236 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~-----~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al~~ 236 (238)
..+.|.|.|+. ++|++..|-..|-++ |++|..+...+.+ ..+|.+.+.+.... ... ++|.+.|......
T Consensus 92 ~~~iltv~g~D--rpGiva~Vt~~La~~-g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--~~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 92 REYELYVEGPD--SEGIVEAVTAVLAKK-GANIVELETETLPAPFAGFTLFRMGSRVAFPF--PLY-QEVVTALSRVEEE 165 (195)
T ss_dssp EEEEEEEEEEC--CTTHHHHHHHHHHHT-TCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--GGH-HHHHHHHHHHHHH
T ss_pred cEEEEEEEeCC--CcCHHHHHHHHHHHc-CCCEEEceeeecccccCCCCeEEEEEEEEcCC--Ccc-HHHHHHHHHHHHH
Confidence 35789999999 999999999999999 9999999988876 22333444444432 334 6777777765544
Q ss_pred h
Q 026436 237 F 237 (238)
Q Consensus 237 ~ 237 (238)
|
T Consensus 166 l 166 (195)
T 2nyi_A 166 F 166 (195)
T ss_dssp H
T ss_pred c
Confidence 3
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.13 E-value=0.16 Score=40.71 Aligned_cols=71 Identities=11% Similarity=0.197 Sum_probs=52.0
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec-------CeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG-------NSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~-------~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
....|.|.|+. ++|++..|.+.|.+. |++|..+...+.+ ...|...+.+... .....++|.+.|....
T Consensus 92 ~~~~l~v~~~D--~~Gil~~v~~~l~~~-~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~ 166 (192)
T 1u8s_A 92 YTVEVYVESDD--KLGLTEKFTQFFAQR-QIGMASLSAQTISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALC 166 (192)
T ss_dssp EEEEEEEEESC--CTTHHHHHHHHHHHT-TCCEEEEEEEEEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHH
T ss_pred ceEEEEEEeCC--CccHHHHHHHHHHHc-CCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHH
Confidence 34678899999 999999999999999 9999999988765 2233344444443 2456778888887665
Q ss_pred Hhh
Q 026436 235 RKF 237 (238)
Q Consensus 235 ~~~ 237 (238)
..|
T Consensus 167 ~~~ 169 (192)
T 1u8s_A 167 TAL 169 (192)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 25
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=91.33 E-value=0.68 Score=38.47 Aligned_cols=62 Identities=10% Similarity=0.136 Sum_probs=43.9
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEec----CeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFG----NSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~----~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
.+.|.|.+.+ ++|+|.+|+.+|-+. +.+|.+.+..... +..- ++..++.+. ..++|.+.|++
T Consensus 4 ~VtL~I~a~D--RpGLLsDIt~vLAe~-kiNIltIn~~~~~kG~~ng~A--~I~IEV~d~---~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAEN--KIGVLRDLTTIIAEE-GGNITFAQTFLIKHGEHEGKA--LIYFEIEGG---DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEEC--CTTHHHHHHHHCC-----CEEEEEEEECCSSTTTTEE--EEEEEECSS---CHHHHHHHHHT
T ss_pred eEEEEEEEcC--CCCHHHHHHHHHHHc-CCCceEEEEEccccCCcCCEE--EEEEEECCC---CHHHHHHHHhC
Confidence 4677888888 999999999999999 9999999987754 3333 233666654 77788877763
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=90.93 E-value=0.94 Score=40.41 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=50.7
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPA 233 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~a 233 (238)
..+.|.+.|+. ++|+...|...|-++ |.+|+..+-...++.++ ..+.+.+... ..+.++|.+.|...
T Consensus 11 ~~~~lt~~g~D--r~Giv~~vs~~l~~~-~~nI~d~~q~~~~~~f~-~~~~~~~~~~-~~~~~~l~~~l~~~ 77 (415)
T 3p96_A 11 VSVLITVTGVD--QPGVTATLFEVLSRH-GVELLNVEQVVIRHRLT-LGVLVCCPAD-VADGPALRHDVEAA 77 (415)
T ss_dssp EEEEEEEEEEC--CTTHHHHHHHHHTTT-TCEEEEEEEEEETTEEE-EEEEEEECHH-HHTSHHHHHHHHHH
T ss_pred CeEEEEEEcCC--CCCHHHHHHHHHHHC-CCCEEEeeeEEECCEeE-EEEEEEecCC-cCCHHHHHHHHHHH
Confidence 35789999999 999999999999999 99999999888887654 3455555432 22446677766544
No 27
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=90.73 E-value=1.4 Score=34.86 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=37.8
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC-eEEEEEEEEE
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN-STVDITVVAQ 214 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~-~~l~~~i~~q 214 (238)
..|.|...+ ++|.|.+|...|... |++|.+.++....+ ....++|.+.
T Consensus 4 ~~IsV~v~N--rpGvLarIt~lfs~r-g~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 4 RILSVLLEN--ESGALSRVIGLFSQR-GYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp EEEEEEEEC--CTTHHHHHHHHHHTT-TCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred EEEEEEEeC--CCcHHHHHHHHHHHC-CCCeeeceeeecCCCCEEEEEEEEe
Confidence 356777778 999999999999999 99999998876553 4444566665
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=90.64 E-value=1.8 Score=37.28 Aligned_cols=65 Identities=11% Similarity=0.068 Sum_probs=48.1
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE--ecCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP--FGNSTVDITVVAQMDVESDVTVKDLVKNLQPA 233 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~--~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~a 233 (238)
.+.|.+.|++ ++|+...|-..|-+. |++|+..+-.+ ..+.++ ..+.+...+ ..+.++|.+.+...
T Consensus 8 ~~vLtv~c~D--rpGIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~--~~~~~~L~~~f~~l 74 (286)
T 3n0v_A 8 TWILTADCPS--MLGTVDVVTRYLFEQ-RCYVTEHHSFDDRQSGRFF-IRVEFRQPD--DFDEAGFRAGLAER 74 (286)
T ss_dssp CEEEEEEEEC--CTTHHHHHHHHHHHT-TCEEEEEEEEEETTTTEEE-EEEEEECCS--SCCHHHHHHHHHHH
T ss_pred cEEEEEEeCC--CCCHHHHHHHHHHHC-CCCeeeeeeeccCCCCeeE-EEEEEecCC--CCCHHHHHHHHHHH
Confidence 4778999999 999999999999999 99999988663 234332 334444433 46777787777644
No 29
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=90.21 E-value=3.4 Score=35.54 Aligned_cols=67 Identities=9% Similarity=0.160 Sum_probs=48.8
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE--ecCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP--FGNSTVDITVVAQMDVESDVTVKDLVKNLQPA 233 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~--~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~a 233 (238)
..+.|.+.|++ ++|+...|-..|-+. |++|+..+-.+ ..+.++ ..+.+.+.+. ..+.++|.+.+...
T Consensus 5 ~~~iLtv~g~D--rpGIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~~-~~~~~~L~~~f~~l 73 (288)
T 3obi_A 5 HQYVLTLSCPD--RAGIVSAVSTFLFEN-GQNILDAQQYNDTESGHFF-MRVVFNAAAK-VIPLASLRTGFGVI 73 (288)
T ss_dssp CEEEEEEEEEC--CTTHHHHHHHHHHHT-TEEEEEEEEEEETTTTEEE-EEEEEEESSC-CCCHHHHHHHHHHH
T ss_pred CeEEEEEECCC--CCCHHHHHHHHHHHC-CCcEEeeeeeecCCCCceE-EEEEEEcCCC-CCCHHHHHHHHHHH
Confidence 45789999999 999999999999999 99999988642 233332 3444555443 36677777777644
No 30
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=90.02 E-value=2.9 Score=36.24 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=47.8
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe--cCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF--GNSTVDITVVAQMDVESDVTVKDLVKNLQPA 233 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~--~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~a 233 (238)
.+.|.+.|++ ++|+...|-..|-+. |++|+.++-... .+.++ ..+.+...+. ..+.++|.+.+...
T Consensus 22 ~~iLtv~c~D--rpGIVa~VS~~La~~-g~NI~d~~q~~d~~~g~Ff-Mr~~~~~~~~-~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 22 TFRLVIACPD--RVGIVAKVSNFLASH-NGWITEASHHSDNLSGWFF-MRHEIRADTL-PFDLDGFREAFTPI 89 (302)
T ss_dssp EEEEEEEEEC--CTTHHHHHHHHHHHT-TCCEEEEEEEEETTTTEEE-EEEEEEGGGS-SSCHHHHHHHHHHH
T ss_pred eEEEEEECCC--CCCHHHHHHHHHHHC-CCCEEEeeEEecCCCCeEE-EEEEEecCCC-CCCHHHHHHHHHHH
Confidence 4678999999 999999999999999 999999886654 34433 3344443322 35677777777543
No 31
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=89.34 E-value=0.99 Score=34.80 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=32.1
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEe
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPF 202 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~ 202 (238)
.|+|.|.. |.|+|.+|+++|.+. ++++...++.+.
T Consensus 2 ~~~v~~~d--r~g~l~~i~~~l~~~-~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCED--RLGLTRELLDLLVLR-GIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECS--CTTHHHHHHHHHHHT-TCCEEEEEEETT
T ss_pred EEEEEEec--CCcHHHHHHHHHHHc-CCCeEEEEEecC
Confidence 47899999 999999999999999 999999998664
No 32
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=88.79 E-value=3.8 Score=35.34 Aligned_cols=68 Identities=13% Similarity=0.298 Sum_probs=47.0
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE--ecCeEEEEEEEEEecC-CcccCHHHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP--FGNSTVDITVVAQMDV-ESDVTVKDLVKNLQPA 233 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~--~~~~~l~~~i~~q~~~-~~~~~~~dL~~~L~~a 233 (238)
..+.|.+.|++ ++|+...|-..|-+. |++|+..+-.. ..+.++ ..+.+.... +...+.++|.+.+...
T Consensus 9 ~~~vLtv~c~D--r~GIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 9 HQFVLTLSCPS--AAGQVAAVVGLLDRH-RCYVDELTVFDDDLSARFF-VRCVFHATDDADALRVDALRREFEPI 79 (292)
T ss_dssp CEEEEEEEEES--CSCHHHHHHHHHHHT-TEEEEEEEEEEETTTTEEE-EEEEEEECC----CCHHHHHHHHHHH
T ss_pred CcEEEEEEcCC--CCCHHHHHHHHHHHC-CCCEEeeEEEecCCCCceE-EEEEEEccCcccCCCHHHHHHHHHHH
Confidence 35778999999 999999999999999 99999988663 234332 233443330 1135677777777543
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=88.42 E-value=2.6 Score=33.32 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=37.7
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC-eEEEEEEEEE
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN-STVDITVVAQ 214 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~-~~l~~~i~~q 214 (238)
-.|.|...+ ++|.|.+|...|... |++|.+.++....+ .+..++|.+.
T Consensus 5 ~~IsV~veN--rpGvL~rI~~lfs~r-g~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 5 HIISLLMEN--EAGALSRVAGLFSAR-GYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEEEC--STTHHHHHHHHHHHH-TCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEEeC--CCcHHHHHHHHHHHC-CCcEEEEEEEecCCCCEEEEEEEEe
Confidence 356777777 999999999999999 99999988876553 4444566665
No 34
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=87.25 E-value=3.8 Score=33.25 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=37.6
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC-eEEEEEEEEE
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN-STVDITVVAQ 214 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~-~~l~~~i~~q 214 (238)
-.|.|..+. ++|.|.+|...|... |++|.+.++....+ .+..++|++.
T Consensus 30 ~~LsVlVeN--~pGvLaRItglfsrR-G~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 30 HLVSMLVHN--KPGVMRKVANLFARR-GFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp EEEEEEEEC--CTTHHHHHHHHHHTT-TCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEECC--CChHHHHHHHHHHHC-CceEEEEEeeccCCCCEEEEEEEEE
Confidence 456677777 999999999999999 99999988765444 3444566665
No 35
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=80.95 E-value=12 Score=32.02 Aligned_cols=64 Identities=11% Similarity=0.238 Sum_probs=43.0
Q ss_pred CeEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEE--ecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 162 RDVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLP--FGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 162 ~~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~--~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
..+.|.+.|++ ++|+...|-..|-+. |.+|+..+-.. ..+.++ ..+.+.... ...++|.+.+..
T Consensus 6 ~~~vLtv~c~D--r~GIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~---~~~~~L~~~f~~ 71 (287)
T 3nrb_A 6 NQYVLSLACQD--APGIVSEVSTFLFNN-GANIVEAEQFNDEDSSKFF-MRVSVEIPV---AGVNDFNSAFGK 71 (287)
T ss_dssp TEEEEEEEEEC--CTTHHHHHHHHHHHT-TCEEEEEEEEEETTTTEEE-EEEEEECCC------CHHHHHHHH
T ss_pred CeEEEEEECCC--CCCHHHHHHHHHHHC-CCCEEeeeeeecCCCCeEE-EEEEEEcCC---CCHHHHHHHHHH
Confidence 45789999999 999999999999999 99999988642 233332 333343322 233456555543
No 36
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=80.74 E-value=16 Score=31.89 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=41.9
Q ss_pred EEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCC
Q 026436 168 IHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVE 218 (238)
Q Consensus 168 i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~ 218 (238)
+.....+++|.|.++|..|... |++...-......+....|.|.+.+++.
T Consensus 211 ~~~~~~~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~eg~ 260 (329)
T 3luy_A 211 TLIPLVTGPGVLANLLDVFRDA-GLNMTSFISRPIKGRTGTYSFIVTLDAA 260 (329)
T ss_dssp EEECSCCSTTHHHHHHHHHHHT-TCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred EEecCCCCCCHHHHHHHHHHHC-CcceEEEEeeECCCCCccEEEEEEEeCC
Confidence 3444324799999999999999 9999999999999988889888888763
No 37
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=72.15 E-value=10 Score=32.14 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=40.9
Q ss_pred eEEEEEEe---cCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEec
Q 026436 163 DVLIRIHC---EKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMD 216 (238)
Q Consensus 163 ~~~I~i~c---~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~ 216 (238)
...|-+.. .. ++|.|.++|..|... |++...-..-...+..+.|.|.+.++
T Consensus 186 ktsl~f~~~~~~~--~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 186 ATSLMFLITPMHD--KPGLLASVLNTFALF-NINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp CSEEEEEEEESSC--CTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred eEEEEEEcCCCCC--CcChHHHHHHHHHHc-CCCeeEEEEeecCCCCccEEEEEEEe
Confidence 33444555 45 899999999999999 99999999888877766777777776
No 38
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=68.97 E-value=15 Score=31.44 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=41.7
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecC
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDV 217 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~ 217 (238)
..|-+..+. ++|.|.++|..|... |++...-..-...+..+.|.|.+.+++
T Consensus 201 tsl~f~~~~--~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfvD~eg 251 (283)
T 2qmx_A 201 TSIVFALPN--EQGSLFRALATFALR-GIDLTKIESRPSRKKAFEYLFYADFIG 251 (283)
T ss_dssp EEEEEEEEC--CTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTEEEEEEEEES
T ss_pred EEEEEEcCC--CCchHHHHHHHHHHc-CCCeeEEEeeEcCCCCcceEEEEEEec
Confidence 344455556 899999999999999 999999998888877777778887765
No 39
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=64.03 E-value=37 Score=25.10 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=35.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 166 IRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 166 I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
|-+..+. +||.+.+++++|.+. |+.|...-.+.-+.... +....+ ..+..++.|+.
T Consensus 75 v~v~~~d--~pGvla~i~~~L~~~-~InI~~~~~~~~~~~~~---~~i~~~-----d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPN--VPGALAKVLGFLSAE-GVFIEYMYSFANNNVAN---VVIRPS-----NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEES--STTHHHHHHHHHHHT-TCCEEEEEEEEETTEEE---EEEEES-----CHHHHHHHHHH
T ss_pred EEEEeCC--CCcHHHHHHHHHHHC-CCCEEEEEEEccCCcEE---EEEEeC-----CHHHHHHHHHH
Confidence 3445566 899999999999999 99996644332233332 223332 45555555554
No 40
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=62.93 E-value=17 Score=31.63 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=40.2
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecC
Q 026436 164 VLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDV 217 (238)
Q Consensus 164 ~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~ 217 (238)
..|-+..+. |++|.|.++|..|... |++...-..-...+....|.|.+.+++
T Consensus 202 TSl~f~~~~-~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~eg 253 (313)
T 3mwb_A 202 TTVVVPLPE-DHPGALMEILDQFASR-GVNLSRIESRPTGQYLGHYFFSIDADG 253 (313)
T ss_dssp EEEEEECSS-CCTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTSEEEEEEEES
T ss_pred EEEEEEeCC-CCCCHHHHHHHHHHHC-CccEEEEEEeecCCCCccEEEEEEEeC
Confidence 444455541 3899999999999999 999999888887776666777777664
No 41
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=61.18 E-value=15 Score=25.97 Aligned_cols=65 Identities=14% Similarity=0.231 Sum_probs=42.9
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCe-E-EEEEEEEEecCCcccCHHHHHHHH
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNS-T-VDITVVAQMDVESDVTVKDLVKNL 230 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~-~-l~~~i~~q~~~~~~~~~~dL~~~L 230 (238)
...|.|.|.......+...++++|+.. ++.+.+-....+++. + +..++.+.-.+ .-.++.++..|
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~-~~~l~~l~s~~~~~~~veI~A~L~at~~~--~~~Le~iv~rL 74 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSN-DITLRGIRTGPAGDDNITLTAHLLMVGHT--PAKLERLVAEL 74 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHH-TEEEEEEEEEECSSSCEEEEEEEEEESCC--HHHHHHHHHHH
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcC-CCceeEeeeecCCCCeEEEEEEEEecCCC--HHHHHHHHHHH
Confidence 467889999843456788899999999 999988886665543 4 44555555333 22344555444
No 42
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=60.75 E-value=25 Score=22.85 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026436 63 ERKRREKLNQRFIALSALVPGLKKTDKASILGDSIKYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 63 Er~RR~~i~~~~~~L~~lvP~~~k~~k~~il~~ai~yi~~L~~~~~~l~~~~~~ 116 (238)
||++|.....+..+-++ =..--.|+..|+.++..|+.++..
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n~~ 41 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEKSA 41 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666665 133457778888888877776543
No 43
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=54.35 E-value=33 Score=26.30 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=31.1
Q ss_pred EEeeCCeEEEEEE-ecCCCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 157 VRVSDRDVLIRIH-CEKNNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 157 V~~~~~~~~I~i~-c~~~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
|....+...|.|. .+. ++|.+.+|+++|.+. |+.|....
T Consensus 19 Ia~~~~~~~i~v~~~~~--~~G~~~~if~~La~~-~Invd~i~ 58 (167)
T 2re1_A 19 IAFDKNQARINVRGVPD--KPGVAYQILGAVADA-NIEVDMII 58 (167)
T ss_dssp EEEECCCEEEEEEEEEC--CTTHHHHHHHHHHTT-TCCCCCEE
T ss_pred EEecCCEEEEEEecCCC--CcCHHHHHHHHHHHc-CCeEEEEE
Confidence 4566777888887 466 899999999999999 98776654
No 44
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=51.47 E-value=78 Score=24.10 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=31.8
Q ss_pred EEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 157 VRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 157 V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
+.+.++-..|.|.... .+++|.+.+++++|.+. |+.|...+
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~-~InI~~is 138 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEE-GINIQMIS 138 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHT-TCCCCEEE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHC-CCcEEEEE
Confidence 4455667777887665 34789999999999999 99887743
No 45
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=49.43 E-value=69 Score=23.50 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=28.4
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecC
Q 026436 165 LIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGN 204 (238)
Q Consensus 165 ~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~ 204 (238)
.|.|..+. ++|.+.+|+..|.+. |+.|..-.+....+
T Consensus 8 ~i~v~v~d--~~G~l~~i~~~la~~-~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLEN--KSGRLTEVTEVLAKE-NINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECS--SSSHHHHHHHHHHHT-TCCEEEEEEEECSS
T ss_pred EEEEEecC--CCcHHHHHHHHHHHC-CCCEEEEEEEecCC
Confidence 34556666 999999999999999 99888766544333
No 46
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=47.79 E-value=17 Score=33.10 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=39.9
Q ss_pred eEEEEEEecCCCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEec
Q 026436 163 DVLIRIHCEKNNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMD 216 (238)
Q Consensus 163 ~~~I~i~c~~~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~ 216 (238)
...|-+..+. ++|.|.++|..|... |+++.+-..-...+....|.|.+.++
T Consensus 34 KTSLiFsl~n--~pGAL~~~L~~Fa~~-gINLTkIESRPsk~~~~eY~FfVD~e 84 (429)
T 1phz_A 34 AISLIFSLKE--EVGALAKVLRLFEEN-DINLTHIESRPSRLNKDEYEFFTYLD 84 (429)
T ss_dssp CEEEEEEEEC--CTTHHHHHHHHHHTT-TCCTTSEEEEECSSCTTEEEEEECBC
T ss_pred eEEEEEEeCC--CccHHHHHHHHHHHc-CCceEEEEeeecCCCCccEEEEEEEe
Confidence 3444455566 899999999999999 99999888888776656677777766
No 47
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=47.69 E-value=94 Score=23.96 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=44.3
Q ss_pred eEEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 156 EVRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 156 ~V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.+.+.++-+.|.|.... .+.+|.+.+++++|.+. |+.|.-.+ +-.-.+ .+.+. .-..+..++.|+.++
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~-~InI~~is--tSe~~I---s~vV~-----~~d~~~Av~~Lh~~F 156 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDV-NVNIELIS--TSEIRI---SVLIR-----EDDLDAAARALHEQF 156 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHT-TCCCCEEE--EETTEE---EEEEE-----GGGHHHHHHHHHHHH
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHC-CCCEEEEE--cCCCeE---EEEEe-----HHHHHHHHHHHHHHH
Confidence 35566777888887764 23789999999999999 99886643 223222 22232 123556667777665
No 48
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=45.25 E-value=32 Score=20.26 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026436 93 LGDSIKYLKQLQERVKALEEQTS 115 (238)
Q Consensus 93 l~~ai~yi~~L~~~~~~l~~~~~ 115 (238)
+.+--+||++|+++..+|+.-++
T Consensus 5 vkelknyiqeleernaelknlke 27 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHH
Confidence 44566899999999888876443
No 49
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=41.24 E-value=64 Score=22.90 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026436 93 LGDSIKYLKQLQERVKALEEQT 114 (238)
Q Consensus 93 l~~ai~yi~~L~~~~~~l~~~~ 114 (238)
.+.|=+||.+|.++++-|++..
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 5678899999999999999853
No 50
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=40.54 E-value=37 Score=17.67 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026436 91 SILGDSIKYLKQLQERVK 108 (238)
Q Consensus 91 ~il~~ai~yi~~L~~~~~ 108 (238)
+-|-+|-+|+.+|+.+++
T Consensus 4 sgliearkyleqlhrklk 21 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788899999888765
No 51
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=40.34 E-value=1.3e+02 Score=23.39 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=45.2
Q ss_pred eEEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 156 EVRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 156 ~V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
+|.+.++-..|.+.-.. .+.+|.+.+++++|.+. |+.|.-.+ +-.-.+ .+.+.. -..+..++.|+.++
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~-~InI~~Is--tSei~I---s~vV~~-----~d~~~Av~aLH~~f 157 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAV-GVNIELIS--TSEIRI---SVLCRD-----TELDKAVVALHEAF 157 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHT-TCCCCEEE--EETTEE---EEEEEG-----GGHHHHHHHHHHHH
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHC-CCcEEEEE--cCCCEE---EEEEeH-----HHHHHHHHHHHHHH
Confidence 45556777788877554 24799999999999999 98877766 223322 233332 33556677777776
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.97 E-value=34 Score=23.67 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 026436 93 LGDSIKYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 93 l~~ai~yi~~L~~~~~~l~~~~~~ 116 (238)
+..||+-|.-||.++++|++++..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999987654
No 53
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=37.75 E-value=1.2e+02 Score=23.31 Aligned_cols=38 Identities=8% Similarity=0.256 Sum_probs=28.8
Q ss_pred EEeeCCeEEEEEE-ecCCCCCcHHHHHHHHHHhcCCeeEEEE
Q 026436 157 VRVSDRDVLIRIH-CEKNNNKGHLANILSEIENVHHLSVLSC 197 (238)
Q Consensus 157 V~~~~~~~~I~i~-c~~~~~~g~L~~il~~Le~l~~L~V~~a 197 (238)
|....+.+.|.|. .+. ++|.+.+|++.|.+. |+.|.-.
T Consensus 9 Ia~~~~~~~Itv~~~~~--~~G~~a~if~~La~~-~InId~i 47 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISD--KPGEAAKVFRALADA-EINIDMV 47 (178)
T ss_dssp EEEECSEEEEEEEEEEC--STTHHHHHHHHHHHT-TCCCCEE
T ss_pred EEecCCEEEEEEecCCC--CccHHHHHHHHHHHc-CCCEEEE
Confidence 3566777888884 455 899999999999999 9544443
No 54
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=37.58 E-value=1.4e+02 Score=23.78 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=36.4
Q ss_pred EEeeCCeEEEEEE-ecCCCCCcHHHHHHHHHHhcCCeeEEE--EEEEEecCeEEEEEEEEE
Q 026436 157 VRVSDRDVLIRIH-CEKNNNKGHLANILSEIENVHHLSVLS--CNVLPFGNSTVDITVVAQ 214 (238)
Q Consensus 157 V~~~~~~~~I~i~-c~~~~~~g~L~~il~~Le~l~~L~V~~--a~is~~~~~~l~~~i~~q 214 (238)
|....+.+.|.|. .+. .+|.+.+|+.+|.+. |+.|-- -+++...+...+++|.+.
T Consensus 29 Ia~~~~~a~Iti~g~~~--~pG~aa~IF~~La~~-~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 29 VAHDRSEAKVTIVGLPD--IPGYAAKVFRAVADA-DVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp EEEECSEEEEEEEEEEC--STTHHHHHHHHHHHT-TCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred EEccCCEEEEEEecCCC--CccHHHHHHHHHHHh-CcceEEEeeccccccccceEEEEecc
Confidence 4566778888885 455 899999999999998 875543 344444444444555554
No 55
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=37.39 E-value=26 Score=22.80 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 026436 98 KYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 98 ~yi~~L~~~~~~l~~~~~~ 116 (238)
.||..|+.++..|+..+..
T Consensus 49 ~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999987764
No 56
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=36.38 E-value=54 Score=24.97 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHH
Q 026436 69 KLNQRFIALSALVPGL----KKTDKASILGDSIKYLKQL 103 (238)
Q Consensus 69 ~i~~~~~~L~~lvP~~----~k~~k~~il~~ai~yi~~L 103 (238)
-|.-.|+.|..++|.- .+.-|-.||..|.+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 3888999999999954 5667999999999988765
No 57
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=32.90 E-value=37 Score=21.48 Aligned_cols=19 Identities=42% Similarity=0.711 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 026436 98 KYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 98 ~yi~~L~~~~~~l~~~~~~ 116 (238)
.||..|+.+|..|+.++..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~ 40 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKT 40 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7889999999988887654
No 58
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=32.12 E-value=36 Score=21.83 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 026436 98 KYLKQLQERVKALEEQTSK 116 (238)
Q Consensus 98 ~yi~~L~~~~~~l~~~~~~ 116 (238)
.||..|+.+++.|+..+..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788888888888876653
No 59
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=31.67 E-value=91 Score=23.03 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=35.0
Q ss_pred CCcHHHHHHHHHHhcCC--eeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 026436 175 NKGHLANILSEIENVHH--LSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQP 232 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~--L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~ 232 (238)
..|+|.++|+.+... | ++|+.+++-.-.+..-+..+.+..++ .-.+++|...|++
T Consensus 14 DSgil~~~LD~I~d~-GG~F~I~~f~vG~~k~d~SyA~l~V~a~d--~e~L~~Il~~L~~ 70 (118)
T 3mgj_A 14 DSLILPKVFDKILDM-GGDYKVLEFEIGKRKTDPSYAKILVIGRD--ERHVDEILNELRD 70 (118)
T ss_dssp TSSHHHHHHHHHHHT-TCEEEEEEEECCSSTTSCEEEEEEEEESS--HHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhc-CCCEEEEEEecCCCCCCcceEEEEEecCC--HHHHHHHHHHHHH
Confidence 479999999999998 6 68888887654443332334443333 3344555555544
No 60
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=31.31 E-value=1.7e+02 Score=22.08 Aligned_cols=68 Identities=9% Similarity=0.056 Sum_probs=43.3
Q ss_pred eEEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 156 EVRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 156 ~V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.+.+.++-..|.+.... .+.+|.+.+++++|.+. |+.|.-.+ +..-+ +.+.+.. -..+..++.|+.++
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~-~InI~~is--~Se~~---is~vv~~-----~d~~~Av~~Lh~~f 156 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVAST-GANIEMIA--TSEVR---ISVIIPA-----EYAEAALRAVHQAF 156 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHT-TCCCCEEE--ECSSE---EEEEEEG-----GGHHHHHHHHHHHT
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHC-CCCEEEEE--ccCCE---EEEEEeH-----HHHHHHHHHHHHHH
Confidence 45556777778887655 33789999999999999 99884443 22222 2333432 23455666676654
No 61
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=31.09 E-value=1.2e+02 Score=27.52 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=43.8
Q ss_pred eEEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 156 EVRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 156 ~V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
.|.+..+-..|.|.... .+++|.+.+++++|.+. |+.|.-.+ ++.+=..+.+.+.. -..+..++.|+.++
T Consensus 397 ~v~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~-~InI~mis---qgtSe~~Is~vV~~-----~d~~~Av~aLh~~f 467 (473)
T 3c1m_A 397 DVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSES-GANIKMIA---QGSSEVNISFVIDE-----KDLLNCVRKLHEKF 467 (473)
T ss_dssp EEEEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHH-TCCCCEEE---ESSCSSEEEEEEEG-----GGHHHHHHHHHHHH
T ss_pred eEEEeCCcEEEEEEecCCCCChhHHHHHHHHHHHC-CCCEEEEe---cCCCCceEEEEEcH-----HHHHHHHHHHHHHH
Confidence 34555666677777665 34789999999999999 88884332 23221223334432 23556677777766
No 62
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.78 E-value=38 Score=22.65 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 026436 98 KYLKQLQERVKALEEQTS 115 (238)
Q Consensus 98 ~yi~~L~~~~~~l~~~~~ 115 (238)
.||+.|+.++..|+....
T Consensus 29 ~~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777777776443
No 63
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=29.53 E-value=29 Score=28.02 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 026436 67 REKLNQRFIALSALVPGLKKTDKASILGDSIKYLKQLQERVKALEE 112 (238)
Q Consensus 67 R~~i~~~~~~L~~lvP~~~k~~k~~il~~ai~yi~~L~~~~~~l~~ 112 (238)
|..++.-...|+.|.-. .-.....++.+||+|++.|-+-...|+.
T Consensus 53 ~~Dl~~F~~QL~qL~~~-~i~~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKD-DISNTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp HHHHHHHHHHHHHHHHH-SCSTTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888887521 2234568899999999988877666653
No 64
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=28.24 E-value=2.3e+02 Score=25.05 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=42.9
Q ss_pred EEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 157 VRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 157 V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
+.+.++-..|.|.... .+++|.+.+++++|.+. |+.|.-.+ +...++ .+.+.. -..+..++.|+.++
T Consensus 338 v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~-~InI~~is--~Se~~i---s~vV~~-----~d~~~Av~~Lh~~f 405 (421)
T 3ab4_A 338 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDV-NVNIELIS--TSEIRI---SVLIRE-----DDLDAAARALHEQF 405 (421)
T ss_dssp EEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHT-TCCCCEEE--EETTEE---EEEEEG-----GGHHHHHHHHHHHT
T ss_pred EEEeCCeEEEEEEccCcccCccHHHHHHHHHHHC-CCCEEEEE--cCCCeE---EEEEeH-----HHHHHHHHHHHHHH
Confidence 4455666677777654 34789999999999998 88886433 223322 233332 23556677777765
No 65
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.98 E-value=56 Score=19.59 Aligned_cols=18 Identities=50% Similarity=0.805 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 026436 98 KYLKQLQERVKALEEQTS 115 (238)
Q Consensus 98 ~yi~~L~~~~~~l~~~~~ 115 (238)
.|+-+|+.++++|+..+.
T Consensus 3 aYl~eLE~r~k~le~~na 20 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNS 20 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 477777777777776443
No 66
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=25.91 E-value=97 Score=23.27 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=30.7
Q ss_pred EEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 157 VRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 157 V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
|....+.+.|.|.... .+.+|.+.+|+++|.+. |+.|....
T Consensus 12 Ia~~~~va~Iti~~~~m~~~~g~~~~if~~La~~-~I~vd~I~ 53 (157)
T 3mah_A 12 VAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFY-QEPVDMVA 53 (157)
T ss_dssp EEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCSCEE
T ss_pred EEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHc-CCCEEEEE
Confidence 3455667788887655 23689999999999999 98776544
No 67
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=25.58 E-value=85 Score=16.78 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=14.0
Q ss_pred CChhhHHHHHHHHHHHHHH
Q 026436 87 TDKASILGDSIKYLKQLQE 105 (238)
Q Consensus 87 ~~k~~il~~ai~yi~~L~~ 105 (238)
+...-+|-+|.+|+...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3456778899999986554
No 68
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.58 E-value=1.5e+02 Score=20.53 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026436 93 LGDSIKYLKQLQERVKALEEQTS 115 (238)
Q Consensus 93 l~~ai~yi~~L~~~~~~l~~~~~ 115 (238)
|.+|+.=-+.|+.++..|++++.
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~ 63 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIA 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666665543
No 69
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.33 E-value=1.1e+02 Score=17.87 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=23.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 026436 87 TDKASILGDSIKYLKQLQERVKALEEQTS 115 (238)
Q Consensus 87 ~~k~~il~~ai~yi~~L~~~~~~l~~~~~ 115 (238)
+.-..-|+++-+-|..|+.+++.|++++-
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999998654
No 70
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=23.79 E-value=94 Score=23.59 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=29.7
Q ss_pred EEeeCCeEEEEEEe-cCCCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 157 VRVSDRDVLIRIHC-EKNNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 157 V~~~~~~~~I~i~c-~~~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
|....+.+.|.|.. +. ++|.+.+|+.+|.+. |+.|.--.
T Consensus 10 Ia~~~~~a~Itv~g~~~--~~G~~a~if~~La~~-~InVd~I~ 49 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPD--QPGIAAKVFQALAER-GIAVDMII 49 (167)
T ss_dssp EEEECSEEEEEEEEEEC--STTHHHHHHHHHHHH-TCCCSCEE
T ss_pred EEEeCCEEEEEEecCCC--CCCHHHHHHHHHHHc-CCcEEEEE
Confidence 45567777887764 34 789999999999988 88775543
No 71
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=23.58 E-value=3e+02 Score=24.69 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=43.3
Q ss_pred EEeeCCeEEEEEEecC-CCCCcHHHHHHHHHHhcCCeeEEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 157 VRVSDRDVLIRIHCEK-NNNKGHLANILSEIENVHHLSVLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 157 V~~~~~~~~I~i~c~~-~~~~g~L~~il~~Le~l~~L~V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
|.+.++-..|.|.-.. .+.+|...+++++|.+. |+.|.-.+-.+-.-. +.+.+.- -..+..++.|++++
T Consensus 368 v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~-~InI~mIsqgtSei~---Is~vV~~-----~d~~~Av~aLH~~f 437 (446)
T 3tvi_A 368 IEIHPNMALVATVGTGMAKTKGIANKIFTALSKE-NVNIRMIDQGSSEIN---VIVGVET-----VDFEKAVKSIYNAF 437 (446)
T ss_dssp EEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHT-TCCEEEEEECSCTTE---EEEEEEG-----GGHHHHHHHHHHHH
T ss_pred EEEeCCeEEEEEECCCccCChhHHHHHHHHHHHC-CCCEEEEEecCCCce---EEEEEcH-----HHHHHHHHHHHHHH
Confidence 4445566677776554 34799999999999999 988866442222222 2333332 23556677777765
No 72
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=23.32 E-value=73 Score=20.20 Aligned_cols=26 Identities=8% Similarity=0.296 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCC
Q 026436 61 IAERKRREKLNQRFIALSALVPGLKK 86 (238)
Q Consensus 61 ~~Er~RR~~i~~~~~~L~~lvP~~~k 86 (238)
.++|-+|...++-+..|+++.|+..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 46788899999999999999998643
No 73
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=23.27 E-value=2.6e+02 Score=21.56 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=28.9
Q ss_pred EeeCCeEEEEEEe-cCCCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 158 RVSDRDVLIRIHC-EKNNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 158 ~~~~~~~~I~i~c-~~~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
....+.+.|.|.. +. .+|.+.+|+..|.+. |+.|.--.
T Consensus 11 a~~~~~~~Iti~~~~~--~~G~~a~If~~La~~-~I~vd~I~ 49 (181)
T 3s1t_A 11 AHDRSEAKVTIVGLPD--IPGYAAKVFRAVADA-DVNIDMVL 49 (181)
T ss_dssp EEECSEEEEEEEEEES--STTHHHHHHHHHHHT-TCCCCCEE
T ss_pred EecCCEEEEEEecCCC--CcCHHHHHHHHHHHc-CCcEEEEE
Confidence 5566777777753 34 799999999999999 88776543
No 74
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=22.63 E-value=2.3e+02 Score=22.09 Aligned_cols=50 Identities=6% Similarity=0.181 Sum_probs=39.3
Q ss_pred CCCeeeEEeeCCeEEEEEEecCCC-C---CcHHHHHHHHHHhcCCeeEEEEEEEE
Q 026436 151 YLPEIEVRVSDRDVLIRIHCEKNN-N---KGHLANILSEIENVHHLSVLSCNVLP 201 (238)
Q Consensus 151 ~~~~V~V~~~~~~~~I~i~c~~~~-~---~g~L~~il~~Le~l~~L~V~~a~is~ 201 (238)
...+|.+++.++.+.+.|...... | ..-+.++-++|.+- ||.+..++|+.
T Consensus 99 G~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~q-Gi~L~~v~Vs~ 152 (169)
T 2rrl_A 99 GQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAES-GIQLGQSSISS 152 (169)
T ss_dssp CCEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTT-TCEEEEEEEES
T ss_pred CcEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEec
Confidence 346788888999999999998821 1 23478888999999 99999988765
No 75
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=21.47 E-value=41 Score=22.21 Aligned_cols=19 Identities=53% Similarity=0.601 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026436 97 IKYLKQLQERVKALEEQTS 115 (238)
Q Consensus 97 i~yi~~L~~~~~~l~~~~~ 115 (238)
-.||..|+.++..|+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~ 75 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3799999999999987554
No 76
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=20.98 E-value=3.3e+02 Score=23.95 Aligned_cols=39 Identities=8% Similarity=0.224 Sum_probs=31.8
Q ss_pred EEeeCCeEEEEEE-ecCCCCCcHHHHHHHHHHhcCCeeEEEEE
Q 026436 157 VRVSDRDVLIRIH-CEKNNNKGHLANILSEIENVHHLSVLSCN 198 (238)
Q Consensus 157 V~~~~~~~~I~i~-c~~~~~~g~L~~il~~Le~l~~L~V~~a~ 198 (238)
+....+.+.|.|. ... ++|.+.+|++.|.+. |+.|.--.
T Consensus 258 i~~~~~~~~i~v~~~~~--~~g~~~~If~~La~~-~I~vd~I~ 297 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISD--KPGEAAKVFRALADA-EINIDMVL 297 (421)
T ss_dssp EEEECSEEEEEEEEEES--STTHHHHHHHHHHHT-TCCCEEEE
T ss_pred EEeeCCEEEEEEeccCC--cccHHHHHHHHHHHc-CCcEEEEE
Confidence 4667788888887 555 799999999999999 98776653
No 77
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=20.97 E-value=2.4e+02 Score=20.42 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=35.4
Q ss_pred CCcHHHHHHHHHHhcCCeeEEEEEEEEecCe--EEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 026436 175 NKGHLANILSEIENVHHLSVLSCNVLPFGNS--TVDITVVAQMDVESDVTVKDLVKNLQPAL 234 (238)
Q Consensus 175 ~~g~L~~il~~Le~l~~L~V~~a~is~~~~~--~l~~~i~~q~~~~~~~~~~dL~~~L~~al 234 (238)
++.-+-++.++|.+. |+..+. ++..+++ --+.++..-++++ .++++++.+.++.
T Consensus 14 rp~kld~V~~AL~~~-G~~~t~--v~~~gGf~r~g~~~leivV~De---~Vd~vi~~I~~~a 69 (114)
T 3m05_A 14 QDKDANYLSDQFIDQ-NVRATK--LSTTGGFLQSGNTTFMIGIEEE---RVPEVLEIIKKAS 69 (114)
T ss_dssp EHHHHHHHHHHHHHT-TCCEEE--EEEEETTTTEEEEEEEEEEEGG---GHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-CCCEEE--EEEeccccccCCEEEEEEEcHH---HHHHHHHHHHHHc
Confidence 577899999999999 999754 4444443 2234444445443 3667777777654
No 78
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=20.22 E-value=1.5e+02 Score=21.14 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=34.3
Q ss_pred eEEeeCCeEEEEEEecCC-CCCcHHHHHHHHHHhcCCee-EEEEEEEEecCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 026436 156 EVRVSDRDVLIRIHCEKN-NNKGHLANILSEIENVHHLS-VLSCNVLPFGNSTVDITVVAQMDVESDVTVKDLVKNLQ 231 (238)
Q Consensus 156 ~V~~~~~~~~I~i~c~~~-~~~g~L~~il~~Le~l~~L~-V~~a~is~~~~~~l~~~i~~q~~~~~~~~~~dL~~~L~ 231 (238)
+|+..+++-+..|....+ ....-=.++|+.|.++++|. -.-.+++-.+. .+ ||.+.- +..+++..|+++..-
T Consensus 2 ev~~~~deeygYIvt~~~~l~~~~G~~l~~~la~~l~l~~~~F~~isV~g~-aV--TFrV~~-N~~n~taadVA~~a~ 75 (99)
T 4hti_A 2 EVQPSEEEARGYIVTDRDPLRPEEGRRLVEDVARLLQVPSSAFADVEVLGP-AV--TFKVSA-NVQNVTTEDVEKATV 75 (99)
T ss_dssp --------CCEEEEESCSSCCHHHHHHHHHHHHHHTTCCGGGEEEEEEETT-EE--EEEECC-CTTCCCHHHHHHHHH
T ss_pred ccccCCcceeEEEEECCCCCCHHHHHHHHHHHHHHhCCchhheeeeeecCc-eE--EEEecc-CCCCCCHHHHHHHHH
Confidence 566666664444544441 12233467777777765664 22344444443 33 455553 445788888877653
Done!